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# Chlamydophila pneumoniae CWL029, CWL029

>gid:14921  CPn0068  CT360 hypothetical protein
MIKKFFIYSLIFSCSFSAPLKGICNEDVSSQSRIEEDPEVLITQLNELIE
TPIEEGKEIRNELQAISDGQKSSEEIEESCGTSDSEGLSEKTDKESSNEY
VLDFFDSMVQRLEGISKMCQSGQVAQIIDCFNREFDIRNRELELKNRELE
LREKDLEFKKSILDWNKEKVSRELAFQREQDIKQTLMLLKK
>gid:14951  CPn0095  S/T Protein Kinase
MGEVYLAYDPVCSRKVALKKIREDLAENPLLKRRFLREARIAADLIHPGV
VPVYTIYSEKDPVYYTMPYIEGYTLKTLLKSVWQKESLSKELAEKTSVGA
FLSIFHKICCTIEYVHSRGILHRDLKPDNILLGLFSEAVILDWGAAVACG
EEEDLLDIDVSKEEVLSSRMTIPGRIVGTPDYMAPERLLGHPASKSTDIY
ALGVVLYQMLTLSFPYRRKKGKKIVLDGQRIPSPQEVAPYREIPPFLSAV
VMRMLAVDPQERYSSVTELKEDIESHLKGSPKWTLTTALPPKKSSSWKLN
EPILLSKYFPMLEVSPASWYSLAISNIESFSEMRLEYTLSKKGLNEGFGI
LLPTSENALGGDFYQGYGFWLHIKERTLSVSLVKNSLEIQRCSQDLESDK
ETFLIALEQHNHSLSLFVDGTTWLIHMNYLPSRSGRVAIIVRDMEDILED
IGIFESSGSLRVSCLAVPDAFLAEKLYDRALVLYRRIAESFPGRKEGYEA
RFRAGITVLEKASTDNNEQEFALAIEEFSKLHDGVAAPLEYLGKALVYQR
LQEYNEEIKSLLLALKRYSQHPEIFRLKDHVVYRLHESFYKRDRLALVFM
ILVLEIAPQAITPGQEEKILVWLKDKSRATLFCLLDPTVLELRSSKMELF
LSYWSGFIPHLNSLFHRAWDQSDVRALIEIFYVACDLHKWQFLSSCIDIF
KESLEDQKATEEIVEFSFEDLGAFLFAIQSIFNKEDAEKIFVSNDQLSPI
LLVYIFDLFANRALLESQGEAIFQALDLIRSKVPENFYHDYLRNHEIRAH
LWCRNEKALSTIFENYTEKQLKDEQHELFVLYGCYLALIQGAEAAKQHFD
VCREDRIFPASLLARNYNRLGLPKDALSYQERRLLLRQKFLYFHCLGNHD
ERDLCQTMYHLLTEEFQL
>gid:14960  CPn0104  CT017 hypothetical protein
MRMLQISMLLLALGTAINSPAIYAADSQSVSFPEQLPSSFTGEIKGNHVR
MRLAPHTDGTIIREFSKGDLVAVIGESKDYYVISAPPGITGYVFRSFVLD
NVVEGEQVNVRLEPSTSAPVLVRLSRGTQIQPASQEPHGKWLEVVLPSQC
VFYVAKNFVANKGPIELYTQREGQKKIAMDLINSALNFAHIELEKSLNEI
DLEAIYKKINLVQSEEFKDVPGIQGLIQKALEEIQDAYLSKSLESQNTSI
ASSQCSTPKVSSSEVTTSLLSRHIRKQTALKTAPLTQGRENLEYSLFRIW
ASMQQGNDHSEALTQEAFYRAEQKKKQVLAGVLEVYPHVVKNNPGDYLLK
AQENTIAFLYGTSINLEQWLGKRVTVECLPRPNNHFAFPAYYVVGIKEAS
>gid:15016  CPn0156  hypothetical protein
MMHNIVVLSEEPGRSAFLGRTAFFPNKYPIAQGGVGIPSTIGNLFTIWYC
FYFYRAATPQSDHPDGCGFILLERLKELGAGFFYCDLRESNTTGFTLFFE
GSNKGVLKNHLFIRDE
>gid:15158  CPn0294  cAMP-Dependent Protein Kinase Regulatory Subunit
MNLIDRAFLLKKTIIFQSLDMDLLLTIADKTETIIFKPGSNVFSIGQPGF
SFYIIVEGYITISKEKLESPLNLKPLDCFGEESLFNNKPREYNASANTQV
