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# Phage Gifsy-1

>SC4441 putative inner membrane protein
MKQLNGGNVYRPTGKEKNLQAILNIHRHFIQNISPVTITAGKTLDIKIDN
QSHILLITKGAIKVCRRIDSIVMGCGVSPMILGLVDAYADLYQLEENSDV
FFIAETTCEYYPVPVKDFVEIADEKHLWRDISNILMYRIAFMTNRDRNLI
GQDAYSQIKALLLELWSYPESSRFEINAQNFIQQRTGLSRSRIMQVLSEL
KAGDYIKILHGRLLELRNLPVSF
>SC2596 putative bacteriophage protein
MNAETIKDFLVSLGFGIDEAGYEKFESVLAGVTANAIKTGLAVEGAALSV
VAFTAKIASGLDNLYWASQRTGATVQGIQSIGYAVSQVGGSVDAARTSLE
SLSRFVRNNPGAEGFLNRLGVQTRDASGNMRDMAAIFTGVGQKLSSMPYY
RANQYAQMLGIDENTLMAMRRGIGQFSAQYSEMTKAIGFNADQAAVSSNR
FMTSLKAFGEMAGMARDKIGSNLAEGMAGSIDNLRKRILENFPKIESTIT
KIVKGILWLGDIVGRVAFRIVEGVGDIIDWWGKLDKETKTLIEVIGGLVV
AMRILNSTFWMSPVGLITGLIVAFGLLWEDYKTWKEGGNSLIDWEKWQPA
IDKAKDAMVWLRDHLLELKDSIGGWKTSLELLATFIAGAWISKVTGAFAR
LAGIPMPPWLKGWMAYAAYLYDDRENIVASAQSSIDYAKQNIGDGMRALG
IDTDFGRNPHTVKGANIQPDILGAEPVQHAQSAKRTSADRNNNPGNIRPV
GGNGFRFFESALQGWEAMKNQLMRYFTGKTTGRALQTIQDIVSTWAPAGD
NNDPKMYAQDVAKWMGVLPNTVLNLANPETMAALMQSMARKEGYSNWNSP
LAYQAAGGSLNQQTVINVHGVNNPQEAANLIADKQGAVNARAVQQLKGPA
>SC2274 sensory histidine kinase in two-component regulatory system with RcsB, regulates colanic capsule biosynthesis
MKYLASFRTTLKVSRYLFRALALLIWLLIAFVSVFYIVNALHQRESEIRQ
EFNLSSDQAQRFIQRTSDVMKELKYIAENRLTAENGVMSSRARDDKMVVP
DFEPLFADSDCAAMGSAWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGS
DNLCMANFGLREMPVERDDALKALHERIMKYRNAPQEESGNNLFWISQGA
RQGVGYFYALTPVYLANRLQALLGVEQSIRMENFFTPGSLPMGVTIIDEN
GHSLISLTGPDGNIKAEPRWMQERSWFGYTPGFRELVLKKSLPPSSLSIV
YSVPVDLVLERIRILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQ
RLEEHEQFNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQ
RLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRV
KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL
PKGVERLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMN
HITANYLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKF
TDIGCIVLHVRCDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRN
FQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPLYGAQYPVKKS
VEGLAGTCCWLAVRNTSLCQFIETSLARSGVHTQRYEGQEPAADDILIVD
DALEHTWQGRAAVVFCRRHIGIPLERAPGEWVHSVASVHELPALLARIYS
IELDSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQ
CKTANDGVDALNVLSKNAIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVV
GVTANALAEEKQRCLESGMDSCLSKPVTLDVLKQTLAVYAERVRKTRA
>SC0390 putative response regulator
MINSLSEQLPLKTIGIVLTDDYYTYLGIASLFEDGKCFMFPLNGEYNSCQ
ISASEDIIIIIDGRVLIQGGWKGFKALMQHYPHARRIWLTRRDIGKLYPH
GCDRDPDIDPDLAKPVFIEHFIKYACANDVAVGELAPLTKKEEELLWHFL
YKKSMSQIASSYGMSRKTLYIHRLRICRKYGFKRFFHLLFIYQRSRHIFA
SKICRVDKNADQA
>SC0105 hypothetical protein
MKKVFLLAALFAMSNSSFAAMAESCQQYFNDIDALVEQAAETSEQAKQQF
DAMKPQLEASKKQLKTVAASDQDAACKQALASMVQIKQALGLK
>SC1276 putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
MRAIEWIFPHGSRFVEVDMTGSASSVLKTDTRLLSENLFLNYGLESLFKD
VAIIAGNVNYIIFDIDDYYTVQQYITSTFKTVLIGIVTHNEYNFIDEHHA
IYRIKVDASIAEWRELLILAAAGQFFPRSEKVRLTANERNVLAMLVKGMD
IRQISCELNVHLKTIYSVRYHVLTKLGCRTVLDYQILSVSKAFMHWLTIN
NVDNVISRVNSKVIA
>SC1628 putative periplasmic binding protein
MLSKKFGLSMIVLGIMSSSAFADSIVEGRTLNVAVSPTSPPMLFKSADGK
LQGIDLELFSSYCQSRHCKLNITEYA
>SC3705 putative phosphotransferase system mannitol/fructose-specific IIA domain
MQDIHFRRHYVRHLPKEVSQNDIIKALASPLINDGMVVSDFADHVITREQ
NFPTGLPVEPVGVAIPHTDHRYVRQNAISVGILAEPVNFEDMGGEPDPVP
VRVVFMLALGESNKQLNVLGWIMDVIQDEDFMQQLLVMNDDEIYQSIYTR
ISERGEV
>SC4064 aceK, isocitrate dehydrogenase kinase/phosphatase, also has ATPase activity
MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQQAMKSR
IHLYDHHVGLVVEQLRCITDGKSTDADFLLRVKEHYTRLLPDYPRFEIAE
SFFNSVYCRLFDHRSLTPERLFIFSSQPERRFRTIPRPLAKDFFPDHGWE
TLLMRILSDLPLRLPWQNKSRDIRYIIAHLTETLGEDALPRCHVQVANEL
FYRNKAAWLVGKLTTPDGTLPFLLPIHRTDEGELFVDTCLTTTAEASIVF
GFARSYFMVYAPLPAALVEWLREILPGKTTAELYMAIGCQKHAKTESYRE
YLCYLAESDEKFIEAPGIRGMVMLVFTLPGFDRVFKIIKDKFAPQKEMSA
AHVRACYQLVKEHDRVGRMADTQEFENFVLDKRQIDPALMALLRQEAPEK
ITDLGEHIVIRHLYIERRMVPLNIWLEQVEGQQLRDAIEEYGNAIRQLAA
ANIFPGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPARYPEDEL
ASEPWYSVSPGDVFPEEFRHWLCADPRIGPLFEEMHADLFRADYWRALQT
RIKEGHVEDVYAYRRRQRFSVRYGAISSTANSS
>SC3163 aer, aerotaxis sensor receptor, senses cellular redox state or proton motive force
MSSHPYVSQLNTPLDDDTTLMSTTDLESYITHANDTFVQVSGYQLNELLA
QPHNLVRHPDMPKAAFADMWYTLKQGEPWSGIVKNRRKNGDHYWVRANAV
PMIREGRVTGYMSIRTRATDDEIAAVEPLYQALNEGRCSKRIHKGLVVRQ
GLLGKLPAMPVRWRVRSIMGLMAVMLVLALFGTDASWQALLLGALAMLAG
TALFEWQIVRPIENVATQALKVATGERNSVQHLNRSDELGLTLRAVGQLG
LMCRWLINDVSSQVSSVRNGSERLAKGNNDLNEHTRQTVENVQETVTTMN
QMAESVKLNSETASAADKLSMAASSAATQGGEAMDTVIKTMDDIAHSTQR
IGTITTLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRS
ANAANDIRKLIDASATKVQSGSEQVHAAGRTMDDIVAQVQNVTLLIARIS
QSTQEQTDGLSSLTRAVDELNRITQKNAALVEESAQVSAMVKHRASRLED
AVTVLH
>SC0083 apaH, diadenosine tetraphosphatase
MATYLIGDVHGCYDELIALLQQVEFTPDTDTLWLTGDLVARGPGSLDMLR
YVKSLGNSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLN
WLRRQPLLQVDEEKKLIMAHAGITPQWDLQTAKECARDVEAVLSSDSYPF
FLDAMYGDMPNNWSPELSGLARLRFITNAFTRMRYCFPNGQLDMYSKASP
ENAPAPLKPWFAIPGPVSEAYSIAFGHWASLEGKGTPEGIYALDTGCCWG
GELTCLRWEDKQYFVQPSNRQMDMGEGEAVNA
>SC4443 arcA, response regulator (OmpR family) in two-component regulatory system with ArcB (or CpxA), regulates genes in aerobic pathways
MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINL
VIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRS
LIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRT
VDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLQD
>SC3266 arcB, aerobic respiration control sensor protein
MKQIRMLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQV
ESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRER
DLKLNVQLKDNIAQLNQEIVDREKAEAELQETFEQLKVEIKEREEAQIQL
EQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKP
EDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY
DRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTISHELRTPLNG
IVGLSRILLDTNLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQ
LDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLR
QILWNLISNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKI
FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFT
LTVHAPAVAEEVEDAFDEDDMPLPALHVLLVEDIELNVIVARSVLEKLGN
SVDVAMTGKAALEMFAPGEYDLVLLDIQLPDMTGLDIARELTRRHTREDL
PPLVALTANVLKDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDATDKEE
STVTPEESDKAQALLDIPMLEQYIELVGPKLITDGLAVFEKMMPGYLSVL
ESNLTARDKKGVVEEGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNV
AEWIEEMKQEWQHDVAVLKAWVANAEKK
>SC2356 argT, ABC superfamily (bind_prot), lysine/arginine/ornithine transport protein
MKKTVLALSLLIGLGATAASYAALPQTVRIGTDTTYAPFSSKDAKGEFIG
FDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQ
QEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYAND
NWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEY
AFAGPSVKDKKYFGDGTGIGLRKDDTELKAAFDKALTELRQDGTYDKMAK
KYFDFNVYGD
>SC0882 artI, ABC superfamily (bind_prot), arginine transport system
MLCPPSDRSVQKLSLSLRFGTMTMKKVLIAALIAGFSLSATAAQTIRFAT
EASYPPFESMDANNKIVGFDVDLANALCKEIDASCTFTNQAFDSLIPSLK
FRRFDAVMAGMDITPEREKQVLFTTPYYDNSALFVGQQGKYTSVDQLKGK
KVGVQNGTTHQKFIMDKHQEITTVPYDSYQNAKLDLQNGRIDAVFGDTAV
VTEWLKANPKLAPVGDKVTDKDYFGTGLGIAVRQGNTELQQKFNTALEKV
KKDGTYETIYNKWFQK
>SC0879 artJ, ABC superfamily (bind_prot), arginine 3rd transport system
MKKLVLAALLASFATGSIAAEKINFGVSATYPPFESLDASNKIVGFDIDL
ATALCKQMQAECTFTNHAFDSLIPALKFRKYDAVISGMDITPERSKQVAF
SNPYYANSALVIAKKDTYKTFTDLKGKRIGMENGTTHQKYLQDKHPEVKT
VAYDSYQNAIIDLKNGRIDGVFGDTAVVNEWLKTNPQLGPATEKVTDPQY
FGTGLGIAVRPDNKALLEKLNNALAAIKADGTYQKISDQWFPQ
>SC4230 artJ, putative arginine-binding periplasmic protein
MLLASLSVHAASVSARTLHFGTSATYAPYEFVDADNKIVGFDIDVANAVC
KEMQAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYY
EGLSAVVVTRKGAYHTFADLKGKKVGLENGTTHQRYLQDKQQAITPVAYD
SYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKG
LGIAVRKGNDALLQEINAALDKVKASPEYAQMQEKWFTQ
>SC2133 baeR, response regulator in two-component regulatory system with BaeS (OmpR family)
MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKLLPYV
RQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGL
EIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLMIDESRF
QASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLYDDYRVVTDRT
IDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRLV
>SC2132 baeS, sensory kinase in two-component regulatoyr system wtih BaeR
MKVWRPGITGKLFLAIFATCIVLLISMHWAVRVSFERGFIDYIKHGNEQR
LQMLGDALGDQYQQHGNWRFLRNNDRFVFQILRSFEHDNDRDKPGPGMPP
HGWRTQFWVVDQNGRVLVGPRGPVPHDGTRRPILVNGVEVGAIIASPVER
LTRNTDINFDMQQRRASWMIVALSTLLAALATFLLARGLLAPVKRLVEGT
HRLAAGDFTTRVTPTSADELGKLAQDFNQLASTLEKNQQMRRDFMADISH
ELRTPLAVLRGELEAIQDGVRQFTPESVTSLQAEVGTLTKLVDDLHQLSL
SDEGALAYQKTTVDLVPLLEVAGGAFRERFTSRGLTLHYALPDSMTVFGD
PDRLMQLFNNLLENSLRYTDSGGGLHISAEQRDKSLFLTFADSAPGVSDE
QLQKLFDRFYRTEVSRNRASGGSGLGLAICVNIVHAHNGHLHAAHSPFGG
VSITVELPLDRDLQREV
>SC2898 barA, sensory histidine kinase
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIE
PLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSN
FHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADA
KNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMR
DVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAY
HEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANM
SHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLD
FSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPD
NVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIR
DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDI
SFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQ
CTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLA
KAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYC
QLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSG
HQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAH
AMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPA
EFIFNPNVTLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVG
ENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFL
ELLDEMDNVAREAKKILG
>SC4171 basR, response regulator in two-component regulatory system with BasS (OmpR family)
MKILIVEDDTLLLQGLILAAQTEGYACDGFSTVRAAEHSLESGHYSLMVL
DLGLPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLV
KPFALEELHARIRALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTL
TPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDK
VGKSRIRTVRGFGYMLVATEES
>SC4170 basS, sensory kinase in two-component regulatory system with BasR
MSLMRFQRRAMTLRQRLMLTIGLILLVFQLISTFWLWHESTEQIQLFEQA
LRDNRNNDRHIMHEIREAVASLIVPGVFMVSLTLLICYQAVRRITRPLAE
LQKELEARTADNLAPIAIHSSTLEIESVVSAINQLVTRLTTTLDNERLFT
ADVAHELRTPLSGVRLHLELLSKTHNVDVAPLIARLDQMMDSVSQLLQLA
RVGQSFSSGNYQEVKLLEDVILPSYDELNTMLETRQQTLLLPESAADVVV
RGDATLLRMLLRNLVENAHRYSPEGTHITIHISADPDAIMAVEDEGPGID
ESKCGKLSEAFVRMDSRYGGIGLGLSIVSRITQLHQGQFFLQNRTERTGT
RAWVLLKKA
>SC4400 bglJ, transcriptional regulator (activator) of bgl operon (LuxR/UhpA family)
MENRISKRNVALVEKCVMSTIGIKGLFDAMPDCRHTLHIFSKPSAFYKAA
LKTPFSAVIFSLSALRTERRTGLSSLTELAINYPHMRRLVIADDDAEARL
