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2024-05-14 19:18:49

Gene list

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COG category: Signal transduction mechanisms
Genomic element: chromosome 2

Number of genes found: 129

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VPA0008 putative amino acid ABC transporter, periplasmic amino acid-binding portionchromosome 2 CDS7634 756 - 0.449735
VPA0009 putative two-component sensorchromosome 2 CDS8458 1899 + 0.481306
VPA0020 conserved hypothetical proteinchromosome 2 CDS17907 1032 + 0.468023
VPA0021 response regulatorchromosome 2 CDS18940 792 + 0.467172
VPA0024 methyl-accepting chemotaxis proteinchromosome 2 CDS21160 1662 - 0.488568
VPA0059 GGDEF family proteinchromosome 2 CDS50262 1158 - 0.462867
VPA0068 GGDEF family proteinchromosome 2 CDS59137 1092 - 0.427656
VPA0075 hypothetical proteinchromosome 2 CDS65948 1869 - 0.492777
VPA0115 conserved hypothetical proteinchromosome 2 CDS107093 1143 + 0.468941
VPA0148 putative transcriptional regulator CpxRchromosome 2 CDS143183 666 + 0.451952
VPA0149 putative two-component system sensor kinasechromosome 2 CDS143845 1377 + 0.457516
VPA0182 putative C4-dicarboxylate transport sensor proteinchromosome 2 CDS178240 2073 - 0.478051
VPA0183 C4-dicarboxylate transport transcriptional regulatory proteinchromosome 2 CDS180581 1356 + 0.485251
VPA0184 hypothetical protein, GGDEF domainchromosome 2 CDS181973 1257 - 0.435163
VPA0198 putative GGDEF family proteinchromosome 2 CDS196850 1356 + 0.469764
VPA0199 putative hemolysin secretion protein HylBchromosome 2 CDS198296 1998 - 0.484484
VPA0202 GGDEF family proteinchromosome 2 CDS203126 1014 - 0.445759
VPA0231 phosphotransferase enzyme II, A componentchromosome 2 CDS235544 444 - 0.472973
VPA0275 putative flagellinchromosome 2 CDS274784 1041 + 0.481268
VPA0298 PTS system, fructose-specific IIA componentchromosome 2 CDS298788 441 - 0.38322
VPA0358 putative transcriptional regulator, LuxR familychromosome 2 CDS352083 654 - 0.461774
VPA0360 hypothetical proteinchromosome 2 CDS353617 1017 - 0.423795
VPA0431 putative chemotaxis protein CheVchromosome 2 CDS422263 915 - 0.448087
VPA0448 hypothetical proteinchromosome 2 CDS440038 735 + 0.431293
VPA0466 universal stress protein Achromosome 2 CDS461359 426 - 0.410798
VPA0476 hypothetical proteinchromosome 2 CDS475338 1068 - 0.464419
VPA0491 methyl-accepting chemotaxis proteinchromosome 2 CDS496960 1632 - 0.441176
VPA0500 putative PTS system, mannitol-specific enzyme II componentchromosome 2 CDS506781 444 + 0.432432
VPA0511 methyl-accepting chemotaxis proteinchromosome 2 CDS516211 1872 - 0.457799
VPA0518 GGDEF family proteinchromosome 2 CDS523838 1821 - 0.450851
VPA0554 methyl-accepting chemotaxis proteinchromosome 2 CDS552391 1344 - 0.442708
VPA0556 GGDEF family proteinchromosome 2 CDS554210 1443 + 0.455994
VPA0562 putative chemotaxis transducerchromosome 2 CDS561036 2043 + 0.461576
VPA0594 hypothetical proteinchromosome 2 CDS594239 1467 + 0.432856
VPA0596 putative methyl-accepting chemotaxis proteinchromosome 2 CDS597420 1557 + 0.442518
VPA0609 hypothetical proteinchromosome 2 CDS612869 1602 - 0.453184
VPA0612 putative chemotaxis transducerchromosome 2 CDS616240 1314 + 0.475647
VPA0637 arginine ABC transporter, periplasmic arginine-binding proteinchromosome 2 CDS643344 744 + 0.446237
VPA0656 putative cyclic nucleotide binding proteinchromosome 2 CDS659198 681 + 0.45815
VPA0675 sensor protein TorSchromosome 2 CDS694458 2967 + 0.476576
VPA0678 hypothetical proteinchromosome 2 CDS700147 387 - 0.449612