RMLVLSKGQILNIVEECPSVALSFLELYAKQIKFREP
>gid:15259  CPn0397  PP2C phosphatase family
MDFDYFGLSDIGRVRARNEDFWQVNLMSQVVAIADGVGGRLGGDIASQEA
VTSLMELIDEQQSKLMGYGDDQYKETLKKILLEVNGVVYEHGQMEEHLQG
MGTTLSFIQFRKDRAWLFHVGDSRIYRIREGELRRLTEDHSLENQLKNRY
GLPKQSDKVYSYRHILTNVLGSRPYVMPDIRNLPCEKEDLYCLCSDGLTN
MVPDIDIRDILNQPATLEERGNALISLANTRGGDDNATVVLVRIQ
>gid:15342  CPn0481  hypothetical protein
MATSVPVTSSTSVGEANSSNERFTERTSRMYYAALVLGALSCLIFIAMIV
IFPQVGLWAVVLGFALGCLLLSLAIVFAVSGLVLGKTLEPSREATPPEIV
AQKEWTTQQDVLGNEYWRSELISLFLRGDLHESLIVDSKDRSLDIDQSLQ
NILKLEPLSTTLSLLKKDCVHINIILHLVRQWNLLGVDLSPEVTAHAEEL
LLFLIEEQYYSPDILKLIRYGDALQATSPLMDWADSGSFSVDADGVFSCR
REECSPEDALAQFDLLLALENPDRRFLKDSFLTYIWSSSFFEKFLHRHLE
SLQRKLPETAIDVARYEAQIQTFLSRYFQKLDLINAMSLDWGYNCAEGEK
CYESANQRLDNLFIAFSSSVPAMKRLFDKYGSVVRVDRRQIREQILSNTE
ILENESGFLCSLYEYPLSYLIDWAVLLDCVRGTEISLEDQADYTVCLQGL
DSMLSQFASRLQSGQKVLNPRDVLSEQAAVMLVHGLAAQGVSFQGLKALM
YLTAVPQRMWLGALPLFESFPVFNRMKEFLGESLGD
>gid:15577  CPn0703  S/T Protein Kinase
MDCRGGIPLPEPQVIGGYHVKKILSKKLRSRVVHGLHPETRHSTVIKVFS
PSPSFTSRSVYNFLKEAQSLHQITHPNIVKFHRYGKWQDCLYIAMEYIEG
ISLREYILAQFISLPQAIDIIFDIAQALEHLHSRNILHKDIKPENILITP
QGKIKLIDFGLADWDTEIQRAHPSVIGTPYYMSPEQRQGESHSPASDIYA
LGLLAYELILGHLSLGRVFLSLVPERISKILAKALQPSPNNRYSSTREFI
QDIHHYRMSGDMQEDLRIKDHTVALYEQLQTQRFWLAPETLRFPDFISGV
LYHQGYPLYPHAYDTLLEGDVFNLWLGYSPISNATIALSVVKSLVCQQDL
QRPLLDRVCEINECLIRMKIPIDEMGISILCLEISKENKELSWIACGKTV
FWIKRQGRVVQDFESFSPGLGKITSLQIRETKVAWEIGDEAVVCTLELEE
SVASLKTLSLAELQDRRQKAIFCPIESIHGGIQSRQHGSNSPSTLISLKR
IR
>gid:15586  CPn0712  FHA domain; (homology to adenylate cyclase)
MAVRLIVDEGPLSGVIFVLEDGISWSIGRDSSANDIPIEDPKLGASQAII
NKTDGSYYITNLDDTIPIVVNGVAIQETTQLKNEDTILLGSNQYSFLSDE
FDPQDLVYDFDIPEENFSNDSGDLSDSNEQGKDLEPRQTSETNHSPKPKE
KLTKDQGSSDPITSGDQELADAFLASAKAEKNQPRAKVAKKGLKESSNES
LNPKEQNAKDSPKGEERTNKPQNAIMEDNGASPRQDPQPKSAEPSLKNTA
RDETPLKENKPVEEKANKKATPDSPEKKDQPEEGSKKEGSKIEATPLDSQ
KESEDKEAEEAFVQEEEENLTEDNKEDSDSAADANDDTASDHTAEDNKET
PKKVENEKSAVLSPFHVQDLFRFDQTIFPAEIDDIAKKNISVDLTQPSRF
LLKVLAGANIGAEFHLDSGKTYILGTDPTTCDIVFNDLSVSHQHAKITVG
NDGGILIEDLDSKNGVIVEGRKIDKTSTLSSNQVVALGTTLFLLIDHHAP
ADTIVASLSPDDYSLFGRQQDAEALERQEAQEEEEKQKRATLPAGSFILT
LFVGGLAILFGIGTASLFHTKEVVPLENIDYQEDLAQVINQFPTVRYTFN
