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# Chlamydophila caviae GPIC

>CCA00964 regulatory protein, putative
MIPFTKTIGYRLWLACVAAILIPLGINIVLLNFRQYHTTVSSVAAAFKEN
ASFKADTLMQIVPLNADVLALFSEVLDLDEGVPSVPNVELSNEMQRIFSS
TYDEISLIKLQPNGEKIVVASSQPERLGENYKNKIDIPSHLPLAATFKQS
SDKHEVFSVMQVNIFDNDTHELLGILYTTHNIEKFLKDILINTQAYFTVK
TAILSKDGVILKASDPDLDLRAIYPHVTEKQFCDTFLDIDSCPKGIALNP
LSLTPLPIEPNFFSFKNGNQEIWSYLANVPHMDLSVLSYGTKTELFSTLW
KRTLIYFAYFLCVVLGSIIAYLAAKRLSLPIRKLATVIIQTRDNIRDPYV
DDSLGFEVNRLGHIFNAMVQSLDQQQTLAEKNYAIKESAQNALRLGEQAQ
QRLLPNTLPNYPHVELAKAYIPAITVGGDFFDAFIVGEGDKATLFLIVAD
ASGKGVHACGYSLFLKNMLRTFLSQTPSIKEAIEQTSLLFYKNTANSGMF
VTLCVYSYNYKTGSVEFYSCGHNPACYLSPNGEVSLLYHQGMALGFLPNI
PDIPTTSFQPAPGSLIILYSDGITEAHNKAFEMFGEERLKSAVKTLVGKS
AEDAMHSLMLSVKTFVGNSHQHDDITLLILKIADS
>CCA00618 protein kinase, putative
MEGEQDIGVEFLGDYKILCYLRKGLWCQDILAEHRFIKKRYILKLLCSEL
SSSEAFMTAFHEAIIKLATIRHPGIISIENVSQAEGQYFLVTEEKEVPTL
SLAQYLSSCSQGLSELEAKDLICQLAEILDYAHANRLIHGGLSLDSVHID
LTGQSPKVFLPELGFSFLLKDQYTQSLLRDSSEKSSFDKLKQILLFQAPE
TALGTVAEDVYAFGVIVYFLLFRQLPQGAFPLPSEAFPEYVYDWDRLIQS
CLSYAVEKRPKKLAPLLVKKTLGEQFLAAKIQCSEEDLREIEEEPQVPSV
ANILQKVEDKIIEETSDHLEFVLVEAKSIDEAMNTSVDSKEEVVAEDESY
SNALQSLLIREPVVSRYVEEEKEEVKPQPLFTEMVFIEGGKFLRGSREGQ
RDEHPVHEIFLHSFFLDIHPVTNEQFVRYLECSGSEQDKYYNELIRLKDS
RIQRRSGKLVIEPGYAKHPVVGVTWYGASGYASWVGKRLPTEAEWEIASC
GGVTQLRYPCGEEIDKSQANFFSSDTTPVMSYPANPYGLYDMAGNVYEWC
EDWYGYDFYEISAQESHAPQGPAQGVYRVLRGGCWKSLKDDLRCAHRHRN
NPGAVNSTYGFRCAKGVK
>CCA00030 FHA domain protein
MGARLIIDKGPLSGFVLVLEEGTSWSIGRDDATSDIQLEDPKIGDTQVVI
SLEAGVYSVTNLDTAYPVIVNGKEIQEITTLQNGDILTFGSNQYSFFTNE
FDPEDVVYDFDLSSKNTTNVTPEPADSKKKTKKEKKSSQDSGKKSSSKQQ
DSSNTSPTDKDKELAEAFLASAKTGKKALDQKVDIDTLPDSGIKKKKSPL
GDIKNTETQHTTMEENGALPNQNQQPLPDSDPVKQEQSQEGGDRPKEGEP
VKESPASKEEVSPQGTAPDEKRDVEDALDDKEASEDVEDKKETSEEVADD
KEAAEETPENKEETEEKSEEADEKAEEENEQEDKKAEKAEILSPFNVQDL
