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Gene list

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COG category: Signal transduction mechanisms
Organism: Frankia sp. CcI3, CcI3

Number of genes found: 215

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Frankia sp. CcI3, CcI3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Francci3_0044 serine/threonine protein kinasechromosome CDS53428 2592 - 0.706019
NA Francci3_1643 serine/threonine protein kinasechromosome CDS1975832 1605 + 0.743302
NA Francci3_3447 putative signal transduction histidine kinasechromosome CDS4099095 2685 - 0.729236
NA Francci3_4027 transcriptional regulator, LuxR familychromosome CDS4814233 828 - 0.624396
NA Francci3_0978 two component transcriptional regulator, winged helix familychromosome CDS1156947 966 - 0.70911
NA Francci3_1288 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS1539416 1815 + 0.723416
NA Francci3_2760 UspAchromosome CDS3252904 1020 + 0.739216
NA Francci3_3002 serine/threonine protein kinase with WD40 repeatschromosome CDS3556292 2508 + 0.754386
NA Francci3_3677 stress proteinchromosome CDS4409767 576 - 0.668403
NA Francci3_0954 signal transduction histidine kinase regulating citrate/malate metabolismchromosome CDS1127399 1128 + 0.68883
NA Francci3_0977 periplasmic sensor signal transduction histidine kinasechromosome CDS1155743 1140 - 0.72193
NA Francci3_2152 PAS/PAC sensor hybrid histidine kinasechromosome CDS2519963 2013 - 0.709886
NA Francci3_1556 serine phosphatasechromosome CDS1865641 1092 - 0.695055
NA Francci3_3865 GTP-binding protein TypAchromosome CDS4627929 1863 - 0.683843
NA Francci3_2987 transcriptional regulator, SARP familychromosome CDS3538048 849 - 0.711425
NA Francci3_1477 hypothetical proteinchromosome CDS1770822 264 + 0.67803
NA Francci3_3896 PhoH-like proteinchromosome CDS4658579 1293 - 0.689869
NA Francci3_0441 anti-sigma-factor antagonist (STAS) domain proteinchromosome CDS524017 348 + 0.663793
NA Francci3_0470 histidine kinasechromosome CDS550454 1278 + 0.697183
NA Francci3_2445 periplasmic sensor signal transduction histidine kinasechromosome CDS2839467 1422 - 0.726442
NA Francci3_1779 putative signal transduction histidine kinasechromosome CDS2115961 645 - 0.702326
NA Francci3_2266 protein of unknown function DUF397chromosome CDS2644970 480 - 0.716667
NA Francci3_0235 periplasmic sensor signal transduction histidine kinasechromosome CDS274454 1503 + 0.741184
NA Francci3_3515 diguanylate phosphodiesterase (EAL domain)chromosome CDS4199004 909 - 0.713971
NA Francci3_3395 serine/threonine protein kinase with WD40 repeatschromosome CDS4025043 2190 - 0.719178
NA Francci3_3428 Limonene-1,2-epoxide hydrolasechromosome CDS4077789 420 - 0.7
NA Francci3_2288 putative transcriptional regulator, Fis familychromosome CDS2668112 1611 + 0.72874
NA Francci3_0400 putative signal transduction histidine kinasechromosome CDS472130 612 + 0.676471
NA Francci3_1039 two component transcriptional regulator, LuxR familychromosome CDS1235124 717 + 0.641562
NA Francci3_3783 PDZ/DHR/GLGFchromosome CDS4534083 1038 - 0.704239
NA Francci3_2952 serine/threonine protein kinasechromosome CDS3489708 4221 + 0.715233
NA Francci3_2695 dual specificity protein phosphatasechromosome CDS3181207 552 - 0.648551
NA Francci3_0727 serine/threonine protein kinase with WD40 repeatschromosome CDS838950 2502 - 0.730615
