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2024-05-12 21:44:09

Gene list

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COG category: Signal transduction mechanisms
Genomic element: chromosome 1

Number of genes found: 175

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VP0008 amino acid ABC transporter, periplasmic amino acid-binding portionchromosome 1 CDS6505 747 - 0.46988
VP0057 hypothetical proteinchromosome 1 CDS65314 1353 - 0.478197
VP0071 sensory box/GGDEF family proteinchromosome 1 CDS82010 3141 + 0.49029
VP0076 universal stress protein Achromosome 1 CDS87793 426 - 0.446009
VP0080 putative sigma-54 interacting response regulator transcription regulator proteinchromosome 1 CDS90824 1344 - 0.49256
VP0092 hypothetical proteinchromosome 1 CDS99571 2436 - 0.493432
VP0117 GGDEF family proteinchromosome 1 CDS123411 2547 - 0.484492
VP0118 nitrogen regulation proteinchromosome 1 CDS126059 1404 - 0.509971
VP0119 nitrogen regulation proteinchromosome 1 CDS127521 1047 - 0.499522
VP0122 BipA proteinchromosome 1 CDS131418 1830 + 0.468852
VP0154 transcriptional regulator OmpRchromosome 1 CDS164729 720 + 0.488889
VP0155 osmolarity sensor protein EnvZchromosome 1 CDS165554 1293 + 0.494973
VP0159 guanosine-3',5'-bis(diphosphate)3'-pyrophosphohy drolasechromosome 1 CDS171476 2121 - 0.490806
VP0183 methyl-accepting chemotaxis proteinchromosome 1 CDS195458 1674 + 0.468937
VP0196 conserved hypothetical proteinchromosome 1 CDS206439 717 + 0.429568
VP0289 conserved hypothetical proteinchromosome 1 CDS285425 573 - 0.424084
VP0319 conserved hypothetical proteinchromosome 1 CDS315182 438 - 0.454338
VP0334 bis(5'-nucleosyl)-tetraphosphatasechromosome 1 CDS327316 807 - 0.475836
VP0354 putative sensory box/GGDEF family proteinchromosome 1 CDS350612 1881 + 0.45933
VP0361 putative two component response regulator transcription regulator proteinchromosome 1 CDS358648 693 + 0.481962
VP0362 putative two component sensor proteinchromosome 1 CDS359330 1389 + 0.462923
VP0376 hypothetical proteinchromosome 1 CDS377275 753 + 0.322709
VP0417 conserved hypothetical proteinchromosome 1 CDS417110 612 - 0.439542
VP0421 methyl-accepting chemotaxis proteinchromosome 1 CDS422575 1329 + 0.478555
VP0423 glutamate-ammonia-ligase adenylyltransferasechromosome 1 CDS424012 2844 + 0.479606
VP0486 sensory box/GGDEF family proteinchromosome 1 CDS500575 1746 + 0.467354
VP0487 sensor histidine kinase FexBchromosome 1 CDS502547 2352 + 0.458333
VP0489 aerobic respiration control protein FexAchromosome 1 CDS505432 717 - 0.456067
VP0514 sigma-54 dependent transcriptional regulatorchromosome 1 CDS531262 1335 + 0.46367
VP0521 phosphoenolpyruvate-protein phosphotransferasechromosome 1 CDS536834 2247 + 0.463729
VP0538 response regulatorchromosome 1 CDS554637 729 - 0.452675
VP0539 conserved hypothetical proteinchromosome 1 CDS555397 1671 - 0.464991
VP0540 putative carbon starvation protein Achromosome 1 CDS557213 1485 - 0.461953
VP0557 putative glycosylasechromosome 1 CDS574209 1488 - 0.451613
VP0569 DNA-binding response regulator PhoBchromosome 1 CDS592203 690 + 0.46087
VP0570 histidine protein kinase PhoRchromosome 1 CDS592933 1299 + 0.4796
VP0699 GGDEF family proteinchromosome 1 CDS731917 1566 - 0.45977
VP0732 PhoH family proteinchromosome 1 CDS767799 1098 - 0.467213
VP0770 polar flagellar FlgNchromosome 1 CDS807670 426 - 0.455399
VP0773 chemotaxis CheVchromosome 1 CDS809390 927 + 0.443366
VP0774 chemotaxis methyltransferase CheRchromosome 1 CDS810328 828 + 0.451691
