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# Synechococcus sp. JA-3-3Ab, JA-3-3Ab

>CYA_0201 DNA-binding response regulator
MSSPVRVLIADDHPLFRLGLKFALQAQGFEVVAEAETGSQAVEYCRRCPV
EVALLDVRMPDGDGILACQQIVELGLPVVVVMMTTFQEPGLIEAARRAGA
KGYLSKETDPAELARVIRQILSNPERDWLPARQELPKLTPRELCVLQLMK
EGLANKQIARRLGLSIETVKEYASAAYRKLDASDRVTALLKAQQLGIL
>CYA_2105 anti-anti-sigma factor
MDFKLRIRTAETPQGQKLAIVPLEGRFDAKAASEVRQLLQQVLDFGYHNL
LIDMSAVTFMDSSGLGVLISALRKCRAAGGNLSLCCVPESVSLVLSLTSM
EKVLTCFDDLETGIANFSTASSAR
>CYA_2155 sensor histindine kinase/response regulator
MPVSCRLLCPPSRWGRRFSIGPNPTSLDPREWQVRLQFLDEAQAYLDTLE
AGVLGLGSQSLDRPRLDRLLRAAHSIKGGAAMMGFPVLSDLAHRLEDGFK
ILQVDPQKADPAVERNLLAALDCMRQIAQQHRQQRLLDESWLAERVQPLF
DQLREQLGELQPEDNVQVLAAEAGGDMRVLLFATEVEACLQRLEGVLAHP
EQPCLREEFLIAAQELGALGEMLDLPAFATLCGSVVQALETLPPNAKEQV
LPVAQAALQAWRRSQALVLVGQVALLPSSWDPAEPPVSPPPEAPPPAMAG
ATELPDSIPAGAKSAAEMLRVPARPLEQLGELLGELIGERNRLNSRLQRL
RELVSLFKRRVRTLEETNSRLRSSYDRVAATVPASVLLKKEGDPGLTLAD
TFDLLEMDRYGEMHLLTQEVMETVVQIDEVTHDIDTTLQETEGSARQLSR
LSRQMQTRLDQVRMQPLSDLTDRFPRALRELSLAHGKPVELRVLGGSTLI
ERSILEALADPLLHLVRNAFDHGIEAPDTRLAQGKPAKGLIEIAASQRGN
RTLITVRDDGAGICLDKIRARALQIGFSAADLAEASSQELLELIFQPGFS
TAERVSELSGRGVGLDVVRTNLQRIGGQVQVESWPGRGTLFTLTLPVSLS
VTRVLLTECQGLMLAFPANAVEELLIPPQLPADSFLWEGEQIPLIPVGHW
FRFARWQPRREIDETPLLDRPVVLLVVEDNRPYGLLVDRFWREQEVTLRP
VEGGLPLPSGFSGCTVLADGRIALFVDPPALLSWLLAQRDQPCQSARDPL
PQPRFAAQPTLLVVEDSVNVRRFLAMTLERAGFRVEQARDGQEALEHLQR
GIPIRAVITDIEMPRLDGFGLLAQIRAHPLYDQLPVVMLTSRSGEKHRQL
AQRLGASAYLSKPFQEQELIQKLRQLLQPASSAPSTGVLMAR
>CYA_1774 hypothetical protein
MLSSVQRKCISTSCWNWLWSGSTAARFAPWIEPVLIFQAPQAIPARHCLE
WRSPPPLTAAMSSRSSDWFTRARHIFYGTATALVEILQDPEKRAENLNRL
SMDLAQLAAELEQKGELIEQEAVRYVESLRDPAANAPATVPDSERPAPAE
STPPTTASPAGSAPISKEEMAELMELIHQIESLRLDLERLRTEPPSASS
>CYA_2153 hypothetical protein
MPLLSPLRLRRLARQEQLRNRQTLITFQLGSYCFGLPVDRARRVFSWAEF
QLAQEGGPQLLDTGRLLLGRGIPFQPEGVILLQPGSSEDGLSDQIDNPET
GALPIPTQPLLRRLTSSQLQPLPSRYAAQARQRGIVQWIPPVEGQLPLLV
FDPHLWPACS
>CYA_2262 protein kinase
MSFDLTNRILGGRYRLIQEIGGGGMGSVFRALDLHNNHQEVAVKILHAPL
LLSRGDAQIDLRRRFAEEIRISILLGQHPRIVKVLDHGQEGEQAYLVMEY
LKGQDLGKLMREKGALPLRQVIRLALQACEGLHFAHTFRAKVDGREIRGV
IHRDIKPSNLFLEQVLQEGQLTSQLKILDFGVAKTLADHTLSLGTHKGGG
FIGTARYASPEQIRGKSLDARSDIYSFGVVLYEMLTGSMPFRLETDSLHS
WIHAHCYESPLEINPETTPQPIPPALAAVVMDCLKKNPDERPQTMQELGE
RLLQAYELTVATQLPSSQASTVILPTGGAKAQNEAPPSSDPRPPIKTTGN
TGSASGAFEDIRDEDLDLVEDDPIPPAGAGIPYYIAEREPLPSDPSAEAA
PDPSPKVEGETAETPSTVIQASNTLPAAPPQDPPVPPRTDTPPTRPLPQA
APPTVLQPSGSSLKWVLAGGGAVALLAAFLLWPRPTIRDTQEEPEPISTA
EVTPTPTPEPTPTPTPPPTPTPTPPPTPTPTPPPTPTPTPPPTPTPTPPP
TLTPTPPPTPTPAPTPTPTPVPTPTLTPIPRFTPLVPRTPTPTPTPIPTP
TSTPAPATPTPAPEFALSGQWLYEGGSFVWQGSLCKINVATGIQETVSIQ
QNGDQIIISSPSFSERSGQLIGNQLSVSGRIGGSGTPTVTWSGTVSSDGR
LIRGTATCGSASFAIRLTRQS
>CYA_0685 cystine ABC transporter, cystine-binding protein
MSVSRRRSLQALFLTLAGCWALGTHQGSLLAQGSDLLAQVQERGVLRVST
DSNYRPQSYLNPDGSWEGFDVDVAREIAKRLGVKAEFLDINFDVITAGSW
NGRWDVNVGSMTVTAERQKALLFTIPYYYTPASFVVHQASTLTDIAALEG
KRVGVGTATTYQAYLEGNLTLEGETIQVPAPRVDIRIYDTDSLALQDLAL
GDGTRLDAVLTALPTAENAIREGLPLKTLGDPVYYEALAVALDRSSPAPS
ESLQAKINEILESMHADGTLTALSKRYYGIDLTKKAE
>CYA_0100 GAF/SpoIIE domain protein
MKPAILPAPPKPEPVAELGTDQQPMLYLLGGLAFALRSFNNLNQILELTA
FVASQLTAADGGALVLFNPNGTIQLDQLHCSDLDRREQIRAEMEQIAQAL
SAQEPILKTEGSLSVKIPALEHLLDERLRQSLGPDVRLFGTPLLIRSSVQ
GRLYVFSRQPGYQWNERRQQLLRLVADQAGVAIENERLTAALRRKMALEK
EMEIGSYIQTQLLPRQYPQVPGIRLAARCRVASKVGGDYYDFIKIPSERP
ENSRAAADEPVGSLAPSPEPSEDFRLAIVIGDVMGKGVPAGMLMSMTRAM
VRAEALNRHSPARVLQHLNRAMYSDLENSNRFISLFYSEYDPRSRRLCFS
NAAHNPTLWWRARSRDIQPLDTEGALIGLEEHSQYSESCVHLQPGDVVVY
YTDGYVEAANTRGERLETSGLMEAIQRAASRYESPEEILENLFEQMDAFR
GRQGSHPVVPGPPVDAGLLFQDEISLRPEPVDDTTLVVLKVLPDSEPT
>CYA_1629 low molecular weight phosphotyrosine protein phosphatase family protein
MSQKLLFVCLGNICRSPAAEGITNHLLQSSGHEGDILCDSAGTAAYHLGS
PPDRRMRQVAQRYGLELHGQARQIHPLDLREFDLILAMDRQNYRDILSLD
PQRRYADKVRLICSYCRSHTDEEVPDPYYGGEAGFHYVIELLWDACSGLL
ESLIPGIQCPPLPSRT
>CYA_0066 FHA domain protein
MSAPAAQPSPPHLVLIFTDRMGRRGVVLDKIYYSVGRAASNHIRLYDSCV
SREHALIIRIPEENRAGYGYMIFDGSSASRRSTNGLFVNGKRVLSHRLQL
LDKIGFGPNVTAIVESTDRLSPETLAALLRPPALGDNVTPTGSQRETLKE
TPRENDDFTAA
>CYA_2756 protein kinase
MAWAVGEELQGGRYRIEAVLGEGGFGITYRAWDSVRAEDVVIKVLKDSIR
EDPDYPRFQQNFMNEALQLARCRHPHVVKVEEVIWEQERWCIVMEYIRGQ
TLHQLLRQKGPLPLPEALRLTREVGSALMALHEQGILHRDVKPANILVRE
GSGQAVLIDFGLARAYAQGLIQRHTSYGTDGYAPLEQYDSLRRRGAFTDV
YALAATLYTLLTGIVPLCAPVRATGRQLDPPRSLNPSIPEEVEAAILKGM
ALHPEERPQTMAEWLALLPGAASQEEKKPLTFEPAIRTQDLRQLERLLAP
QPQDELEQLLAQHSAEELEQMVAPPTPATTKKKEGASGSLVSPEVCLEGQ
GSLPATLPWPDWVGEAAPALQGLWDRLRAGQWGEADRWTTALMLKLGGRS
QVGFFDPKDVEAFPCPMLRLIDQLWMQASHGRFGFTVQKQLWQECDSEKR
GGLSSRSFSALPREECMGEKVGWQIQGRWLEYGELKTNLEAPKGHLPVGF
FWGYSGGLRAALLMLDRAVLKKFKACL
>CYA_0479 response regulator
MSKRILVIEDEPAIRTYLQKVLQRAGYDTVAASDGEEGLQMVHALLPDLV
LCDVVMPKLNGYGVLDAVRWGRSTAHIPFVFLSSKTSREDMEEGLRLGSN
AYLTKPIDQNHLLRAIAAQLL
>CYA_2742 sensor histidine kinase/response regulator
MNEEAQKRILGYFIEEARDHLATIEQGLLSLRDSVSDPELINELFRAAHS
IKGGAAMLALASIQRTAHRLEDFFNVFRSRPGEVPVDQHLETLLLRVFDG
LAALLDELQSPRGLTQEFSNATLAELEPVFQETENYIQSLLGAGPVASSA
PAAPPPPAARTLQQEMAEVVPQQLRQMLELFKRGDQPGIREQLREANAVL
KQIGQAHHLAGWQQLTETFEQALGNPDADLRTLALVALRDLKQGQQLILA