NA Francci3_2258 two component transcriptional regulator, LuxR familychromosome CDS2636770 675 - 0.688889
NA Francci3_2874 serine/threonine protein kinasechromosome CDS3389367 1815 + 0.75427
NA Francci3_1613 diguanylate cyclase (GGDEF domain)chromosome CDS1934288 1767 - 0.699491
NA Francci3_0413 conserved hypothetical proteinchromosome CDS492091 408 - 0.705882
NA Francci3_4049 GAF sensor hybrid histidine kinasechromosome CDS4834718 4221 - 0.684672
NA Francci3_4432 protein serine/threonine phosphataseschromosome CDS5297199 1410 + 0.710638
NA Francci3_2523 diguanylate cyclase (GGDEF domain)chromosome CDS2982679 1764 - 0.706916
NA Francci3_4025 transcriptional regulator, LuxR familychromosome CDS4811271 903 - 0.683278
NA Francci3_3510 SOS-response transcriptional repressor, LexAchromosome CDS4194229 771 + 0.702983
NA Francci3_2228 phage shock protein A, PspAchromosome CDS2601177 756 + 0.732804
NA Francci3_0084 two component transcriptional regulator, LuxR familychromosome CDS102901 720 - 0.7125
NA Francci3_4230 cyclic nucleotide-binding domain (cNMP-BD) proteinchromosome CDS5045793 1404 + 0.683761
NA Francci3_4063 diguanylate cyclase (GGDEF domain)chromosome CDS4861356 1785 - 0.681233
NA Francci3_1176 Stage II sporulation Echromosome CDS1404171 1929 + 0.711249
NA Francci3_4330 ATP-binding region, ATPase-likechromosome CDS5172263 1551 + 0.722115
NA Francci3_0890 hypothetical proteinchromosome CDS1033071 594 - 0.599327
NA Francci3_3629 transcriptional regulator, Crp/Fnr familychromosome CDS4334409 792 - 0.661616
NA Francci3_2101 hypothetical proteinchromosome CDS2467702 471 + 0.632696
NA Francci3_4303 putative serine/threonine kinase anti-sigma factorchromosome CDS5135464 531 + 0.694915
NA Francci3_0325 putative signal transduction histidine kinasechromosome CDS381299 1323 - 0.710506
NA Francci3_2860 periplasmic sensor signal transduction histidine kinasechromosome CDS3368511 3024 - 0.707011
NA Francci3_2813 extracellular solute-binding protein, family 3chromosome CDS3312873 960 - 0.716667
NA Francci3_3434 hypothetical proteinchromosome CDS4082315 474 - 0.64135
NA Francci3_3288 two component transcriptional regulator, winged helix familychromosome CDS3896185 819 - 0.68254
NA Francci3_4286 transcriptional regulator, Crp/Fnr familychromosome CDS5118608 726 - 0.669421
NA Francci3_4051 putative serine/threonine kinase anti-sigma factorchromosome CDS4841637 846 + 0.729314
NA Francci3_2811 serine/threonine protein kinasechromosome CDS3310105 2193 + 0.737346
NA Francci3_2154 periplasmic sensor signal transduction histidine kinasechromosome CDS2522541 1719 - 0.688773
NA Francci3_3256 serine/threonine protein kinase with WD40 repeatschromosome CDS3855411 2487 - 0.703257
NA Francci3_4386 protein serine/threonine phosphataseschromosome CDS5241514 1359 + 0.726269
NA Francci3_4250 FHA domain containing proteinchromosome CDS5071936 1644 + 0.744526
NA Francci3_2136 serine/threonine protein kinasechromosome CDS2503926 1983 + 0.705497
NA Francci3_3685 histidine kinasechromosome CDS4420977 1533 + 0.726027
NA Francci3_0650 serine/threonine protein kinasechromosome CDS742970 1647 + 0.733455
NA Francci3_3797 hypothetical proteinchromosome CDS4550253 1488 + 0.747984
NA Francci3_2423 extracellular solute-binding protein, family 3chromosome CDS2814377 1032 + 0.744186
NA Francci3_2468 carbon starvation protein CstAchromosome CDS2912491 2271 - 0.667988