FRFDQGIFPAEIDDIVQKNVSVDLSQPSRFLLKVLAGANIGAEFHLDTGK
SYVLGSDPASADIVFNDLSVSGRHAKIIVSNDGSIMVEDLGSKNGVIIEG
KKIENSSTLSSNQVVALGTTLFLLIDHLAPADTIVASFAPEDYGLFGRPQ
DAEEIAQQAAQEEEEKRKRATLPTGSFILTLFIGGLAILFGIGTASLFHT
KEVIPIENMDFQEDIERVVNAFPTVRYTFNKNNGQLFLIGHVKNSIDKSE
LLYKMDALSFIKSIDDNVIDDEAVWQEMNILLSKRTEFKGVSMHSPEPGQ
FVITGYLKTEEQSVCLSDYLNVHFNYLSLLENKVIIESQMLKAIAGQLLQ
SGFANIHVAFVNGEVVLTGYVNNADGEKFRSVVQEISSIPGVRLVKNFVV
LLPVEEGIIDLNLRYPSRYRVTGYSKYGDVSINVVVNGRILTRGDVIDGM
TVTSIQPNCIFLEKEGLKYKIEYNK
>CCA00755 conserved hypothetical protein
MTIQPISTASTASIASKETAQAAQLPPLDPLNTPPIGALLFSIYELLLQA
IEIRQQTVLTQSQQLNDNTNIQQQLNQATNQIKFAVVSAGGKEDEITRVQ
NQNQNYSAQRSNIQDELVTARQNGQIILSHASTNINIIQQLASQDSSFLK
TTSAIGSTVNQLNKPPS
>CCA00157 sensor histidine kinase
MSNNNCKSCSSTQELIEIKSRITQSYKEADTILTSIPDGIILLSEIGNVL
ICNSQAREILGIPEELEMLQKPFTDFFPETFFGFSINEALQSLSSPKTLR
LTLSKNDQDRDAEIFIRRNSVNGYLFLLIRDRSEYKQLENAIERYKNIAE
LGKMTATLAHEIRNPLSGIAGFASLLKEELSSPRHQRMLSSIIDGTRSLN
SLVSSMLEYTKSQPLDLKTIDLQEFFSSLIPLLSITFPFCKFERETATPI
VRAIDPDRMNSVVWNLVKNAAEATESPMTVTLHASGDISVTNPGQLSQEI
FDKLFIPFFTTKAQGNGLGLAEALKIMRLHGGDVHVENANARITFTLKIP
QP
>CCA00965 conserved hypothetical protein
MKQTFTKRILLFLFLVIPIPLVLNLVVLSLFSFSAAKNNLMENLHTHVTN
FSLEFEKKLTIHKIFLKRLANTLALKAYASSAEDFYSQAYNEMFALSDTD
FSLCLIPLIDGNIKTKNPHDPFIHYLKSHPEIKKKLSMSSGKACIITISS
DTYQNYPKNYLVITEDIEVWNAPTSAGLLVSFYPMDFLQKDLFKSLHLKN
EAICLLNKYGEVLFASDPKFSSEVFSVDIPDLPKITARKQALAVTTAPKI
LREHNLISIKIKNKSYLGIVLNKLPIQGTYTLSIIPLSWFINKAIHLPLN
VIFFYSLAFLFMGWVLTKINKRLNQPIQELTTCMEAAWRGNHNIRYEPQP
YGYEINELGNIFNCTLLLLLNSREKAEIEYASGDQLQKELAILASLQQTL
LSPTFPEFPNISFISKHLQGIQLSGHFYGWKTSFPEQTLIGVIGLAGDIG
LPSYLYALSARSLFLAYANLSSSLEKISSDTFDAFGKTTEGDEATVSMTF
IRYDSIDSTLSILSVGETPPIAFLKRQETFSRLASPTKHKIEPGDILVCI
TGNYELTEYLMRLPIEELIKDPLAPLNSENFIETLTEMLNKETQSQIDGT
LSFLSFS
>CCA00666 phoH family protein
