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2024-04-29 14:28:02

Gene list

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COG category: Signal transduction mechanisms
Organism: Phage Gifsy-1

Number of genes found: 174

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Phage Gifsy-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC4441 putative inner membrane proteinchromosome CDS4752001 672 - 0.43006
NA SC3705 putative phosphotransferase system mannitol/fructose-specific IIA domainchromosome CDS3923615 474 - 0.447257
NA SC1628 putative periplasmic binding proteinchromosome CDS1737050 231 + 0.419913
NA SC0390 putative response regulatorchromosome CDS435596 642 + 0.400312
NA SC1276 putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainchromosome CDS1379099 648 + 0.368827
NA SC2274 sensory histidine kinase in two-component regulatory system with RcsB, regulates colanic capsule biosynthesischromosome CDS2385030 2847 - 0.5353
NA SC2596 putative bacteriophage proteinchromosome CDS2761217 1953 - 0.526882
NA SC0105 hypothetical proteinchromosome CDS123054 282 + 0.439716
aceK SC4064 isocitrate dehydrogenase kinase/phosphatase, also has ATPase activitychromosome CDS4338427 1752 + 0.525685
aer SC3163 aerotaxis sensor receptor, senses cellular redox state or proton motive forcechromosome CDS3344822 1521 - 0.554898
apaH SC0083 diadenosine tetraphosphatasechromosome CDS95642 849 - 0.555948
arcA SC4443 response regulator (OmpR family) in two-component regulatory system with ArcB (or CpxA), regulates genes in aerobic pathwayschromosome CDS4753638 717 - 0.523013
arcB SC3266 aerobic respiration control sensor proteinchromosome CDS3445234 2337 - 0.520325
argT SC2356 ABC superfamily (bind_prot), lysine/arginine/ornithine transport proteinchromosome CDS2479922 783 - 0.509579
artI SC0882 ABC superfamily (bind_prot), arginine transport systemchromosome CDS988039 801 - 0.510612
artJ SC4230 putative arginine-binding periplasmic proteinchromosome CDS4530104 720 - 0.495833
artJ SC0879 ABC superfamily (bind_prot), arginine 3rd transport systemchromosome CDS985681 732 - 0.486339
baeR SC2133 response regulator in two-component regulatory system with BaeS (OmpR family)chromosome CDS2237007 723 + 0.544952
baeS SC2132 sensory kinase in two-component regulatoyr system wtih BaeRchromosome CDS2235607 1404 + 0.574786
barA SC2898 sensory histidine kinasechromosome CDS3066226 2757 + 0.525934
basR SC4171 response regulator in two-component regulatory system with BasS (OmpR family)chromosome CDS4468262 669 - 0.533632
basS SC4170 sensory kinase in two-component regulatory system with BasRchromosome CDS4467182 1080 - 0.548148
bglJ SC4400 transcriptional regulator (activator) of bgl operon (LuxR/UhpA family)chromosome CDS4709112 675 + 0.491852
bolA SC0488 morphogene; putative regulator of murein genes (BolA family)chromosome CDS545367 309 + 0.495146
cdaR SC2489 putative regulatory proteinchromosome CDS2622528 1182 - 0.494924
cdaR SC0210 putative inner membrane proteinchromosome CDS242185 1158 + 0.548359
cheA SC1928 sensory histitine protein kinase, transduces signal between chemo-signal receptors and CheB and CheYchromosome CDS2039758 2016 - 0.550099
cheB SC1924 methyl esterase, response regulator for chemotaxis (cheA sensor)chromosome CDS2035270 1050 - 0.559048
cheM SC1926 methyl accepting chemotaxis protein II, aspartate sensor-receptorchromosome CDS2037336 1893 - 0.554147
cheR SC1925 glutamate methyltransferase, response regulator for chemotaxischromosome CDS2036316 867 - 0.527105
cheV SC2314 putative chemotaxis signal transduction proteinchromosome CDS2434922 1002 + 0.51996
cheW SC1927 purine-binding chemotaxis protein; regulationchromosome CDS2039234 504 - 0.525794
cheY SC1923 chemotaxis regulator, transmits chemoreceptor signals to flagelllar motor componentschromosome CDS2034863 390 - 0.510256
cheZ SC1922 chemotactic response; CheY protein phophatasechromosome CDS2034208 567 - 0.585538