KTNSQLFLIGHVKNSTDKSELLYKVDALSFVKSVDDNVIDDEAVWQEMNI
LLSKRPEFKGISMHSPEPGKFIITGYVKTEEQAACLVDYLNIHFNYLSLL
ENKVVVETQMLKAIAGHLLQGGFANIHVAFVNGEVILTGYVNNDDAEKFR
AVVQELSGIPGVRLVKNFAVLLPAEEGIIDLNLRYPNRYRVTGYSRYGEI
SINVVVNGRILTRGDVIDGMTVTSIQPNAIFLEKEGLKYKIDYNK
>gid:15629  CPn0751  CT651 hypothetical protein
MFRCILFGIFLLTCFSSGGVLYYLFCSHDFSIGPKEKSRSVWIEEEKEFT
DSVLHHLPSQHQHLHILCFQGFLLQKQQKFSQAEKIFSKVYDEAQDGPFL
FKEEILGSRLINSFFLEKTDVMETILCLLNQRCPNSPYYHLFKALVCYKQ
KLYREVIEQLAYWQEEKTRALAPLLNISIEQLLTDFLLDYISAHSLIEQK
MFPEGRVILNRNINRLLKHECEWNAKTYDRIAILLSRSYFLELVESKSAD
IYFDYYEMVLFYLKKIYILEQCPYAELLPEEELVSLIMEHVFILPKDKLY
PLIQLLEMWQKHYVHPNSSLVVQILVDRFSTHMEGAIRFCEALVSFSGLE
ELHQQIITTFEELLSNKVQQIKTEEAKQCVALLHILDPSISISEKLALSS
DTLQNIVSGDDEQHTKLRNYLDLWEAIQSYDIDRQQLVHHLVYGAKDLWK
KGGNDEKALNLLQLVLRFTSYDIECESVVFLFIKQAYKQALSSHAIARLL
KLEKFISEANIPSIVISEAEKANFLADAEYLFAHEDYDKCYLYSMWLTKV
APSPQSYRLAGLCLMENKRYDEALEFLCMLSPNDSINDYKTQKALAFCQK
HQSKDRAAS
>gid:15643  CPn0765  CT647 hypothetical protein
MKKWISILILSFLSLLSILPVLAITINHVKISQRWSDLNSQILTLKVIRD
HEDQVIKHNARISKDRNNLSIESLNASCKQLRPLSKERERLNKLNSNSLL
AQSKEVWERKRALEKSNHQLVWNCEQMHNDFAFVRLEQATEMDNEDIESL
FSLFNPENPVAPLVFFTCWKMTKQTTPLGNEVWLTHAEAISRWI
>gid:15892  CPn1004  CT847 hypothetical protein
MSIQPVSNTTTKADKVIPDSTKVISDSITINKQSAFYFCISVMLRLSEST
TEYGKSILAVLEDNTIVQQQRVKELINLPLLKVPDLQKKDGSDDEYKNQN
EIQAYQSSNQQISANRQMIQQELSSAQQRAQANQKSVNSTTIESMQILQA
TSSMLSTLKELTIKANLTNSPSD
>gid:15893  CPn1005  CT848 hypothetical protein
MWIIDPLSAKKPLQAAINVPGTPITGGPNTATADDIIAKFSKDSNPLIVT
VYYVYQSVLVAQDNLSIIAQELQANSSAQTYLNNQEALYQYVSIPKNKLN
DNSSSYLQNIQSDNQAIGASRQAIQNQISSLGNAAQVISSNLNTNNNIIQ
QSLQVGQALIQTFSQIVSLIANI
>gid:15907  CPn1019  CT860 hypothetical protein
MTVSYQSISTPPPEGEFDIFVDGNATEEAVVAAEVQVALPAGEQYAMLRA
TSELCFGILTQSECALTQALPPKEKPLQEEQFLVKNGILMRSTSLPNLKP
GQSQQTSLASHRNPLAQQSTSSNSTGKASTETTSSSFPFFSCKAPEGDSS
VDKTFTVSVQTPKAQEQQEASASQSQAQFHVRSYSSSTIKEHSAKEKVSQ
STKSAETQKHTQTKSDATLSPMSLYSTLHKEVPQALSSTKSQQKDEEHRD
QRQQEGYEQEQEQEEGKKKTPWCTVESLQQTSSSNQVYESYTPIIPDPIV
EFALSESQLSVLAGKRVTNLDVLRICTELMKLMLKSRANDTMTRLEEREL
MEREAHELAASYSRQAKYARWLGIATATLGILGAIAPMVGEISGDSILGF
VQRISGRFKDATAKTFFKGIGKVFTSLSQLTEAASKVHELSESAVRAVAE