MKKTMVIDTSVFIYDPEALSSFEDKRIIIPFTVIEELEAFAKDRDESAKN
ASRALSNIRLLLERSTNPSEGIFLPNGSELRIEVSSIANLTNDEKRRKLL
TLELLQVIAQREPMIFVTKSLGRRVRAEALGIEARDYENKRFSFRSLYRG
YRELSVSASDVESFYTNGYLDIPLDIAPSPNEYFFISGGENYFALGRYHE
RERRIVSLKPLPDKIWGIKPLNTEQKCALDLLLLDDIKLVTLMGQAGSGK
TILALAAAMHQVFDKGNYNKLLVSRPIIPMGKDIGFLPGVKEEKLLHWMQ
PIYDNMEFLFNISGMGDFSEVLQSLMDAKKLEMEALTYIRGRSLPKVFMI
IDEAQNLTPHEIKTIISRAGKGTKIVLTGDPTQIDSPYFDENSNGLTYLV
GKFHHVSLYGHMFMTRTERSELAAAAATIL
>CCA00859 anti-anti-sigma factor
MDWLTKQYGDVLVVYLEGALDAVSVPRSETFLNKKVEEGKHKIVLNFQHV
TYMSSAGIRLLFSLSKSLQSRQGLLCICCVQDLVADVIRMAGADQLFPVC
QSEQECFTKF
>CCA00668 conserved hypothetical protein
MRTLSISMLLFTIGSGISSASLLAAPSTSTTSVAQMDKSSFAPFTGEIKG
NRVRLRLAPHVDSSIIKELSKGDYIAVIGESKDYYIVAAPEGLKGYVFRT
FVLDNVIEGEQVNVRLEPSTSAPVLARLSRGTQIEATPIQQQGKWLEIVL
PSQCAFYVAKNFVSQKGSIDLYKQREGQKKIALDLLDSAVQFAQDELKKG
LDLVDLEAIYKKINLVQSEEFNDVPGLQPLIQKALEEIQDTYLAKSLANQ
DKAIGKQQASSSSDTLSTPERPATTGSLLSRHIRKQTVIKTSPKTQGRES
LEYSLFKIWASMQPQEHAKKLTQDAFYEEEKKKKKTFVGELELYPHVVKN
NPGDYLLKDKENTLAFVYATKIDLEKWVGKRVSVECLPRPNNHFAFPAYY
IIDIKEVVS
>CCA00349 DNA binding protein/PTS system, IIA component
MDLKLDELASLLDVSENTVRRWLDEGAIPSYSMNNEHRFNREEIEDWILH
NQALIGLEQDEKQDSEFRDLSLKYSLYKAIYRGGIIRDVTVNNKAEALQY
ASSYIAEKFNLDASVLFEMLSHRESLMSTGIGEGIALPHAKDFLINAYYD
VVVPMFLSTSIDFGALDGKPVSVLFFLFASQDKSHLNLINKIVHLGMSLE
ARSFLTSYPEKEQLLAYIKNWESQIH
>CCA00677 serine/threonine-protein kinase
MQRYDIIRMIGKGGMGEVYLAYDPVCSRKVALKRIREDLSDNELLKKRFL
REAKIAADLVHPGVVPVFTICSDSDPVYYTMPYIEGYTLKSLLKSVWQCD
SLPKDLAEQTSVATFLSIFHKICSTVEYVHSRGILHRDLKPDNILLGLFS
EVVILDWGAALSKEMEEDFLSDIDVRIPGSLFSNMTIPGKIVGTPDYMAP
ERLRGTPASESTDIYALGVILYQMLTLSFPYRKKKGQKISLRHQISFPEE
IAPHREIPPFLSQVVMRALAADPRERYRSVSALKADIEQHLQGSPEWTPK
IVLHTQDRECWKFHEPILLSKYFPMLEVSPALWYSLAISKIESFSEVRLE
YTLLRKGLEEGFGILLPPSEGVDHGDFYHGYGFWLHIKENILSVSLVKNG
LEIQKTSRHIDGNKEKFFIAFEKQNHRLSLIIDNIVWTIHMDYLPARGGR