GRAEEVTASAELQQLARPAAPAPPPDPLEVVVHQQIPALLRQMLELFKRP
DDPATRPALQSLAQSLQQVGQAEGVDLGGWTALARLIGEILADPAQDLRQ
LALPVLRDLKQAHQALASGAAQTIQPSAELLAFRPVLPALEEPEPLFLEP
ESTPAPADWAAAGIPAEESSAPDGSQEEPEPGEAIPVEATLQAEEAAWDL
LAEQPPSTLEMDSVLAGEEGPGLSWPEMSTEALPEEDWQAAADLAQEGVA
APEEAAAARGWLQDRLSFGSGDFDAPPLSLEAEASAAFDELFANAEQLSD
IEEPPPELIPPSPEPFSQALEELSPEEGGAETDLAELFAEVMGEAAAELS
PVEPAELTGAEETSQAIWDVPAQERAAQVAAESPEEASAADEAASVGVEA
LFELEELAVESSPLQELSQLPDFGAAPDSGPEADLWAEEPSPSLQPGDGE
AAADLWAEFPADIWPGDFSVPDETGSLTSLDSAAEGGLESLVSAADQAWW
SPEEAGEPSPSFEVASQPSSDLADSAAVEQLEDLFAEESSPGEPAAAAES
FLAPSDESTAAETPDLGAELSLADLFAGETLEDAPGTGDAAQAQDWALLE
NLFPVQEEALYPEGQPAEAFDRLEALFAEEPATEALSLETSGSLSAMDGE
VDLDELSRFFAEGEAAQEAIPSDLATFLGEAEALQGSSLEGVTLPEPEPL
VAAAEQGGASQPAEDDLASQLESLFAEDELLAAQSATVSPDETQPLEEEA
PEASPAPSLDDLAALFDAAEPAVPPELEEVIAPIVGSPTAVSGEVADDFA
AQLESLLGDLEVAPQVSAAAPAPSPPAVAAPATAAPTAPATPTAPTTRRS
ALSNPVMRVEVRHLDSINNLVGELVVIRNSMEQNQTRLRQFLDGLLGRVQ
QLGELGQRMRDQYDRSLLEAALFSSRSSAATVGFGRNGEESPRGRVGHSI
GQEFDKLEMDQFTAFHTLAQEIIELIVRVRESSSDIEFAVDEAEQITRQF
RQVTTQLQEGLNRARMVPFSQIADRLPRAVRDLSIKTGKQASLVVEGRDT
LIDKAILEELSDPMTHLVNNALVHGIEPPEERRRLGKPPEGKITVKAFYQ
GNQTIIVVADDGAGIPVEKIKAKAQRLGLLSEQATEEEVFNVLFHPGFSV
REASEVDDLAGRGVGLDVVRRNITDLRGSIQVDSVRGKGTTFTIRLPLTL
SISKAMVCVSDKALIAFPLDGVEEMLDVPVDEVQPDEQGRPSIPWRDQRL
PFQPLSNLLSYSRSHSRSRSEVYSIAQEEGILPIVVLQSAGQYVALQVDS
FVEEQEIVIKQLRGPVPKPPGISGATVLGNGRVLPIADVLELVDMAQGRR
RDLSRLWAERRAAEPRAEETHQTTVLIVDDSIAVRELLSMSFQKVGYRVE
QARDGQDAWEKLRGGLRCDLIFCDIEMPRMDGLELLSRIRADSNLRHIPV
AMLTSRGAERHRQTARELGATAYFTKPYLEEELFSAAARMLQGEQLLAPN
PTS
>CYA_2859 serine/threonine protein kinase
MNQLAPGKVIGQRYQLVQSIAAGGMGQVFKAVDTRLFNRPVAVKLLHQNL
AGDENTRRHLLKRFQQEIRISTLLGEHPAIVKVLDYGLENNQPYLVMEYL
TGRSLGELLLKQPLLPPQQVVKIARQVCAGLYYAHNLETEQDGHLIKGVI
HRDIKPSNLFVLKDETLGETVKILDFGIAKLLSDVSLALGTQTTGFLGTV
RYASPEQVRGEELDPRSDIYSFGVVLYRMLTGQHPLKPKTDSFPGWYEAH
NYQQPRPFDRSQLPHEIPPALEEVVLACLAKDPGQRPPNMKLLSDQLEGS
LQSDSSAGSALTPPPTTSPFSERTLAALDGQEGAHRLSAQPEPKGRPLPL
WGGIALLAAIAGSTFWGLRLLLDPGTGMERPPAVPLPPATDGQQAIPEPL
LDWLLRDPAGEPAFEDDPDPARDNPQDPPQPEPTPTPATAPAPPPTSPPP
PPTPVPAAPPPRPVAVPTPAAPPSPARVPAKPLPPQPINQPLFPPINRAA
PPAASPTPAQNPTPSFLERLREERERLGKD
>CYA_1892 DNA-binding response regulator RpaA
MARILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLII
LDLMLPQVDGLTVCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADD
YLTKPFEVQELLVRVRALLRRADRIPQTAKHGEILTYGPLTLVPERFEAV
WFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEILQEVWGYEPDDDIETIRV
HIRHLRTKLEPDPRHPQYIKTVYGAGYCLELPNIADPQPLQPELAKDSSS
P
>CYA_1491 cyclic nucleotide-binding protein
MNSDVSAALLSELKAVPTLAQLSAASLQWLGSQVKLRDIPAGQALFMQDA
WGSVVYLILAGWAKVRRALRAQDSTKTLALLGPGAWVGEMAVLDEAPRSR
DVLALTPLRAAGIPAATFKALMLREPQLCYQLACSLSRRLRLANLQADLD
RQSPPLRVVHALVQLAEAFGEKTEQGVRIVYPPLQDLADISQVSREVAAA
VLGRLQQQGVIQVLPEHQSLLLVQYAKLVEATRLL
>CYA_2779 sensor histidine kinase
METLAPAACASRDVLINRITHQIRQSLELDQILRATVEEVRAFLGTDRVK
VYRFDPEGHGTVVAEARQAERLPSLLGLSFPAGDIPEEARQLFRLAQVRV
IVDVEAQTRFLSQPESLGRFAQARPLPLGEVPQRLVDPCHAHYLKCMGVA
SSLVVPLLHHQQLWGLLVSHHAEPRSYSAEELQVVQLVADQVSIAIAQAE
LLEQARQKAQQERLINQIAALVYSPLHPETTLTTVLEQLTAGLQGIGARL
RIRFLGLDTLCHHGIQPPAGYDAWLQEQVGRPKTAGNGVKTWSLSQLEKW
PELQAQLQQTPIRGLLAVPLVWNEQLVGWLSVFRGALCQETHWAGYRWPA
QGEGGEDPRQELPLISFAAWRELKVDEPKAWSAAELELVGRAAVHLALSI
AQNQLYRQLQDLNARLEHEVEERTAALQRSLAMDALLQRVTDQVRSSLDE
AQILRAVVQELALGLPIQGCDLCLYEGAAGQATVRYEYTAALPPAGGITL
TLADYPDLYRQLQRGQAAQLCHLPGQSWIPRREGLTLLVCPLRDDQGALG
DLWLAKAAAECFDTLEMQVVQQVADHCAIAIRQARLYQASVQQISELERL
NRLKDDFLSTVSHELRTPITNMKMAIQLLKMARTPQKREQYLQILEQECE
REAELINDLLDLQRLEQGSKPLHLEEVSLAAWLPTVLQPFVQRAEANQQQ
LQWQIDPKVGKVVTDQAALTRVVQELVNNACKYTPPQHRITVTARRLSPE
QVQIRVVNEGVEIPRSEWERIFEKFYRIPSGDPWKRGGTGLGLALVKQWM
QRLGGCVSIESGQGKTCFTLVLPQGSLPGQTSCTA
>CYA_2161 response regulator
MVKVLVVEDVASERQLISDYLRSEGYQVVAVANAQEALQQIRNDKPDVVL
TDLVMEGMSGLELCRQIKKNPETQKLPVVACTSKNQELDKLWGMKQGIDL
YLTKPFTREDILRAVKSVVLSASS
>CYA_2576 response regulator
MRRRQSCELRQVVSLLTVTKTVLVAQGQLLQAQLWKLVLESQRHTVVLVS
PQADLVEVAATHSPDLMVVDMTTGLFNPYAFCRECRSRLPDIPVILTHYP
RRPIEPAERRWAIYQGAAEVIPGLAEADDILHSLEQIYKAARWSFPIDTE
ALHAVLEQLGLWSEKDSPPPSPSVATEERQEQTAALPPAKYRLMYRGRPV
E
>CYA_2644 response regulator
MSHFVFAAGELAPLLRQQGRQFSTGYLHLHLKGGDPAEGTEPWVLTYYYG
RLLFSADQPLNPQILLKRLSRFIPRLNLEWSQRAIRVLQERLIKDNSLPE
LLEAIAQLGLIKPGELEDALWLNLLTDFDRYLFERAGTCSFEVQERVAQE
APIGGFELEPLLQEAARRHDRWAELRVAVPTMLAVPVVNWDRVNRYRLTD
EQRQKLHALTKDGQSLEAIAKKLCRDRLEVAGLFAAWAKKGLVSLQTPPE
LLQAKRHAPTTLLAVDDSVVMQEILRQYLSKYHVITTGNPAEVLPLLFQH
RPHLLLMDIAMPGIDGIELCRIVRSLEEFKSLPILMVTSRDSLLDRIRGK
WSGATGYLTKPFSESQLVAEVERLLAQAQQQEHTPYSPRGAKTNPPSPWR
GSPAPLGDQAKA
>CYA_1252 GAF domain protein
MSHGPFAFDLSPGEAKFEAAAALRLSQRLIQVGIALSSETDLRRLLELIV
AQARELTCCDGASLFIREGEELRFFVVNRNEELQDLRLPLAPSSIVGYVV
LTGESLNLPDVYRLPAGLPYAFNSQVDQQTGYRTRSLLTVPMRDPSGNIL
GALQLLNRLRPDRPADLAPDQVADWSQPFSELEVQVAEALASQAAVAYQN
VRLREELKAAHLETIFCLAQAAEYRDQDTAFHLKRMSHYSRILAKELGLS
SHEQELIFYASPLHDVGKIGIPDAILQKPGPLTPEERLIMNRHPEIGYEI
LSKSDSELMKKSAIIALTHHEKFDGSGYPRGLKGEEIPLEGRIVALADVF
DALASRRPYKKAWNLDEIFGFVESQSSSHFDPHVVAAFTRGRGEILEIYH
RYQEPR
>CYA_2814 amino acid transporter, amino acid-binding protein
MGSRSPLAAAIQRSCMAAGLALACLGRGIPAAARPWPEIVRSGQVRIAVK