YRKEVFRMRQDEVTRTIEEVKDNWKSMDNFLLNILQTEHDAARSLYQ
>gid:15343  artJ  Arginine Periplasmic Binding Protein
MIKQIGRFFRAFIFIMPLSLTSCESKIDRNRIWIVGTNATYPPFEYVDAQ
GEVVGFDIDLAKAISEKLGKQLEVREFAFDALILNLKKHRIDAILAGMSI
TPSRQKEIALLPYYGDEVQELMVVSKRSLETPVLPLTQYSSVAVQTGTFQ
EHYLLSQPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNL
VATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKK
WQLSEVAYE
>gid:15451  atoC  2-Component Regulator
MAIKNILVVDDEPLLRDFLSELLTSQGFIPDTAENLRNALQMIRSRDYDL
VISDMSMPDGSGLDLIKIIKQSSPHTPVLVVTAYGSIENAVEAMHQGAFN
YLTKPFSSEALFAFISKAEELKNLVHENLFLHSQTTPDSHPLIAESKAMK
DLLAIAKKAASSSANIFIHGESGCGKEVLSFFIHHNSPRANHPYIKVNCA
AIPETLLESELFGHEKGAFTGATTKKAGRFELAHKGTLLLDEITEVPVNL
QAKLLRAIQEKEIEHLGGTKTLSVDVRILATSNRKLKEAIDDKSFRQDLY
YRLNVIPLHLPPLRDRQDDILPLANYFLNKFCRMNNTPLKTLSPKAQELL
LNYPWPGNIRELSNVLERVVILENTSLLTEDMLALA
>gid:15449  atoS  2-Component Sensor
MNVPDSKNLHPPAYELLEIKARITQSYKEASAILTAIPDGILLLSETGHF
LICNSQAREILGIDENLEILNRSFTDVLPDTCLGFSIQEALESLKVPKTL
RLSLCKESKEKEVELFIRKNEISGYLFIQIRDRSDYKQLENAIERYKNIA
ELGKMTATLAHEIRNPLSGIVGFASILKKEISSPRHQRMLSSIISGTRSL
NNLVSSMLEYTKSQPLNLKIINLQDFFSSLIPLLSVSFPNCKFVREGAQP
LFRSIDPDRMNSVVWNLVKNAVETGNSPITLTLHTSGDISVTNPGTIPSE
IMDKLFTPFFTTKREGNGLGLAEAQKIIRLHGGDIQLKTSDSAVSFFIII
PELLAALPKERAAS
>gid:15396  dksA  DnaK Suppressor
MPLSDDEIEQFKKRLLEMKAKLSHTLEGNAQEVKKPNEATGYSQHQADQG
TDTFDRTISLEVTTKEYELLRQINRALEKINESSYGICDVSGEEIPLARL
IAIPYATMTVKAQEQFEKGLLSGN
>gid:15471  fliY  Glutamine Binding Protein
MKIKFSWKVNFLICLLAVGLIFFGCSRVKREVLVGRDATWFPKQFGIYTS
DTNAFLNDLVSEINYKENLNINIVNQDWVHLFENLDDKKTQGAFTSVLPT
LEMLEHYQFSDPILLTGPVLVVAQDSPYQSIEDLKGRLIGVYKFDSSVLV
AQNIPDAVISLYQHVPIALEALTSNCYDALLAPVIEVTALIETAYKGRLK
IISKPLNADGLRLAILKGTNGDLLEGFNAGLVKTRRSGKYDAIKQRYRLP
>gid:14962  phoH  ATPase
MKKTMVIDTSVFIYDPEALFSFENTRIIIPFPVIEELEAFGKFRDESAKN
ASRALSNIRLLLENAKTKVTDGVLLPSGSELRIEVAPLSNDDRRGKLLTL
ELLKIIAKREPMVFVTKSLGRRVRAEALQIESRDYESKRFSFRSLYRGFR
ELQVSQEDIENFYKNGYLDLPLDVVSSPNEYFFMSAGENHFALGRYYVSE
GKIIALKAMDKSVWGIKPLNTEQRCALDLLLRDDVKLVTLIGQAGSGKTI
LALAAAMHKVFDKETYNKVLVSRPIVPMGRDIGFLPGLKEDKLMHWMQPI
YDNMEVLFSINQMGNSSEALQALMDAKKLEMEALTYIRGRSLPKAFIIID