IGVIIQDVADVCGNIVVLESSGSLQVSCLAVPDAFLNEKLYERAITFYRR
IVESFPGRKEGYEAQFRIGIALLEKASENSDSEGFIQALEEFSTLHNSVA
APLEYLGKALVYQRLGEYNEEVKSLLLALKRYCQRPEISRVRDHVVYRLH
EALYSNHRISLVFMLLALHVAPESINASEEEHFLQNLHGKIQDTLFCNLD
ISPVDFRSSKMELLLSYWSGFTPFLLGLFQRSWDLKDYRALADIFYTAAD
LGNKEFIEEYSGILRENIRTTTFSKEIVEILPDQLLCFLSGLEALTLQES
IEKVFDGIENLDPVLILYLFDLFAKDALIHGRGEEILKAIALVEKYISPQ
QRYRYLLPYEVLSYLWMKDANKVYDLLSSYDESSWIDDSSHAFVLYGYWL
ALAEDSSLAYLHLSGCREDSVFPRALIGVFCSPLGICEEQLSYQERRQLL
LQKFIFFHCLGNSEERDKCRTAYDSKERSL
>CCA00795 hypothetical protein
MDGVSNYTGTNVNRSPVCFTVHGPQGHRVVNITAMALSSIIFGAQIAVRV
ASHAKLGSLHVVFVTLTIIVSILLVCVAVYNLFHLCTSVREHQDEKESLD
RRVRNLEMVEQELNRQLQAQRLELDCLGEEIILQINRAEHSESKFGENLH
RFAADKADLEQQLQLAREEITNLSQELESRLEAASMEIEPPYSDEEMDED
ADWFEANNILGSPTDQQNVAYMVMDEGNADDEASTSSERESPR
>CCA00915 conserved hypothetical protein
MTVQPSYITFNRNVTAALLGDQVDMTMPFSSSVFLFQELDQKAKGLKYAL
GLLQEAETKLPVAQISSEFVDAAFKNIPEEKIAFPNVDYDSMKVDEILAN
PNLAAAKLYIEGLERSFDDWLKDIDQGGIFNPTEAEKTLVQEYRIRLSTL
KQAFTEGNPTDAQYTSLYGLAKEFVGTIEKLEGKDAPPKSKVINFWQNMM
VVYNAMISLSYPVSEQLNIKIAECSLNIEEANKVIELIRQFSSSLKDLLN
PVWDISSTATNLTGSGYNAMQGGMTRTYIVLAGVYRMLMDKYSSNAADTM
PTEVKAGVTTFINAMGGLKMGERATLPSFLSLLYSYLVCAGQYGEKSSSA
QADYKKVLQEELSYWDERGNSSFNVADVPLKTFANSPTTSYEGISLFYNG
SQTNLNPEFFQKCVELMTKQPSKVMSRSDYQKVIDGMNNGIKQIQAQITK
WTEESAKLMAQKDSMDPTTLNYFESMKEGKKTFVDTSPIQMVYSSLLLDK
YLPNQQHVLETLGVQMTFSNKAAKYMNQIISQVTNFQTADVYYSLAIYLR
QMNLQALTDALGKAQSVLDKEKVRCKSDIERCLRTKTELKKILDNIKRDA
ELTSSQQRELRQTISGYEFQFEALLRNLGNLYIFLNSMEFTPVEKPDEVD
EAFDIQVNKQKSDNWPRFLSAFESFVIEGGENGIIPGGEQQILQSLEATQ
QNFTTFNQNQQLALQLESSAIQQEWTMVSAALALMNQIFAKLTRRFK
>CCA00136 periplasmic amino acid-binding protein, putative
MKIKNSSKLYFLALLCFLPLVFLGCSREKKELLVGRDTTWFPKQFGIYTA
NINGFLNDLVSEINYRENLNINIVNQDWIHLFENLDDQKTAGALTSIAPT
AEMLDHYQFSEPILLTGPVLVVSENSPYKSIQDLRGKLIGVYKFDSSVLV