DNLRPLGFRDPMGKLQGFEIELARELGSRLLGSAEAVELVPVANVKRLQA
VAAGEVDLAIAQLGITPDRARQVEFTSPYYQDGPSLVVARSHNWERWSDV
GGARIAVLRGSAAIPYLQRYLPGVELVAVDSYREGAELLLKGAVQAWAAD
RSVLAGWLAEHPQFQFLGSPLAAVGLGIALPKGLEHAELRLRVRRELENL
RAEGWLAERARAWGLP
>CYA_2184 sensor histidine kinase
MFQATRRWLALWYTVVTGVFLLLFAGSFYWYVQSTLIERVDDTLGHVVEI
VERSLVVDESLLDPQQARQSLEASFRDDPSTLEDDHIDLEWFDPQGSLIW
STVPGGIPAPLLTEGSLHTARIAPGYWLRQFTEPILAGGKLLGYLRVSHP
WFEVSKPTRQLIRDLSLWVVASLACVGGIGWLLSGLAMQPIRQSYQQLKQ
FTADASHELRSPLASIQTTVQVALADPHLDADTRQRWQMVERLCLRLGRL
VDDLLFLARHDSGMVPFQPRCCALDALLLQVVEELQGLANQKGIHLKLDI
VTPDEEAEGYPFAFWGDEDLLARLFTNLIENALLHTPSGGEVQVRLRQRL
RSGSPELVLQVQDSGPGIPPQALPHLFDRFYRVDPARSGDPNRRSGSGLG
LAIVKSIAEQHRGQVQVESEVGQGSTFEVILPQRQLETCTPETL
>CYA_0429 FHA domain protein
MPADPASSPSQTWHVLVIDDEQGRRAVALSAATYSIGRDPSNAIVVHSAA
VSRQHALLLRLPQKGGGYTYRLLDGNIEGKRSTNGISVNGQKCLSWDLKD
GDQIQLGDQVRMQYCIRQLSNEEFQRYLQSVSFRSLKAEVVDRRSTTMQR
FDPPSMRVILPQQERAEKVEDVGSRRRNPLWLLFQTLWGRLGRKSR
>CYA_0796 DNA-binding response regulator
MAPFAQAKSEPASARARILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQ
ALQLLSTTQPQLIISDIMMPGMDGYQFLAQVRKLDPYSHLPVVFLTAKGM
TADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIERSRAASPSEVVARELA
SIRALLSERTLPPTIPSQPPTPTPLPPPIKVELTPREQQVLEKVAEGLMN
KEIAKQLQTSVRNVEKYVTRLLNKTGTSSRTELVRYALTYGLIRL
>CYA_2836 sensory box histidine kinase/response regulator
MPKAPLPPNEKERLAALRQYQILDTAPETAFDEIVRLAAYICGTPIALVS
LIDEHRQWFKAKFGVDVQETPRDVAFCAHAILSPQEPLVVPDATQDPRFA
DNPFVTQEPHIRFYAGIPLVTPEGQALGTLCVVDYQPRHLTPEQLEQLQA
LAHQVVAQLELRRTLRELAQTPLLPKSGDTKPARKNRFLLKVTAGFGLAA
LLLGGITYSAQRNASQLPQLTERVAHTLKVIQNLEGLLAETGAAEAGQYG
YLLTNNPRYLSEYQASLEATSTHLRLLKELTADNPLQQERLKRLELLLEQ
RLRVIQDLIRLREQEGLLATQEALESSEGPRLMEQIVELIRVLQQEENRL
LQQRSQEFQFAWVRTNLIAFGGLIFTYLVLASVYFLIRRETAEREEAERS
LKQERDFTNAVIDTAGALVVVMDPEGRILRFNRAAEQLSGYSLAEVKGRL
LWDLGLIPPEDVPGVKQAFEQLKGNHSLFLNRHENFWRTKQGALRLISWS
NTALINAAGEVEFVMGTGIDITDRKLAELALRESEERYRDLFENATDLIQ
SVDAEGHFLYVNRAWKETLGYDEAQVYQMTLFDILHPDCREHCQALFQKL
LAGEKLERVETAFLTASGETVWVEGNVNCRFEDGVMVATRGIFRNITEQK
KAAEELERQNRRAQLLANLSLKIRESLDIAEILETAVTEIQALLKADRVL
VYRFQPDGSGIISNEKTQPGIPSLAGEVIEDPCFQEKYAQLYSQGRVRVV
SDVESEGLEPCYLELLQKMQVRANMVVPLFLEQQLWGLLLAHQCSGPRQW
QPFEMELLSQLANQIGIALTQAALLERERKRSLELEQARKAAEQAAQAKS
SFLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRVSGDALLTL
INDILDFSKLEVGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLV
PPEVPRYLRGDASRLRQILNNLVSNAIKFTHQGEVVIQAELMQETATHVQ
LRLSVRDTGIGIPKDAQTKLFQPFTQVDASTTRKYGGTGLGLAICKQLTE
LMGGRIFLESEEGRGSTFSLELTLERQPYARQISQQPARIPVDLQGKRLL
VVDDNATNRKIVRYQATAWGMVVEEAENAYQALDKLRQAAREGIPFPLAV
LDMQMPEVDGETLGRWIKADPELSQTQLVMMTSLGLGEHSRRAAEIGFAA
YLTKPVKQTRLQEALVMALGKSSGLATSLLGMGPPLSQSAPSASRPQQPL
RILLAEDNPVNQKVALRQLQSLGYMADVVANGQEVLDLLQRVQYDLILMD
CQMPVMDGYEATRRLRQQERGSGHRTVVIAITANAMQEDRERCLQAGMDD
YLSKPVLKEDLERVLNHWSQRIAPSATGAANGPASPDPPSAEGANGNSAP
TLPYPIDAAYLDRVTGGDRQFQRELLQVFVQDCQNQLPHLRQAVTKGDPE
ELRKVAHRLKGASANVGAHAFSQAARELEHLGVGLAQPGSQADELAWASA
SQKLEELERILADIRQYLQDLEA
>CYA_2676 FHA domain protein
MPQSYDDFFTSTTAVGRGHLSGSQDFDLPLDLFDQVPQQPVSHPEFTLSV
CHPVRPCSYILRESIYTIGRDPSNAIQIVNRFVSRRHAYLVRVPTKSNRT
GFTYCLVDGNRKGQSSTNGVFVNGTRVATHYLRSGDVIYFGPEIRAYFFE
VARIPPLPNPFEVNPDLGKGSNLVPEEMRGGRSPLTDPRLHR
>CYA_1989 sensor histidine kinase
MNAAGIPSGEKQTFALRVDTTLDALSQVLTWFESFRDAGIPGPIWLECQL
ALAEGFTNAVRHAHRTLSPSTPIDIELVLMPQELELRIWDQGQEFNLEEF
FQNRAASRPPDAEVESEGGRGIRLMKALSTHLSYTRQADGRNCLLISRRF
DDPAPLSQRPA
>CYA_2886 sensory box histidine kinase
MSPPISRSPRSVVNGCVAGQAAAREELSLPTELKTESAAALYPLLQLLGQ
LLNVPWVYLELVQPGSHSDSPAKGILYPNPQQIPGNEPPNPIGGSWPFQE
AFPLLDEGGRRLATLYLLGGRPRQLSLPERGQIDLIALSLRHILLQAQEQ
RQALEQLQTQLQHSRSTAARYQPIFENAVEGIFQTTPEGKYLVANPALAH
IFGYESPEDLMRHVSDIGTQIYGDPEQRSEFVQRMLKEGQVVHAEQQVCR
KDGKKIWISLNARALYNEQGEPLYFEGFVTDITASRQLKERQQQLEEARR
ESEHRFLQLAENSQQLFWISTLCGKELIYVSPACEAIWGLSPAEAYANPQ
AWMRRIHPDDRWLFPAIFQAQLQGQPTDVVFRLCRPDGRLLWLRERTFPI
LDKEGKVYRVAGIAEDITESKQLEAERRRIEQAWQQSANHFRQIFELAPN
GIALVDLQGRFIQVNEAFAQIVGYTPEELQRRQQLDILHPDDVNQLLAAN
EALLTRKVSISQRQIRYIHRSGQVVHVLFQAALLTDGAGQPTQFLNQVID
ISARVEAEVALKESEERFRQSFEWSPIAKAMTHLDGTYFQINAAFTETLG
YTLEDLEGKTVLDITHPDDIAVTLESTNRLLAGEVHHCEQEQRYIHKNGQ
IVYALLRITLVRTAQGDPSYFLSQILDITERKQAEAALRQSELSLRGIFE
QSALGISIVDRQGRYLKVNPALEEILGYSGAELVNKSFCDLTHPDDLEED
WRLFQEVLNGQRDRYHLEKRYIHRSGKVVWCRLAVSAVRDPEGKNLFIIG
ISEDITEEKRAELQIQAALQEKEILLREIHHRVKNNLQIISSLLRLQADQ
IKSHKYARVFKDAGSRIQAMSLIHEGLYQSNNLAAVDLRQYLHNLISNLF
HSYGVNPEIIRASIRAEGIRLNLDEAVLCGLIINELVTNSLKYAFPKGRS
GQIDVHFKQTRTYTQLRVSDNGIGLPSNFDFKETQSLGLQLVATLTDQLQ
GKIELRNKSGTTFIITFPRSQP
>CYA_1494 sensor histidine kinase
MVQPPSPYSSSGAGAISPLVALQATLQQMREQSDANALIQLTLEYVKAVF
GAPLIWLAFYDYQNHQLLGQGGFSLVEEPTLLRGVHPLQPGEILEQVVIE
QRPISVPDLSQEPRMGLWQREARRLGGIQGCFIYPFSAAGRRRCLGILML
GSQMWGVTTREEEKALLGILLGQLAASLQELENAWRQQSEKRLEDSLLRL
GTAICQAGSLQERVSLVRQELQTCLGAVHIQVYWHERSRGRFVPHGSASR
PSQPPTPAPMSKEAKAGAASPGDGGLSLRELGDMYYTLADGQVVVGGTGT
TRSEIPLKLMQQLRAQAALAAPILLEKDLLGFIWVQSDVPRTWQAVERQL
VAAAANGLALAAPLENLDRRIRQLADEQEFVQQVGRSLYNPAELPQALQQ
AVVGLGQRLQASAVAVLTVDPDRPNPRLFSEYRSEGKQALPPQFSSLSEQ
DWQDLLRSEVVAAENYNQDLRLLSWRQELAPLGVRSLMLTHTGASGTATP
EGLILVLHPRPRAWSREERQLLRGTAQQVGLLLRQLRSQQRQERQEHLLS
GLIATCLTLQNLATPEALYATIAQQAAQLLQIPLALVVSWQPGESRACLQ