citA SC0047 putative transcription regulator, histidine kinase for citratechromosome CDS56048 1659 - 0.47619
citB SC0046 putative transcription regulator sensor for citratechromosome CDS55360 687 - 0.483261
copR SC1046 Copper resistance; transcriptional regulatory proteinchromosome CDS1163061 747 - 0.506024
copS SC1045 Copper resistance; histidine kinasechromosome CDS1161704 1365 - 0.512088
cpxA SC3949 sensory kinase in two-component regulatory system with CpxR, senses misfolded proteins in bacterial envelopechromosome CDS4201419 1374 - 0.574236
cpxP SC3951 periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stresseschromosome CDS4203638 501 + 0.50499
cpxR SC3950 response reguator in two-component regulatory system with CpxA, regulates expression of protein folding and degrading factors (OmpR family)chromosome CDS4202789 699 - 0.543634
creB SC4433 response regulator in two-component regulatory system with CreC (OmpR family)chromosome CDS4742501 690 + 0.581159
creC SC4434 sensory kinase (alternative) in two-component regulatory system with CreB (or alternatively PhoB), senses catabolite repression,chromosome CDS4743190 1425 + 0.579649
crp SC3400 catabolite activator protein (CAP), cyclic AMP receptor protein (CRP family)chromosome CDS3570084 633 + 0.50237
csrA SC2759 Carbon storage regulatorchromosome CDS2925362 186 - 0.510753
cstA SC0631 carbon starvation proteinchromosome CDS703828 2100 + 0.570952
cusS SC0599 Sensor proteinchromosome CDS668790 330 - 0.487879
dcuR SC4181 response regulator in two-component regulatory system with DcuS, regulates anaerobic fumarate respirationchromosome CDS4483711 720 - 0.491667
dcuS SC4182 sensory histidine kinase in two-component retgulatory system with DcuR, senses fumarate/C4-dicarboxylatechromosome CDS4484427 1632 - 0.53125
dksA SC0186 dnaK suppressor proteinchromosome CDS212504 474 - 0.533755
dpiA SC0656 response regulator in two-component regulatory system with DpiB, transcriptional regulation of cit operon (citrate fermentation) genes and of plasmidchromosome CDS732340 549 + 0.537341
dpiB SC0655 sensory histidine kinase in two-component regulatory system with DpiA, regulation of cit operon and plasmid inheritance geneschromosome CDS730578 1662 + 0.518652
ecnR SC4216 putative bacterial regulatory protein, luxR familychromosome CDS4515357 645 - 0.458915
envZ SC3433 sensory histidine kinase in two-component regulatory system with OmpRchromosome CDS3611751 1353 - 0.574279
fhlA SC2792 formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons (EBP family)chromosome CDS2958009 2190 + 0.544749
fimZ SC0588 fimbrial protein Z, putative transcriptional regulator (LuxR/UhpA family)chromosome CDS655946 726 - 0.409091
fliY SC1958 putative periplasmic binding transport proteinchromosome CDS2065655 759 - 0.516469
fnr SC1656 transcriptional regulation of aerobic, anaerobic respiration, osmotic balance (CRP family)chromosome CDS1767447 846 + 0.489362
glnE SC3148 adenylyl transferase for glutamine synthetase, regulates P-II (GlnB) and GlnKchromosome CDS3326115 2844 - 0.571027
glnH SC0825 ABC superfamily (bind_prot), glutamine high-affinity transporterchromosome CDS924857 747 - 0.484605
gltI SC0693 ABC superfamily (bind_prot), glutamate/aspartate transporterchromosome CDS771443 927 - 0.514563
hisJ SC2355 ABC superfamily (bind_prot), histidine transport proteinchromosome CDS2478902 783 - 0.517241
hnr SC1748 putative regulatory proteinchromosome CDS1862064 1014 - 0.506903
hydG SC4055 response regulator in two-component reguatory system with HydH, regulates hydrogenase 3 activity (EBP family)chromosome CDS4323414 1326 + 0.555807
hydH SC4054 sensory kinase in two component regulatory system with HydGchromosome CDS4321744 1665 + 0.539339
kdpD SC0723 sensory kinase in two-component regulatory system wtih KdpE, regulates kdp operon (high-affinity potassium transport system)chromosome CDS808905 2685 - 0.587337