GQDIPDAVLSPYQHVPIALEALSSGCYDALLAPVIEVTALIDTAYKGRLK
IISQPLNQDGLRLVVLRGEKNSLLEGFNMGLVKSMRSGKYQTIKQQYRLP
>CCA00069 rsbW protein, putative
MFNRYIMTSSDGEAVFPALLSELHNMLDFVKETGQLNTFPKEKLLKLELA
CEELLVNIISYAYQEAPSPGKIIICCDGDKEALKVTIKDNGPSFNPLTAS
IDIQDQLPLDERKLGGLGIFLAKNSVDEFQYERHGDSNIVHLKIHNSGTS
LD
>CCA00155 sigma-54 dependent response regulator
MNIERVLIIDDEPLLRDFLSELLLSRGFSPCTADNVKQGCQKIRSEKYDL
IISDMNMPDGSGLDIIKVAKAYAPQTPVLVITAYGTIENAVKAMHQGAFN
YLTKPFSSEALFAFIAKAEELQNLVNEHLLLKSQISSESHPLIAESPSMK
DLLSKARKAADSSANIFIHGESGCGKEVLSFFIHKNSPRACQPYIKVNCA
AIPETLLESEFFGHEKGAFTGATAKKAGRFELAHTGTLLLDEITEVPINL
QAKLLRAIQEKEFEHLGGTKTLSVDVRILATSNRNLKEAVDQKIFRQDLF
YRLNVIPLYLPPLRERKEDILPLAQYFLEKFCRLNNKPIKTLSESARSAL
LDYSWPGNIRELSNVLERVVILESPTYLTDTMLALC
>CCA00488 cyclic nucleotide-binding protein
MNLIDRAFLLKKNPIFSSLDMDVLLAISDKTEIMIFKPGVKIFSKEEPSF
SLYIIIEGYVKITDNNSSLSITISSQDCFGEESLFSNKLREYNAEAITQV
RTLILSKGQFLSIVEECPSVALSLLELYAKQITFRHPSS
>CCA00211 transcriptional regulator, putative
MPLSEDEIANFKQRLLEMKYKLSHTLEGNAQEVKKPNEATGYSQHQADQG
TDTFDRTISLEVTTKEYELLRQINRALEKIEESSYGICDVSGEEIPLARL
MAIPYATMTVKAQSEFEKGLLYGN
>CCA00015 conserved hypothetical protein
MVNPVGPIDESKNIAPADLSTLGMQASAANRSSEAQSITGIAGKSGSSQP
SVETVGRLSFLSSARKSLASLFDKISSFFSGKTTPQTFDEAKTQAESAKT
ALQSATTYDQFKTALQQLQDAVKQMEQLATTDAEKATVATWKTALEAQKS
TLDTLNQLGAILTENQKLLEAIKTTSSMDQIMGAAGQVETNKTTAEELIK
QLKEAGVSYPVIDDLEKQITTSGTQVTELADAISEAYAAGKNSTAAVGQA
QANNSPANIEASKQTIANAQKVIEDALKLAPDSPILKAALKEQQQAAKDI
LNVKPSGGSDVPIGGPGAPGSVGTSQNRGATLGEVRVSMLLTDVDNETAA
IIMQGFRNMIDNFHDQNSDFTAPLEEIMNQVTDLSTQINPADAEATAQLQ
EIQQTIQDALQGTAGQDGMINALGAITTAASISTGAPIASANQGGSAVKQ
LYKTGSTAASSKSYADSLSAGYGAYQSLNDVYSRSSASNREVLDRTSTPA
LTQTVSRTETRPRDNDNAAQRFARTIAANSNTLGDVYASVGVLQTLLGVL
QNNPQANEEEIKQKLTSEVTKAPQSGYPHVQLSNDSTKKFIAQLENEFVQ
GSKRLAEAKEAAFEKQPLFIQQVLVNVASLFSGYLQ
>CCA00399 serine/threonine protein phosphatase, putative