EAQNLTPHEIKTIISRAGKGTKIVLTGDPTQIDSLYFDENSNGLTYLVGK
FHHLALYGHMFMTRTERSELAAAAATIL
>gid:14913  ptsN_1  PTS IIA Protein
MPSYCQNQQDFSLFSLLSPRLVMFLGKHSRDEILQDLTDLVDAAGLLEDK
QAFFDALVRRENIMSTGIGMGVAIPHGKLESCSNFFIAIGIHTQGILWDA
IDGALVRLVFLIGGPENAQAEYLKLLSTLTLSLREESRRQQLLQVNTIEE
VMNVFVGM
>gid:14914  ptsN_2  PTS IIA Protein + HTH DNA-Binding Domain
MDLKLDEVASLLDVSEHTVLQWLKEGAIPSYSMNNEYRFSREEIENWLLH
NQALMIQERGEDKEALKDLSLKYSLYKAIHRGGVLCDVVVHSKEEALQYA
SKYIAQKFQLDESVLFEMLSHRENLMSTGIGEGIALPHAKDFLINAYYDI
VVPMFLAEPIEYGALDGKPVGILFFLFACQDKSHLNLVNKIVHLGMSLNA
RSFFKNYPNKDQLLAYVKEWESQTH
>gid:15672  rbsU  sigma regulatory family protein-PP2C phosphatase (RsbW antagonist)
MIPFTKTIGFRLWLACAVAIIAPLGINIVWLNLDQYRTIVSAISTALKEN
AAFKANTLTQIVPLNVDVLSLFSDVLDLDAGIPETPNVLLSNEMQKVFQG
IYNEISLIKVFPNGDKIVVASSIPEHLGENYNHKIDIPKNTPFLAALKQS
PKNQEVFSVMQANVFDAKTQELQGILYTTFSAESLLKDLLINKQSYLTVK
TAILSKYGVILKASDPALHLHTVYPDMTKEKFCQVFLNDDPCPIDSELGP
LTLSPLDIGENFYSFKIKDTEIWGCIENVPSIDIAVLSYAKKEESFAPLW
RRARMYTAYFFCILLGSLIAFIVARRLSLPIRKLATAMIESRKNKNCLYT
DDSLGFEINRLGHIFNAMVENLHKQQHLAKTNFEMKENAQNALHLGEQAQ
QRLLPNTLPSYPHIELAKAYIPAITVGGDFFDVFVVGEGSKARLFLIVAD
ASGKGVNACGYSLFLKNMLRTFLSRSSSLQQAIQETSRLFYNNTKNSGMF
VTLCVYCYHQTSNTMEYYSCGHPPACYLDPDGETSWLFHPGMALGFLPEV
ANITSKLFHPKPGSLFVLYSDGITEAHNNNNDMFGEERLQAAIQGLTGKS
AADAVHRLMLSVKTFVGNSHQHDDITLLILKVLES
>gid:15372  rsbV_1  Sigma Regulatory Factor
MSDIQKEEHGSTTIFHLHGKLDGISSPEVQENISQSLAAGSKNIILDCAH
LDYMSSAGIRVLLQSYHQVGQHSGKIVLTTVPKTIEQTLYVTGFLSYFKI
FNTVDEAIQTLNKDGD
>gid:15794  rsbV_2  Sigma Regulatory Factor
MNLSAKEYGDIIVIYLQGSLDAVSVPSVQEYLEQFIQKKHLKIALNFTDV
SYISSAGIRLLLSNFKLVQSLGGKMCLCCVKESVTEVMRIAGLDQLILLC
QSEQECLSKL
>gid:15540  rsbW  sigma regulatory factor-histidine kinase
MTFFEGETVFPAVLSELHSMLDLIKRAGKQSKCPQEKLLKLELACEELLV
NIISYAYQGENSPGTIAISCISHRGDLEVVIKDHGPSFNPLAVSINIQED
LPLEQRKLGGLGIFLAKSSVDEFLYAREDHCNIVHLKMLNGQHS
>gid:15628  tctD  HTH Transcriptional Regulatory Protein + Receiver Doman
MIGDKIILFVTEDLSLSSQLKDLASQRSDYQILVSPVFPTSFESVAIFCE
YLLLPEQIFSPGIFPEEDLIVLFDTFQEEAITKVLNQGATGYLLRPITAK
VLDAVIRAFLRQHEVLEHSIPDTMTFGDHTFRVLNLVIESPEGSVYLTPS
EAGILKKLLINRGHLCLRKNLLAEIKGNTKEIIARNVDVHIASLRKKLGP
YGSKIVTIRGVGYLFSDDDSIPLQNHDNTAHPNEE