ISALSPLPLDGVISKASPLDVLQDALFTSLNSARRTTERTDNLWELHQNC
MLSPTEREILRFMSNGYSMPQIAVQLECNIKTIRAHKFNVMSKLGVSSDA
GLLDAADILLYLRAGDATALQHRV
>SC0488 bolA, morphogene; putative regulator of murein genes (BolA family)
MSNIEEKLRTAFDPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERF
LNRHRMIYGTLTAELSTTVHALALHTYTLKEWEGLQDTIFASPPCRGAGS
IA
>SC2489 cdaR, putative regulatory protein
MLRKHYLKGYTARQIVQRAMKIIPYSVNVMDEHGVIIASGEPSRLRQRHE
GAILALKENRIVEIDSATANQLKGVRSGINLPISFHEQLIGVVGITGEPE
EVRAYAELVKMAAELVIEHMVLIEQRQWDKRYREELINQLILRENSTESL
RSMAAYLGIDLAVPRVVLIIELSQPDREALRNVMDYFENHARNHLVTFTE
FNELIIIKPITLKEGKWNTRQEMGELQIFKSWAASSGFSRILVGGYFAGE
TGLHRSLLTARATQAMAKRQKLRSQYIFYHDHALPALLSGLSESWQVQEL
SRLWLQLAQHDAKGVLQQTLRTWFEHNCDLTQTAKALHIHVNTLRYRLQR
CEDITHIKINELKSTLWLYIGMELQAESVPSDKLPLPGRIEIC
>SC0210 cdaR, putative inner membrane protein
MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEG
ALLVLSQGRVVDIDNAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPEH
LRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALV
EWAQRLGIDLNQPRVAAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNL
IAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLISRMKDNGQLRFRVAL
GNYFTGLGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRG
GWQANELARPLVKLKAMDNNGLLRRTLTAWFRHNVQPLATSKALFIHRNT
LEYRLNRISELTGLDLGNFDDRLLLYVVLQLDEQR
>SC1928 cheA, sensory histitine protein kinase, transduces signal between chemo-signal receptors and CheB and CheY
MSMDISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSI
KGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQE
QLDAYKNSEEPDAASFEYICNALRQLALEAKGETTPAVVETAALSAAIQE
ESVAETESPRDESKLRIVLSRLKANEVDLLEEELGNLATLTDVVKGADSL
SATLDGSVAEDDIVAVLCFVIEADQIAFEKVVAAPVEKAQEKTEVAPVAP
PAVVAPAAKSTAHEHHAGREKPARERESTSIRVAVEKVDQLINLVGELVI
TQSMLAQRSNELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVF
SRFPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLD
HGIEMPEKRLEAGKNAVGNLILSAEHQGGNICIEVTDDGAGLNRERILAK
AMSQGMAVNENMTDDEVGMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQ
EMGGHVEIQSKQGSGTTIRILLPLTLAILDGMSVRVAGEVFILPLNAVME
SLQPREEDLHPLAGGERVLEVRGEYLPLVELWKVFDVDGAKTEATQGIVV
ILQSAGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAATILGDGSVAL
IVDVSALQGLNREQRMAITAA
>SC1924 cheB, methyl esterase, response regulator for chemotaxis (cheA sensor)
MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNP
DVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELG
AIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAHKPMAAPATLKAG
PLLSSEKLIAIGASTGGTEAIRHVLQPLPLSSPAVIITQHMPPGFTRSFA
ERLNKLCQISVKEAEDGERVLPGHAYIAPGDKHMELARSGANYQIKIHDG
PPVNRHRPSVDVLFHSVAKHAGRNAVGVILTGMGNDGAAGMLAMYQAGAW
TIAQNEASCVVFGMPREAINMGGVSEVVDLSQVSQQMLAKISAGQAIRI
>SC1926 cheM, methyl accepting chemotaxis protein II, aspartate sensor-receptor
MPDGVAPFGNIHRYASTNGESASSPPAPSPCILRRHRRCDTVIVNIVFRN
NVFPFCKSKVITAGADNVDNSLSGRCLMFNRIRVVTMLMMVLGVFALLQL
VSGGLLFSSLQHNQQGFVISNELRQQQSELTSTWDLMLQTRINLSRSAAR
MMMDASNQQSSAKTDLLQNAKTTLAQAAAHYANFKNMTPLPAMAEASANV
DEKYQRYQAALAELIQFLDNGNMDAYFAQPTQGMQNALGEALGNYARVSE
NLYRQTFDQSAHDYRFAQWQLGGLAVVLVLILMVVWFGIRHALLNPLARV
ITHIREIASGDLTKTLTVSGRNEIGELAGTVEHMQRSLIDTVTQVREGSD
AIYSGTSEIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQ
ASQLAQSASETARHGGKVVDGVVNTMHEIADSSKKIADIISVIDGIAFQT
NILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIEDSV
SRVDTGSVLVESAGETMTDIVNAVTRVTDIMGEIASASDEQSRGIDQVAL
AVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFRLASRPLAVN
KPEMRLSVDAQSGNTPRPLAAGDDANWETF
>SC1925 cheR, glutamate methyltransferase, response regulator for chemotaxis
MTSSLPSGQTSVLLQMTQRLALSDAHFRRICQLIYQRAGIVLADHKRDMV
YNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTNLTAFFREA
HHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKV
FASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQ
ELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVP
LLKPDGLLFAGHSENFSNLVREFSLRGQTVYALSKDKA
>SC2314 cheV, putative chemotaxis signal transduction protein
MDNFQKDIDDRANLTLSNRFELLLFRLGTSLHEQKSELFGINVFKLREIV
PMPAFTRPAGMKAPLLGMVNIRDQVIPVIDLPAVAGCKPETGLNILLITE
YARSVQAFAVESVENIMRLDWQQVHTAEKAVNGRYITSIACLDDNKETNN
LALVLDVEQILYDIVPSSHDLRATNLKTNKFYITPGAVAIVAEDSKVARA
MLEKGLNAMGIPHQMHVTGKDAWERIQQLAQEAEAEGKPISEKIALVLTD
LEMPEMDGFTLTRKIKTDERLKKIPVVIHSSLSGSANEDHIRKVKADGYV
AKFEINELSSVIQEMLERAATNSQGPLISRKSA
>SC1927 cheW, purine-binding chemotaxis protein; regulation
MTGMSNVSKLAGEPSGQEFLVFTLGNEEYGIDILKVQEIRGYDQVTRIAN
TPAFIKGVTNLRGVIVPIVDLRVKFCEGDVEYDDNTVVIVLNLGQRVVGI
VVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLTGLGALGERMLILVNIEKL
LNSEEMALLDIAVSHVA
>SC1923 cheY, chemotaxis regulator, transmits chemoreceptor signals to flagelllar motor components
MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG
FGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQ
AGASGYVVKPFTAATLEEKLNKIFEKLGM
>SC1922 cheZ, chemotactic response; CheY protein phophatase
MLRDSLRELGLDQAIAEAAEAIPDARDRLDYVVQMTAQAAERALNSVEAS
QPHQDAMEKEAKALTQRWDEWFDNPIELADARELVTDTRQFLRDVPGHTS
FTNAQLLDIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENIPEQSA
RPKRENESLLNGPQVDTSKAGVVASQDQVDDLLDSLGF
>SC0047 citA, putative transcription regulator, histidine kinase for citrate
MQENTVIKYLNTNMFIREITRWFARRSFQNRIFLLILFTSTIVMLAITWY
LTDITKERLHYQVGQRALIQAMQISAMPELVEAVEAHDLSRIKALIDPMR
SFSDATYITVGNEKGQRLYHVNPDEIGKYMEGGDSDDALYNAKSYVSVRK
GSLGSSLRGKSPIQDSTGKVIGIVSVGYTLEQLESWLNLQISSLLFPMAL
LLLVLLYCARRFSLHIKKQMLNMEPQQLSQLLIQQSVLFESVFEGLIAID
SHHRITAINQTARRLLNLSQPESELIGYAIHHVVLPEAFFYDAPQKNKKD
EIVTFNQMKVIASRMAVIIDNQPQGWVISFRNEDDINTLSLQLSQVRQYA
DNLRTVQHEHRNLISTIAGLLFLKRYDNALALIQQQSESHQKVLDFISHN
FRDHHLAGLLIGKYYRAKELGLELIFDPSSFVEHLPSSLSHNEWISIVGN
LLDNAYNATLLNREGSRQIECLINSEGNEVIIEVADQGCGIDENIRQHIF
ERGVTTHNNGDHGIGLWLVHSYVKQANGDIIVDNNNPFGTIFTLYIPFTR
EE
>SC0046 citB, putative transcription regulator sensor for citrate
MDSITTLIVEDEPMLAEILVDTIKIFPQFSIVGIADKLESAKKQIRLYQP
QLILLDNFLPDGKGIDLIRHTISTNYTGRIIFITADNHMDTISDALRMGV
FDYLIKPVHYQRLQHTLERFTRYRSSLRSSEQANQTHVDALFNIQAKEQT
AEPNSGLRGIDENTFNRVRQIFADPQAVHTADTLAQILGSSKTTARRYLE
QGVKNNFLEAEISYGKVGRPERLYRGKV
>SC1046 copR, Copper resistance; transcriptional regulatory protein
MTIMSSCWRFTDSLTSLWHTALMKILLIEDNQKTIEWVRQGLTEAGYVVD
YACDGRDGLHLALQEHYSLIILDIMLPGLDGWQVLRALRTAHQSPAICLT
ARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLTIN
GLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG
INFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRLQAETSQNG
>SC1045 copS, Copper resistance; histidine kinase
MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMTLINRAA
QMQQLLLDGARPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQ
RFNEIPLAKNITRETLFRQAVQGTELTAVRVNARSGDDPLTLTIARLATE
RRQMLAQYRRNSLLISLIAILVCSALSPLVIRNGLRAITSLSRLTAATDS
GTLRQPLAEQALPVELRPLGQALNTMRQKLSDDFERLNQFADDLAHELRT
PVNILLGKNQVMLSQERSAEEYQQALVDNIEELEGLSRLTENILFLARAE
HQNIAVKKQPVSLNALVENMLDYLSPLAEEKRICFINQCQGTVWADEILL
QRVLSNLLTNAIRYSDENAVIRIESAYDDNVAEIRVANPGSHPADADKLF
RRFWRGDNARHTAGFGLGLSLVNAIALLHGGSASYRYADEHNIFSVRLPD
SGDS
>SC3949 cpxA, sensory kinase in two-component regulatory system with CpxR, senses misfolded proteins in bacterial envelope
MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQRQGLMIE
QHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTSEGRVIGAERS
EMQIIRNFIGQADNADHPQKKKYGRVEMVGPFSVRDGEDNYQLYLIRPAS
SSQSDFINLLFDRPLLLLIVTMLVSSPLLLWLAWSLAKPARKLKNAADEV
AQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTSQQRLLSDISHEL
RTPLTRLQLGTALLRRRGGESKELERIETEAQRLDSMINDLLVMSRNQQK
NALVSETMKANQLWGEVLDNAAFEAEQMGKSLTVNYPPGPWPLYGNPNAL
ESALENIVRNALRYSHTKIEVGFSVDKDGITITVDDDGPGVSPEDREQIF
RPFYRTDEARDRESGGTGLGLAIVESAMQQHRGWVKADDSPLGGLRLTLW
LPLYKRT
>SC3951 cpxP, periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stresses
MRKVTAAVMASTLAFSFLSHAAEVVTSDNWHPGDGATQRSAQNHMFDGIS
LTEHQRQQMRDLMQQARHEQPPVNVSEMETMHRLVTAEKFDESAVRAQAE
KMAQEQVARQVEMARVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVAQWQ
KSSSLKLLSSSNSRSQ
>SC3950 cpxR, response reguator in two-component regulatory system with CpxA, regulates expression of protein folding and degrading factors (OmpR family)
MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLL
DVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPK
PFNDRELVARIRAILRRSHWSEQQQSSDNGSPTLEVDALSLNPGRQEASF
DGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMH
ISNLRRKLPERKDGHPWFKTLRGRGYLMVSAS
>SC4433 creB, response regulator in two-component regulatory system with CreC (OmpR family)
MQQPQVWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDA
VILDVGLPDISGFELCRQLLERHPALPILFLTARSDEVDRLLGLEIGADD
YVAKPFSPREVSARVRTLLRRVKKFAAPSPVVRTGHFELNEPAAQIAWFG
TPLSLTRYEFLLLKTLLLSPERVYSRQQLMDIVWSDAQETFERTVDTHIK
TLRAKLRAINPDLSPINTHRGMGYSLRSV
>SC4434 creC, sensory kinase (alternative) in two-component regulatory system with CreB (or alternatively PhoB), senses catabolite repression,
MRIGMRLLLGYFLIVAVAAVFVLSIFVQEIKPGVRRATEGTLIDTATLLA
ALARDDLLSGNPTDGQLAKAFAQLQHRPFRANISGIVKVRNEYHVYMTDA
QGKVLFDSENKAVEQDYSRWNDVWLTLRGQYGARSTAKDAADPNSTLMYV
AAPIISDGRIIGVLSVGKPNAAMAPVIKRSERRILWASAVLLGIALAIGA
GMVWWINRSIARLTRYADSVTENRPLALPALGSSELRKLAQALESMRIKL
EGKNEIEQYVYALTHELKSPLAAIRGAAEILREGPPADVVTRFTENILAQ
NTRMQALVETLLRQARLENRQDIPLAPVAVDELFTQLSEARSIQLAAKKI
TLTLRPSSLVVVADAELLAQALGNVLDNAIDFTPENGVITLSAQPMGEKA
ILQVTDSGCGIPDFALPRIFDRFYSLPRENGRKSSGLGLAFVSEAARLLN
GEVTLCNRPEGGVLASLTLHRHFT
>SC3400 crp, catabolite activator protein (CAP), cyclic AMP receptor protein (CRP family)
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAV
LIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISY
KKFRQLIQVNPDILMRLSSQMARRLQVTSEKVGNLAFLDVTGRIAQTLLN
LAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAH
GKTIVVYGTR
>SC2759 csrA, Carbon storage regulator
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQR
IQAEKSQQSSY
>SC0631 cstA, carbon starvation protein
MNKSGKYLVWTALSVLGAFALGYIALNRGEQINALWIVVASVCVYLIAYR
FYGLYIAKKVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAG
PLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGEL
VKEEMGATAGVIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTI
PLAIFMGIYLRYLRPGRIGEVSVIGLVFLIFAIISGGWVAASPTWAPYFD
FTGVQLTWMLVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAVGILI
MRPTLTMPALTKFVDGTGPVWTGDLFPFLFITIACGAVSGFHALISSGTT
PKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAVL
APAGTADVVASAAQVVSSWGFAITPDTLHQIANEVGEQSIISRAGGAPTL
AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQD
LLGVVSPGLKRTDSLPANLLATALCVLGYFLHQGVVDPLGGINTLWPLFG
IANQMLAGMALMLCAVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAF
SPDAKIGFLAIANKFQAMIDSGNIPPQYTESQLAQLVFNNRLDAGLTIFF
MVVVVVLAVFSIKTALAALKIDKPTANETPYEPMPENVDEIVTQAKGAH
>SC0599 cusS, Sensor protein
MLRRAISNLLSNAMRYTPPGKTITLRIKEADDQIHIIVENPGMPIAPEHL
PRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVIAHQGKVSVTSDTRATRF
ILTLPKHLR
>SC4181 dcuR, response regulator in two-component regulatory system with DcuS, regulates anaerobic fumarate respiration
MINVLIVDDDAMVAELNRRYVAQISGFHCCGTASTLEKAKEFIFNSENHI