kdpE SC0722 response regulator in two-component regulatory system with KdpD, regulates kdp operon encoding a high-affinity K translocating ATPase (OmpR family)chromosome CDS808231 678 - 0.567847
levR SC3693 putative NtrC family transcriptional regulators, ATPase domainchromosome CDS3910993 2799 - 0.547696
lexA SC4116 SOS response regulator, transcriptional repressor (LexA family)chromosome CDS4393865 609 + 0.545156
luxS SC2752 quorum sensing protein, produces autoinducer-acyl-homoserine lactone-signaling moleculeschromosome CDS2920954 516 - 0.532946
mac SC3079 putative methyl-accepting chemotaxis proteinchromosome CDS3260089 1056 - 0.427083
mcp SC1652 putative methyl-accepting chemotaxis proteinchromosome CDS1764539 1077 - 0.47818
mcp1 SC3094 putative methyl-accepting chemotaxis proteinchromosome CDS3273782 1644 - 0.569343
mcp2 SC3162 putative methyl-accepting chemotaxis proteinchromosome CDS3342869 1566 - 0.506386
narL SC1761 response regulator in two-component regulatory system with NarX (or NarQ), regulates anaerobic respiration and fermentation (LuxR/UhpA familiy)chromosome CDS1879051 651 + 0.534562
narP SC2251 response regulator in two-component regulatory system with NarQ (or NarX)chromosome CDS2360986 648 + 0.526235
narX SC1760 sensory histidine kinase in two component regulatory system with NarL, senses nitrate/nitrite, regulates anaerobic respiration and fermentationchromosome CDS1877262 1797 + 0.538119
ntrB SC3898 sensory kinase (phosphatase) in two-component regulatory system with GlnG (nitrogen regulator II, NRII)chromosome CDS4148351 1050 - 0.569524
ntrC SC3897 response regulator in two-component regulatory system with GlnL (EBP family)chromosome CDS4146933 1467 - 0.564417
ompR SC3434 Transcriptional regulatory protein ompRchromosome CDS3613100 735 - 0.557823
pgtA SC2397 Phosphoglycerate transport: activatorchromosome CDS2521671 1089 - 0.525253
pgtB SC2398 Phosphoglycerate transport: protein for signal transmissionchromosome CDS2522908 2007 - 0.538117
phoB SC0438 response regulator in two-component regulatory system with PhoR (or CreC), regulates pho regulon (OmpR family)chromosome CDS495287 690 + 0.547826
phoH SC1077 PhoB-dependent, ATP-binding pho regulon componentchromosome CDS1193614 855 + 0.504094
phoL SC0697 putative phosphate starvation-inducible protein, ATP-bindingchromosome CDS775770 1086 - 0.535912
phoP SC1182 response regulator in two-component regulatory system with PhoQ, transcribes genes expressed under low Mg+ concentration (OmpR family)chromosome CDS1300053 675 - 0.511111
phoQ SC1181 sensory kinase protein in two-component regulatory system with PhoP, ligand is Mg+chromosome CDS1298590 1464 - 0.514344
phoR SC0439 sensory kinase in two-component regulatory system with PhoB, regulates pho regulonchromosome CDS496046 1296 + 0.536265
pphB SC2836 serine/threonine specific protein phosphatase 2chromosome CDS3000672 657 + 0.415525
proQ SC1842 activator of proPchromosome CDS1959154 687 - 0.537118
prpA SC1849 serine/threonine protein phosphatasechromosome CDS1966640 669 - 0.524664
prpR SC0408 regulator for prp operon (EBP family)chromosome CDS460629 1626 - 0.555351
pspA SC1683 phage shock protein; negative regulatory gene for the psp opreonchromosome CDS1794880 669 - 0.5142
pspC SC1681 phage shock protein; regulatory gene, activates expression of psp operon with PspBchromosome CDS1794237 360 - 0.519444
pspF SC1684 transcription activatorchromosome CDS1795704 996 + 0.542169
ptkA SC3199 Sugar specific-family of transport protein, galactitol-specific enzyme IIA of phosphotransferase systemchromosome CDS3384142 465 + 0.541936
ptsN SC3260 sugar specific PTS family, enzyme IIA, also regulates N metabolismchromosome CDS3441013 492 + 0.530488
ptsP SC2942 General PTS system, enzyme I, transcriptional regulator with NPR and NTR proteinschromosome CDS3119602 2247 - 0.570093