VP0854 putative transcriptional regulator, AraC/XylS familychromosome 1 CDS886715 3393 + 0.437371
VP0914 C4-dicarboxylate transport transcriptional regulatory proteinchromosome 1 CDS948138 1338 - 0.475336
VP0915 C4-dicarboxylate transport sensor proteinchromosome 1 CDS949480 1803 - 0.443705
VP0953 conserved hypothetical proteinchromosome 1 CDS993565 2004 + 0.442615
VP0962 hypothetical proteinchromosome 1 CDS1003421 1161 - 0.476314
VP0963 methyl-accepting chemotaxis proteinchromosome 1 CDS1004735 1992 - 0.463855
VP0988 conserved hypothetical proteinchromosome 1 CDS1031959 1935 - 0.447028
VP0999 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome 1 CDS1045013 777 + 0.446589
VP1021 conserved hypothetical proteinchromosome 1 CDS1069150 249 - 0.373494
VP1032 DNA-binding response regulator TorRchromosome 1 CDS1081364 714 + 0.455182
VP1049 hypothetical proteinchromosome 1 CDS1099986 1116 + 0.455197
VP1050 hypothetical proteinchromosome 1 CDS1101061 378 + 0.452381
VP1069 sensor histidine kinasechromosome 1 CDS1117611 2421 + 0.449401
VP1088 putative chemotaxis transducerchromosome 1 CDS1144081 1638 + 0.459707
VP1111 putative zinc-finger containing proteinchromosome 1 CDS1171086 267 + 0.453184
VP1136 putative transcription regulator TxRchromosome 1 CDS1195273 957 - 0.417973
VP1147 conserved hypothetical proteinchromosome 1 CDS1204598 1215 - 0.432099
VP1172 psp operon transcriptional activatorchromosome 1 CDS1229874 1011 - 0.474777
VP1173 phage shock protein Achromosome 1 CDS1231117 672 + 0.431548
VP1175 phage shock protein Cchromosome 1 CDS1231999 420 + 0.421429
VP1185 putative chemotaxis transducerchromosome 1 CDS1245445 1620 + 0.475309
VP1190 putative sigma-54 dependent transcriptional regulatorchromosome 1 CDS1251834 1530 - 0.475817
VP1201 putative sensor-kinasechromosome 1 CDS1263231 1689 + 0.451747
VP1202 putative two-component response regulatorchromosome 1 CDS1264909 597 + 0.403685
VP1211 sensor histidine kinasechromosome 1 CDS1271167 1350 - 0.458519
VP1212 DNA-binding response regulatorchromosome 1 CDS1272506 660 - 0.460606
VP1240 hypothetical proteinchromosome 1 CDS1307932 921 - 0.432139
VP1244 response regulatorchromosome 1 CDS1310727 498 - 0.441767
VP1245 response regulatorchromosome 1 CDS1311221 1941 - 0.439979
VP1255 GGDEF family proteinchromosome 1 CDS1325421 1338 + 0.452167
VP1375 sensor histidine kinasechromosome 1 CDS1458736 1338 + 0.473842
VP1376 putative chemotaxis protein CheYchromosome 1 CDS1460060 474 + 0.445148
VP1377 hypothetical proteinchromosome 1 CDS1460642 1800 - 0.452778
VP1378 putative HD-GYP domain containing proteinchromosome 1 CDS1462787 1212 + 0.452145
VP1391 putative transcriptional regulatorchromosome 1 CDS1491226 1632 - 0.470588
VP1400 hypothetical proteinchromosome 1 CDS1502624 2061 + 0.422125
VP1411 hypothetical proteinchromosome 1 CDS1517885 1515 + 0.438944
VP1423 conserved hypothetical proteinchromosome 1 CDS1528811 1266 - 0.461295
VP1427 conserved hypothetical proteinchromosome 1 CDS1533464 1125 + 0.446222
VP1441 GGDEF family proteinchromosome 1 CDS1549002 1542 + 0.437743
VP1469 putative LuxO repressor proteinchromosome 1 CDS1582277 1545 - 0.475728
VP1472 phosphorelay proteinchromosome 1 CDS1584093 345 - 0.469565
VP1476 putative anti-sigma F factor antagonistchromosome 1 CDS1588200 321 - 0.41433
VP1482 putative response regulatorchromosome 1 CDS1594829 972 + 0.447531
VP1483 hypothetical proteinchromosome 1 CDS1595800 963 + 0.42783