NA Francci3_0682 serine/threonine protein kinasechromosome CDS778301 2025 - 0.737778
NA Francci3_4048 response regulator receiver proteinchromosome CDS4833943 726 - 0.668044
NA Francci3_4425 serine/threonine protein kinasechromosome CDS5290302 1842 - 0.721498
NA Francci3_1491 diguanylate cyclase (GGDEF domain)chromosome CDS1785092 1689 + 0.714624
NA Francci3_2301 adenylate/guanylate cyclasechromosome CDS2683549 600 + 0.7
NA Francci3_0321 two component transcriptional regulator, winged helix familychromosome CDS375329 1221 - 0.677314
NA Francci3_0263 stress proteinchromosome CDS304876 585 + 0.632479
NA Francci3_4449 UspAchromosome CDS5318055 936 + 0.74359
NA Francci3_0305 histidine kinase, dimerisation and phosphoacceptor regionchromosome CDS351807 933 - 0.732047
NA Francci3_3760 signal transduction histidine kinasechromosome CDS4508354 1536 - 0.697266
NA Francci3_1267 PhoH-like proteinchromosome CDS1513479 1038 + 0.66763
NA Francci3_1377 (p)ppGpp synthetase Ichromosome CDS1653600 2244 + 0.71836
NA Francci3_2325 protein tyrosine phosphatasechromosome CDS2703297 447 - 0.684564
NA Francci3_3048 hypothetical proteinchromosome CDS3615257 213 - 0.713615
NA Francci3_3654 hypothetical proteinchromosome CDS4373693 1365 + 0.710623
NA Francci3_0971 FHA domain containing proteinchromosome CDS1149113 552 + 0.759058
NA Francci3_4285 adenylate/guanylate cyclasechromosome CDS5114889 3615 + 0.728907
NA Francci3_3623 serine/threonine protein kinasechromosome CDS4326261 2148 + 0.72486
NA Francci3_4470 response regulator receiver proteinchromosome CDS5341256 447 - 0.657718
NA Francci3_0304 putative signal transduction histidine kinasechromosome CDS351427 384 - 0.723958
NA Francci3_3419 serine/threonine protein kinase with WD40 repeatschromosome CDS4063071 2697 - 0.718576
NA Francci3_3144 Glutamate-ammonia-ligase adenylyltransferasechromosome CDS3718202 3204 - 0.751248
NA Francci3_4499 cyclic nucleotide-binding domain (cNMP-BD) proteinchromosome CDS5371023 468 - 0.696581
NA Francci3_3973 FHA domain containing proteinchromosome CDS4754237 1341 + 0.726324
NA Francci3_3480 Regulator of polyketide synthase expression-likechromosome CDS4148285 1620 + 0.72284
NA Francci3_2153 response regulator receiver proteinchromosome CDS2522041 504 - 0.621032
NA Francci3_0234 two component transcriptional regulator, winged helix familychromosome CDS273729 729 + 0.711934
NA Francci3_2673 serine/threonine protein kinasechromosome CDS3155236 1623 - 0.711645
NA Francci3_4431 FHA domain containing proteinchromosome CDS5296705 498 + 0.654619
NA Francci3_4248 protein serine/threonine phosphataseschromosome CDS5070082 1314 + 0.728311
NA Francci3_0471 two component transcriptional regulator, winged helix familychromosome CDS551849 681 + 0.668135
NA Francci3_1486 putative signal transduction histidine kinasechromosome CDS1777591 1740 + 0.72069
NA Francci3_3617 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS4317105 2460 - 0.719512
NA Francci3_2139 diguanylate phosphodiesterase (EAL domain) with GAF sensorchromosome CDS2507308 1212 - 0.703795
NA Francci3_0925 transcriptional regulator, LuxR familychromosome CDS1071161 894 + 0.733781
NA Francci3_2989 hypothetical proteinchromosome CDS3539948 420 + 0.721429
NA Francci3_3065 stress proteinchromosome CDS3634227 582 - 0.651203
NA Francci3_4415 putative serine/threonine kinase anti-sigma factorchromosome CDS5279895 528 + 0.613636