ptxA SC4259 putative PTS enzyme IIsga subunitchromosome CDS4561653 465 + 0.548387
ptxA SC2345 putative phosphotransferase systemchromosome CDS2471098 444 - 0.495495
rcsA SC1987 positive transcriptional regulator of capsular/exo-polysaccharide synthesis (LuxR/UhpA family)chromosome CDS2089188 624 + 0.387821
rcsB SC2273 response regulator (positive) in two-component regulatory system with RcsC (LuxR/UhpA familiy)chromosome CDS2384233 696 + 0.49569
relA SC2896 (p)ppGpp synthetase I (GTP pyrophosphokinase)chromosome CDS3062588 2235 - 0.557047
rocR SC2363 putative regulatory proteinchromosome CDS2487283 1428 + 0.520308
rseA SC2644 anti sigma E (sigma 24) factor, negative regulatorchromosome CDS2795970 717 - 0.529986
rseB SC2643 anti sigma E (sigma 24) factor, negative regulatorchromosome CDS2795014 957 - 0.549634
rseC SC2642 regulator of sigma E (sigma 24) factorchromosome CDS2794538 480 - 0.585417
rstA SC1493 response regulator in two-component regulatory system with RstB (OmpR family)chromosome CDS1589448 732 - 0.532787
rstB SC1488 sensory histidine kinase in two-component regulatory system with RstAchromosome CDS1584563 1302 - 0.540707
rtcR SC3453 sigma N (sigma 54)-dependent regulator of rtcBA expression (EBP familiy)chromosome CDS3638168 1584 + 0.598485
rtn SC2231 putative membrane protein involved in resistance to lambda and N4 phageschromosome CDS2338406 1557 + 0.519589
rtn SC0386 putative Diguanylate cyclase/phosphodiesterase domain 1chromosome CDS431649 1575 + 0.485079
sgcA SC1612 putative Sugar Specific PTS Enzyme IIchromosome CDS1718627 438 + 0.573059
sipB SC2817 cell invasion proteinchromosome CDS2982642 1782 - 0.517957
sirA SC1950 putative response regulator (LuxR/UhpA familiy)chromosome CDS2060711 657 - 0.51446
sixA SC2389 phosphohistidine phosphatasechromosome CDS2511821 486 - 0.547325
spoT SC3666 (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolasechromosome CDS3876370 2112 + 0.535038
sptP SC2810 protein tyrosine phosphatechromosome CDS2975599 1632 - 0.443627
spy SC1329 periplasmic protein related to spheroblast formationchromosome CDS1427220 486 + 0.5
sseB SC1419 Secretion system effector SseBchromosome CDS1521622 591 + 0.434856
ssrA SC1413 Secretion system regulator:Sensor componentchromosome CDS1514579 2763 - 0.423453
ssrB SC1412 Secretion system regulator: transcriptonal activator, homologous with degU/uvrY/bvgAchromosome CDS1513910 639 - 0.397496
tcp SC3506 methyl-accepting transmembrane citrate/phenol chemoreceptorchromosome CDS3698956 1644 + 0.556569
tctD SC2716 tricarboxylic transport: regulatory proteinchromosome CDS2888444 675 - 0.551111
tctE SC2715 tricarboxylic transport: regulatory proteinchromosome CDS2887042 1467 - 0.565099
torR SC3742 response regulator in multi-component regualtory system wtih TorS (sensory kinase) and TorT (periplasmic sensor), regulates tor operon (TorR family)chromosome CDS3963674 693 + 0.559885
torS SC3743 sensory kinase in multi-component regulatory system with TorR (regulator) and TorT (periplasmic sensor), regulates tor operonchromosome CDS3965459 2736 + 0.543129
trg SC1621 methyl-accepting chemotaxis protein III, ribose and galactose sensor receptorchromosome CDS1729036 1626 - 0.539975
tsr SC4385 methyl-accepting chemotaxis protein I, serine sensor receptorchromosome CDS4692472 1662 + 0.552347
ttrR SC1408 Tetrathionate reductase complex: response regulatorchromosome CDS1510846 621 + 0.552335
ttrS SC1407 Tetrathionate reductase complex: sensory transduction histidine kinasechromosome CDS1509093 1779 + 0.568297
typA SC3900 GTP-binding elongation factor family proteinchromosome CDS4151460 1824 + 0.538377
uhpA SC3710 response regulator (repressor) in two-component regulatory system wtih UhpB, regulates uhpT operon (LuxR/UhpA family)chromosome CDS3930220 654 - 0.571865
uhpB SC3709 sensory histidine kinase in two-component regulatory sytem with UhpAchromosome CDS3928719 1542 - 0.609598