VP1486 methyl-accepting chemotaxis proteinchromosome 1 CDS1598362 1596 + 0.469925
VP1502 sigma-54 dependent response regulatorchromosome 1 CDS1610776 1452 + 0.47865
VP1503 sensor histidine kinasechromosome 1 CDS1612217 2040 + 0.471078
VP1535 putative stress proteinchromosome 1 CDS1645975 948 - 0.455696
VP1536 fumarate and nitrate reduction regulatory proteinchromosome 1 CDS1647102 747 - 0.424364
VP1547 sensor histidine kinase/response regulatorchromosome 1 CDS1656854 1731 + 0.398036
VP1607 putative activator of ProP osmoprotectant transporterchromosome 1 CDS1704198 630 - 0.426984
VP1608 conserved hypothetical proteinchromosome 1 CDS1704925 474 - 0.432489
VP1620 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome 1 CDS1719405 1029 + 0.478134
VP1628 putative methyl-accepting chemotaxis proteinchromosome 1 CDS1726224 1404 + 0.459402
VP1637 putative GGDEF family proteinchromosome 1 CDS1750867 1977 + 0.444107
VP1667 putative outer membrane protein PopNchromosome 1 CDS1783656 894 - 0.470917
VP1711 response regulatorchromosome 1 CDS1823001 687 - 0.474527
VP1712 putative sensor kinase CitAchromosome 1 CDS1823684 1620 - 0.47716
VP1725 conserved hypothetical proteinchromosome 1 CDS1839002 1881 - 0.476342
VP1734 DNA-binding response regulatorchromosome 1 CDS1849292 657 + 0.480974
VP1735 putative two-component sensorchromosome 1 CDS1849920 1431 + 0.471698
VP1754 hypothetical proteinchromosome 1 CDS1867735 2160 + 0.448148
VP1755 putative histidine kinasechromosome 1 CDS1870069 3156 + 0.451204
VP1768 conserved hypothetical proteinchromosome 1 CDS1883792 1509 - 0.424122
VP1876 hypothetical proteinchromosome 1 CDS1958900 1701 - 0.457378
VP1881 hypothetical proteinchromosome 1 CDS1965403 1716 + 0.434732
VP1892 methyl-accepting chemotaxis proteinchromosome 1 CDS1976393 1626 + 0.47048
VP1902 conserved hypothetical proteinchromosome 1 CDS1984821 1890 + 0.46455
VP1904 methyl-accepting chemotaxis proteinchromosome 1 CDS1987540 1884 - 0.481423
VP1907 transcriptional regulator, LuxR familychromosome 1 CDS1992131 639 - 0.463224
VP1908 sensor histidine kinasechromosome 1 CDS1992753 1365 - 0.457875
VP1945 transcriptional regulator, LuxR familychromosome 1 CDS2037468 645 - 0.455814
VP1962 putative transcriptional regulatorchromosome 1 CDS2053894 693 + 0.457431
VP1968 sensor protein LuxNchromosome 1 CDS2059377 2553 + 0.446534
VP1979 conserved hypothetical proteinchromosome 1 CDS2069643 2457 - 0.466829
VP1981 putative methyl-accepting chemotaxis proteinchromosome 1 CDS2074996 2097 - 0.482117
VP1983 putaive two-component response regulatorchromosome 1 CDS2077653 678 + 0.479351
VP1984 putative two-component sensorchromosome 1 CDS2078327 1305 + 0.481992
VP1985 hypothetical proteinchromosome 1 CDS2079712 1245 - 0.462651
VP2009 putative tetrathionate reductase complex: response regulatorchromosome 1 CDS2103438 612 - 0.482026
VP2010 putative tetrathionate reductase complex: sensory transduction histidine kinasechromosome 1 CDS2104070 1734 - 0.488466
VP2037 chemotaxis protein CheVchromosome 1 CDS2137312 954 - 0.448637
VP2064 phosphotyrosine protein phosphatasechromosome 1 CDS2166453 450 - 0.462222
VP2076 putative GGDEF family proteinchromosome 1 CDS2180836 1461 - 0.431896
VP2098 phosphorelay proteinchromosome 1 CDS2205557 339 - 0.424779
VP2099 LuxO repressor proteinchromosome 1 CDS2205898 1362 - 0.464758
VP2126 hypothetical proteinchromosome 1 CDS2233870 1164 - 0.445876
VP2127 hypothetical proteinchromosome 1 CDS2235142 1290 - 0.443411