PPFAAAPEFCPSGPTEINRQDPLLAAALQARGPLLLAQDQIPAASRAWLN
SVGLGSWLLVPLGETDPSLPEPLGVLILGAEADRVWEAEEQAAVTLMAQT
CGWTLRRLLWVQTLQERQEVLSELNWYKHRRLLDLQNALLDGLRRLGQVP
GIRGDEATRWQKVVEIGRELRDLAVFAEPLLQTETWQVQPQLLSVPLATL
VRKSLRRVEGLTQKRKLWPRAHGDLSLVVQGDVGRLEMILWEVLLAAALR
SPEGGRLDLWSQATEGYAELLVVDQGSFDPHLLTALQWDPQQVIYADPLF
QSPLSASPGLELGLCQRLLQRMGGQLSFYSSGDGRSVARLLLPLAGKELR
PPAVASGGQGPQQPKQGQQGQRPAI
>CYA_2878 universal stress protein family
MSRSLNFHCQSDRSSEMPAVFSPSSFTTQIDEGKEKRNLESKPKSSLVFC
PSVSHLEEVGMFSRILVAVDRSELSQGVFQKAVQLAKAMQAEMMILHVLS
QEEPGAPEPPMILGVDYSSTISAELWQSYREQCAIFEQNQMDYLRSLVEK
AAEQGVRAEYRLNYGNPGRVICDLARSWKADLIVVGRRGHSGLSELFLGS
VSNYVLHRAPCSVLTIQGEALKKAASAKEETTTASAS
>CYA_0795 sensor histidine kinase
MPRAKKVAEPHPEPEPVCGGGDPRPGGGITLSAQQLSTLLHEMRNPLTAL
STLAKLLQKRLPPDDRNHWIGLSIEQECKHLQDLLAELERLDGIPAPLQL
RPLSLADLLREWSPIYQALAEAQGHRFQAVLPPFLPPVLADPRALRQVLD
NLIDNACKYTPPPGDIQLRVEVKPAEEARGSSASSCQEVWIAVCDNGPGI
HPENLERIFDPFFRADPSKPGQGLGLAISRDLAAQMGGDLEVESSPQGSC
FRLRLLTAQ
>CYA_0323 cyclic nucleotide-binding protein, trunction
MSSSRYPFERVREHLLFQSLEDAEWKALTAALLPSRFSPGQVIFQEGDPS
SDLYVVLSGIVELRRQYMRHPGDYWLATLHAGRVFGELSLLTGRRRSFTA
VSLTEVQTLRLSREGLLLLPLEVQLKLYRAWTQIIGERVFWLDSMFADLL
EQRGAENVASAMALLQQRYPA
>CYA_2316 DNA-binding response regulator
MLRILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRAFQPGLVI
LDLNLPDVSGYDLCQQMQKETGVYVLMLTSRVNPADKLQGFQLGADDYLT
KPFSLPELQARVQAILRRGRTRTETGSAPVLTFPSLVIDPTTREVIRDRR
PINLTALEFDLLYAMARHPGRVWRRSELIQEVWDFNHEGDERVVDVHIGQ
IRKKLETDTSQPELIRTVRGVGYKFEPPTPKEGWGEEKP
>CYA_0978 response regulator
MTAILIVDDDPTIRLVLKRSLERQGYTVEMASGGLEGLEKAHLLTPGLII
CDWMMPDMDGLEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADE
FLSKPIDPNELRARVRAGLRLHQLSYDLQQQTARLRAELAEAASYVRSLL
PKPADFPPHQIAIEWCFLPSQELGGDSFNYHWLDEDHLAIYLLDVSGHGV
GSALLSVSVMNQLRSQSLPDTDLRQPDAVLRALNQSFPMGSHHEMYFTLW
YGVYQPGSRLLSFASAGHPPALLVAQSDPIPLELKTPNLPIGILPDQDFA
RDEVRIPANSCLYVFSDGVYEVSSSEGIWGIENWKSFLSKHACVGLDHVL
QHIQSFRGKADLEDDFSLLRISFG
>CYA_2738 response regulator
MSKVLVVDDNRTYLEAISSLLSESGLEVSTAMDGVEAMDIIRQQKPDVVV
LDIVMPGMNGYEVCREVKKDESTKHIRIVVCSTKDQVFDIEWAKRNQADA
YVTKPFKPQELLATIKQQLREIKETSQK
>CYA_2553 sensory box histidine kinase
MRQKISQLTPQQPTFAWAHPLFDAEGKVRWFEWINQGLFDRRGRLQFIRG
VGRDITEKKQLEENLRLREAQLRALLDALPAAIWARDPQGVLILQNATDR
AWYGDLLGTSLQEAAQQHPHWLEYTGQALSDLERQGFSRLESKEIIQGQE
RYTYRLAVKLQDESKGLGWLGIVFDITEQKRLEQQLREQQERFRAFLDNS
HDILCWIDAQGLVHTLNRPVTEKVLGRCPEEGEPIPLDWVHPEDRQIVAD
ALEQLKARPGETLSFVYRAQHADGHWVWLESRCTNLLQDPLVQGIVCSSR
DITQQKQVELALRESEARFREMAEAVPVNFFVCSADLSQVLYKSHRCQSI
WGYTPEEFYQKPDLWKERLHPEDLPRVLRSLPRAIRGEQPITYRIFHRDG
SLRWLRTSCQPIFNERQEIIRFVGVTEDITEQKEVELALQESEARLRAIL
DRIPFSIFLKDLEGRYLHANRFYLQQRGSELGELIGKLDDELFTPEEARE
FREQDQRALQSPDPVSYERIFSRNGKQLSQWVTKFALRDCQGDPYAVCGV
VVDITPLKQAQDLLMQEAERERLLGALLRRIRQALDLPVILQTTTAEVRE
FLQVDRVMIYQLQEGAGGFVAAESVVDPWPSHLGRYVWDEYFHRDPCHRK
YQQGFVQAIENAATASLDPCYRQLLESFQAQANLVIPIRRGEDLWGLLVA
QHCQSSHPWQEWEIELLQKLTDQLAIALQQAQLYEQVKALKQTLEEKVRQ
RTAELERALQFEALLRSIANRVRDSLDEAEILSAAVRELGESLDADGCDI
GLYNADFTLATIRYEYCPRSDSYLNLSIPLQGGPYETVYRQLTAGQPCLF
CFLGRASENRQVVMACPLLDKGQVLGDLWIFRSAARPFDDQEIQLIQQVA
NQCAIGLRQARLFQAAQEQVQALERLNRLKDDFISTVSHELRTPLASLKM
ALKMLQIARSEEKRAQYFLIAERECQREIELINDLLDLQRLQAEAYALEV
QALTWRDLLGDLLTVTQERARAKGQSFQASVPLESTITTDPLLLQRILRE
LLHNAVKYTPAQGSIRLRVETENRRSIVEVSNSQPIPAEELTRIFERFYR
IPSNDPWKEGGTGLGLALVKQMVDQLRGSIEVSSAAGWTTFTLHLPHLPQ
L
>CYA_2497 universal stress protein family
MPRFENIIAAIDGTGPTEQMVHTLLSLPAFAQCHVTLLHAVPSQTSAEEM
RAAWQKGQELLAQTLQTFPPRPGLKISTQLVEGDPKVVVLQVAESLPNPL
IVMGSRGRNRIMAILQNSVSQYVFQLASCPMLLVKDDAYVKYPSHVMVAL
NNSPAAQAAFATALDLVAGIPGAQIFLASVQLDADAQARDEVLDKAIATL
KSRQISHRVFTAVGDPGTEIVRLAEESKADLLVMGSPDRRPSIARSIPDL
DRLLGRSISDYVRVHIGCPVLMVRSAQD
>CYA_0421 DNA-binding response regulator
MARILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYD
LLVLDWMLPGLSGLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGAD
DYLVKPFELRELLARVRALLRRAAGPGEGIPRLQIGDLELDRENQVAYRQ
GRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYERVWAGEDPPSSNVLAAQV
RLLRRRLRLPGSPELIHAVYGKGYRFGPVAEDPQQPPTPLSPWERG
>CYA_1656 sensor histidine kinase/response regulator
MQRLESNLSAGSVPQTGTSSAAAEKRPLLLIADDDPSQRLLTRYALEREG
YQLVEADSGLACLEAASRYQPDMVLLDAVMPDLDGFECCRRLHAQNPDLP
ILIVTALEDETFVNEAFAAGASDYIPKPIHWSVLKRRLRHLLQANQAQRR
LQQLNQELEAKVQERTAQLACQVADLEQLNRLKDHFLATVSHELCTPLTK
IKLALELLRRTPLNEKQRQYHDIALQECEAEIQLINRLLDLQGLEGKDLG
SAVAAIDLPHLWHSLIESVQQCTQARSLTLQVGDLPPSPWRFYSHPQLLT
QILKELLDNACKFTQPGGTIRLEVQPIPEGVEFRIGNTAQIPPDQLPRLF
ERFYRVPTADPWAQPGSGLGLALVKQWVERLQGHIRVTSEAGWTCFLLRL
PSLKPSGRT
>CYA_0927 DNA-binding response regulator, LuxR family
MKRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQEQPDVVV
SDVVMPEMDGFEFCRQLRQQRGGELVPFIFLSSRSELDDRVQGYEWGADD
YIIKPFEPLELVAKIEAQIERARRTQLEILRLIQQQTQAKAEAAPRPTLA
DLPLTPAEERVFREVIRGLTNKQIGEKLFISPRTVQTHLTNILSKLSLEN
RSQLVRFAYERGYIPREESSDKK
>CYA_2674 polar amino acid ABC transporter (PAAT) family, amino acid-binding protein
MGIPAYPQPAPKPTLPAPASERAQVPDSRWAEIQARGRIRVGLDPSLGPA
YLYTDLERQTYAGFEWDILEALAQTLQVRVEPVYVAWSEQLAALQADEVD
LIWGAREALGLDPQQFLATRPYYLSPQRLVVRDPGPEEAPIEALSQLFGR
KVGIVVNSTGAALLEAYNERRGNAIRLFATSNPDRLFAQLQAGQLDAVLV
DQPVAALSLRQAGSRLRLAGPPLFPIPLVGVVSSQHPSLKEAVDGAIAVL