DLILLDIYMQQENGLDLLPVLHSAGCKSDVIVISSAADAATIKDSLHYGV
VDYLIKPFQATRFEEALTGWLRKKTAMEKRQYYEQSELDLLIHGNSSSEQ
EPRRLPKGLTQQTLRTLCQWIDAHQEQEFSTDELANEVNISRVSCRKYLI
WLVNCHILFTSIHYGVTGRPVYRYRVQPEHYSLLKQYCQ
>SC4182 dcuS, sensory histidine kinase in two-component retgulatory system with DcuR, senses fumarate/C4-dicarboxylate
MKHSLPCRALRKRPMKLGTTVILMVSAVLFSVLVVVHLIYFSQISSMTRD
ALADKALAVARSLADSPAIREGLKKPPAESGIQPLAEAVSQHNGFLFIVV
TNMQGIRYSHPETQRIGQPFKGDDILLALQGKENVAINRGFLAKALRVFT
PVYDERHRQIGVVAIGLELSHVTQQINNSRGSIIWSILFGALVGLLGTYA
LVKVLKRILFGLEPYEISTLFKQRQAMLQSIKEGVIAVDDSGEVTLINHA
AQALLDYRKTQDDARLSTLSHAWSQVVDISEVLRDGTPRRDEEIIVKGRL
LLVNTVPVRSNGEIIGAISTFRDKTEVRQLMQRLDGMVNYADALRERSHE
FMNKLHVILGLLHLKSYKQLEAYIIKTANNYQEEIGLLLGKIKSPIIAGF
LLSKITRASDFGHSLVISSDSQLPDNNNEDQVTVLITALGNLIENALEAL
SQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAER
GVGLALVKQQVEALGGVISVESEPGIFTQFFVQLPWDGKRTSL
>SC0186 dksA, dnaK suppressor protein
MLRRSNMQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLSHFKRIL
EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERK
LIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEI
REKQMAG
>SC0656 dpiA, response regulator in two-component regulatory system with DpiB, transcriptional regulation of cit operon (citrate fermentation) genes and of plasmid
MIDRFKPGLILLDNYLPDGKGITLLHELMQSRYPGGVVFTTAASDMETVA
EAVRSGAFDYLVKPIAYERLGQTLTRYQQRRRMLASSDSASQKQIDEMFN
AYARGEPQGDLPTGIDALTLNAVMKLFADPTVRHTAETVAQALTISRTTS
RRYLEYCASRHLIVAEIIHGKVGRPQRIYHGG
>SC0655 dpiB, sensory histidine kinase in two-component regulatory system with DpiA, regulation of cit operon and plasmid inheritance genes
MSYQKNKKLFPFFRQLAFPLRIFLLILVVSVFIVAALAQYLSASFEDYLA
SHVRDMAMNQAKIIASNDSIIAAVKNRDYKRLAIIANKLQRGTDFDYVVI
GDRHSIRLYHPNPEKIGYPMQFTKPGALERGESYFITGKGSIGMAMRAKT
PIFDNKGNVIGVVSIGYLVSKIDSWRLDFLLPMAGVFVLLLVVLMLLSWF
FAAHIRRQMLGMEPKQIARVVRQQEALFSSVYEGLIAVDPEGHITAINRN
ARKMLGLPSPGRQWLGKLIAEVVNPADFFTCQIAERRQDVMANFNGLSVI
ANREAIRSGEELLGAIISFRSKDEIATLNAQLTQIKQYVESLRTLRHEHL
NWMSTLNGLLQMKEYDRVREMVQGESQAQQQLIDSLRGAFADRQVAGLLF
GKVQRARELGLKMVIVPGSQLHQLPEGLDSTEFAAIVGNLLDNAFEASLR
TQEGDKTIELFLSDEGDEVVIEVADQGCGVPEALREKIFEQGVSTRTDEP
GEHGIGLYLIASYVGRCGGVITLEDNDPCGTLFSLFLPKVKKNDDRTINP
IDR
>SC4216 ecnR, putative bacterial regulatory protein, luxR family
MMERLLGKKVLYYFRVQKTMLKILVIDRCHFTRTGMEAWLNHTDVLSSSL
LVSGMNNLILAKEHILQWKPHLVIADLYGFLNDALPEQPINAFFAACRMT
PLVLLQSGNMPYRPQYASHAVLSKHTPLHELAQRIKGALYTHPLQEAPES
ATPLLSPQEEKVLAMWTEGTSNKEIAYALGIHGKTVYTYKRNIRMKLHMD
NRYSPFLMLPEKID
>SC3433 envZ, sensory histidine kinase in two-component regulatory system with OmpR
MRRMRFSPRSSFARTLLLIVTLLFVSLVTTYLVVLNFAILPSLQQFNKVL
AYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYTNEAAEEAGLR
WAQHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLT
EIHQGDFSPLFRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGI
IPPPLREYGASEVRSVTRAFNHMAAGVKQLADDRTLLMAGVSHDLRTPLT
RIRLATEMMGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQEMPMEMAD
LNSVLGEVIAAESGYEREINTALQAGSIQVKMHPLSIKRAVANMVVNAAR
YGNGWIKVSSGTESHRAWFQVEDDGPGIKLEQRKHLFQPFVRGDSARSTS
GTGLGLAIVQRIIDNHNGMLEIGTSERGGLSIRAWLPVPVARVQGTTKEA
>SC2792 fhlA, formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons (EBP family)
MCDQRVCGQPSGNNLRLIPIIHLPFSHRFAVFSWKSNMSYTPMSDLGQQG
LFDITRTLLQQTDLASLSEALSQLVKRSALADSAGIVLWQAQSQRAQYYA
TRENGRPVEYEDETVLAHGPVRRILSRPDALHCNFHEFTETWPQLAASGL
YPEFGHYCLLPLAAEGRIFGGCEFIRQEDRPWSEKEYDRLHTFTQIVGVV
AEQIQNRVNNNVDYDLLCRERDNFRILVAITNAVLSRLDIDELVSEVAKE
IHHYFNIDAISIVLRSHRKNKLNIYSTHYLDEHHPAHEQSEVDEAGTLTE
RVFKSKEMLLINLNERDPLAPYERMLFDAWGNQIQTLCLLPLMSGKTMLG
VLKLAQCEEKVFTTANLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDE
NLALTEQLNNVDSEFGEIIGRSEAMYNVLKQVEMVAQSDSTVLILGETGT
GKELIARAIHNLSGRSGRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA
QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKLIQT
DVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLRERPEDIPLLV
KAFTFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRELENVVERAVLLTR
GNVLQLSLPDITAVTPDTSPVATESAKEGEDEYQLIIRVLKETNGVVAGP
KGAAQRLGLKRTTLLSRMKRLGIDKDALA
>SC0588 fimZ, fimbrial protein Z, putative transcriptional regulator (LuxR/UhpA family)
MWCVDLAISQSLRCLTLILKRRTHNSLRHTTMKPASVIIMDEHPIVRMSI
EVLLGKNSNIQVILKTDDSRTAIKYLRTYPVDLVILDIELPGTDGFTLLK
RIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKM
ILSGYSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRYLANGMSNKE
IAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL
>SC1958 fliY, putative periplasmic binding transport protein
MAVALVAGMSAKSFADEGLLNKVKERGTLLVGLEGTYPPFSFQGEDGKLT
GFEVDFAEALAKHLGVKASLKPTKWDGMLASLDSKRIDVVINQVTISDVR
KKKYDFSTPYTVSGVQALVKKGNEGTIKTAADLQGKKVGVGLGTNYEEWL
RQHVQGVDIRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTKGTLAV
TGDAFSRQESGVALRKGNEDLLKAVDNAIAEMQKDGTLKALSEKWFGADV
TQ
>SC1656 fnr, transcriptional regulation of aerobic, anaerobic respiration, osmotic balance (CRP family)
MNYSFSGIAQTYALTKKMLKLTNINYGLSRPMIPEKRIIRRIQSGGCAIH
CQDCSISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLY
AIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGHHPSFAQALETS
MVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILLLSKKNAEER
LAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQ
KSGMLAVKGKYITIENSDALAALAGHTRNVA
>SC3148 glnE, adenylyl transferase for glutamine synthetase, regulates P-II (GlnB) and GlnK
MTPLSSPLSQYWQTVVERLPEGFTETSLSVQAKSVLTFSDFALDSVIAHP
EWLAELESASPQADEWRHYAGWLQEALAGVCDDASLMRELRFFRRRIMVR
IAWAQTLSLVDDETILQQLSHLAETLIVGARDWLYAACCREWGTPCNPQG
VPQPLLILGMGKLGGGELNFSSDIDLIFAWPEHGETRGGRRELDNAQFFT
RLGQRLIKALDQPTMDGFVYRVDMRLRPFGDSGPLVLSFAALEDYYQEQG
RDWERYAMVKARLMGDNDDAWSRELRAMLRPFVFRRYIDFSVIQSLRNMK
GMIAREVRRRGLKDNIKLGAGGIREIEFIVQVFQLIRGGREPSLQSRSLL
PTLDAIAALHLLPENDVAQLRVAYLFLRRLENLLQSINDEQTQTLPADDL
NRARLAWGMKAENWPQLVGELTDHMANVRRVFNELIGDDEADTPQEEERS
EPWREVWQDALQEDDSTPVLAHLADEDRRQVLTLIADFRKELDKRPIGPR
GRQVLDQLMPHLLADVCSREDAAVTLSRITPLLAGIVTRTTYLELLSEFP
GALKHLIMLCAASPMIASQLARYPLLLDELLDPGTLYQPTATDAYRDELR
QYLLRVPEEDEEQQLEALRQFKQAQLLRIAAADIAGTLPVMKVSDHLTWL
AEAMIDAVVQQAWTQMVARYGQPAHLDERQGRGFAVVGYGKLGGWELGYS
SDLDLIFLHDCPMDVMTNGEREIDGRQFYLRLAQRIMHLFSTRTSSGILY
EVDARLRPSGAAGMLVTSADAFADYQQHEAWTWEHQALVRARVVYGDPQL
TSQFDAVRRTIMTTARDGKTLQTEVREMREKMRAHLGNKHRDRFDIKADE
GGITDIEFIAQYLVLRYAHEKPKLTRWSDNVRILELLAQNGIMDEHEAQA
LTVAYTTLRDELHHLALQELPGHVAQTCFSKERALVQASWRKWLVAV
>SC0825 glnH, ABC superfamily (bind_prot), glutamine high-affinity transporter
MKSLLKVSLAALTLAFAVYSHAADKKLVVATDTAFVPFEFKQGDKYVGFD
VDLWDAIAKELKLDYTLKPMDFSGIIPALQTKNIDLALAGITITDERKKA
IDFSDGYYKSGLLVMVKANNNDIKSVKDLDGKVVAVKSGTGSVDYAKANI
KTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGE
SLEAQQYGVAFPKGSDELREKVNGALKTLRENGTYNEIYKKWFGTEPK
>SC0693 gltI, ABC superfamily (bind_prot), glutamate/aspartate transporter
MIKELDMQLRKLTTAMLVMGLSAGLAHAEDGAPAAGSTLDKIAKNGVIVV
GHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPIT
SQNRIPLLQNGTFDFECGSTTNNLERQKQAAFSDTIFVVGTRLLTKKGGD
IKDFPDLRGKAVVVTSGTTSEILLHKLNEEQKMGMRIISAKDHGDSFRTL
ESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRKNDPE
FKKLMDDTIAQAQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFK
APNDKALN
>SC2355 hisJ, ABC superfamily (bind_prot), histidine transport protein
MKKLALSLSLVLAFSSSTSAFAAIPQKIRIGTDPTYAPFESKNAQGELVG
FDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQ
QEIAFTDKLYAADSRLVVAKNSDIQPTVASLKGKRVGVLQGTTQETFGNE
HWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDY
KFGGPAVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAK
KYFDFDVYGG
>SC1748 hnr, putative regulatory protein
MTQPLVGKQILIVEDEPVFRSLLDSWFSSLGATTALAGDGVDALELMGRF
TPDLMICDIAMPRMNGLKLVENLRNRGDQTPILVISATENMADIAKALRL
GVEDVLLKPVKDLNRLRETVFACLYPNMFNSRVEEEERLFRDWDAMVSNP
TAAAQLLQELQPPVQQVISHCRINYRQLVSADQLGLVLDIAPLSDNELAF
YCLDVTRAGDNGVLAALLLRALFNGLLQDQLGQQKHRLPELGALLKQVNH
LLRQANLPGQFPLFVGYYHSELKNLILVSAGLNATLNTGAHQVQISSGVP
LGTLGNAYLNQLSQRCDSWQCQIWGAGGRLRLMLSAE
>SC4055 hydG, response regulator in two-component reguatory system with HydH, regulates hydrogenase 3 activity (EBP family)
MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVF
DLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGA
LDYLIKPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQH
LLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDKPLVTLNCAA
LNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQ
VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY
RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLI
HYDWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIKTECSGEIQ
PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKISR
>SC4054 hydH, sensory kinase in two component regulatory system with HydG
MFRFILRSPVAHLILSLASSVPGNYSLSGSELTRFRRQKASKNDSHDPPG
ESFLPTSIRKGVRHRAVMRSKEWHDLCLSKENKNEPGKPVSFIRLHKDAA
ATWLSRLLPAAIFILVGLFSIMVIRDYGRESAAARQTLLEKGNVLIRALE
SGTRVGMGMRMHHAQQQTLLEEMAGQPGVLWFAVTDAQGVIITHSNPGMV
GKSLYSPSEMHQLNPGPQERWRRVDVAANGETVPALEIYRQFQPLFGMRG
HGMRGLGMARSANDNEPAKQTIFIAFDASELAATQAREWRNTLIVLSALA
AVLLATLLAFFWHQRYQRSHRELLDAMKRKEKLVAMGHLAAGVAHEIRNP
LSSIKGLAKYFAERTPAGGESHELAQVMTKEADRLNRVVSELLELVKPAH
LTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRLTQ
VLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAI
FTPYFTTKADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLPVIA
RQQD
>SC0723 kdpD, sensory kinase in two-component regulatory system wtih KdpE, regulates kdp operon (high-affinity potassium transport system)
MNDEPLRPDPDRLLEQTPPPHRGKLKIFFGACAGVGKTWAMLAQAQRLRA
QGLDVVIGVVETHGREETAALLDGLTILPPKRHSHRGRQIREFDLDAALA
RRPALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESL
NDVVSGVTGIQVRETVPDPFFDAADEVVLVDLPPDDLRQRLNEGKVYIAG
QAERAIEHFFRKGNLIALRELALRRTADRVDDQMRAWRAHPGEEKVWHTR
DAILLCIGHNTGSEKLVRTAARLASRLGSVWHAVYVETPTLHRLPEKQRR
AILSALRLAQELGAETATLSDPAEEKAVVRYAREHNLGKIVMGRPASRRW
WRRDAFADRLARRAPDLDQVIVALEEPPARALAQTPDNRPFKEKWRGQIQ
GCLVAVALCAITTLIAMQWLVTFDAANLVMLYLLGVVVIALLYGRWPSVV
ATVINVASFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRY
QARVARYREQRTRHLYEMSKALAVGRSEHDIAATSERFIASTFQARSQIL
LPDTNGKLLPLTHQQGMTPWDDAIARWSFDKGQPAGAGTDTLPGVPYQIL
PLKSADKTYGLAIVEPGNLRQLMVPEQQRLLETFTLLVANALERLTLTAS
EEQARLASERESIRNALLAALSHDLRTPLTVLFGQAEILTLDLASAGSPH
ARQASEIRQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQ
MLEPGLLHPITLSLPQQLTLIHVDGPLFERVLINLLENAVKYAGPQASIG
IDAAVKDDRLQLDVWDNGPGIPAGQEQKIFDKFARGNKESAVPGVGLGLA
ICHAIVEVHGGTLTAYNRPQGGACFRVTLPQGKPPELDYFHEDM
>SC0722 kdpE, response regulator in two-component regulatory system with KdpD, regulates kdp operon encoding a high-affinity K translocating ATPase (OmpR family)
MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGLLEAATRKPDLII
LDLGLPDGDGIDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLS
KPFGIGELQARLRVALRRHAASPCADPIVRFSGVTVDLAARLIHRGDEEI
HLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLR
QKLEQDPTRPRHFITETGIGYRFMP
>SC3693 levR, putative NtrC family transcriptional regulators, ATPase domain
MRRIEIVLGELERLTRGLCLADLAQETAFTAEAIGFNLGLARNSVSKDLN
QLWNDGLAIKSRGRPVYFLHRQALETLLGRQLEEPGREVRSVADVLPHEE