umuD SC2001 error-prone repair: SOS-response transcriptional repressors (LexA homologs, RecA-mediated autopeptidases)chromosome CDS2102918 420 - 0.495238
uspA SC3520 universal stress protein Achromosome CDS3714983 435 + 0.512644
virG SC0308 similar to Shigella VirG proteinchromosome CDS354962 408 - 0.470588
wzb SC2118 putative protein-tyrosine-phosphatase in colanic acid exportchromosome CDS2213530 423 - 0.593381
yaiC SC0426 putative diguanylate cyclase/phosphodiesterase domain 1chromosome CDS482623 1113 + 0.552561
ybdQ SC0645 putative Universal stress protein UspA and related nucleotide-binding proteinchromosome CDS719921 429 - 0.515152
ybiI SC0821 putative DnaK suppressor proteinchromosome CDS919599 267 - 0.520599
yciR SC1697 putative PAS/PAC domain; diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2chromosome CDS1809673 1983 + 0.505799
ydaA SC1657 putative universal stress proteinchromosome CDS1768443 948 + 0.517932
ydiV SC1690 conserved hypothetical proteinchromosome CDS1802115 708 - 0.483051
ydiV SC1363 putative Diguanylate cyclase/phosphodiesterase domain 1chromosome CDS1458904 714 + 0.462185
yeaG SC1297 putative Ser protein kinasechromosome CDS1393451 1965 - 0.503817
yeaJ SC1295 putative Methyl-accepting chemotaxis protein; Diguanylate cyclase/phosphodiesterase domain 1chromosome CDS1389908 1494 - 0.451138
yebR SC1843 putative GAF domain-containing proteinchromosome CDS1959938 585 - 0.507692
yecG SC1934 putative universal stress proteinchromosome CDS2045433 429 + 0.519814
yedQ SC1991 putative inner membrane proteinchromosome CDS2091504 1713 - 0.535318
yegE SC2126 putative PAS/PAC domain; Diguanylate cyclase/phosphodiesterase domain 1, Diguanylate cyclase/phosphodiesterase domain 2,chromosome CDS2221004 2991 + 0.540288
yehT SC2174 putative regulatorchromosome CDS2276259 720 - 0.508333
yehU SC2175 paral putative sensor/kinase in regulatory systemchromosome CDS2276975 1641 - 0.529555
yfeA SC2413 putative Diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2chromosome CDS2542285 2190 - 0.506393
yfgF SC2500 putative diguanylate cyclasechromosome CDS2635880 2214 - 0.476965
yfhA SC2557 putative transcriptional regulator of two-component regulator protein (EBP familiiy)chromosome CDS2724681 1338 - 0.556054
yfhK SC2559 putative sensory kinase in regulatory systemchromosome CDS2726781 1443 - 0.546085
ygaA SC2772 putative regulator (EBP family)chromosome CDS2937786 1515 - 0.59868
ygiM SC3150 putative SH3 domain proteinchromosome CDS3330619 615 + 0.504065
ygiX SC3121 putative transcriptional regulator (OmpR family)chromosome CDS3301407 813 + 0.527675
ygiY SC3122 putative sensory histidine kinase in regulatory systemchromosome CDS3302216 1350 + 0.563704
yhcK SC4403 putative diguanylate cyclase/phosphodiesterase domain 1chromosome CDS4711355 1065 - 0.49108
yhdA SC3313 putative diguanylate cyclasechromosome CDS3499602 1941 - 0.535806
yhjB SC3540 putative transcriptional regulator (LuxR/UhpA familiy)chromosome CDS3738031 558 - 0.492832
yhjH SC3545 putative Diguanylate cyclase/phosphodiesterase domain 3chromosome CDS3746485 768 - 0.533854
yhjK SC3549 putative Diguanylate cyclase/phosphodiesterasechromosome CDS3751615 1974 - 0.542553
yjcC SC4143 putative diguanylate cyclase/phosphodiesterasechromosome CDS4436977 1623 + 0.47443
yjiY SC4384 putative carbon starvation proteinchromosome CDS4689955 2151 - 0.576476
ylaB SC0510 putative diguanylate cyclase/phosphodiesterase domain 2chromosome CDS568945 1551 - 0.522244
ynaF SC1646 putative universal stress proteinchromosome CDS1759314 435 + 0.475862
yoaD SC1821 putative diguanylate cyclase/phosphodiesterasechromosome CDS1939952 1704 + 0.535211
yojN SC2272 putative sensor/kinase in regulatory systemchromosome CDS2381592 2670 + 0.513483
yqiR SC0681 putative sigma-54 dependent transcriptional regulatorchromosome CDS757089 1929 + 0.499222
yreP SC1868 conserved hypothetical proteinchromosome CDS1980662 1131 + 0.50221