NA Francci3_1468 FHA domain containing proteinchromosome CDS1760419 546 + 0.675824
NA Francci3_3477 protein tyrosine/serine phosphatasechromosome CDS4146398 738 + 0.696477
NA Francci3_3728 response regulator receiver proteinchromosome CDS4463431 387 - 0.653747
NA Francci3_3113 response regulator receiver proteinchromosome CDS3685293 429 + 0.713287
NA Francci3_0359 serine/threonine protein kinasechromosome CDS418487 1896 - 0.73365
NA Francci3_0174 serine phosphatasechromosome CDS204685 1173 - 0.710145
NA Francci3_1004 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS1195983 2178 + 0.703398
NA Francci3_3249 serine phosphatasechromosome CDS3847034 930 - 0.687097
NA Francci3_2335 transcriptional modulator of MazE/toxin, MazFchromosome CDS2710322 360 - 0.719444
NA Francci3_0961 transposase, IS4chromosome CDS1133945 750 + 0.658667
NA Francci3_2425 protein serine/threonine phosphataseschromosome CDS2817702 1035 + 0.785507
NA Francci3_0308 two component transcriptional regulator, winged helix familychromosome CDS354896 720 + 0.686111
NA Francci3_1156 periplasmic sensor signal transduction histidine kinasechromosome CDS1376036 1581 + 0.72296
NA Francci3_1508 stress proteinchromosome CDS1799842 657 - 0.656012
NA Francci3_1560 putative signal transduction histidine kinasechromosome CDS1870483 1767 - 0.719864
NA Francci3_0303 two component transcriptional regulator, LuxR familychromosome CDS350786 645 - 0.722481
NA Francci3_3705 transcriptional modulator of MazE/toxin, MazFchromosome CDS4439131 417 + 0.697842
NA Francci3_1009 protein tyrosine phosphatasechromosome CDS1201616 525 - 0.691429
NA Francci3_2433 serine/threonine protein kinasechromosome CDS2826848 1581 - 0.741303
NA Francci3_3461 response regulator receiver proteinchromosome CDS4126718 435 + 0.691954
NA Francci3_2140 UspAchromosome CDS2508770 1248 + 0.749199
NA Francci3_2370 two component transcriptional regulator, winged helix familychromosome CDS2746875 675 - 0.675556
NA Francci3_3178 PAS/PAC sensor signal transduction histidine kinasechromosome CDS3767555 1146 - 0.69808
NA Francci3_0531 serine/threonine protein kinasechromosome CDS616702 1839 + 0.73627
NA Francci3_2856 regulatory protein, LuxRchromosome CDS3365896 996 - 0.707831
NA Francci3_0085 putative signal transduction histidine kinasechromosome CDS103611 1764 - 0.703515
NA Francci3_3251 putative signal transduction histidine kinasechromosome CDS3848815 1779 - 0.693648
NA Francci3_4302 anti-sigma-factor antagonist (STAS) domain proteinchromosome CDS5135084 342 + 0.646199
NA Francci3_4047 serine/threonine protein kinase with WD40 repeatschromosome CDS4831006 2751 - 0.704108
NA Francci3_3818 stress proteinchromosome CDS4576164 1482 - 0.720648
NA Francci3_3253 two component transcriptional regulator, LuxR familychromosome CDS3852590 642 + 0.654206
NA Francci3_1151 serine phosphatasechromosome CDS1368953 2142 + 0.722689
NA Francci3_0048 adenylate/guanylate cyclasechromosome CDS59204 3429 - 0.723243
NA Francci3_0377 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with GAF sensorchromosome CDS443682 3066 + 0.693085
NA Francci3_1487 two component transcriptional regulator, LuxR familychromosome CDS1779390 696 - 0.695402
NA Francci3_2400 periplasmic sensor signal transduction histidine kinasechromosome CDS2778591 1656 - 0.754227