HYAPDDPFTSLIGYDRSLRDAVEKGRAAVLYPHGLHVLLTGPSGVGKTFF
VELMHRFACEQASGAIPPLVYFNCAEYAHNPELLSSHLFGHRQGAFTGAN
EHKTGLVEQADGGYLLLDEVHRLSYEGQEKLFSILDKGEYRPLGVSSQPR
SISVRLICATTEPVGSALLRTFQRRIQVCIDLPGIRQRSVEEQIELIVGF
LQRESRKIERTVSIDKPLLLWLLNKPLEGNIGQLKSDIQFLCAQAWASGM
TEHNDTLQLDKRLAEMSVNPTPEQRLLVDTLFDGKARLNIDARTLPALKT
SLATGAEIEESDLFYSFLTREYVNLRNSNVPPAETLAILKNKLSSIFEYG
LYSRDSVAHPPRYGDQIEERVTLLIGCVEQVLGFSLPENLVNPLRKHFLA
LIGYVQRGLIPQLYSSSLILDRCKDEYDNATLLCRKINELLHIQCPATEV
VWLCLFLKECRHYRQRIDASPGCGVILIAHGATTATSQAQYVNRVLEREL
FSAIDMPFEQSVHDTLETLTQMIQTRQYRRLILLVDIGSLIHFGSTISKL
FQIDVLLMPNITLTSLLEVGLDLSYETSDLPQLTALLQSKNIPCQLCTPQ
QENGGKVLVISCITGMGTAEKIKKVLEESFGELMSQDTRMVILDYNEVRS
LERVQQALNASERLAGIVGTFQPGLPDIPFISLEELFSEQGPELVLSLLT
PDLSNAERRLEMERSAMRFISALTMESIINHISVLNPQRILKEMEGVFNH
LTSSLSLKPSRQVTLRFLIHCCCMVERIVINRKPLQMALESQPNLDARAF
SVIKSAFLPIEDAYAIRLSDAEYFYIYELLYS
>SC4116 lexA, SOS response regulator, transcriptional repressor (LexA family)
MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL
ARKGVLEIVSGASRGIRLLQEEEDGLPLVGRVAAGEPLLAQQHIEGHYQV
DPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID
DEVTVKRLKKQGNKVELLPENSEFTPIVVDLREQSFTIEGLAVGVIRNGE
WL
>SC2752 luxS, quorum sensing protein, produces autoinducer-acyl-homoserine lactone-signaling molecules
MPLLDSFAVDHTRMQAPAVRVAKTMNTPHGDAITVFDLRFCIPNKEVMPE
KGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRV
ADAWKAAMADVLKVQDQNQIPELNVYQCGTYQMHSLSEAQDIARHILERD
VRVNSNKELALPKEKLQELHI
>SC3079 mac, putative methyl-accepting chemotaxis protein
MFKKVLGLRHWNNNVVKIPPPAESGANASDVVVDTPEPYERILCQKILMG
LSTIDIIRNAIIKSCEQLNIEKERINELNEQNDKARSSLKSLVEFITEIG
TTSSDIGCRMGDLNTSLTQINACIKEIQKIANQTNLIAINSAIEAARVGD
AGRGFSVISKEVKNLSEDVKHSSKSVSTLTSVIKDNTARVSEVLDNQQPV
IDNITTNINQIVESIGIVIDKSLSMKSVMQYISTVQFLNIVKVDHVIWKM
EVYKLLLNKDINSKITMHDQCRLGKWYYGFEGQQFSNYYSFRSLEAPHKE
VHTAGHSALNYFAAGDMNAMSQELDRMERSSNEVVNQLEMLAVDLLKETT
L
>SC1652 mcp, putative methyl-accepting chemotaxis protein
MLRNISVRTCIILFMVCTFLLVDTLQIAFLHDLPILITCNIIYLISSLLL
WWYMTCYLVVPINTVKKSIEEVAAGNLSIHISEFGNNCAGRLIPGINSLS
ENISALVREIRSSSQTAMTLSEQLAARSLSLSVKTEQQSASLIQTAASMD
EMAASTKNNADNTRMASIQADCATQCARKGGELMVRVTENMRSITDCASQ
MTEIISLIDGIAFQTNILALNAAVEAARAGDHGKGFSVVAGEVRNLAHRS
AEAAKNIKALIDVTHDNVRQGAAIVQEAEKNMQEIVGGSGQLNVLMSEIS
TTTREQEKGINQITLALSDLESTTHSNVLMVEALSASSDVLKAQVIELQT
KTDKFRLS
>SC3094 mcp1, putative methyl-accepting chemotaxis protein
MRLLQNFTIRMVMLTILGLFCLLWSGVGLYSVHALSEVSEGNDIDRHLVR
QMTVLSQGNDQYFRFVTRLSRAMDVKIGGGTPDFAPARQSLENMRQKLEE
MKALSPGPMNPDISREVLSNWQALLEKGVVPQMQLAQQGSLTAWSEHAST
VTPALSRAFGASAERFSHEAGAMLDNTRVMVDGKTYTIRILLITAVILGI
AILIFTDRYLVAMMVKPLERIRQQFQRIAQGDLSQPIEALGRNCVGRLVP
LLRAMQDSLREAVSTIRAGSDNIWRGATEISTGNNDLSSRTEEQAAALEE
TAASMEQLTATVKMNAEHARQASQLADAASLTAGKGGELVSNVVETMNGI
SASSQQIAEITTVINSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVR
NLASRSAGASKEIEALIGESVRRVAQGAQLVQETGATMDAILLGVTEVTT
IMKQIASASEEQSKGISQVGVAITQMDSVTQQNAALVEQVSAAAAALERQ
TEDLQRSVQQFRLSASEPQQRVTAKAAPGVQRMASTPAQSTDEWVAF
>SC3162 mcp2, putative methyl-accepting chemotaxis protein
MFLHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYP
TTVKANLLIDNFNDFIIAQQLMLLDEEGRWSQSSQKDLDEISQRITALLD
ELSSNRHDAASQKIITEIREARQQYLESRFRILKDIQSNNRQAAIQEMMT
RTVQVQKVYKDKVQELIAVQDAQMHNAGVQVEGDFKTNRTLLITLALISI
AAGCVMGWYIVRSITRPLDEAVRFAEAIADGDLTRHITTDYKDETGVLLQ
ALMAMKTRLLDIVQEVQNGSESISTAAAQIVAGNQDLAARTEEQASSVEE
TAASMEQITATVKNTADHTSEATKLSAGAASVVKNNGEMMNQVTQKMRVI
NDTANRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRGFAVVAGEVR
QLAQKSASSASEIRNLIEDSTSQTQEGMHLVEKASALINGMVDNVEEMDV
ILREIGQASREQTDGISQINSAIGLIDAATQQNSCLVEESVAAAASLNEQ
ALHLKELVNVFRVREEDTQPA
>SC1761 narL, response regulator in two-component regulatory system with NarX (or NarQ), regulates anaerobic respiration and fermentation (LuxR/UhpA familiy)
MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASNGEQGIDLAES
LDPDLILLDLNMPGMNGLETLDKLREKALSGRIVVFSVSNHEEDVVTALK
RGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTD
RDVTQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKL
KSRVEAAVWVHQERIF
>SC2251 narP, response regulator in two-component regulatory system with NarQ (or NarX)
MPEVTPFQVLIVDDHPLMRRGIRQLLELDPAFHVVAEAGDGASAIDLANR
IEPDLILLDLNMKGLSGLDTLNALRRDGVTAQIIILTVSDSASDIYALID
AGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDP
FSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRS
RVAATILFLQTRGMQ
>SC1760 narX, sensory histidine kinase in two component regulatory system with NarL, senses nitrate/nitrite, regulates anaerobic respiration and fermentation
MFKRCFSPLTLVNQLALIVMLSTAIGVAGMAVSGWLVQGVQGSAHAINKA
GSLRMQSYRLLAAVPLDAKDQKLLDEMEQTAFSPELTRAAERDGQQKQLK
ALQDYWHNELSPGLQHAQNAHAVAEDVTRFVAGLDRLVTSFDHTTELRIE
RVVLVHRVMAIFMALLLVFTIIWLRVRLLQPWKQLLSMARAVSQRDFTQR
ANISGRNEMAALGSALNNMSEELAESYAVLEQRVQEKTAGLEHKNQILSF
LWQANRRLHSQAPLCERLSPVLNGLQNLTQLHDIELRVYDLEDEDNHQEF
TCQSDISCDDKGCHLCPRSALPMINGGTTLKWRLTDSHTQYGILLATLPY
GRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHD
SIAQSLSCMKMQVSCLQMQGDVLPESSRELLSQIRNELNCSWAQLRELLT
TFRLQLTEPGLRPALEASCQEFSARFGFTVKLDYQLPPRLVPSHQAIHLL
QIAREALSNALKHSHADDVVVTVTQCGKQVKLKVQDNGCGVPENAERSNH
YGMIIMRDRAQSLRGDCQVRRRETGGTEVTVTFIPETNFTETQGDTHE
>SC3898 ntrB, sensory kinase (phosphatase) in two-component regulatory system with GlnG (nitrogen regulator II, NRII)
MASGIQPDAGQILNSLINSVLVVDDALAIHYANPAAQQLLAQSSRKLFGT
PLPELLSYFSLNIDLMRESLAAGQGFTDNEVTLVIDSRSHILSLTAQRLP
DDFILLEMAPMDNQRRLSQEQLQHAQQIAARDLVRGLAHEIKNPLGGLRG
AAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQHPGMHITESIH
KVAERVVALVSMELPDNVRLIRDYDPSLPELPHDPEQIEQVLLNIVRNAL
QALGPEGGEITLRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTL
FYPMVSGREGGTGLGLSIARNLIDQHAGKIEFTSWPGHTEFSVYLPIRK
>SC3897 ntrC, response regulator in two-component regulatory system with GlnL (EBP family)
MAGAYRVFGLPADSEIEVFMQRGIVWVVDDDSSIRWVLERALAGAGLTCT
TFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM
TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNI
EVNGPTTDMIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL
HRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA
DGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATH
QNLERRVQEGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLQVAAR
ELGVEAKLLHPETETALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDL
PGELFEASAPDSPSHLPPDSWATLLAQWADRALRSGHQNLLSEAQPELER
TLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME
>SC3434 ompR, Transcriptional regulatory protein ompR
MGVQTMQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLT
RESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGL
EIGADDYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKL
NLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYS
AMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA
>SC2397 pgtA, Phosphoglycerate transport: activator
MSDVCMPGCSGIDLMTLFHQDDDQLPILLITGHGDVPMAVDAVKKGAWDF
LQKPVDPGKLLILIEDALRQRRSVIARRQYCQQTLQVELIGRSEWMNQFR
QRLQQLAETDIAVWFYGEHGTGRMTGARYLHQLGRNAKGPFVRYELTPEN
AGQLETFIDQAQGGTLVLSHPEYLTREQQHHLARLQSLEHRPFRLVGVGS
ASLVEQAAANQIAAELYYCFAMTQIACQSLSQRPDDIEPLFRHYLRKACL
RLNHPVPEIAGELLKGIMRRAWPSNVRELANAAELFAVGVLPLAETVNPQ
LLLQEPTPLDRRVEEYERQIITEALNIHQGRINEVAEYLQIPRKKLYLRM
KKYGLSKEHYKF
>SC2398 pgtB, Phosphoglycerate transport: protein for signal transmission
MKGRLLQRLRQLSISNSLRGAFLTGALLTLIVSMVSLYSWHEQSSQVRYS
LDEYFPRIHSAFLIEGNLNLAVDQLNEFLLAPNTTVRLQLRTQIIQHLDK
IERLSQGLQLAERRQLAVILQDSRTLLAELDNALYNMFLVREKVSELSAR
IDWLHDDFTTELNSLVQDFTWQQGTLLDQIEANQGDAAQYLQRSREVQNE
QQQVYTLARIENQIVDDLRDRLNELKSGNNDGMLVETHIRYLENLKKTAD
ENIRALDDWPSTITLRQTIDELLEIGMVKNKMPDTMRDYVAAQKALLDAS
RAREATLGRFRTLLEAQLGSSHQQMQTFNQRLEQIVRVSGGLILVATLLA
LLLAWGLNHYFIRSRLVKRFTALNQAVVQIGLGRTDSTIPVYGRDELGRI
ARLLRHTLGQLNMQRRQLEQEVAERKEIEADLRAMQDELIQTAKLAVVGQ
TMTTLAHEINQPLNALSMYLFTAGRAIEQGQSGQARNTLTKAEGLINRID
AIIRSLRQFTRRAELETPLYPVDLRQTFVAAWELLAMRHQSRQGALSLPT
DTVWVSGDEVRIQQVLVNVLANALDACSHDAAIAVTWQTQGEALEVYIAD
NGPGWPVALLPSLLKPFTTSKAVGLGIGLSISVSLMAQMKGDLRLASTLT
RNACVVLQFSVTDVDDVE
>SC0438 phoB, response regulator in two-component regulatory system with PhoR (or CreC), regulates pho regulon (OmpR family)
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLI
LLDWMLPGGSGLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGAD
DYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGD
SPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIR
RLRKALEHSGHDRMVQTVRGTGYRFSTRF
>SC1077 phoH, PhoB-dependent, ATP-binding pho regulon component
MCAHNRVQENAGDVYLQLKVLSMGRQKAVIKARREAKRVLRRDSRSHKQR
EEESVTSLVQMGGVEAIGMARDSRDTSPVKALNEAQAHYLNAIDSKQLIF
ATGEAGCGKTWISAAKAAEALIHKDVERIIVTRPVLQADEDLGFLPGDIA
EKFAPYFRPVYDVLLKRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENA
VVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRGVRSGLSDA
LERFEEDEMVGIVHFNKDDCVRSALCQRTLHAYS
>SC0697 phoL, putative phosphate starvation-inducible protein, ATP-binding
MFSVRRYRHKRNSLNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLG
IEINRRDNHFKLTGRPICVTAATDILRSLYVDTAPMRGQTQDIEPEQIHL
AIKEARVLEQSAESVPDYGKAINIKTKRGVIKPRTPNQAQYIANILDHDI
TFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGD
LSQKVDPYLRPLYDALFEMLGFEKVEKLIERNVIEVAPLAYMRGRTLNDA
FIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDLPRNTKSGLRHA
IEVLAEVDEISFNFFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAALAAE
RKREAQEQEQK
>SC1182 phoP, response regulator in two-component regulatory system with PhoQ, transcribes genes expressed under low Mg+ concentration (OmpR family)
MMRVLVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAI
VDLGLPDEDGLSLIRRWRSSDISLPVLVLTAREGWQDKVEVLSSGADDYV
TKPFHIEEVMARMQALMRRNSGLASQVINIPPFQVDLSRRELSVNEEVIK
LTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRK
KIQAQYPHDVITTVRGQGYLFELR
>SC1181 phoQ, sensory kinase protein in two-component regulatory system with PhoP, ligand is Mg+
MNKFARHFLPLSLRVRFLLATAGVVLVLSLAYGIVALVGYSVSFDKTTFR
LLRGESNLFYTLAKWENNKISVELPENLDMQSPTMTLIYDETGKLLWTQR
NIPWLIKSIQPEWLKTNGFHEIETNVDATSTLLSEDHSAQEKLKEVREDD
DDAEMTHSVAVNIYPATARMPQLTIVVVDTIPIELKRSYMVWSWFVYVLA
ANLLLVIPLLWIAAWWSLRPIEALAREVRELEDHHREMLNPETTRELTSL
VRNLNQLLKSERERYNKYRTTLTDLTHSLKTPLAVLQSTLRSLRNEKMSV
SKAEPVMLEQISRISQQIGYYLHRASMRGSGVLLSRELHPVAPLLDNLIS
ALNKVYQRKGVNISMDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVE
ISARQTDDHLHIFVEDDGPGIPHSKRSLVFDRGQRADTLRPGQGVGLAVA
REITEQYAGQIIASDSLLGGARMEVVFGRQHPTQKEE
>SC0439 phoR, sensory kinase in two-component regulatory system with PhoB, regulates pho regulon
MLERLSWKRLVLELVLCCIPALILSAFFGYLPWFLLAAVTGLLVWHFWNL
LRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRF
RSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLRYP
EFTQYLKTRDFTRPLHLVLNTGRHLEIRVMPYTDKQLLMVARDVTQMHQL
EGARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATREKALHTMREQT
YRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQKHT
FTFEVDDSLSVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRVAHGA
EFCIQDNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNH
HESRLEIDSSPGKGTRFSFVLPERLIAKNSD
>SC2836 pphB, serine/threonine specific protein phosphatase 2