TENGTLQRILEKWQLWDPTLMSPASPEG
>CYA_2352 sensor histidine kinase
MGLESGILIGLGIGLLGTLILLWQSRRRFGRQLQQLGSLMHLALPLSSPE
QMLSRLSHHLRQQELEWARQKRYLQDWRYLSHHLPWGYLRVDENNVVWEC
NPAAQRLLRISQWQPGIKLLLEWVRSYELDQLIEATRRQEATAPIQSREW
IFYPSGGEDKPVPLRAWGLPLPQAHVAIFLEDRLEATLLAQQRDRWASDV
AHELKTPLTSIRLLAETLHSRVDAAQAVWVERLLNETLRLSQLVQDLLEL
SALNLGAASRSQWRWVDLASLVREAWQSLEPLAKPRQQELDLSGPSQLYL
WGDEQRLYRLVLNLLDNAIKYGGTDSPIHVALSEQESQVRLEVYDHGPGL
PEDQFELVFQPFYRTDAARARSKGGTGLGLAIVRQIVELHGGTIRLRNHP
QAGGLWVQVELPRKHADAL
>CYA_2659 sensory box histidine kinase
MPGETGEPSRGGFFWGSLRRWWSRWKQKLRLETQLLFVATLVVSLVVSSF
TFWAVSTVQQDARFNEARFGRDLGLLLAANVAPLIAEDRIGEVAQLSRQY
FESTSSIRYLLYADPEGNIYYGIPFSNQEVKTSLSLTRRIQLPDNRPPAE
GQPLVRTHLTPAGRVTDIFVGIYHQGRFLGTLGLGINPNPALVRSTQLAR
EVAIGVFLAVWVLAILGAVVNALTITYPIKALVKGVQEITKGNFKQRIDL
PFGGELAQLIDSFNEMAERLQSYEEQNIEELAAAKAKLETLVFSIVDAAI
LLDAEFRVLLLNPAASRMFGWEGEPVLGKPLPELLPEDLRQQLARPLMQI
ARGDQEAEEIRVNLSGPTKRVIRILLSPVSDPRRQNLKGIVMTVQDITRE
VELNEAKAQFISNISHELRTPLFSIKSFIETLYEYGEQMSPEERLDYLEI
ANRETDRLTRLVNDVLDLSRLESGKQYHFEAVDIAAVIEQTLRTHHLQAR
DKGIQLRKFVDPDLPLVWGNYDLLLQVMTNLLGNALKFTPSGGLVTVHAH
PVVQADGSPQAVRVAVADTGIGIAPEDQERIFDRFFRVENRVHTLEGTGL
GLAIVRNILEKHHTRICLESKLEQGSTFWFDLHLYTENGPLEFAAQPGET
DPPSCRWREDSRHTHQS
>CYA_0212 protein phosphatase 2C family protein
MRRYACATDPGKVRSSNQDAYYCDPEGRYFIVADGMGGHAAGATASLLAV
EVIRECLERGWQTVPAPKLLSEAIEAANEAILKDQRENPERADMGTTVVV
ALVDPNNNCWSAHIGDSRLYRLRGSEMQQMTEDHTLVARSVRQGELTQAQ
ARMHPWRHILERCLGRPDAGPPAVQPITMRPGDRLLLCSDGLTEELDDEV
IAEYCLKVEDLDQLACQLVEAAKERGGRDNITVVIAEYA
>CYA_0840 sensor histidine kinase
MAPDPLTGLPESALYPLPKDRDFTALSGKFTPAQHRINLQVTSAPPHLEI
QIGNTGIIIPPAEQKRVFEKFYRVPSSDPRRRGGTGLGLALVQQRVNLLQ
GKIYLNSEADHTCFTLRLPRLLSVSGQQQSAQPRA
>CYA_2885 response regulator
MLAKGSILVVEDEKIIAKDIANVLKKFGYAVPAIASSGEEAIRWLEEMSV
DLVLMDIVLKGDLDGIEAAKRIAERFNIPVVHLTAYADEDTLSRVKETQP
FGYIIKPFKERELYTAIEIALHNHRQSLESRRLEEKRLEELRQKLQQLQQ
FAEVKGTLFKKFLQDLSEPLSNLKFALGLLKEAESEQKRQHYLRVLEEEF
HRELELIHQTSNLEDLLNLENVGLLSQFSLLRAQEPSRSRLLEGEKPPAT
ATATLSEPPAAAACPAPPPSPAAAEEAITVPRATLRPLNQTQLAERLGVV
VSAITYWKFKSGFPEWSRSRDPDGIAWHYSPDSKRFSPVP
>CYA_1130 EAL domain protein
MSCLDCPALPTFLQEAGRLFLWLPTPHTHRKIWQALEAKTEVPVQLLEDL
GLVVAIAQGALKKTLETMAEVLSQEEMQASRALFLPGDRDPCWQDCARVE
SLLQLFHRTQAELLLELLKENRLTTYFQPIVRARDPAWVVGHEALVRGLD
REGKVIGPDLLFATAREAGLLYHLDLAARRTAIAAATQHRLEGDLFINFS
PTAIYDPAFCLRSTVWAISRAGIPPERVVFEVNESDRSPDLDHLQWILRF
YRQAGFRVALDDLGAGYGSLNLLHRLQPDVIKLDRELIRGVDGDPYKAVI
AQKVLELAQELGIVTLAEGIETAEELQWVRDHGVDLVQGFFIARPQPVPP
RLGSIG
>CYA_2618 response regulator
MPAQVPCIWVIDDDPVNRRYIGEVLKSSNYRVESWESGQLAWEHLQTLDE
SEWPDLIICDWVMPGLSGVELCRRLKNLPAGQFIYFILLTARSEVEDRVQ
GLDAGADEFIAKPIDPEELRARVRAGLRLQRLTQALAQANRQLRARNELL
ESLSLTDPLTGALNRRALDQALPHLLKQVGPREQARYRYLCLLMMDVDYF
KQVNDTYGHYIGDCVLQAIVGRLHNQLRPSSLLYRYGGEEFVCVTPGLNP
ARCHRYAESLRRAIASRPIEVAPQRSLPVTISIGGIVLSEDGPLAPEAAL
QKADEALYQAKQAGRNRVHLFLPPPPEHDSSQ
>CYA_0647 response regulator
MATVLLVEDDPINARVFDKVLRRRGGFEVFHSQDVEEILRLAQAHEVDVI
LLDVSLSQSTFRGEAVDGIRIAQLLKGDPKSSSIPIILVTAHAMRGDREA
FLAQSGANGYIAKPVVDHEEMVNQVRRVLAQAQQG
>CYA_1882 serine/threonine protein kinase
MPNCYCLNPDCLRPENPPAASTCAFCGQPLLLRNRYRAFKRLGQGGFGAT
FLARDEDMPSKPWRVIKQLRPAENSPQLARLAEELFNREAEVLERLGEHS
QIPKLYAHFQEGGKFYLVQEFIEGITLAQEMRRNGPFSEEQARQVMQEVL
LILSYVHSHNTVHRDIKPANLIRRKEDGRLVLIDFGAVKQLGPGHTLSEE
GTAIRSLGFSPPEQMAGQAVGPASDLYALAATCLNLMTLESPAKFYDHNT
GQWDWSDRLQLSPEFDAILRRMLHPVISQRFATATEALRALQGIPVQEGP
PSSPVILPPSPLTAGSSPLLISDHWTRRRSTSPPPARTDGFSPTPLPRPG
AGDMLPLGSVPTGWGSTTGFTQLGQASRITGGGQIKPATPPRIPSLAGAD
LRGKSFANQNLAGYDLRCADLRGADFSGANLQGADLRGIRFNTPQPRWLR
FLSRLLGSAKTLGEILAGLGGLLGAGSLAFLLVHLATRNVVYALGAAGMA
LVVAGSVLWSAGGRTSLPRQAEEKGKRFTSFYKADLRGAQMDRKLREFAR
RQGAILS
>CYA_1541 transcriptional regulator, Crp/Fnr family
MPETMPGHFAAGLPTRERQLLEDLYRGRSLSPYSPGQVIPLFPEEWVIVC
RGVVQLTTLYPNGGEALLGFAGPSMPLGSPLTMLDPYQAKALTAVDVLRL
PAAEVEASATLSQGLLKQLVRRLRQTEALLALAGRRRVEDRLRQLLSLLA
VELGSPMATGVRLQVRLTHQDLANAIGTTRVTITRLLNRFRQQGWIAVDK
NRHLIIKLAQTP
>CYA_2162 response regulator
MNCPPVCTEVSAHLLNAEVSFTGVVRYFSALDKGEGLGTWSLVFHQGRLG
FAHHSLEPLERLDRHLRRLSHQVFSLTRQNCLRIHRQVEALLAQETGPLP
ADLLGLSWMVTEQLLPWEAARRLNAWIGEEVLQNLLLVPGGFQQEIIPLD
NVPTLGQWDGGSLLDLIQKRLRAWQSLGPEITSPYQRPYFASRAQAERLP
AEQQERLGRLLKGFSFRQLSALLDQDDLQIARRLHPLVKAGILVLRDPQP
PFDRLPKTYSAKLETESQPSETPTVPLHLANELADLGPSPQASKTWIVAC
IDDSEAMLSELQRLLEGHNLVIHAISDSLKALMKLTTLKPDLILLDVGMP
NVDGYQLCSLIRKSSVLKDVPVVMVTGHKGLIDRVKARLAGATDYLTKPF
RQEELLQMVFRYLS
>CYA_2333 protein kinase domain/TPR repeat protein
MDDKVKPGAILRGRYEILGLLGQGGFGVTYKAVDRDTFNTPCVVKRLRPL
STDPYTLATARKLLEREAKVLNRLNNYDRVPRLLAHFEQDQEFYLVEEFI
AGHDLTHELVDGKPLSEPEVVQLLWEVLEILRHVHAHQILHRDIKPANLM
RRDFDGKLVLIDFGAVKEVGRLVSHAPGQTQVATVIGSVGYIAPEQLGGK
PQPCSDIYSVGVLAIQALTGRPPTKIRDDPRTGQLLWRDLVPVSKELAEI
VDRMICPRWQERFQSAAEVMEALRPLLPTPPEGVAPALSQLSVDQLLAMR
LVTRGQEKARQGDLQGAIADYTLAIQLDPQNGRAHSQRGSVRYKTGDWAG
AVEDFTRAIQLGGGDARTYFNRGIARYRLGNYEGAVADYTHALRLDPHWA
LAYYSRGNAYRQLDQPQQAIEDYSRALELNPEEVRAYFNRGVVRGQLGDA
QGAVADFSEVLRRDPQDTEAYFNRGVARAQLLDFQGAIEDYTQALQLDPG
HPKACYRRGLARQALGDLQGAITDFSQAIALRATQGEEPSGAVAAAQAEL
YLQRAVAYLSNNALEAALADCEQALRLNPALALAHFYRGLARQGLGDPAG
ALADFNRALELDPRLAKAYLKRGIAHLELGHLEAALADLNQAIALDASDV