VP2159 putative methyl-accepting chemotaxis transmembrane proteinchromosome 1 CDS2271346 2037 + 0.464899
VP2183 response regulatorchromosome 1 CDS2292125 1107 - 0.450768
VP2205 phosphohistidine phosphatasechromosome 1 CDS2316398 465 - 0.460215
VP2225 chemotaxis protein CheWchromosome 1 CDS2337996 495 - 0.448485
VP2228 chemotaxis protein CheBchromosome 1 CDS2340416 1110 - 0.513514
VP2229 chemotaxis protein CheAchromosome 1 CDS2341550 2235 - 0.497539
VP2230 chemotaxis protein CheZchromosome 1 CDS2343794 741 - 0.45749
VP2231 chemotaxis protein CheYchromosome 1 CDS2344653 381 - 0.406824
VP2244 polar flagellar hook-length control protein FliKchromosome 1 CDS2356132 1932 - 0.493271
VP2251 FlaMchromosome 1 CDS2364125 1410 - 0.492908
VP2252 FlaLchromosome 1 CDS2365571 1032 - 0.485465
VP2253 polar flagellar protein FlaKchromosome 1 CDS2366778 1467 - 0.476483
VP2352 cell division protein BolAchromosome 1 CDS2463876 309 - 0.433657
VP2357 putative transcriptional activator ChrRchromosome 1 CDS2468278 660 - 0.457576
VP2366 putative GGDEF family proteinchromosome 1 CDS2474893 921 - 0.440825
VP2424 hypothetical proteinchromosome 1 CDS2541870 756 + 0.415344
VP2446 c-di-GMP phosphodiesterase A-related proteinchromosome 1 CDS2565977 2040 + 0.465196
VP2478 sensory box sensor histidine kinase/response regulatorchromosome 1 CDS2605254 3387 + 0.462651
VP2500 DnaK suppressor proteinchromosome 1 CDS2641427 447 + 0.467562
VP2537 autoinducer-2 production protein LuxSchromosome 1 CDS2675642 519 - 0.454721
VP2546 carbon storage regulatorchromosome 1 CDS2688313 198 - 0.434343
VP2564 GTP pyrophosphokinasechromosome 1 CDS2708635 2220 - 0.480631
VP2567 sensor histidine kinase/response regulatorchromosome 1 CDS2712492 2799 + 0.470882
VP2575 sigma-E factor regulatory protein RseCchromosome 1 CDS2721912 471 - 0.4862
VP2576 sigma-E factor regulatory protein RseBchromosome 1 CDS2722382 963 - 0.456906
VP2577 sigma-E factor negative regulatory protein RseAchromosome 1 CDS2723341 639 - 0.488263
VP2629 methyl-accepting chemotaxis proteinchromosome 1 CDS2771153 1626 + 0.45695
VP2631 putative HD-GYP hydrolase domain containing proteinchromosome 1 CDS2781776 1254 - 0.42504
VP2672 nitrogen regulatory IIA protein PtsNchromosome 1 CDS2820717 447 + 0.46085
VP2683 conserved hypothetical proteinchromosome 1 CDS2832914 1377 + 0.485113
VP2708 MSHA biogenesis protein MshHchromosome 1 CDS2862567 2010 - 0.457214
VP2710 transcriptional regulator, LuxR familychromosome 1 CDS2865626 645 + 0.448062
VP2793 cyclic AMP receptor proteinchromosome 1 CDS2956816 633 + 0.442338
VP2827 methyl-accepting chemotaxis proteinchromosome 1 CDS2994794 1881 + 0.479001
VP2857 putative periplasmic protein CpxPchromosome 1 CDS3024258 513 - 0.473684
VP2858 transcriptional regulator CpxRchromosome 1 CDS3024961 690 + 0.498551
VP2859 sensor protein CpxAchromosome 1 CDS3025650 1404 + 0.505698
VP2866 transcriptional regulator, LuxR familychromosome 1 CDS3034505 630 + 0.487302
VP2876 conserved hypothetical proteinchromosome 1 CDS3046943 1827 + 0.480569
VP2888 putative sensory box/GGDEF family proteinchromosome 1 CDS3059835 1191 + 0.412259
VP2945 LexA repressorchromosome 1 CDS3149697 621 - 0.492754
VP2969 putative phosphatasechromosome 1 CDS3168649 495 - 0.50101
VP2972 conserved hypothetical proteinchromosome 1 CDS3170642 1224 - 0.473856
VP2979 GGDEF family proteinchromosome 1 CDS3177458 2487 - 0.479292
VP3065 putative cyclohexadienyl dehydratase precursor signal peptide proteinchromosome 1 CDS3273868 777 - 0.464607