MELIRYADINSDLYRHIWVVGDIHGCYSLLLTRLAQLNFSPDTDLLISTG
DNIDRGKENLETLRLLNTPWFISVVGNHEAMALDAFETQDGNFWYVNGGY
WYDSVTEKDRQEATELLLTFKQRPHIIEVETSSKKYVIAHADYPDDSYDY
GKQVDIDSVLWSRDRLLGSLQGNIHPIRGADTFIFGHMIVDYTTTFANQI
YIDTGSFCSGNLSFFKIK
>SC1842 proQ, activator of proP
MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVERVGGEM
NLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELEEQHVEHAR
KQLEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPVARRKEG
AERKPRADKPTTKAPRAPREEKHTPVSDISVLTVGQSLKVKAGNNAMDAT
VLEITKDGVRVQLNSGMSLIVRAEHLVF
>SC1849 prpA, serine/threonine protein phosphatase
MNDRKNMMRPEEIYQRIEAKNWRHVWVVGDIHGCFSMLMKRLRECRFDPQ
QDLLVSVGDLIDRGPDSLGCQALLRESWMTAVRGNHEQMALDARASSQST
LWLMNGGDWFTRLTAEHAAQAEALFILCQRLPWILEVRCRHSTHVIAHAD
YPASTYQWQKKVDLHQVLWSRERLINKRGGISGADHFWFGHTPLRRRMDF
ANVHYIDTGSVFGGQLTLARIQ
>SC0408 prpR, regulator for prp operon (EBP family)
MTTAHSAPRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATITPIQLGFE
KAVTYIRKKLATERCDAIIAAGSNGAYLKSRLSIPVILIKPSGFDVLQAL
AKAGKLTSSIGIVTYQESIPALLAFQKTFHLRLEQRSYVTEEDARGQINE
LKANGIEAVVGAGLITDLAEEAGMTAIFIYSAATVRQAFHDALDMTRLTR
RQRVDYSSGKGLQTRYELGDIRGQSPQMEQLRQTITLYARSRAAVLIQGE
TGTGKELAAQAIHQTFFHRQPHRQNKPSPPFVAVNCGAITESLLEAELFG
YEEGAFTGSRRGGRAGLFEIAHGGTLLLDEIGEMPLPLQTRLLRVLEEKA
VTRVGGHQPIPVDVRVISATHCDLDREIMQGRFRPDLFYRLSILRLTLPP
LRERQADILPLAESFLKQSLAAMEIPFTESIRHGLTQCQPLLLAWRWPGN
IRELRNMMERLALFLSVDPAPTLDRQFMRQLLPELMVNTAELTPSTVDAN
ALQDVLARFKGDKSAAARYLGISRTTLWRRLKAGAKDQSDN
>SC1683 pspA, phage shock protein; negative regulatory gene for the psp opreon
MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSNSARA
LAEKKQLSRRIEQATTQQTEWQEKAELALRKDKDDLARAALIEKQKLTDL
IATLEQEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAASSSR
DVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHRFGKQQSLDQQFANL
KADDEISEQLAQLKAKMKQDNQ
>SC1681 pspC, phage shock protein; regulatory gene, activates expression of psp operon with PspB
MGGINLNKKLWRMPQKGMVRGVCAGIADYLDVPVKLVRILVVLSIFFGLA
FFTVVAYIVLSFVLDPMPDNLAAGKPQPTSGELLDTVDRELAAGEKRLRE
MERYVTSDTFTLRSRFRQL
>SC1684 pspF, transcription activator
MAIFIMTEFKDNLLGEANRFLEVLEQVSRLAPLDKPVLIIGERGTGKELI
ANRLHYLSSRWQGPLISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGR
FERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLV
CATNADLPAMVKEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAI
QMCRELRLPLFPGFTDRAKETLLHYAWPGNVRELKNVVERSVYRHGSSEH
PLDEIVIDPFQRHPAEPPAPALPAASATPDLPLKLREFQLQQEKALLQRS
LQQAKFNQKRAADLLALTYHQFRALLKKHQL
>SC3199 ptkA, Sugar specific-family of transport protein, galactitol-specific enzyme IIA of phosphotransferase system
MSQLFVRTGITFDSSQQALAHIGKEMLAKGVVHDSYPQALVEREASFPTG
IALERHAVAIPHCEAVHAKSPAIYLIRPDKPVMFQQADDDEEIAVSLIIA
LIVENPAAQLKLLRRLFSELQNPSTLDALLSAPDAELAIRFQETILEPEQ
CVQV
>SC3260 ptsN, sugar specific PTS family, enzyme IIA, also regulates N metabolism
MINNDTTLQLSSVLNQECTRSGVHCQSKKRALEIISELAAKQLSLPPQVV
FEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAID
NQPVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAALNDEELY
QIITDTEGEQNEA
>SC2942 ptsP, General PTS system, enzyme I, transcriptional regulator with NPR and NTR proteins
MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLADHDRRCY
YLMATRGLKKPRGRTVALAFDEGIVGLVGRLAEPINLADAQKHPSFKYIP
SVKEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQM
AAILSQSQVTALFGQYRQTRIRALPAAPGVAIATGWQDATMPLMEQVYEA
STLDTSLERERLTGALEEAANEFRRYSKRFAAGAQKETAAIFDLYSHLLS
DARLRRELFAEVDKGAVAEWAVKKIIEKFAEQFAALTDNYLKERAGDLRT
LGQRLLFHLDDSVQGPNAWPERFILVADELSATTLAELPQDRLAGVVVRD
GAANSHAAIMVRALGIPTVMGADIQPSVLHRRTLVVDGYRGELLVDPEPV
LIQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK
LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTL
DVGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATG
NLSILLPMVTSIDEVDEARRLIERAGREVEEMIGYAIPKPRIGIMLEVPS
MVFMLPHLANRIDFISVGTNDLTQYILAVDRNNTRVASIYDSLHPAMLRA
LSMVAQEAEKNGLDLRLCGEMAGDPMCVAILIGLGYRHLSMNGRSVARVK
YLLRHIDFEDAQTLARRSLEAQMATEVRHQVAAFMERRGMGGLIRGGL
>SC4259 ptxA, putative PTS enzyme IIsga subunit
MKLRDSLAENNSIRLQAEANTWQEAVKIGVDLLVAADVVEPRYYQAILDG
VEQFGPYFVIAPGLAMPHGRPEEGVKKTGFSLVTLKKPLEFNHEDNDPVD
ILITMAAVDANTHQEVGIMQIVNLFEDEANFDRLRACRTAQEVLDLIDRT
NAAA
>SC2345 ptxA, putative phosphotransferase system
MLGTWLSDATITLRESVETWSQALEICGKPLLDAGVIAPEYITAIVQQHQ
KLGPYYVLAPGLAMPHARPEEGAKGLGLSLLKLQHGVSFGADEFDPVDII
IMLAAPDKHSHIEMISALAELFSSDVDMEKLHQAKNLEDIKTIIDRF
>SC1987 rcsA, positive transcriptional regulator of capsular/exo-polysaccharide synthesis (LuxR/UhpA family)
MSTIIMDLCSYTRLGLSGYLVSRGVKKREINDIETVDELAIACGAHQPSV
VFINEDCFIHTPSDSQQIKQIINQHPDTLFIVFMAIANVHFDEYLLVRKN
LLISSKSIKPDSLDTLLGDILKKESGISGTINLPTLSLSRTESSMLRMWM
EGQGTIQISDRMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTN
GIFVNMR
>SC2273 rcsB, response regulator (positive) in two-component regulatory system with RcsC (LuxR/UhpA familiy)
MTPTSKACCSKVAQYMNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEF
EDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIV
LTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVS
RLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQ
KKSAMMKLGVENDIALLNYLSSVTLSPTDKE
>SC2896 relA, (p)ppGpp synthetase I (GTP pyrophosphokinase)
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHP
DADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVG
KSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVV
IKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELED
YCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVY
GRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHY
RHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELG
VAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQ
VFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
FTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQD
RDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGD
IRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVE
GVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPE
RIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASR
SDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>SC2363 rocR, putative regulatory protein
MASTNQELASALRMFSRFFDLIHQPLAVINERGEYVYYNQESADLDGYSI
ERAMGKHMLDVYPGMKETQSTMLSSLKKGVEYIGHYQIYYNARGQAVDYQ
HTTAPLYASDGGMVGVIEIGRNMSGVRRLQEQVVELNQLLYADHHEKHHA
IITENPEMLSNIAKAKRLAASNIPVTIVGETGTGKELFSRLIHQCSKRAN
KPFIALNCGALPPTLIESTLFDTVRGAYTGAENSQGYLELANGGTLFLDE
LNAMPIEMQSKLLRFLQDKTFWRLGGQQQLHSDVRIVAAMNEAPVKLIQQ
ERLRADLFYRLSVGMLTLPPLRARPEDIPLLANYFFDKYRNDVPQDIHGL
SETARADLLNHAWPGNVRMLENAIVRSMIMQEKDGLLKHIIFEQDELNLG
VPETAPENPLPSSPDPQYEGSLEVRVANYERHLIETALDTHQGNIAAAAR
SLNVSRTTLQYKVQKYAIRFGVVRN
>SC2644 rseA, anti sigma E (sigma 24) factor, negative regulator
MIIKFNRLSGVDDSGILEKVLGMQKEKLSALMDGETLDSELLKALTHDPE
MQKTWESYHLIRDSMRGDTPDVLHFDISARVMAAIENEPVRQVSPLIPEA
QPAPQQWQKMPFWKKVRPWAAQLTQMGVAACVSLAVIVGVQHYNGQSETS
QQPETPVFNTLPMMGKASPVSLGVPSEAAPVGSQQQQVQEQRRRINAMLQ
DYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ
>SC2643 rseB, anti sigma E (sigma 24) factor, negative regulator
MKQLWFAMSLVAASLFFSANASADPASGALLQQMNIASQSLNYELSFVSI
TKQGVESLRYRHARLDGRPLAQLLQLDGPRREVVQRGNEISYFEPGLEPF
TLNGDYIVDSLPSLIYTDFKRLAPYYDFISVGRTRIADRLCEVIRVVARD
GTRYSYIVWMDMDTKLPMRVDLLDRDGETLEQFRVIAFTVSQDIGSNMQA
LAKANLPPLLSVPGGEKTKFNWSPSWVPQGFSEVSSSRRPLPTMDNLPIE
SRLYSDGLFSFSVNVNRATQNSSDQMLRTGRRTVYSSVRDNAEITIVGEL
PPQTAKRIADSIKFRAVQ
>SC2642 rseC, regulator of sigma E (sigma 24) factor
MIKEWATVVSWQNGQAVVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHT
IVVPSAEPLAPGQKVELGIAEKSLLGSALLVYMSPLAGLFLCAALFQMLF
GSDLAALSGAVLGGVGGFLVARGYSRKLAERDAWQPVILNVALPPDLVRV
ETTSIETRQ
>SC1493 rstA, response regulator in two-component regulatory system with RstB (OmpR family)
MNRIVFVEDDAEVGSLIAAYLAKHDIDVIVEPRGDRAEDLILTTQPDLVL
LDIMLPGKDGMTICRDLRHRWQGPIVLLTSLDSDMNHILALEMGACDYIL
KTTPPAVLLARLRLHLRQSEQTQQAKSLQESALTPHKALRFGALTIDPLN
RAVQLNGDFISLSTADFELLWELATHAGQIMDREALLKTLRGVNYDGLDR
SVDVAISRLRKKLLDSAAEPYRIKTIRNKGYLFAPHAWDETTG
>SC1488 rstB, sensory histidine kinase in two-component regulatory system with RstA
MKKLFVQFYLLLFVCFLVMTLLVGLVYKFTAERAGRQSLDDLMKSSLYLM
RSELREIPPREWGKTLKEMDLNLSFDLRVEPLNHYKLDAATTQRLREGDI
VALDDQYTFIQRIPRSHYVLAVGPVPYLYFLHQMRLLDIALMALIAFSLA
FPVFIWMRPHWQEMLRLESAAQRFGEGHLTERLHFDNGSSFERLGVAFNQ
MADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSENLTPPESQALNR
DIGQLEALIEELLTYARLDRPQNELMLTEPDLPAWLLAHLQDVQSVTPER
AVNLVTCVVGDYGALDMRLMSRVLDNLLNNALRYSRTTVQVSLLLDGSQA
TLIVEDDGPGIEADARERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALA
MGGSVVCDESELGGAKFSFHWPVWHAMSNVTAA
>SC3453 rtcR, sigma N (sigma 54)-dependent regulator of rtcBA expression (EBP familiy)
MRKTVAFGFVGTVLDYAGRGSQRWEKWRPTLCLCQQETLVVHRLELLYDA
RSRSLFEGLKKDIASVSPETEVVGVEIAIRNPWDFEEVYACLHDFARSHT
FHPEDEDYLIHITTGTHVAQICWFLLAEARYLPARLAQTSPPRKKDKPHS
TGDVTIIDLDLSRYNDIATRFAQEREETLNFLKSGIATRNPCFNRMIEQI
ERVAIRSRSPILLNGPTGAGKSFLARRIYELKLARHQFSGPFVEVNCATL
RGDTAMSALFGHVKGAFTGAREERAGLLRSADGGMLFLDEVGELGADEQA
MLLKAIEEKRFYPFGSDQQVSSDFQLIAGTVRDLRQRVAEGTFREDLYAR
INLWTFELPGLRQRQEDIEPNLDYELERHAALTGDSVRFNTEARRAWLSF
ATSPQAAWRGNFRELSASVTRMATLADNGRITVETVDDEIARLRYSWNDH
RPSALDGLPGIDATALDLFDRMQLENVVAVCRQAKTLSDAGRQLFNVSRQ
GKATVNDADRLRKYLARFGLTWDVLQN
>SC2231 rtn, putative membrane protein involved in resistance to lambda and N4 phages
MLTRDSSSGRKILLTCIITGIAAALLIGSLQFFLSWHKRDVKYNTLLSDV
QHYLASYFADLKATTDILQPLTINTCQQVGAELTSRAAFSLNVRAFLLIK
DKKVFCSSATGAMNMPLQQLVPDIDIRKDVAMATLPGTPMMPNKPTMVIW
YRNPLLNDSGVFTSLNINLTPYLLYTTRQDDFNGIALIVGNTALSTFSSR
LLTVAELPGTPSRQATINGLPLKIQLYADSWTYNDLWYALMLGCISGIVA
GFICYFIYALRTRPGKEILTAIKHEQFYVVYQPVVDTRTLSVTGLEVLLR
WRHPTAGEIPPDAFIHYAEAQQLIVPLTQHLFELIARDAPTLQKVMPVGA
KFGINIAPEHLHSDSFKEDMHRLKDALPAHHFHIVLEITERDMLQQYEAA
KLFEWLHSAGFEIAIDDFGTGHSALIYLERFTLDYLKIDRGFIQAIGTET
VTSPVLDTVLTLSRRLNMLTVAEGVETPEQARWLRDHGVNYLQGYWISRP
LPLKDFVLWMSAPSVPEW
>SC0386 rtn, putative Diguanylate cyclase/phosphodiesterase domain 1
MKVRKLFLMLFIAVPLIVMILVGLLAGIFQLKRDIAVSANTLLRFSADIS
AASWQVAGKAARLAESSCSDTLKELSRTRAFTPYVRDIGFLENGDITCSF
VTGTERYHFSRLAGLSLPASYPERWLRSIGSMAEGPDRLVVVYVKKVAAD
KAAFVIVDSQYVQELMEILAAERASAFSLTFGAGEAITSAATLRGKAFLT
QRFTSTDHTIQLMVRTPFSTLSAYWLQNLFIFIPLSLCLSVGMMLFYRRW
YLKRLSLAREIARGITHNEFTVHYQPVFNVKHGSCGGVEALMRWPQPDGR
FITPDIFITAAENEGMIIPLSRHLFELIVHDVINWTVPDDFYISVNISPA
HLMDDGFIQDIEALRTRLGTITLMLELTERSLIVEPSQVAEKLSTLREKG
VLIAIDDFGTGYCSLSYLQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTII
TLSQRLGLNVVAEGVSTQHQLRYILSHGVGFVQGFLYARPMGTNDFMSWL
GKSAQRQNGLLKGESGSASDLVAE
>SC1612 sgcA, putative Sugar Specific PTS Enzyme II
MINDVKWVQAQRHASDWRHALDIAVRPLITFGAAAPCYLDGIIENTLKWG
PYYLIAPGIALPHARPEQGANHNQISVTTLATPVAFGNADCDPIWLLLCA
SATDAEAHIRTIQRISQWLDSPESVAMLQDAPNDAALFAQLTALR
>SC2817 sipB, cell invasion protein
MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDVVATKAG
DLKAGTKSGESAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVS
LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKT
DTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQTEAAVEQAGKEATEAKE
ALDKATDATVKAGTDAKAKAEKADNILTKFQGTANAASQNQVSQGEQDNL