NA Francci3_2769 two component transcriptional regulator, LuxR familychromosome CDS3264953 921 - 0.745928
NA Francci3_2889 putative DNA-binding proteinchromosome CDS3404367 1434 - 0.704324
NA Francci3_4534 serine/threonine protein kinasechromosome CDS5416410 2040 + 0.716176
NA Francci3_3283 osmosensitive K+ channel signal transduction histidine kinasechromosome CDS3887327 2565 + 0.709942
NA Francci3_0218 putative serine/threonine kinase anti-sigma factorchromosome CDS256823 996 + 0.717871
NA Francci3_2741 cyclic nucleotide-binding domain (cNMP-BD) proteinchromosome CDS3230035 678 - 0.679941
NA Francci3_4436 serine/threonine protein kinasechromosome CDS5303179 2076 + 0.707129
NA Francci3_3740 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS4475443 2382 + 0.692695
NA Francci3_2875 serine/threonine protein kinasechromosome CDS3391556 1626 + 0.769988
NA Francci3_0324 response regulator receiver proteinchromosome CDS380496 807 - 0.732342
NA Francci3_2421 diguanylate phosphodiesterase (EAL domain) with GAF sensorchromosome CDS2811667 1299 + 0.705928
NA Francci3_0368 diguanylate cyclase (GGDEF domain) with PAS/PAC sensorchromosome CDS428922 4023 - 0.684812
NA Francci3_0765 two component transcriptional regulator, LuxR familychromosome CDS890225 714 + 0.638655
NA Francci3_3764 putative PAS/PAC sensor proteinchromosome CDS4513251 1932 + 0.726708
NA Francci3_0918 putative serine/threonine kinase anti-sigma factorchromosome CDS1061204 429 - 0.717949
NA Francci3_0320 periplasmic sensor signal transduction histidine kinasechromosome CDS373644 1659 - 0.729958
NA Francci3_1719 hypothetical proteinchromosome CDS2053016 360 - 0.7
NA Francci3_0524 response regulator receiver proteinchromosome CDS609331 546 + 0.699634
NA Francci3_0145 transcriptional regulator, SARP familychromosome CDS174006 708 + 0.676554
NA Francci3_4180 PAS/PAC sensor hybrid histidine kinasechromosome CDS4983821 1974 - 0.691996
NA Francci3_1622 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS1948335 2079 + 0.715729
NA Francci3_2444 two component transcriptional regulator, winged helix familychromosome CDS2838805 666 - 0.672673
NA Francci3_3696 metal dependent phosphohydrolasechromosome CDS4432195 549 - 0.735883
NA Francci3_0778 putative PAS/PAC sensor proteinchromosome CDS905254 1542 - 0.688716
NA Francci3_3030 periplasmic sensor signal transduction histidine kinasechromosome CDS3596486 1731 + 0.719815
NA Francci3_2835 protein tyrosine/serine phosphatasechromosome CDS3339479 852 + 0.746479
NA Francci3_0089 response regulator receiver proteinchromosome CDS108070 516 - 0.736434
NA Francci3_4430 FHA domain containing proteinchromosome CDS5295376 1323 + 0.727891
NA Francci3_1618 response regulator receiver and ANTAR domain proteinchromosome CDS1941327 600 + 0.675
NA Francci3_2597 putative PAS/PAC sensor proteinchromosome CDS3064426 1785 - 0.72605
NA Francci3_0290 response regulator receiver modulated serine phosphatasechromosome CDS336011 1173 + 0.72208
NA Francci3_2369 periplasmic sensor signal transduction histidine kinasechromosome CDS2745497 1386 - 0.695527
NA Francci3_0360 serine/threonine protein kinasechromosome CDS420513 1527 - 0.733464
NA Francci3_4209 two component transcriptional regulator, LuxR familychromosome CDS5025556 606 - 0.579208
NA Francci3_3029 two component transcriptional regulator, winged helix familychromosome CDS3595675 798 + 0.729323