MQSTVDFDYFGLSDIGMVRSKNEDFWQVNLSSRAVAIADGMGGCLGGDVA
SHEAIFSLMELIDARQSQLEEFQDDQYREMLTIILSEVNGLIYEHGLMES
RLQGMGTTLSFMQFLRDKAWLLHVGDSRIYRLRGEELSCLTEDHSLANQL
KNRYGLSKQSDKVYPYRHILTNVLGSRPHVTPDIRDISYEKEDLFVFCSD
GLTNMVSDVDIRDTLLQTATLEESGNLLISLANSRGGSDNVTVVLVRIQ
>CCA00262 artJ, amino acid ABC transporter, periplasmic amino acid-binding protein
MKQFTFYLRTLLCLLCLFSAGCTSSSNNRDKLWIVGTNATYPPFEFIDEN
GKVVGFDIDLAEAISKKLDKQLKVTEFSFDALILNLKKHRIDAILAGMSI
TRSRQKEIAMIPYHGEGVCQLTVISKQPLSKEDILPLSKHSSVAVQTGTF
HEDYLLSLSGVKVRSFDSTLEVLMEVGSKKSPVAVLEPSVARVVLKEFPD
LYTTTIDLPEDWWVLGCGLGIAKDRPEHLEEVQKALDELQAEGVVRELEK
KWGLDQKKF
>CCA00039 pkn5, serine/threonine-protein kinase
MDCQSEMLSHNQVIGAYHIKKLLSKKEGSTVYQGVHPDTLQPAAIKVLAT
PLVTDTPRVHNFLKEARIIEQISHPNIVKLYQYGQCREGLYIAMEYIQGV
SLRHYILSQLIPLSRAIDIILHIAQAIEYLHSRGILHRDIKPENILITSQ
GNIKLIDFGLAISSIDKDARPLYLGTPSYMSPEQRQGDKISELSEIYSLG
LIAYELILGNLALGKVVLSLIPDRVSKILAKALQPSPTDRYASMKEFIID
LHRYRHGEDLQKDLRNKDHTAMVNDQLYHQRFWLSPLEIVVPEYLAVSIH
EHGYPTHPHVYYEAYMSGDTFRLWFCYSLSGNPTLVLTVMKSFVSQWGHE
ENIRSTIRKMHSELMRINVPINGKGISLFCVTIPKEKKELSWIACGKTSF
RLKKQGKVPEIFTTSSAGLGKISSLQIQETKVAWEIGDGAVLHTLQADDS
MSSLHSPLFTELKDRGQTAIFCPIESVRYGIEENHDGNLCPSTLISLKRI
R
>CCA00348 ptsN_1, PTS system,IIA component
MPFYCESQPDFSLFSLLSPNLIMFLNKNSREEILQDLTDLASAAGLLENK
EEFFQALVTRENIMSTGIGMGVAIPHGKLRSCSDFFIAIGIHSQGILWDA
IDGALVRLVFLIGGPDNAQAEYLKLLSTLTLSLRDESRRQKLLQVTTIEE
VMNVFLGM
>CCA00233 rsbV_1, anti-anti-sigma factor
MNNIQKEEHGTTAVLHLQGKLDGISSPEVQENISQSLSSGIKNIVLDCTN
LDYMSSAGIRVLLQSYHQVGKHSGKIVLTCVPKTVEQTLYVTGFLSYFKM
FNSVQEALQALSKDED
>CCA01007 tctD, transcriptional regulator
MLTDKIILFVTEDSNISLQLKEFAQNVEYKIIVASALTSTSEADLIFCEY
LLLPEDMFSNKIPSETDLVVLFDAFEEEAVVKILNNGASGYLLRPITVKV
IDAVIRAFLRNHRHFEHAIPESISFGDRTFHLLSLSIDSPLGTVHLTPSE
AGILKKLLMNRGQLCLRKHLLDEIKGGSKEIIARNVDVHIASLRKKLGAY
GSKISTIRGVGYLFSENDNLTNSPSSEPTATHP