SNVARLTMLMAMFIEIVGKNTEESLQNDLALFNALQEGRQAEMEKKSAEF
QEETRKAEETNRIMGCIGKVLGALLTIVSVVAAVFTGGASLALAAVGLAV
MVADEIVKAATGVSFIQQALNPIMEHVLKPLMELIGKAITKALEGLGVDK
KTAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAAAKLGNALSKMMGETIK
KLVPNVLKQLAQNGSKLFTQGMQRITSGLGNVGSKMGLQTNALSKELVGN
TLNKVALGMEVTNTAAQSAGGVAEGVFIKNASEALADFMLARFAMDQIQQ
WLKQSVEIFGENQKVTAELQKAMSSAVQQNADASRFILRQSRA
>SC1950 sirA, putative response regulator (LuxR/UhpA familiy)
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDV
VLMDMNMPGIGGLEATRKIARSTADIKVIMLTVHTENPLPAKVMQAGAAG
YLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPAKTETPFASL
SERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL
THLAIRHGLCNAETLTSQ
>SC2389 sixA, phosphohistidine phosphatase
MQVFIMRHGDAALDAASDSVRPLTPCGCDESRLMANWLKGQKVDIERVLV
SPFLRAEQTLDVVGDCMNLPAQVDVLPELTPCGDVGLVSAYLQALANEEI
GSVLVISHLPLVGYLVSELCPGETPPMFTTSAIANVTLDESGKGTFNWQM
SPCNLKMAKAI
>SC3666 spoT, (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPV
AVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGV
SKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSL
RPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKE
VVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLK
EQRFHSIMDIYAFRVIVHDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKA
NGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTT
AQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVEL
PAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPG
ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKL
AEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQQGEAVVPT
VAQSNHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESC
RNIRGYQKEPEKFMAVEWDKETEQEFITEIKVEMFNHQGALANLTAAINT
TTSNIQSLNTEEKDGRVYSTFIRLTARDRVHLANIMRKIRVMPDVIKVTR
NRN
>SC2810 sptP, protein tyrosine phosphate
MLKYEERKLNNLTLSSFSKVGVSNDARLYIAKENTDKAYVAPEKLSSKVL
TWLGKMPLFKNTEVVQKHTENIRVQDQKILQTFLQALTEKYGETAVNDAL
LMSRINMNKPLTQRLAVQITECVKAADEGFINLIKSKDNVGVRNAALVIK
GGDTKVAEKNNDVGAESKQPLLDIALKGLKRTLPQLEQMDGNSLRENFQE
MASGNGPLRSLMTNLQNLNKIPEAKQLNDYVTTLTNIQVGVARFSQWGTC
GGEVERWVDKASTHELTQAVKKIHVIAKELKNVTAELEKIEAGAPMPQTM
SGPTLGLARFAVSSIPINQQTQVKLSDGMPVPVNTLTFDGKPVALAGSYP
KNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYFRGSYTFGEVH
TNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQ
LEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDN
PHSNLEQVRADFRDSRNNRMLEDASQFVQLKAMQAQLLMTTAR
>SC1329 spy, periplasmic protein related to spheroblast formation
MRKLTALFVASTLAMGAANLAHAAETTTAAPADAKPMMQHKGKFGPHHDM
MFKNLNLTDAQKQQIRDIMKAQREQMKRPPLEERRAMHDIIASDTFDKAK
AEAQITKMEAQRKANMLAHMETQNKIYNVLTPEQKKQYNANFEKRLTERP
AQEGKMPAAAE
>SC1419 sseB, Secretion system effector SseB
MSSGNILWGSQNPIVFKNSFGVSNTDTGGQDDLSQQNPFAEGYGVLLILL
MVIQAIANDKFIEVQKNAERARNTQEKSNEMDEVIAKAAKGDAKTKEEVP
DDVIKYMRDNGILIDGMTIDEYMAKYGDHGKLDKGGLQAVKAALDNDANR
NTDLMSQGQITIQKMSQELNAVLTQLTGLISKWGEISSMIAQKTYS
>SC1413 ssrA, Secretion system regulator:Sensor component
MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHII
EDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRH
LSVGPSNCTPTLNGEKHRLFLQSSDIDEKSFRRDSFILNHKNEISLLSTD
NPSDYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGV
FFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIPQKIRTQLENV
TLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDEL
DSIAGAFNQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHL
TVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLSLLAIINN
LLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQH
VPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDS
GKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNA
LLNAELLYFPGKLYDLAQQLILCTPNIPVINNLLPPWQLQILLVDDADIN
RDIISKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIEC
VQLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLATL
ARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLA
DIENAVSAGQKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIAL
EELTDLRQKIRMIFKNYTIT
>SC1412 ssrB, Secretion system regulator: transcriptonal activator, homologous with degU/uvrY/bvgA
MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEP
DILILDLSLPGINGLDIIPQLHQRWPAMNILVYTAYQQEYMTIKTLAAGA
NGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELKADTTNHQLL
TLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTEL
LNCARRMRLIEY
>SC3506 tcp, methyl-accepting transmembrane citrate/phenol chemoreceptor
MKNIKVITGVIATLGIFSALLLVTGILFYSAVSSDRLNFQNASALSYQQQ
ELGGSFQTLIETRVTINRVAIRMLKNQRDPASLDAMNTLLTNAGASLNEA
EKHFNNYVNSEAIAGKDPALDAQAEASFKQMYDVLQQSIHYLKADNYAAY
GNLDAQKAQDDMEQVYDKWLSQNAQLIKLASDQNQSSFTQMQWTLGIILL
IVLIVLAFIWLGLQRVLLRPLQRIMAHIQTIADGDLTHEIEAEGRSEMGQ
LAAGLKTMQQSLIRTVSAVRDNADSIYTGAGEISAGSSDLSSRTEQQASA
LEETAASMEQLTATVRQNTDNARQATGLAKTASETARKGGRVVDNVVSTM
NDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAG
EVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTR
VTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAAAAL
EDQANELRQAVAAFRIQKQPRREASPTPLSKGLTPQPAAEQANWESF
>SC2716 tctD, tricarboxylic transport: regulatory protein
MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVL
DINMPGMDGLEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLP
KPFELEELDARLRALLRRSAGQVHEVQQLGELIFHDEGYFLLQGQPLALT
PREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEVSPESIELYIHRLRKKL
QGSDVRITTLRGLGYVLERGDEVG
>SC2715 tctE, tricarboxylic transport: regulatory protein
MYELRRCAAWVMCWSAAMKWVKPQSLYLQLLLFLGLPLILLWGLSAFNSY
VNALQAATQAYDRTLLSSARTVSERLVVRNNHLEVNVPWVVLDSFELNMN
DRLYYKVVDPSGKVISGYDDLPVMPPATPRTRLYPALAWFYHTEYRGEAI
RVARLLQPVNEGGIIGMAEIYVAETLQSRRYLAGQLLFSSWISQGLLVLL
TLVLVGWLLRRILRPMRQLSSLMVRREPGLLTPLPELLPWSETRLLIVAF
NRYIDRLRGILSRQERFSADASHQLKTPLAVLKTQAAVALASQHPHHWYE
SLQAMSVTLDSTIQLTERLLQLSAVKHKEQGERRFSPVNLYDIVQSGCFT
RLAQARSKHIDLGYEGEQEAMWIEGDEVLLSELCGNLLDNALKYTPEQGI
VTARLERDGDAVTLVVEDSGPGIDDEHIHLALQPFHRLDNVGNVAGAGIG
LALVNDIARLHRTHPHFSRSEALGGLYVRIRFLSLVPQ
>SC3742 torR, response regulator in multi-component regualtory system wtih TorS (sensory kinase) and TorT (periplasmic sensor), regulates tor operon (TorR family)
MSHHIVIVEDEPVTQARLQAYFEQEGYSVSVTDSGAGLRDIMEHEHVSLI
LLDINLPDENGLMLTRALRERSTVGIILVTGRCDQIDRIVGLEMGADDYV
TKPLELRELVVRVKNLLWRIDLARPTPQNASENCYMFSGYCLNVMNHTLE
HNGEAIKLTRAEYELLLAFVTNPGKVLHRERLLRMLSARRVETPDLRTID
VLVRRLRHKITPELLVTQHGEGYFLASEVY
>SC3743 torS, sensory kinase in multi-component regulatory system with TorR (regulator) and TorT (periplasmic sensor), regulates tor operon
MSTPSLTRRLWLAFALMAALTLLSTVIGWISLRVISQVEQTNTQALLPTM
NMARQLSEASAYELFSAQNLTNADSEGVWLAQGKMLKAQSLKINHLLQAL
SEQGFNTSAIARQEKEIAQTLGQQGTLVGEILTLRAQQQQLSRQIAEAAE
SIAAQAHGQANNAATSAGATQAGIYDLIESGKGDQAERALDRLIDIDLEY
VNQMNELRVNALRFKQLIVTLKDAQGLSDAEDTDEKLNQLVKILSRRQQR
IEDPTVRAQIADALEKINQYTTLVTLFRKENAIRDQLQTLMANNLFQFTR
FSTEVSQLVNAIEKRNEAGLARLTHASQRGQIGLVILGILALCSLSFILW
RVVYRSVSRPLAQQTQALQRLLEGDIDSPFPEAAGVSELDTISRLMEAFR
ANVRKLNRHREDLAEQVRSQTAELHALVLEHRQARAEAEKANEAKSTFLA
AMSHEIRTPLYGILGTVQLLADKPLMANYRDDLQAINDSGESLLAILNDI
LDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLP
STLQGDPRRIRQIVINLLSNAAKFTDRGSIVLRTFCDDQNWFIEVEDTGC
GIPEAKLTAIFKPFVQATGRRGGTGLGLAISASLAEAMGGTLTVTSTLHV
GSCFRLQLPVCHSKPASKSAFREPINLNGLRLLLIEDNMLTQRITAEMLT
GKGVKVSVAESANDALRCLAEGESFDVALVDFDLPDYDGLTLAQQLMSLY
PAMKRIGFSAHVIDDNLRQRTAGLFCGIIQKPVPREELYRMIAHYLQGKS
HNARAMLNEHQLAGDMASVGPEKLQQWVALFKDSALPLVEESEAARAMND
DVNIKRLAHKLKSGCASLGMTQATEACRELELQPLSDIDIKTIVTQGVTA
LDAWIAGHPSP
>SC1621 trg, methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor
MGNTFSMQASHKLGFLHHIRLVPLFSSILGGILLLFALSAGLAGYFLLQA
DRDQRDVTDEIQVRMGLSNSANHLRTARINMIHAGAASRIAEMDEMKANI
AAAETRIKQSQDGFNAYMSRAVKTPADDALDNELNARYTAYINGLQPMLK
FAKNGMFEAIINHENEQAKQLDAAYNHVLLKAIELRTERARLLSEQAYQR
TRLGMMFMIGAFTLALVLTLMTFMVLRRTVIQPLQQSASRIERIAAGDLT
MADEPTGRSEIGRLSHHLQQMQHALQQTVGAVRQGAEEIYRGTSEITAGN
TDLSSRTEQQAAAIEQTAASMEQLTATVKQNADNAHHASKLAEDASGKAS
RGGQMVSGVVQTMGNISTSSKKISEITAVINSIAFQTNILALNAAVEAAR
AGEQGRGFAVVASEVRTLASRSAQAAKEIEGLIGASVSLIEQGSEEVIAA
GSTMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQNA
SLVEEASAAAASLEEQAARLTQAVDAFHLQDTGATMRSSFL
>SC4385 tsr, methyl-accepting chemotaxis protein I, serine sensor receptor
MLKRIKIVTSLLLVLALFGLLQLASGGLFFNSLKNDKENFTVLQTIRQQQ
SALNATWVELLQTRNTLNRAGIRWMMDQSNIGSGATVAELMQGATNTLKL
TEKNWEQYEALPRDPRQSEAAFLEIKRTYDIYHGALAELIQLLGAGKINE
FFDQPTQSYQDAFEKQYMAYMQQNDRLYDIAVEDNNSSYNQAMWVLVSVL
IAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIASGDLVKRIDVEGSNEMG
QLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQQAA
SLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQT
MRDIASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA
GEVRNLAQRSAQAAREIKSLIEDSVSRVDVGSTLVESAGETMDEIVNAVT
RVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNASLVEESAAAAAA
LEEQASRLTQAVAVFRIHQQQQRAREVAAVKTPAAVSSPKAAVADGSDNW
ETF
>SC1408 ttrR, Tetrathionate reductase complex: response regulator
MATIHLLDDDTAVTNACAFLLESLGYDVKCWTQGADFLAQASLYQAGVVL
LDMRMPVLDGQGVHDALRQCGSTLAVVFLTGHGDVPMAVEQMKRGAVDFL
QKPVSVKPLQAALERALTVSSAAVARREIILCYQQLTPKERELASLVAKG
FMNREIAEAMNIAVRTVEVHRARVMEKMQAGSLAELIRRFEKMASPETRI
RTTYEP
>SC1407 ttrS, Tetrathionate reductase complex: sensory transduction histidine kinase
MRGKTVRRLAVLAAVGLLCHGAWAGTWNIGILAMRGEASTRSHWQPLAKT
LSQQLPGETFHIQPLDLHQMQEAVNQGTVQFVITNPAQFVQLSSHAPLRW
LASLRSTRDGKAVSNVIGSVILTRRDSGITTAHDLIGKTVGAIDAQAFGG
YLLGYKALSDAGLRPERDFHLRFTGFPGDALVYMLREKAVQAAIVPVCLL
ENMDQEGLINKKDFIALLSRPTPLPCLTSTPLYPDWSFAALPAVSDALAD
RVTRALFNAPAAASFHWGAPASTSQVEALLRDVRQHPQQRRLWLDVKSWL
IQHQLMVGGVILAFLLLTLNYIWVMLLVRRRGKQLERNSVVLHQHERALE
TARQMSVLGEMTSGFAHELNQPLSAIRHYAQGCLIRLRAADEQHPLLPAL
EQIDQQAQRGADTLRNLRHWVSQAQGNPVLTEAWKAIAIREAIDHVWQLL
RMAQQFPTVTLHTEVSAALRVTLPSVLLEQVLANIILNAAQAGATHLWIV
AERTENGISIVLQDNAGGIDEALLRQAFQPFMTTRKEGMGLGLAICQRLV
RYGRGDISIRNQTAPDGLSGTVVTIHFLHENGGRDGDNSSTG
>SC3900 typA, GTP-binding elongation factor family protein
MIENLRNIAIIAHVDHGKTTLVDKLLQQSGTFDARAETQERVMDSNDLEK
ERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVD
AFDGPMPQTRFVTKKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVN
LDATDEQLDFPIIYASALNGIAGLDHEDMAEDMTPLYQAIIDHVPAPDVD
LDGPLQMQISQLDYNNYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAK
VGKVLTHLGLERIDSDIAEAGDIIAITGLGELNISDTICDPQNVEALPAL
SVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEET
EDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPY
ENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIG
FRSEFMTMTSGTGLLYSTFSHYDDIRPGEVGQRQNGVLISNGQGKAVAFA
LFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASG
TDEAVILVPPIKMSLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRA
NRGQKEE
>SC3710 uhpA, response regulator (repressor) in two-component regulatory system wtih UhpB, regulates uhpT operon (LuxR/UhpA family)
MNSRALIVKVSAFFLSIRTEPMITVALIDDHLIVRSGFAQLLGLEPDLQV
VAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLS
VHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAVK
LAAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEK
LGVSNDVELAHRMFDGW