GARSSRGQVHRLLGDPLAALQDYTAALERDPRNPQLYFDRGQIYFEQEDW
AAACEDFSQALQWAGQPGGPHGLDLMARIHLYRGMARQRLEDWQGALADF
TALIQEQPQASQGFALRAAVHLVLGDEEAALADLDRAIGCNRDWGLADAA
LAYRQRGDLHRQANRLQQAIADYTQVLALNPQERHALLWRALLWDQAGEI
ERALADYTQLLQLEPDPQTRLWALNNRGWAYAQQGDFAAAIRDYTQVLER
DPSHIKAHCNRALARAAVGDWQGACQDFQTALQLQGYEGRLWEEETHSLG
SS
>CYA_2336 response regulator
MQSAQAERPVRVGIPEIAPFGEQEPAGHLLIVDDQPHSRLLLGDLLESIG
YRVSEAENGQQALQMLPSLQPDLVLLDVMMPGLDGFEVCRRIKADEETRL
IPVVLIAAASDRKNRLRGIEAGADDFLSKPFDESELLARVRSLVRQKHLN
EDLDHAAQVLFAIARSVESRDPTTGDHCERLAALAKSFGEFLQLPRPLIK
VLAWGGYLHDIGKVGIPDAILGKTGKHTPEEWEVMKSHVLIGEEICRPLR
TMRDVLPLIRHHHERWDGSGYPDGLKGEAIPLVARVFQIVDIYDALTSER
PYKRAFTVQEAMDILRQETTKGWRDPYLVERFFEFLRSRLPHLE
>CYA_2737 response regulator
MQGRLQEIDIRSILQLIELGQRTGELFVEARPSIYWFVFFLNGRIIYASE
TEGHIARLKDYLRRFKLEAALDEVQIPPKAAVNAPEYNRLWSLLENHKLN
PSQGKQILLGMVREVLFDLLSLHQGSFIFEAGSPLAPQLTTFPVTPLLAE
MVTQVQEWKKLHPYIQDPNQAPTIVNPLPLQQTLPAPVFKALSEWSDGKT
SIRQMGRYLGRDTLVVAKAIYPYVRQGAIHLSDPVLIIEPQRTRPLKPSD
KPAHILCIDDSMAIQKTVEFILQNEGYQVTTIGNPLKALGQVFLLNPDMI
LCDVAMPKLDGYELCAMLRKSSQFRETPMIMLTGKDGFTDRLKARMAGAN
EFLSKPFSERELLTVVESYVGPPPKRGGGE
>CYA_1284 polar amino amino acid ABC transporter (PAAT) family, amino acid-binding protein
MNWIKHLNGLAPLAGALALSMGLQSLPAWAQLGPLTDRIKARGELICGVN
NQLPGFGNLDDQGKYVGFDIDICRAVAAALFGDPDKVRYVYLTAANRQSA
IQSGEVDMISRNTTWTLTRDREWAVTFGPTTYYDGQGFMVRKSLGVEKLE
DLNGATICVIAGTTTELNLADTFRARGIAFTPVTFDGDDSSFNAYEEGRC
DAITSDQSALISRRASLASPDDHVILPEVISKEPLGPLVPHGDESFSDIM
NWTVYALFYAEEKGITSANVDEFLKSEDPDIRRFLGQEGNLGELLGLKPD
WVVNVIKAVGNYGEIFNRHLTPLGVPRGLNQPYTKGGIQYAPPFR
>CYA_0502 transporter, monovalent cation:proton antiporter-2 (CPA2) family/universal stress family protein
MGFFVGQILGRLGMPPLVGMILVGILLQEVLSPELLAAAGDLRLVAVTII
LMKAGLGLDREKLAQQGSVALRLGFLPAACEALAVALLSRWILGLDWATG
LLLGCVIGAESPAVIVPGMLRLKSLGWGVAKGIPDAILTGSALSDVLLLL
GFSLLLSFLGQGSPEGLRLFGLELSPLQWLPFQVGMEILLGVVIGYLGAR
LLVALLVQQNWTRNSTQEVLLAACLALGLVLASQVWPYFSGYPAVMALGF
FLVQLDGPLARRLRLGFDALWTVAEIVLFVLLGASLDLQVLGSLLLPGLL
LLTLSLLLGRGLGWWLSTVGSNWNWRERLFLLPGNMAKATVQAAIGGIPL
AQGIPGGETILAIAALSILATAPLGAWLTQVFAPRLLEKGEVDPTKVGSQ
GKVSFLAAVDTSPLAEAVLRKAADLARRLDGEVIVLHVTDEPQGKRVEQL
RQLAQRLLADIRHEFCLASGPLAETIVGLAQERQVTDIVMGKRGQRGWEQ
VLLGSTSQAVLETSPIPVILVEEEEFGKARIDTPTA
>CYA_0938 FHA domain protein
MVDSAPSPPSAQQHILVVEDRDGRRSQVLTSAKYFIGRDLANDICLNSQY
ASRYHAMLLRVPAEKEGEYYYRILDGDLEGRPSTNGLLINGQKISTHQLK
SGDVISFGPDAKATYIVKTS
>CYA_2298 response regulator
MSTLLAEDDTLYRQHVHSLLMQHLPQFGPVYMASNGREALELYRQHRPNF
LLLDIRMPEMSGIEVARQVWSEQPSTRIIFWSHFADEVYVRELHKIVPPQ
TVYGYLLKNCSDEKLVSAIQAVVQDEQCVIDREVRGVDSRSQNKITGLSD
AEYEVLIDIALGLTDQAIAARRFLSRRGVTNRLRNLYDKLEVSNDQIESE
EWGTTFSLRARAIRLAFKRGLINAQLLDEEEVHLDHWLSRYRLEPLD
>CYA_1033 DNA-binding response regulator
MQATLSMTSQLPEVQVKEAPPLLETLLVVDDEDAIRETVAVALEEQGYQV
LQAADGRQALELVHTAERLDLMILDLMLPGLNGLDLCRLLRREGNTIPIL
MLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRRQQSHASE
ATVLRYGDICMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQ
LLERIWGSDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVRGFGYRFG
>CYA_1349 sensory box histidine kinase
MASTRYRLVPVGPGDSGFYPEHLYLALEATQLGYWQLDLRSGELSSSPQC
KAKYGRDPGEEFTLEMFFERVHPEDRPRVKEALQSAGRRATEGDPNFSVE
YRVYQADGQMRWQLSQGVVLLGPKGDPSHVVGVTLDITERKELEAALAER
ECHYRQMLEALPDMLFRLDRQGRCLEIKPPSNFPTQYPPDHYLGKTPEEL
FPPGEAQAVRQHLELAFATQQIQEMEYCWTECSSEPQYRQARFVPFENEQ
MLVMVRDITARKQAELKLQQQVQREKLFNRLMQAINGSLDLPTLFEVAVQ
EVGQVLQAARVTLYQYLPEERVWVAIVGHVRSPEVPSFLHLRIPDDPEIP
AIQQLKRLQVFHVRDPQQVADSFALQERQDHQLGPWLGIPVACQGKLWGA
LALGRLISEPDWQAEEIKLAIAIGDHLGVAIHQAELYQKLQQTNAELDYQ
VRVRNGQLQQAYEDEALLQLITEEIRSSLDEQKILETVAQELALRLGLSG
CRIALHDPERQASVLAVDYRPDQGIRRFPLEIPFADFAEVLQQLRGGQFC
YFSNLGHPCWPGYERHTLLVVPICDLRDRTGQQKDSLLLGNICGSRPPGQ
VFGEREQRLMQRVAGQCAIAIRQARLYQTVQQQVQQLQELNHLKDEFLHM
VSHEMRTPLTNMKLAIGFLSRANLTEREQRYLQILEMETNRELDLINELL
ELQAIEAGNRDLKLTWLSPQEWIPNLSEPFRLRAAQQGQQFQVEWDPDLL
PLCTDESLLSRVVGELLNNACKYTPAGESICLRFSQSHQQGRPGWLIEVG
NTGVEIPPEALPRLFEKFYRIPQLDRRKAGGTGLGLALAKKAMEILEGSL
TVASHSGQVIFRVWCPSQSRTPQAGIPGEST
>CYA_0966 transcriptional regulator, Crp/Fnr family
MTLVSITSAAEAQEWRELRQWAEEHYRSRTFPKDVRIPTRPGLVYIPQEG
VVRLVSQTPERREVFVGFITPGVPFELSNPERFELKACTHVDRTTVMWFY
WQDLEQWPYLHQKIQESFRQQLQRKLLWLGNLGQRRAIDRLKGFLTLLID
EYGQPCEQGMYLPWPLTHAQIGDAIGATRVTVTRLLGSLRSKGFVQVLDQ
NLICIPNGVKLQPTPKKAASA
>CYA_2314 hypothetical protein
MQSKDRFDQIDFRLDRLVGAVLTLAETVSFVKDDLTHLKAIVQQQVLISQ
EQSTWLGELKAICQQQADTARRQSETIERIIAHLLPAQDPKS
>CYA_0902 anti-anti-sigma factor family protein
MVTKYLEEGSPNLILDLTGIDFIDSSGVGALVQLAKLAQSRGGIFQVVSN
PRITQTVKLVRLEKFLSLRNSLQEALDHLAAEGGGRPEPDTRPDAAEARP
EGPDGQAS
>CYA_1657 sensory box histidine kinase/response regulator
MHRELWAVGKTVGLVDPPGLAFWLLGSLFLALLLLGVSLGESQLLSVFRG
ILGSLSRRFPFQPPRGTPSPEARFRAALEASLDAIYLLEAVRDPVTREIL
DFVFVDVNAKGEELISLQRRQIIGQRLCELLPINRWGGFFEKYKRVVETG
IPLEEEFPISGQPGLKASWIHHQVVPVGDGILITSRDISEQVQIKQALEA
SELRYRALYEAIPDLIFEIDPEGLILNCKPSPYVPTQHPPEFCVGRRAQD
VFPSSFGEQYQLLAGRALSTQTPQYLEYEMVLPAAAANESEPAIRRYQKA
CVVAYGRDRVYVLVRDITKRKEAELALREMEATQRAILQAIPDLILRLNS
QGICLSSIPGGDVHLCCPAERHLGRSLQEILPPALAEQRLFYVQQALATQ
TQQRYEYSIEVQGEVRHEEARIVPLNSQEVLVIVRDITEAKQAELALKAA
EQLQRAILEAIPDLIFRLDSQGICLSFISGGEVLLYGSPDTYVGRSLQEL