VPA0710 sensor histidine kinase/response regulator LuxNchromosome 2 CDS736298 2049 + 0.416789
VPA0713 hypothetical proteinchromosome 2 CDS741193 747 - 0.385542
VPA0736 putative sensory box sensor histidine kinase/response regulator VieSchromosome 2 CDS767025 3666 + 0.467812
VPA0737 putative two-component response regulatorchromosome 2 CDS770674 1167 + 0.452442
VPA0738 putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA family)chromosome 2 CDS771833 597 + 0.435511
VPA0739 putaitive GGDEF domainchromosome 2 CDS772439 1371 + 0.448578
VPA0741 putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA family)chromosome 2 CDS774867 621 - 0.444444
VPA0743 putative response regulator VieBchromosome 2 CDS775706 1632 - 0.435662
VPA0744 hypothetical proteinchromosome 2 CDS777433 405 - 0.417284
VPA0746 chemotaxis protein CheVchromosome 2 CDS778317 975 + 0.448205
VPA0763 putative sensor kinase CitAchromosome 2 CDS793868 1575 + 0.471746
VPA0764 putative transcriptional regulator CitBchromosome 2 CDS795439 678 + 0.469027
VPA0777 hypothetical proteinchromosome 2 CDS806993 876 - 0.458904
VPA0818 conserved hypothetical proteinchromosome 2 CDS849413 819 - 0.448107
VPA0820 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome 2 CDS851326 822 - 0.467153
VPA0826 putative phosphoglycerate transport regulatory protein PgtBchromosome 2 CDS858443 2376 + 0.453283
VPA0827 phosphoglycerate transport system transcriptional regulatory protein PgtAchromosome 2 CDS860808 1269 + 0.453901
VPA0839 hypothetical proteinchromosome 2 CDS875227 1752 + 0.438927
VPA0842 methyl-accepting chemotaxis proteinchromosome 2 CDS878383 1431 - 0.470999
VPA0846 conserved hypothetical proteinchromosome 2 CDS882359 789 - 0.442332
VPA0869 GGDEF family proteinchromosome 2 CDS909571 1911 - 0.439037
VPA0878 hypothetical proteinchromosome 2 CDS921191 1959 + 0.429811
VPA0915 putative universal stress protein Achromosome 2 CDS948185 390 - 0.397436
VPA0919 transcriptional regulatorchromosome 2 CDS951608 663 - 0.449472
VPA0920 sensor histidine kinasechromosome 2 CDS952245 1455 - 0.429553
VPA0925 GGDEF family proteinchromosome 2 CDS958191 1245 + 0.440964
VPA0927 putative regulatory components of sensory transduction systemchromosome 2 CDS960497 972 - 0.44856
VPA0964 response regulator (repressor) in two-component regulatory system with UhpB (LuxR/UhpA family)chromosome 2 CDS1007129 609 + 0.481117
VPA0965 putatve sensor histidine protein kinase UhpBchromosome 2 CDS1007737 1503 + 0.490353
VPA0991 hypothetical proteinchromosome 2 CDS1037440 1842 - 0.464712
VPA1000 methyl-accepting chemotaxis proteinchromosome 2 CDS1053339 1632 + 0.456495
VPA1037 probable phosphoprotein phosphatasechromosome 2 CDS1093594 789 - 0.447402
VPA1043 hypothetical proteinchromosome 2 CDS1101720 1197 - 0.390142
VPA1044 hypothetical proteinchromosome 2 CDS1103236 2145 + 0.402797
VPA1045 hypothetical proteinchromosome 2 CDS1105492 1536 + 0.443359
VPA1046 hypothetical proteinchromosome 2 CDS1107024 342 + 0.371345
VPA1048 putative anti-sigma F factor antagonistchromosome 2 CDS1107620 495 - 0.4
VPA1049 putative two-component response regulatorchromosome 2 CDS1108107 1221 - 0.45864
VPA1060 putative two-component response regulatory proteinchromosome 2 CDS1118067 588 - 0.440476
VPA1069 putative virulence-mediating protein VirCchromosome 2 CDS1127327 1914 + 0.447753
VPA1075 putative two-component sensorchromosome 2 CDS1134746 1242 - 0.458937
VPA1076 putative two-component response regulatorchromosome 2 CDS1135959 669 - 0.452915
VPA1088 c-di-GMP phosphodiesterase A-related proteinchromosome 2 CDS1147728 2364 + 0.457699