>SC3709 uhpB, sensory histidine kinase in two-component regulatory sytem with UhpA
MTLNWRIACLTVGNEHFFSRFITVVACFFIFSAAWFCLWSISLHLVERPE
LAALLFPFGLRLGLMLQCPRGYWPVLLGAEWLLVYWLAQEVALTHLPLLM
IGSVLTLLPVALTSRYRHQRDWRTLLLQGAALTAAALLQSLPWLGQGEAA
WNALLLTLTGGLTLAPICLVFWHYLTSTTWLPLGPSLVSQPVNWRGRHLI
WYLLLFIVSLWLQLGLPAELSRFTPFCLALPIIALAWHYGWQGALIATLM
NAIALIASQTWHDHPVDLLLSLLAQSLTGLLLGAGIQRLRELNQSLQKEL
ARNHRLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLAADN
GGVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLAQAIRSLLREME
LESRGIVSHLDWRIDETALSESQRVTLFRVCQEGLNNIVKHANASAVTLQ
GWQQDERLMLVIEDDGSGLPPGSHQQGFGLTGMRERVSALGGTLTISCTH
GTRVSVSLPQRYV
>SC2001 umuD, error-prone repair: SOS-response transcriptional repressors (LexA homologs, RecA-mediated autopeptidases)
MEFFRPTELREIIPLPFFSYLVPCGFPSPAADYIEQRIDLNELLVSHPSS
TYFVKATGDSMIEAGISDGDLLVVDSSRNADHGDIVIAAIEGEFTVKRLQ
LRPTVQLIPMNGAYRPIPVGSEDTLDIFGVVTFIIKAVS
>SC3520 uspA, universal stress protein A
MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKISLIHVDVNYSDLYTGL
IDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIK
KYDMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE
>SC0308 virG, similar to Shigella VirG protein
MKNFVRTTLLAATLAGVSFGAFATAVPNPPLPAQDPIVQHLKLTNDQITR
IKKLHQQLETDVSQISMKGIKDGALIEVIKSGKWDDAAVKQQLAAFSNIE
QQARYYRVKYYFDLSKVLTPEQRQQVQQDLAQALE
>SC2118 wzb, putative protein-tyrosine-phosphatase in colanic acid export
MGNVCRSPTAERLLKRFHPSLTVASAGLGALVGKGADPAAASVASAHDLS
LENHCARQISARLCREYDLILTMEKRHIAALCDIAPEMRGKVMLFGHWDS
EREIPDPYRKSRDAFEAVYTLLERSARQWAQALNAEQGKP
>SC0426 yaiC, putative diguanylate cyclase/phosphodiesterase domain 1
MFPKIMNDENFYRKAVEQAVAPPDPLDDRQRSGLRFARRIRLPRAVGLGG
MFLPVAAVLVSQPVFGGWWLLLVGWSFVWPHLAWQWAAKALDPLRQEIYN
LKVDAILSGMWIALMGVNMLPAAALFMMMSMNLMGAGGRRLFTVGMGLLL
ASCLVTLQLTGLPVAMRSSSLEVTLSLPVIMLYPLLFAWVSYQTAIKLAE
HKRRLQAMSSRDGMTGVYNRRHWEILLRNEFDHSRRHHREATLLIIDIDH
FKSINDTWGHDVGDEAIIALTRQLQITLRGSDIIGRFGGDEFAVIMCGTP
ADSAITAMSRVHERLNTLRLPGAPQVMLRISVGVAPLTPQIGHYREWLKS
ADMALYKAKNAGRNRTEVAA
>SC0645 ybdQ, putative Universal stress protein UspA and related nucleotide-binding protein
MYKTIIMPVDVFEMELSDKAIRHAEFLAQQDGVIHLLHVLPGSASMSLHR
FAADVRRFEEHLQHEAETRLQTMVGHFSIDPSRIKTHVRFGSVRDVVNEM
GEELDADVVVIGSRNPSITTHLLGSNASSVVRHATLPVLVVR
>SC0821 ybiI, putative DnaK suppressor protein
MASGWANDDAVNEQINNTIEDAVARARGELPHGESRDECESCGDPIPEAR
RKAVPGVRLCIACQQEKDLHNATFSGYNRRGSKDSQLR
>SC1697 yciR, putative PAS/PAC domain; diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2
MMKQIQEQTALNPLHSHWRLADDRNVLYLSPTGETDAEKTVELSPEQAGR
IREITAITSSLLITLLIEKQVTAVHLVGRKINNREWAGSLATWPDTPAVA
PTQAQELSFAEQIVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIG
QSVFKLFMSRREAVASRHYIENFFRNGNAYEIERWIKTRKGQRLFLFRNK
FVHNGSGKNEIFLICAGTDITEERRAQERLRILANTDTVTGLPNRNAIHE
FINHAIASAGESQVGIVYLDLDNFKKINDAYGHMFGDQLLQAVSLALLSC
LEEDQLLARLGGDEFIVLAAHTSQAALEAVASRILTRLRQPFRIGLIEVY
TGCAIGISLAPRHGQDSDSLIRTADTAMYNAKEGGRGQFCVFSPEMNQRV
FDYHWLDTNLRKALENDQLLIHYQPKITWRGEVRSLEALVRWQSPERGLI
PPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGINLRVAVNFSARQ
LADQTLFTALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQL
GAQIHLDDFGTGYSSLSQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAI
VAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPAVSFERW
YKRYQTKKMR
>SC1657 ydaA, putative universal stress protein
MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDFSYEMTT
LLSPDERTAMRQGVISQRTAWIREQAKYYLEAGVPIEIKVVWHNRPFEAI
IQEVIAGSHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPW
PEGGKALVAVNLASEEPYHNALNEKLVKETLQLAEQVNHTEVHLVGAYPV
TPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFSIDEKVTHVGKGLP
EEVIPDLAEHLQAGIVVLGTVGRTGLSAAFLGNTAEQVIDHLRCDLLVIK
PDEYQTPVELDDEDD
>SC1363 ydiV, putative Diguanylate cyclase/phosphodiesterase domain 1
MIASLDELYHSELFFLPVMDENAWLVGLAIIATFAAEDGAVRMPTELVAP
RLSVEEQYCLFVEKLALLETCQHFFIQHKLIAWLNLPPAISDLLLLDSEL
FSRAARFPFLELAINENYPGLNQGKNNETLANLAMHFPLMLANFGSGEAS
TKAIFDGLFKRVMLDKNFIQQRAEMISFEPFMHAIVAQISSSCESLMIAG
IDTEAMFARAAPLGFSAFQGGLWPPVPVSQLIKLVQR
>SC1690 ydiV, conserved hypothetical protein
MRYFFMAEPIRAMEGDLLGVEITTHFASSPARPLHPEFVISSWDNSQKRR
FLLDLLRTIAAKHGWFLRHGLFCIVNIDRGMAQLVLQDKDIRALLHAMLF
VELQVAEHFSCQDNALIDPLIHALHKQPNPLWLGDLGVGNATAAPLVCGC
FSGVKLDRSFFVSQIEKMTFPLLVKHIRRYCDKIVVGGQENTRYLPVLKT
AGIWATQGSLFPSVALEEVETLLLGSRMNTLRELN
>SC1297 yeaG, putative Ser protein kinase
MCEKTKGWHIMNIFDHYRQRYEAAKDEEFTLQDFLTICRQDRSAYANAAE
RLLMAIGEPNMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVS
YLKHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMQRVPIYVLSANGE
RSPVNDHPLCLFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGD
ITKFRVVKVWPSILEQIAIAKTEPGDENNQDISALVGKVDIRKLEHHAQN
DPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGI
SALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIK
IYEKLLNHSELAHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDG
ESLKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHAEVA
ANPVHLFYVLEQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTA
YLESYSEYGQNIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKI
EKPAGISNPKDFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFS
NTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRV
RKSS
>SC1295 yeaJ, putative Methyl-accepting chemotaxis protein; Diguanylate cyclase/phosphodiesterase domain 1
MNLHHKALRHFISASVIVLTSSFLIYELIASDRAMNAYMHYIMERADSSF
LYDKYQNQSIAAHLMRTFEAPGDPVTAEKRRAFCDAFEAINGTHGVNLTR
HNYPALHGTLQTAATQCTDNLDDALLLPAFDQAVSINRSQDDHSHGLGTL
ELKFRYYVDLNKHYVYFYDLINSRRFAMHRWTFLQKGTMGINRKDIDKLF
TGRTVISSIYMDDITQENVMSFLTPVYLAGTLKGIVMVDVNQDNLKNIFY
TQDRPLVWRYLNVTLKDMDSGKEIIINQSKNNLFQYVNYSHDIPGGLRVS
LSLDLTYFLVSSWKALAFYLLATALLLNMVRMHFRLYRNVTRENISDAMT
GLYNRKILTPVLEQRLQRLVNTGTPVTFVAIDCDRLKLINDTQGHQEGDR
IITLLAKAIKTSIRKSDYAIRLGGDEFCIILVDYAADLAIHLPERIIRNL
QIIAPDKTVHFSAGIYNMQPNDTINDAYQASDAQLYLNKQQKQHRSS
>SC1843 yebR, putative GAF domain-containing protein
MTGIILSKNAFNAYFNSLCLGVRPRSDYIMSKTELYAALNRDFQSLMAGE
TSFLATLANTSALLFERLTEVNWAGFYLLEGDTLVLGPFQGRIACVRIPV
GRGVCGAAVAQNKVQRIDDVHAFDGHIAYDAASNAEIVLPVTVGERIIGV
LDIDSTAFGRFTEEDEHGLRTLVAQLETVLATTDYKKFFASVAG
>SC1934 yecG, putative universal stress protein
MSYTHILVAVAVTPESHQLLAKAVSIARPVQAKVSLITLASDPELYNQFA
APMMEDLRAVMHEETENFLKMLGEKADYPIEQTFIASGELSQHILAVCRK
HHVDLVICGNHNHSFFSRASCSAKSVVSASQVDVLLVPLAGD
>SC1991 yedQ, putative inner membrane protein
MPHETLLDNQGWFKKLARRFGPGHVVNTCFLIVMLFSTLLTWREVMILKD
AYVASQRNHLGSVANVLDRQLQFNMDRLIFLRNGMHEALVAPLAFSALQS
AVTQFEQRRVRHFWQLELDKRRTLPLYGVSDQFVARTTLLSRESRDLANE
LTATLELGYLARLARSSAMLTLETMYVSCSGFYLSTLPTAYGSDIVSRYY
QYVTQPWFIEQSQRRNPQRGVRWFTSAQPYVADEQKKVTASLPLDHDNYW
YGVLAMDIPVASLQRFLRDAAEKDIEGEYQLYDNHLRLLTDSAPEQQTAN
TLNDRERALLAREIEKDTLGGLRLGTHYVSWERLDHFDGVLLRVHTLREG
IQGNFGSISIALTLLWVLFTAMLLISWGVIRHMVKNMFVLQNSLQWQAWH
DPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQ
AGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGATKAQALQIAERI
RQRINDKEILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKRLYYA
KQSGRNRICASDATQEREKK
>SC2126 yegE, putative PAS/PAC domain; Diguanylate cyclase/phosphodiesterase domain 1, Diguanylate cyclase/phosphodiesterase domain 2,
MSKPSQHVFVTVPHPLLRLVSLGLVAFVFTLFSLVLSRVGTQLAPLWFPT
SIMMVAFYRHAGRLWPGIAVACSLGSIGASLTLFPAASLNFSWTAINIIE
AATGAILLRKLLPSYNPLQNLNDWFRLAIGSAVIPPLLGGLLFWLIAPEA
VASKAFLIWVLSEAIGALTLVPLGLLFKPHYLLRHRDPHLLLETLLTLVI
TLALSWLAMRYIPWPFTCVIVLLMWSAVRLPRMEAFLIFLATVIVVSLML
ANDPTLLATPKTDVMVNMPWLPFLMILLPANMMTMVMYAFRTERKHITES
ESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHFLGYSQDELRTMTFQQL
TWPEDLNNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALLAVSLVRHK
DNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEALFQEKERLHITLD
SIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGAPLLTVLRITSGDKG
PLLEDIYRADRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSV
LVIQDVTESRKMLRQLSYSATHDALTQLANRASFEKQLQQRLQTIQESPQ
HHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSGDLLARLGG
DEFGLLLPDCNSDSARFIATRLINAINEYHFMWEGRLHRIGASAGITMIN
EHNCQPTEVVSQADIACYAAKNSGRGRLTVYEPQHALTSSKGMMPLEEQW
HMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAFRAGL
ADSALHHALDRRVFHEFFHHAATAVASKGLSVALPLSAAGLYSAPLIDEL
LEQLEHSPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVG
RDLQLFNLLPLHIVDYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIK
TLAGPVQNPQVLDTLSRIGVDLIYGDTIAEAQPLDLLLNTSYFAIH
>SC2174 yehT, putative regulator
MIKVLIVDDEPLARENLRILLQGQDDIEIVGECANAVEAIGAVHKLRPDV
LFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLL
KPIEEKRLEKTLHRLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQM
DDVAFVSSRMSGVYVTSSEGKEGFTELTLRTLESRTPLLRCHRQFLVNMA
HLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
>SC2175 yehU, paral putative sensor/kinase in regulatory system
MFLVIAWLMSKTRLFIPLMQVTVRLPHKLLCYVTFSIFCIMGTYFGLHIE
DSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTI
VEGLLGGLVHSVLIRRGRPDKVFSPLTAGAITCVAELVQMLIILLIARPF
NDALHLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKV
AASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDD
HHLPGKPISSGYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPL
RGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKA
LLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRK
NLKRPSEIVTLADEIEHVNAYLQIEKARFQSRLQVQLDVPSTLSRQKLPA
FTLQPIVENAIKHGTSQLLDTGNVAIRARREGQHLMLDIEDNAGLYQPSA
GSSGLGMSLVDKRLREHFGDDYGISVACEPDCFTRITLRLPLEEDA
>SC2413 yfeA, putative Diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2
MPDKCNVLKNIKIFLLAFCLTVPAILLSRLISPRATIDSSYIFLAWLPLC
VMFSVLFLFGRRGVAPMVGGMMLTNEWNFHLPLPQAMVLLFCQTFPVLLV
CAIVRWQLGARWRYGIPNQGIWLRVFWLGLMTPFGIKISMHLAGHYLAFP
VTISTFFGTGTAIFSIVDLLSLISAALILTLFFYYPLRMIVSPHYMRIFW
RRDVAPYLAKEKRLFTLLWFATLATLLAVLCTPFETKYIAGYLVPVLFIG
FTIGVGKISYLLLNFSWALTALFLLSYNRNFLQGVGSEYSLAFILSVLIS
FSICLLYMARINQRSEWLNRQWHSQALTDPLTQLPNLRALEQFLLQDAGQ
SVCYLRMENLEFLSRHYGMQMRVHCEREVFRVLQPLLLEKEKIFHLPGSE
LLLVLTGPETEARLQYMLNVLNNRKIYWNNTGLDMEYGASWGTFDGRQET
LQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQTTERVLRLQKIRQALE
RGALVLYVQPIRDAQGKGYDEILTRLRCDDGIMMPNQFIPLIAQFNLSVR
FDMQVMEALLQWLSAHPSAEQGARFSVNLMPLTLLQKETASRIMQLFKRY
GVPPASVIIEITEEQAFSHSEISMHNINQLRKFGLKIAIDDFGTGYANYE
RLKRLKADIIKIDGCFVKDILTDSLDAMIVKSITDLAKAKSLSVVAEFVE
TPAQRDLLLQLGVHSLQGYLIGRPRPLGK
>SC2500 yfgF, putative diguanylate cyclase
MKLNKTYINIRDKWWGLPLILPSILLPVLSSANTYALTSTGNVVLFYLPL
AFMLSLMLFFGWAALPGIVLAIFWRRYPQTGLYETLSVTMHFIITIVLSW
GGYRVFSPRRNNVSHGDAHLLFQRIFWQVFCSATLFLVIYQFAAFVGMYE
SKASLMGVMPFNINTLINYQALLVGNLVGVPLCYFIIRTLRNPLHLRGYY
QQLKLQIDSKATKKEIVIWLAVLTTLMFILCMPLTDNSSIFSTNYTLSLL
LPVMLWGAMRYGYKFISIIWAVVLITSIHYYQRYMPWYSGYDTQLAITSS
SYLVFSFIVNYMSVLATRQRVVSGRARRLAYLDPVVHLPNLRALNRALQN
APWSTICFLHVPGLELLGKNYGVMLRIQYKQKLSHWITPMLASNECVYQM
SGHDLVLRLNTEAHQQRIEALDKHIKQFRFIWDGLPLQPPVGVSYCCVRS
PVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAMHLQRDLKGRIAMMNRL
QQALEHDHFFLMAQPIFGVRGDVYHEILLRLRDDNGDVINPDNFLPVAHE
FGLPSAIDLWVIENTLRFMAASREYMPAHRFAINLSPTSVCRARFPAEVK
QLLTQYQVEPWQLVFEVTESNSLTNAEQAQLTLGQLQQFGCQIAIDDFGT
GYASYARLKNVDADILKIDGSFIRNIVSNSLDYQIVASICHLARMKNMQV
VAEYVESEEIRSVVLSLGIDYLQGYLIGEPQLLSEIQ