NA Francci3_0443 response regulator receiver proteinchromosome CDS525625 753 - 0.710491
NA Francci3_1680 two component transcriptional regulator, LuxR familychromosome CDS2017552 690 - 0.668116
NA Francci3_1480 putative phosphohistidine phosphatase, SixAchromosome CDS1773363 558 - 0.706093
NA Francci3_4309 two component transcriptional regulator, winged helix familychromosome CDS5147196 735 - 0.704762
NA Francci3_1989 putative PAS/PAC sensor proteinchromosome CDS2336039 2169 - 0.658829
NA Francci3_4215 hypothetical proteinchromosome CDS5032291 369 + 0.655827
NA Francci3_4435 serine/threonine protein kinasechromosome CDS5301554 1629 + 0.735421
NA Francci3_0757 extracellular solute-binding protein, family 3chromosome CDS880951 876 - 0.6621
NA Francci3_3981 serine/threonine protein kinasechromosome CDS4763864 2199 + 0.772624
NA Francci3_3624 periplasmic sensor signal transduction histidine kinasechromosome CDS4328518 1575 - 0.686984
NA Francci3_2424 serine/threonine protein kinasechromosome CDS2815348 2358 + 0.749364
NA Francci3_1446 serine/threonine protein kinasechromosome CDS1736879 1941 + 0.727975
NA Francci3_0644 periplasmic sensor signal transduction histidine kinasechromosome CDS729800 3849 - 0.710055
NA Francci3_4261 two component transcriptional regulator, winged helix familychromosome CDS5083247 888 - 0.743243
NA Francci3_2802 putative transcriptional regulator, Fis familychromosome CDS3300026 1155 + 0.700433
NA Francci3_2700 putative signal transduction histidine kinasechromosome CDS3185483 624 - 0.721154
NA Francci3_0291 multi-sensor signal transduction histidine kinasechromosome CDS337183 1632 + 0.70098
NA Francci3_1155 two component transcriptional regulator, winged helix familychromosome CDS1375230 708 + 0.69209
NA Francci3_0309 periplasmic sensor signal transduction histidine kinasechromosome CDS355612 1425 + 0.745263
NA Francci3_3633 diguanylate phosphodiesterase (EAL domain)chromosome CDS4338619 1362 + 0.704846
NA Francci3_3535 phage shock protein A, PspAchromosome CDS4224026 840 - 0.710714
NA Francci3_4050 serine phosphatasechromosome CDS4839111 2301 + 0.740548
NA Francci3_3754 putative serine/threonine kinase anti-sigma factorchromosome CDS4503144 537 + 0.718808
NA Francci3_3410 serine/threonine protein kinasechromosome CDS4050547 1125 - 0.706667
NA Francci3_3284 two component transcriptional regulator, winged helix familychromosome CDS3889978 699 - 0.708154
NA Francci3_1290 protein tyrosine phosphatasechromosome CDS1542963 792 - 0.724747
NA Francci3_2401 two component transcriptional regulator, winged helix familychromosome CDS2780253 852 - 0.710094
NA Francci3_4461 putative methyl-accepting chemotaxis sensory transducerchromosome CDS5333869 573 + 0.755672
NA Francci3_0683 serine/threonine protein kinasechromosome CDS780419 2088 - 0.715038
NA Francci3_4130 hypothetical proteinchromosome CDS4931451 891 - 0.601571
NA Francci3_3520 extracellular solute-binding protein, family 3chromosome CDS4204803 891 + 0.652076
NA Francci3_3413 protein serine/threonine phosphataseschromosome CDS4054945 2256 - 0.730053
NA Francci3_1376 (p)ppGpp synthetase Ichromosome CDS1650989 2589 + 0.702588
NA Francci3_2138 putative serine/threonine kinase anti-sigma factorchromosome CDS2506792 468 + 0.730769
NA Francci3_4185 serine/threonine protein kinasechromosome CDS4993404 2160 + 0.733333
NA Francci3_0901 hypothetical proteinchromosome CDS1042363 2814 - 0.555082