VPA1100 putative sensor histidine kinasechromosome 2 CDS1158944 2358 - 0.454623
VPA1104 hypothetical proteinchromosome 2 CDS1162881 2724 + 0.469897
VPA1115 hypothetical proteinchromosome 2 CDS1177165 2049 - 0.450464
VPA1130 putative sensory box sensor histidine kinase/response regulatorchromosome 2 CDS1194754 2622 - 0.474447
VPA1161 hypothetical proteinchromosome 2 CDS1227279 438 - 0.461187
VPA1162 response regulatorchromosome 2 CDS1227716 1005 - 0.460697
VPA1176 hypothetical proteinchromosome 2 CDS1242933 2292 + 0.441972
VPA1182 methyl-accepting chemotaxis proteinchromosome 2 CDS1251349 1569 - 0.465902
VPA1189 methyl-accepting chemotaxis proteinchromosome 2 CDS1258293 1770 + 0.458757
VPA1195 nitrate/nitrite response regulator proteinchromosome 2 CDS1268344 627 - 0.476874
VPA1196 nitrate/nitrite sensor protein NarQchromosome 2 CDS1268963 1737 - 0.454807
VPA1220 sensor protein LuxQchromosome 2 CDS1292683 2577 - 0.450136
VPA1229 hypothetical proteinchromosome 2 CDS1301277 2649 - 0.445074
VPA1276 putative DNA-binding response regulatorchromosome 2 CDS1355471 714 + 0.481793
VPA1277 sensor histidine kinasechromosome 2 CDS1356185 1287 + 0.45066
VPA1309 hypothetical proteinchromosome 2 CDS1386870 579 + 0.46114
VPA1314 thermostable direct hemolysin Achromosome 2 CDS1391960 570 + 0.35614
VPA1324 hypothetical proteinchromosome 2 CDS1399040 693 + 0.304473
VPA1350 hypothetical proteinchromosome 2 CDS1419744 654 - 0.432722
VPA1378 thermostable direct hemolysin Schromosome 2 CDS1450828 570 + 0.354386
VPA1422 putative PTS system, nitrogen regulatory IIA componentchromosome 2 CDS1495374 777 + 0.465894
VPA1432 putative two-component response regulatorchromosome 2 CDS1507964 699 - 0.470672
VPA1433 putative two-component sensor kinasechromosome 2 CDS1508659 1047 - 0.47851
VPA1446 putative transcriptional regulator, LuxR familychromosome 2 CDS1539327 657 - 0.366819
VPA1449 methyl-accepting chemotaxis proteinchromosome 2 CDS1541405 1917 - 0.455921
VPA1457 GGDEF family proteinchromosome 2 CDS1550619 2133 - 0.468823
VPA1462 methyl-accepting chemotaxis proteinchromosome 2 CDS1556957 1644 + 0.47871
VPA1478 GGDEF family protein andchromosome 2 CDS1578072 1584 + 0.467803
VPA1492 methyl-accepting chemotaxis proteinchromosome 2 CDS1591174 1629 - 0.459791
VPA1511 ScrC (sensory box/GGDEF family protein) (involved in swarmer cell regulation)chromosome 2 CDS1615401 2325 - 0.424516
VPA1512 ScrB (extracellular solute binging protein)chromosome 2 CDS1617722 966 - 0.444099
VPA1515 putative two-component sensor histidine kinasechromosome 2 CDS1621213 1374 - 0.465066
VPA1516 putative two-component response regulatorchromosome 2 CDS1622611 762 - 0.47769
VPA1538 putative two-component response regulatorchromosome 2 CDS1639906 1335 - 0.486891
VPA1561 hypothetical proteinchromosome 2 CDS1659130 474 - 0.495781
VPA1603 putative phosphatasechromosome 2 CDS1701891 441 + 0.460317
VPA1648 hypothetical proteinchromosome 2 CDS1758919 1728 - 0.477431
VPA1651 putative methyl-accepting chemotaxis proteinchromosome 2 CDS1765651 1887 + 0.500795
VPA1664 putative two-component sensorchromosome 2 CDS1784564 1431 - 0.505241
VPA1665 putative two-component response regulatorchromosome 2 CDS1785984 708 - 0.525424
VPA1693 hypothetical proteinchromosome 2 CDS1810918 1086 + 0.478821
VPA1729 transcriptional regulator, LuxR familychromosome 2 CDS1847665 756 + 0.466931
VPA1731 putative C4-dicarboxylate transport sensor proteinchromosome 2 CDS1849594 1851 + 0.479741
VPA1732 putative two-component response regulatorchromosome 2 CDS1851437 1227 + 0.471883
VPA1735 hypothetical proteinchromosome 2 CDS1855028 1914 + 0.464472