>SC2557 yfhA, putative transcriptional regulator of two-component regulator protein (EBP familiiy)
MISRKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEGLRVLHREK
VDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKG
VFSFLTKPIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQ
ARMVAQSDVSVLINGQSGTGKEIFAQAIHNASPRSNKPFVAINCGALPEQ
LLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLL
RVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNV
VSLKIPALAERTEDIPLLANHLLRQSAQRHKPFVRAFSTDAMKRLMTASW
PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFAEARNQFE
LNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE
>SC2559 yfhK, putative sensory kinase in regulatory system
MSDTLKRWSVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQAAV
TNRSTLIDARRSEAMTNVALEMERSYRQYCVLDDPTLAKVYQSQRKRYSD
MLDAHAGVLPDDKLYQALRQDLNALAQLQCKDSGPEAAAAARLEAFANAN
TEMVQATRTVVYSRGQQLQQEIAERGQFFGWQALVLFLVSLAMVLLFTRM
IIGPVKGIERMINRLGEGRSLGNTVTFTGPRELRSVGQRIIWLSERLAWL
ESQRHQFLRHLSHELKTPLASMREGTELLADQVVGPLTPEQKEVVDILDD
SSRNLQKLIEQLLDYNRKLVDSATELEAVDIAPLVDMVVSAHSLPARAKM
MHTDVDLEAERCIAEPMLLMSVLDNLYSNAVHYGAESGNICIRSRSQGST
VYIDVVNSGEPIPQTEREMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIR
RMQGEIQLVDDNAQEVCFRISLPLPASDKH
>SC2772 ygaA, putative regulator (EBP family)
MSFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALLRYESRQ
FIPLAIDGLAQDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDG
LIPGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVA
ALAAGALSNALLIEQLESQNMLPGSSGVFEPIKETHMIGLSPAMTQLKKE
IEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLVYLNCAALPES
VAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL
RVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV
FPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPGARRHLLNYGW
PGNVRELEHAIHRAVVLARATRAGDEVVLEEQHFALSEDVLPAPSAESFL
ALPACRNLRESTENFQREMIRQGRWRKIITTGRPVRGRWKPTSPTCIGWR
SVWD
>SC3150 ygiM, putative SH3 domain protein
MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDNYRLVGTV
NAGEEVTLLQSDANYGQIKDSSGRTAWIPLKELNTTPSLRTRVPDLENQV
KTLTDKLNNIDTTWNQRTADMQQKVAQSDSVINGLKEENQKLKNELIVAQ
KKVSAANLQLDDKQRTIIMQWFMYGGGVLGIGLLLGLVLPHMIPSRKRKD
RWMN
>SC3121 ygiX, putative transcriptional regulator (OmpR family)
MITFPFHVVSDPFNKVILNNFLRQKKNLFFCTSPAATRLTDGNASYRKEE
QMRILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVI
LDLTLPGMDGRDILREWREKGKQEPVLILTARDALAERVEGLRLGADDYL
CKPFALIEVAARLEALVRRASGQASSELHHGQVTLNPGNLVATLAGEPLA
LKPKEFALLELLLRNKGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRR
KLGSEFIRTVHGIGYTLGDA
>SC3122 ygiY, putative sensory histidine kinase in regulatory system
MKLTQRLSLRVRLTLIFLILVSITWAISSFVAWRKTTDNVDELFDTQLML
FARRLSTLDLNEINAPQRMAHTPKKLKHGHIDDDALAFAIFSADGKMLLH
DGDNGQDIPYRYRREGFDNGYLKDDNDLWRFLWLNSADGKYRIVVGQEWD
YREDMALAIVAAQLTPWLIALPFMLLILLLLLHRELRPLKKLAQALRFRS
PESETPLDAKGVPSEVRPLVEALNQLFSRIHSMMVRERRFTSDAAHELRS
PLAALKVQTEVAQLSGDDPLSRDKALTQLHAGIDRATRLVDQLLTLSRLD
SLNNLQDVAEISLEELLQSAVMDIYHPAQQANIDVRLQLNAHDVIRTGQP
LLLSLLVRNLLDNAIRYSPQGSVVDVTLHARSFTVRDNGPGVAPEILTHI
GERFYRPPGQSVTGSGLGLSIVRRIATLHGMTVSFGNAAEGGFEAVVRW
>SC4403 yhcK, putative diguanylate cyclase/phosphodiesterase domain 1
MTTPSWRSLRIKKYQFSLRLFLFLNAVSALFTLVFPLYQINVFCMPMIGI
VVLSVLLLIWHGKYGQKRINLPFISLLFGGIWAAHIALKYPALGHYDFSF
LLISLLSVLFIDSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLL
ALPMVGIAIQHVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNR
RGLQNRLDTLQAPGSHEHYVLLLDIDHFKAYNDHYGHMMGDQALIRVSAA
IRDAVRSRDVVCRFGGEEFLVLLTTAEPQQARATAERIRQEVYDLKIPHM
FNESVATNVTISIGIAPLTDRNIGDAIEKADKALYEAKHLGRNHILVSDD
MRAL
>SC3313 yhdA, putative diguanylate cyclase
MRLTTKFSAFITLLTGLTIFVTLIGCSLSFYNAVQYKYVSRVQATATAID
THLVTHDIVSLTPQIDELMIASDIVRVDLLQGERSVYSHSRARGYRPAGT
SDMYRELVVPLIKHPGMSLRLVYQDPMGNYFHSLITTAPLTLAIGFIVLI
LFLSVRWLQRQLSGQELLEIRSTRILNGERRANVRGSVYEWPARTSSALD
VLLSEIQFAHEQRSRLDTLIRSYAAQDTKTGLGNRLFFDNQLATLLEDQE
KVGVHGVVMMIRLPDFNLLRDSLGGNQAEEQMFMLINLLSTFIMRYPGSL
LARYHRSDFAVLLPHRTLKEAESIAGQLLKAVDALPANKMLDRDDMVHIG
ICAWRSGQSTEQVMEHAEAAARNAALQGGNSWAIYDDTLPEKGRGNVRWR
TLIEQMLNRGGPRLYQKPAVTREGRVHHRELMCRIYDGKEEVSSAEYMPM
VLQFGLSEEYDRLQISRLITLLGYWPDENLAMQLTVESLIRPRFQRWLRD
TLMQCEKSQRNRIIIELAEADVCQHISRLQPILRLVNALGVRVAVTQAGL
TLVSTSWIKALNVELLKLHPSLVRNIEKRTENQLLVQSLVEACAGTPTQV
YATGVRSRGEWQTLTKRGVAGGQGDFFASSQLLDTNVKKYSQRYSV
>SC3540 yhjB, putative transcriptional regulator (LuxR/UhpA familiy)
MKISLQQHIPGISIQSVGQAEELWQKIESAPDALVMLDSGLDAEFCREVL
QRIAQQFPEVKIIITAMDGSQKWLHEVMQFNVQAVVPRDSDAETFVLALN
AVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRA
LNISTGTVKAHLESLYRRLDVKNRTQAAMMLNESN
>SC3545 yhjH, putative Diguanylate cyclase/phosphodiesterase domain 3
MIKQVIQQLRVPDAGIENLQERRYWLQCERAYTYQPIYQTDGRLMAVELL
TVVTHPDNPSRRIAPDRYFAELAVRHRIDVVKEQLHQLEQKADFFTRHHL
LASVNVDGPTLIAMRRQPDILAAMERLPWLRFELVEHIRLPKDSSFASMC
EFGPLWLDDFGTGMANFSALSEVRYDYIKVALELFVMLRQSAEGRNLFTL
LLQLMNRYCRGVIVEGVETLEEWRDVQRSPAFAAQGYFLSRPVPLISLEE
VILTL
>SC3549 yhjK, putative Diguanylate cyclase/phosphodiesterase
MAMVAAVVMVFVFVFCTVLLFHLVQQNRYNTATQLESIARSVREPLSSAI
LKADLPGAETILESIKPAGVVSRADVVLPNQFQALRKRFIPERPVPVMVT
RLFELPVQISLPVYSLERPANPQPLAYLVLQADSYRMYKFVMSALSTLVT
IYLLLSLILTVAIAWCVNRLIVHPLRKIARELNDIPQQELIGHQLALPRL
HQDDEIGMLVRSYNLNQQLMQRQREEQTDNAMRFPVSELPNKAFLMALLE
QVITRQQTTALIIVTCETLRDTAGVLQETQREILLLTLVEKLKSVLAPRM
VLTQVSGYDFAIIAHGVKEPWHAITLGQQILTIINERLPIQGIQLRPSCS
IGIAMYYGDLTAEELYGRAVSAAFTARRKGKNQIQFFDPAQMEAAQQRLT
EESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPDG
LIERIESCGLMVTVGYWVLEESCRQLAAWQERGVTLPLSVNLSALQLMHP
GMVSELLELLNRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRI
ALDDFGMGYAGLRQLQHMKSLPVDILKIDKMFVDGLPDDHSMVTAIILMA
RSLNLQLIAEGVENEAQRAWLEQAGVNVAQGFLFARPVPADIFEERYLSH
ENSDYKS
>SC4143 yjcC, putative diguanylate cyclase/phosphodiesterase
MQGNRLKMSQSTRRKVLRFLGTIIVVLLPVLLAIWFAHIRAVSETRNQLH
SFAQLVLDKTERVILQADLARDAAEQYQGQACTPAHQQRMLNIIRGRLYI
NELIYAKGQRFLCSTVMTPTSPYFIPRADYKRKPDIAIYYYRDTPFFNGY
KMTYMQQGNYVAVINPLSYSEVMSDDPALAWGMYDTVTNTFFSLSEQAQA
DQLLPLVRRSEPVFQQGERFYTLVKSAKRPVAAIVSTSKQRFYQNLFHQL
TLTLPLGIICSIIILFMWSRSRQAYYSPRRLLQRAITRHQLCLHYQPIID
IRNGTCVGAEALLRWPGYHGPVMSPCEFIPLAEKEGMIEQITDYVVEEVF
NDLGGFLAAHPHLYVSINLSAADFLSSRLIVMIHEKTRQHSVLAQQIKVE
VTERGFIDVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNVDLLK
IDKSFVDTLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKR
GVQYCQGWHFAKALPPQEFIAWLQQTPAPLTIRGQTPYRR
>SC4384 yjiY, putative carbon starvation protein
MDTKKIFKHIPWVILGIIGAFCLSVVALRRGEHVSALWIVVASVSVYLVA
YRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAG
AGPLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLG
EMIKEEMGTVPGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCS
TVPIALFMGIYMRFLRPGRVGEVSVIGIVLLVASIYFGGVIAHDPYWGPA
LTFKDTTITFALIGYAFVSALLPVWLILAPRDYLATFLKIGVIVGLALGI
VILNPELKMPALTQYVDGTGPLWKGALFPFLFITIACGAVSGFHALISSG
TTPKLLACETDARFIGYGAMLMESFVAVMALVAASIIEPGLYFAMNTPPA
GLGITMPNLHEMGGENAPLIMAQLKDVTTHAAATVSSWGFVISPEQILQT
AKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALF
ILTALDAGTRSGRFMLQDLLGNFVPFLKKTDSLVAGIIGTAGCVGLWGYL
LYQGVVDPLGGVKSLWPLFGISNQMLAAVALVLSTVVLIKMQRTKYIWVT
VIPAVWLLICTTWALGLKLFSANPQMEGFFYMANLYKEKIANGTNLTAQQ
IANMNHIVVNNYTNAGLSILFLVVVYSIIFYGFTTWMKVRNSDKRTDKET
PYVPVPEGGVKISSHH
>SC0510 ylaB, putative diguanylate cyclase/phosphodiesterase domain 2
MTTRHLVSLVTGVLILSVLFPIGLSLWLAHRQVEKRFNEELDIFSSRVAL
RTERVSDQAKAALTHIASFKGEPCSSAHLLAMRRVSYSFRYVQEVLYLKN
SIPVCSSLEKESHIPAFPPPMKITRDGYRAWFTAQNDLGIKRYMAALGSD
SYIVMIDPASFIDVIPFGAWPIDVAIIGRERNTVVASSGNLDPAILPLIH
HETPLRLENRGIQCAIHPFPEMGITIVSWAPTAPLERSWYRQAFIWLPAG
IVTGLLAAAFILRILRRLQSPRHRLQDAIDNREINVHYQPIVSLSSGKIV
GAEALARWQQADGTFLSPEIFIALAEQTGLTEPLTRLIIDTVFEDMGSWL
KSHPEQHISINLEASDLASETLPTLLSTLLNRNQISPSQIALELTEREFA
DPKTSAPIVARYRNAGHAIYIDDFGTGYSSLSYLQNLDVDVLKIDKSFVD
ALEYKNVTPHIIEMAKTLKLKMVAEGIETTRQEQWLRQHGVHYGQGWLYS
KPLPATAFILWAEQRL
>SC1646 ynaF, putative universal stress protein
MNRTILVPIDISDSELTQRVISHVEAEAKIDDAKVHFLTVIPSLPYYASL
GLAYSAELPAMDDLKAEAKSQLEAIIKKFNLPADRVQAHVAEGSPKDKIL
EMAKKLPADMVIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR
>SC1821 yoaD, putative diguanylate cyclase/phosphodiesterase
MGEIFISSSSTPRFPTTLAVSRLAFVANAYWAARMQTAQRIINHYRRNRF
IVCTICALVTLILTLSIRFISERNLNHHRTVAFANHAVDALDNVLHPLQV
GRNVLLPLLELPCATAHLPLRKQAARLQTVRSIGLVKEGILYCSSIFGAR
NTPIRQLQPDLPAVGDLLLLSTDQSLLKGSPILIQWYPASADGQDGVMEI
VNIDLLATMLLEPQQPQITSASLTVGKRHLLYGRGVVDTLPELKKDEERY
QLSSRHFPFTISVSGPSAGVLAFKHLPTQLPLAVLLSLLISYIAWLATAS
RMSFSWEINLALAEREFELFCQPLLNARTQQCTGVEILLRWNNPRQGWIS
PDVFIPIAEEHNLIAPLTRYVIAETIRQRHYFPINHQFHIGINVAASHFR
HGVLLKDLNQYWFSAEPVQQLVLELTERDALLDVDYRLMRELHRKGVKLA
IDDFGTGNSSLSWLEKLRPDILKIDKSFTAAIGTDAVNSTVTDIIIALGQ
RLNIELVAEGVKNQTQAQHLRQHGVQMLQGYLYAKPMPISEFPQWLAGSA
PPPTRHNGQIMSAMPHL
>SC2272 yojN, putative sensor/kinase in regulatory system
MSQSDTTVSTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKS
YQIVDITHAIHKRVDTWRYVTWQIYDNIAATTTPSTGEGLQETRLKQDVY
YLEKPRRKTEALIFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNG
QDNSLILISTLPLKDLSSGFKESTIGNIVDSRRAEMLQQANALDERESFS
SLRKLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIPPGMPLDSFRI
EPDATQATGRSSEKEAPDSVTISFNGSKIEISSALNSTGMRLIWQVPFGT
LLLDTLQNILLPLLLNIGLLALALFGYATFRHQPGRSTESTSSNAANNEL
RVLRAINEEIVSLLPLGLLVYDQEGNRTVISNKIADHLLPHLNLQNITSM
AEQHQGVIQATINNELYEIRLFRSQIAPRTQIFIIRDQDREVLVNKKLKQ
AQRLYEKNQQGRAAFMQNISNTLKEPVRQLAVNAAAVTTPESLKLADQAD
VLVRMIDEIQLANMLENDAWKSEATLFSLQDLIDEVVPEVLPAIKRKGLQ
LLINNHLSGNDERWGDHDALRRILLLLIQYAVTTTAMGKITLEVEQDESI
AERLTFRILDTGEGVTLNEIDNLHFPYMNETQGDRYGKANPLTFWLCNQL
ARKLGGHLNIKARETLGTRYTVHVKMLPHDQHTQVEERLLDDVSVMVDVT
SNEVRAIVLRQLENWGATCITPDERQISQEYDLFLTDNPSNLTASGLLLS
DDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQEEIPASPLGGDE
NAELHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAML
NLVPGKQLCETLEHLIREKDAPGIEKYISDIDAYVKSLL
>SC0681 yqiR, putative sigma-54 dependent transcriptional regulator
MNKTKDIAASPLCFVSPYPQLAKAAEALVAQLDYAVTIHQTTLNRILDEL
PLLESRGHQVLISRGGCAEILKKHSKLPVVEIKMSGYDILDALIPFKGQK
GTVGIVGFSSVIKGCARVAEQLNINYKIFTLQGNDKETISCLKQQLASTP
LDCIVGDTVCQDYFSPLGSQFRLLDSSPASITEALEEARSLYLAFRSQLL
ERHHLQLILDQFDKAVITLDDTGALLHYNKYASQLFKVNASGEIYDASFL
KQVLLQERHTLREGKTVSAKVVDTPQGAMVVNLYPVFAARQLSRVVLTMQ
TVSSLQGAEHHVRRQELSRRGLSARYHFDDLLTENPEMLRRLAIIKNYAG
TDATILINGESGTGKEVLAQSIHNASQRVNGPFVAINCGAMAPQILESEL
FGYVAGAFTGASPKGKIGLFELAHHGTIFLDEISELDKPLQTRLLWVLQE
RQIMRLGSDQMIPVDIRVIAATNQTLTKLIADGTFREDLYYRLNVLKVTT
IPLRKRPEDIKAIGLSLLTSFSQHYKRPALTLTPALWQELQRFAWPGNVR
QLSNIIERLVLSIDHSPATLDEGRLLLDDLEEGSRREPNTCHDCQMLAGD
YKTIRLRILRKLLEAERDNKSLVAKRLNVDRTSLTRWIRESA
>SC1868 yreP, conserved hypothetical protein
MGQDSDDWRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFALIILFR
HILISDFDKSISAQTGILPLIDDIMGSIIVFSFLMLLFIYRLPTRFTPLC
LVMLLILSLMWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALL
LFIVPLWLTALLASVRLNQYVNIRFLLVWLTLTAILIYGRFILQRWFDEA
WLRYQENRMLIARLDVMAHQDALTGTANRRSMESFLGDALRQTEPFALIM
LDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPADLVARYGGEEFVV
VLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTAGD
TVTGIIARADEALYRAKQQGRNRWVK