LPPELAERRLFFVQQAIATQTRQRYDQSIEIEGETRHEEVRIVPLNPQEV
VVIVRDVTDRVRSQQAVQESEQKFRALFENAAVAILIRHAETGEILEANS
QAIAAYGFSSLEELRAFDACEQSPYRRALQGREFALQPYLEQARQQGSAR
FEWQWQRQDGRVVWEDVFVQPLVLRGIPCWVFTAVDITARKSAEAELEQF
FSVALDLLCIADAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHPEDVP
ATQAAMQQLVEEKRLDHFVNRYRTQDGSYRFIEWRASLAGSLVYAAGRDI
TLAKQAQEQMKAAMEAAEAANRAKSEFLATISHEIRTPINAIMGMAGLLL
DTSLDAQQRDWVQTIRYGSEVLLSLINDILDFSKIESQKLELEETPFSLP
QLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRLRQILANLLSN
AIKFTPQGEVVVTVEAQEQDPQAQVQWVSFQVQDTGIGIPPEKQDRLFKP
FSQVDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQPGQGSTFGFRIP
LKLPDAALWATPTPDPALAGQRVLLVEDNASQRQLLARLLQSWGMQVTAC
STVAEAQAIAKAQTFELALVDTSLPDGDGLALARALQQEQPPLRLVLLVD
RRAALASAGSLPALGKPVRASQLRALLGQEKVPAAASHLKPQLPLASRCP
LRILVAEDNPVNQKVIRLMLERLGYQPDIVANGLEALQALQLRAYDLVLM
DLHMPELDGLAATRRIRSELPPERQPRILALTADAFLESRAAAEAAGVDG
YLTKPLQPAVLERALQEAALDFVGDPKPEPALDAAALASLQSMLGSPEDW
QEMIQTYRQDSQALLGSLRQALESRDVQTVAQLAHRLKGSSRTLGAKLLA
QRCQALEKLVRKPSANSVNWDTIEQAFQRLEAEYQRVILELSASAPGPLL
SSPGAHAEA
>CYA_1392 DNA-binding response regulator
MEAQRKERILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQD
PDLVVLDVMMPKLDGYGVCQELRKESDIPIIMLTALGDVADRITGLELGA
DDYVVKPFSPKELEARIRSVLRRVARSSHEGIPSSGVIQVGDLRIDTNKR
QVYKRDERIRLTGMEFSLLELLVSRSGEPFSRAEILQEVWGYTPERHVDT
RVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRIVPKGEE
>CYA_2556 universal stress protein family
MFERLLFPIDNSRETSHALPLVADIAQRYKSQVYLLSVLDSTDLSPEQAE
QARQSIHNLLKQAEAGLQQIGIQNVKSEYREGKVPFVICDVADELEISLI
VMGSRGISLAEGRKNESVSHRVIDLSPCPVLVVP
>CYA_2866 conserved hypothetical protein
MTIKPLELLQVLISRTEFTDEDRKILQQSADWGSSIATEMSDAFYGYLDR
DAEMAAVIAKHNRQRLGQTFTDWFKEMFTGMDNWGPQYAERRWKIGLVHV
RVGIGPQHVVPAMATVVQEVSRRLVKEGKPEQLRMSLSKVCMIDLSFIEQ
AYLEVAYNAVQQETGMSEALFKRLIATGASNLAS
>CYA_2714 GAF domain/histidine kinase domain protein
MRCCSGGAGLWGGWRRCRRWLPEFRLLELTFLLLAAMPLQAFVDPDSTFL
IQLQAANQIVQELVLLSSQEASEAAEPEVWEQGLLKLAQTLVHQMVSRLG
VASARLWFFDPQEGCFRSVAHAGLLSPAHAQIERIYPDDSPMGRVVQQGL
PLLSNNPDQEVWMPAPEWVRANGLRGFVAYPINRGEERLGALALLSRTPL
EASFVEVVKFLCSYTASAIINAKLLERSRRQAVREALLNRITSTVHRFLQ
WDQIVSTALKELQHAFLSKGVKGLSRCCFYSINPDQETVQVTHEALSPGL
APSLGQVYRIQDFGSLCERLQEGQVVQIALHMQPAQEHLLPPQGLAAFQA
LQARSAVLIPLQAVGSAGAGLGEAGGRDPQTGRSDLAAAPGGMIGLLGVY
LTTPHPWQPEEIDLLRSVAYQLAIALTRSSLFERAHRQAERLALLHSITA
AIRSSLEPTTLFHAITQQIGAAFQADVCILALWQPEQEMLHPVGIYAPEL
TPAVRVSGTEPLLDAPLTGSLQKPWPEPGIPPELSETVQAKLRLAASLLT
TLKEPVVVPDDLKPQRQGSGLLWVPLFASDQPQRQQEVLGGIALLRYPHG
GSPWQPEDLELAEAVAEQAGIALQQAQLYEQTRISAQRESLLRQVAQRLS
GTYDPHQVVEIALEGMAEVLQVDRCTFVAPRSGYGPSAQQPAAAPEPLAI
LQEYRRQPGIPSQVGQTLTPELSQLIWVSCYTHLDTLLIPDVQTFPLPLP
TRQTLLQKGIRSLLCVPLVTDANQIAGVLCASIPPLATAGRKPPTADTAP
EAAGFAPADRDLVEALADIAAVALQRASFYEQVRRQEATAAALQGLTEGR
EAESRRLAADLHDQTLADLGALSRQIQELAGDPTLSPAGQAQLRVMSVQL
QETMAELRGIVEDLQPLAMRAFNLGPALRSLLERAAQRSPHPLLTRFDNR
ADGLLSRLSPACQSNIFRIVQEALNNIVKHAGARRIDITIQPKVQAGSGA
EEPSVNPEAPYTHLELKIIDDGRGMPEFNGGIDPDQKPGHGHGLLNMRYR
AELIGATITWRNRRLGSGTVVELQIPLPPPS
>CYA_1331 transcriptional regulator, Crp/Fnr family
MFLFEGFSPEVLEPLARQMLLRSHPVNQAILLQNDWGNAVYFILEGWVKI
RTHDLEGREVTLTILGPGEIFGEMAALDEAPRSSDVIALTATKVCSLSAQ
NFLALLAADAQVAIRLAQLLSRRLRQINRRLQLREASSVARVADILLFLA
ESRGRVGCKGVEIPNLPHRELSSLSGLARETVTRVLSKLEQEELIRRDRQ
RDILCIPQMDALEKLIG
>CYA_0835 conserved domain protein
MLYLARVDKKSLFGQAELQLLAQQAEGGVWAPLRQPERVTSKEAASYNVG
VLLLVELAENRQVQRVEEAAMKLVEMLHSLSQARSLADLAEIESWRQSLT
RQSQELSRREAEMAALQEQLQQWEARLREKLSS
>CYA_1944 RelA/SpoT family protein
MGQPAVAASLEGGFDLNSLDFEVPGWLRALLSGAEDLGDGLRSYTAEEAD
LLRRAFEFAYCLHKGQKRKSGDPYIAHPVAVASLLRELGGDAVTVAAGLL
HDVVEDTEVTLEALEAEFGPEVRLLVEGVTKLSQFNFSSKTEQQAENFRR
MFVAMAKDIRVIVVKLADRLHNMRTLQYLPPHKQKQIAAETMEIFAPLAN
RLGIWHFKWELEDLAFKYLDYEAYRQIQELVNAKRSEREAEIQAFIEELR
KHLIQGGLEHFEISGRPKHLYGIYRKMQQQRKEFHEIYDLLAVRVIVQTV
SECYRVLAVVHNCFRPIPGRFKDYIGLPKANRYQSLHTAVIGLQGRPVEV
QIRTEEMHRVAEYGIAAHWKYKEAGSTPVKPEEERFTWLRQLLEWQNDLK
DDKEYLDTIRENLFESEVYVFTPKGDLLALPQGSCPVDFAYRIHSEIGDH
CAGARVNNKIVPLNTRLRNGDIVQIITHKNAHPSLDWINFVATSSARNRI
RQWFKRCNREQNIARGRDLLERELGKTGFDALLKSERMQKVAEKLNYTSV
DDLLAALGYGEVTPTQVLHRLQEVSKPAVSPPPEEGSLEEAKLLLPRANG
SRGSSRSQSPILGVEGLKHQLAKCCNPLPGDPILGVVTRFKGITIHHRDC
PRVAQVPGERLVPVRWNEEQLRQSTQIYPVELRLEVIDRVGVLRDILSRL
SDQSINVRNARVQTFANRTALIDLCIDVRDKKQLDQVQSQLRQLSDVLVL
RSRHYQNGSR
>CYA_0209 serine/threonine protein kinase
MFTASDPFLGRLLAQRYRLTHLLGQGGMGRVYLAQDLLFGGVEVAVKLLS
QPAMDEQARLRFEREAKACAALGQKSLHIVKVSDYGITADGVPFYVMEYL
NGQTLKDILATGSLPLERFFRLARQIGLGLKAAHEGILLEGQRIQVIHRD
LKPANVIVLADESLGELAKLVDFGIAKLLNTRESLSLTHAYLGTLAYSSP
EQLEGLPLDARSDIYSFGIMLYQMVSGQMPLQPTTESFPGWYQAHHKQRP
LPLEELGLPLALPAGLSDLILSCLAKDPAARPPTVANVLAELERIQARAQ
GSPRGASQAVALQFPAIPSGPLFPSAPPLATAGTLRLAPPTMASENRGSL
LWARLIPFLGGSLLGLALVSWGLGRLLQRPAAPVLSGSRPSPAATELEDE
RPGAEAQPDTAPEVLVPDILGSSAGQDEGATRRDPAPELEPYSGPVLRAF
PLQTSREVVRAALGSPSQQGRGARPNTVYDLYRLGSMNLSLTYDESSLAL
QQIEATVADDVPAPQAEGLLEDMLQAPLPPQLQRELQAVRENRSERVQFR
VGPWSGVVERTPQGHLYMAVWDPPPTVPVAQPRPAPRATPAAAGPRPGQT
LQELLRRARELRGD
>CYA_2394 DNA-binding response regulator
MQPLHILLAEGNPHLRSLLGWHLQQARHRVWEAENIRQAKTLLQQQPVHL
LILDAELSSRAGLQLCRWAHRHCDVLILLLSQQGAEADIIAWLKAGADDY
LTKPLSLPLLDAHIQALTRRLRRSLPPTFLQYGDLKIDLVQRRVTLAGQG
IDLTPQEFSLLMVLIQADGDPLSRQELLERAWPDSTANPRTIDTHILSLR
KKLERDPHQPRLIHTVRQVGYSFGIEPPPPLQQPSRAAGATAPGSGPQQR
RRRAASSVG
>CYA_1549 universal stress protein family
MFKSLLIATDCRDGLQRFGKCLEELYLNGIERVAFVHSVARQDDDIGLPE
DLTPKVQAQQARLHKVLSAVPAGLEVEVLVQAGKAVDLILRGIQTCSSDL
LITGMGIHDLLTEKLFGSTTLELLPKLTIPVMVMRPQLIAAFTLEELRLR
SRHLFRSLLVPFDFEEPRRQLLSRLGQLLPGTSQCQAITLLYVVDPSARR
NQGSPAEELKRRAEADLARLVEPLVEQVKPVQLRALVRVGSPLQEILATA
ADEDMTAIATASPRVGSFWEWSVRSLTGEILRQSWHPVLFFPRGSLAQ
>CYA_0979 BolA/YrbA family protein
MDPREIEALIQAALPGAKVQVEDTVGDGNHFQAVVVAEQFQGLPLIKQHR
LVNEALKPYLQDGRLHALALRTFTPSQWEELRRAAPGSA
>CYA_2569 sensory box histidine kinase
MLFSSIASRMRLPSLASRSIPLQVALLLPLLLAVAGGAGGVSYLSWRAGR
QMALQLAEHLKREVNHRAEENLHRYLQAPLQVNALTEGAVRWGLLPNLAA
PQPPDLEVLEAYFARQLQQFPELSYVGFVSEQGGFITARRHADGSIWTYH
TPGLKPGSVQGRQRDPESGDPTGLTRQLGFVDLRRLSWFPAVLQQEGARR
TWVVSNFFVESPHQRPERLVLRALPLADGEGGVYGSLVAALSAQQLQAFL
EDLQVSLGYPGVSWLLDEEGQVVAGTEELSPHPLLLAVQAQVGSWETAAS
QDLLRLRVDRIRYLAQVTAIQDEGGLSFYFVQGIPEEILLAPVYRSTQQA
ALLGGGLLLGFLGAGILLSEALSRPLRRLTQIAEQFVQTGIPAWPPVDPG
PIWEVQTLAKAWQQAAASQQALLDRLWQQQQQYRAVVEQQTELICRSLPD
SRITYVNPAYLRFFGCSAEETIGRRWVDSLPPQEREAVLQSLAALTPERP
FYRSEREYPGESGQSRWVSWVDQGIFDSQGQLVEILAVGREITEQKRAQQ
QLEALNRELEAQVALRTAKLQQALCFEAVLRSLSGQMVASLNEGEILEEV
VKSLAEALHLSGCHILLTGAGGSGWIPACSFPEEADPVYLNDPELVHLLH
SHAFLEQPWEVHRCCQKEKGGHWVQLLACSLWDKQERLGVLLVERQQEFS
EAERQLAYQVANLCALALRQARLYEAAQAQVKELERLNLLKDDFLSTVSH
ELRTPMANVRMALQMLQIAHNNSEKQQHYFAIALKECNRQIELINDLLDM
QRLAAEKYLLQPEEIFLPRYLRDLVAAAQPLAQSKQQNLQLHLEEGIPPL
EADPTALGRILRELLHNAIKYTAPEGSIHLRVAQEGEGILFVCSNSSEIP
EAELPRIFEKFYRIPQSDRWKHGGTGLGLSLVKQLVEHMGGRISVSSLEG
WTHFRVWLPSAPPAATAKSLEPAGAA
>CYA_0483 GGDEF/FHA domain protein
MGMTFPLGETAVVGRSSQADIQLWDHAVSRQHCRLEREGGTYILTDLGSL
NGTYVNWQRVTRLPLADRDRIQLGNSLLQFAYYDRLEEAFFFQVAAAALY
DPLTGLHNRRFFLEHLQREMAFARRHSFPLHLLYLDLDNFKLINDRWGHL
AGDQALIQVARQLQDQVRQEDLLARMGGDEFVLMVRGVPEAQILQLAKRL
RQAVQSLPLQVGAEVIHLTCSIGVASWLSLSAETSVQSFLEAADQALYQA
KRQGGNREVLL
>CYA_2027 DNA-binding response regulator
MRILLVEDDLEQLEPLQAALAKCGHVVDCASEGETAAWLMEEKAYDLLIL
DWMLPGISGIQLCQQYRRSGGCAPVLMLTAKDATSDIVQGLDAGADDYLV
KPVDLIELLARVRALGRRSPQWQGDSLSLGSLQLHLASLTLERQGRQVQL
SGKEFQLMEYLMRHPHQVLSGGQIEQAVWEWGCEPESNAVAALVRRLRLR
LKEVEAQDWLESVYGQGYRLRIPSPEADP
>CYA_2575 sensor histidine kinase
MTCLFAPGLIQLSPLSRSPLRRRLLEFWRRRFPHSLRTQVALVIASLSFV
PNLVFILSVQWILPGTELSPEGSVLLLLWIPLLAGLSAVVGYVLSSLILR
PLTLLARELGHLETLISQPARWNLLLRPGDPQEALILRQAFAHLLRQIQI
DQLRREAFTATLVHDLKTPLIAFGHLLSALKQEQQLQPEERLALLDRILQ
ENQRNLSLVQRMVEAHRLERGEIELHPRLCDLGSLARRVAERMGSLARER
GIDLRVEGEGWANADEAELERALVNLVDNALRYARQVVVLTISPRQIQVR
DDGPGLPAPLEELAQPYIAQPIHIAGQHYPTGSGGLGLYIAKRILQAHGG
DLCLVETGSQGTTLALVLP
>CYA_0954 anti-anti-sigma factor family protein
MNVSTRLSPKGSLVALVKLPAGQLERALVQKELSQILAKKPKHLLLDLSQ
VTQIDSRGVSALVWARRACAAADCHLKLCGLGEKAKTVLKVTRLDSLFKT
YPSVEAALKDLSDA
>CYA_2405 putative adenylate cyclase
MSVPGEPAATTAPYVILREPDGSQRKYILAGATAWTLGRDEDNAIVLTDP
SVSRQHALLQYLDNNSIYLIDLGSRNGSFVNNRRVSIPTLLQDGDHLTLG
QSQLEFHSGSLASPEPSPAAKLSDTLVLQTRWLISVAVVDVRGYGQLTQQ
LDERLLSQVMGDWFRRGGDIIQQYGGTVDKYIGDAIMAVWFHAPQANEDP
LQAEQVGIELDVKSVLRAMVKLFQMTEQLNGEFPLPSPLRLGAGVNTGSA
IVRQVGNNTRQEYTALGDTVNLAFRIESVTRTLNADLAISHDTYTCLAQQ
LGQAATCFAQQAVQLKGYTHPHQVYYCDVGALQAVLGT
>CYA_2692 FHA domain protein
MQIQLSWEDPITEEQQELIFPLPLALGRELAQLPQEWQGREVARAVFASQ
EISRYHALVYLGEDGQVIYEDRSANGSRINGEKIRQARRVLQGGEVVELG
PYSITVGLVSPRDPNATLLTGTPTLLLEPRTELIRPATQPDTAFEVPPAS
TVVFTPEQLPEVRAGSDFPPPDLFRAEQIALSALKATGLPVEETLYLALG
GGIGSFVWVDTLRIYGVRPEHIRVISIARKPYERYERLLTNCQIPRWKRI
RSGSDSCPDNIWGWPGYALRDAWRSFFSGRLLEAFGFLWQVFSEPLLADT
YTPRAGDVFASMDREAARIGWEQMLCYGHIRAIRKTEDGRYVVAYSATRP
GHTDHRFMVAKYLHLATGYPAIKLLNDLQEFREKTGDLRSVVHGYEPHDH
VYEQLEKQGGTVLIRGFGIVASQVMERLYEARKVNPRISVVHLSRAPKSG
NRFGRAKRAVENHWEFQPFNWPKATWGGVLRAKLEAATPLERRELLEAWG
GTTTASRRKWRRIVRQGLREGWYSIVFGKVESVVPGDKGKPVTYIRGTHN
NTQLKVEADFVIDCTGLVSDPMTNPLLNDLITHYNLPLNPHGRLHVSNDF
ELVEMRNRDGRMYAAGIITLGGPYAPVDTFLGLQYCAHRSVEHLARLRAP
GVKGLEGIRSLWQWCKWALNISP
>CYA_1214 DNA-binding response regulator, LuxR family
MDNPKRLLLIDDDPNLILLVKDYLEFRGYEVVAASNGLEGLEAMRHFTPD
LIICDVMMPEMDGYTFVQTIRSNSATDWIPVIFLSARGQTADRVRGLNTG
ADVYLVKPFEPEELVAQVESVLKHTERLLQMQNAVIQPVIKLDREIELTP
TEAKVIQYVARGMSNREIAEVMGVSQRTVESHVSNMLSKTGLHNRTELAR
WALESGLGRG
>CYA_1910 response regulator
MFEVESRTAPLKFLIVEDHPEVAQNNCEWLQRLAADAQCITVSNPMDAIL
RLQREQPDLVVADLLYGQTSGEQSAEPGLEFLRHIFENYPTLNVMVYSSE
PLLLTPLVGLISKHQGGFAAVNKMERRSVFLEGAKSALNGELRMPRELRG
LTKLTEREIEVLNLLCKEALTDQAIADRIHTSKKTVQNCIQRLKEKLDIF
GSEDEINARVAMCMAAVQKKLIQW
>CYA_0373 serine/threonine protein kinase
MNQRLIGQLIGNRYRLTHHISEGGYGNVFEAVDTQLNDEPVAVKLLRPPP
PDMEPEYYQQLQQRFLDEARVSALLGEHPNIVQVRSYGLYQNQPYLVMEY
LKAKPYTGQGLDYVLAREGPLHPERVVNLALQICSALHHAHNFHMDLGKH
SIRGVIHRDIKPSNIFVQKGPDGKERVKLLDFGISKLMGETSRGLTQTGY
FLGTMVYASPEQMRGEKLDGRSDIYSLGVVLYELLTGALPFEPETDTLQG
WYHVHNFQKPRPFQDHPLPHPIPEALEKVVLRCLEKDPALRPATMEELAQ
QLRAVYGDKIPPPPQKAPLQRIPAGFGQQATQQSRAAPVSEAEEEELQRA
VRLIEAGEYKMAVHLLNKLIQSAPNEARYYLYRGLAHQRQGHWGLAQMDY
QGVLRLEPGNPSAEQGLREVEQQVGQEQVSPHQKPTLPTSGKPRQRKGLA
LGWLLANWAAAGIGYLGLGAAAPLLAALGSLQGAVAGAGLGLGMGLLQWA
VLRRQVSWRWVAATLLATALGWVAADTLEAGMATFAFDPRDPWLQNALQA
MASPLRGLLVGLGVGGLQGILLSRHGKVAWAWVLAAGVEGGGAALLIHWL
LAGSALSRWLLLLAGLLAHTRPLSALVLANLNWRRIPAVQNCQQAKQQAA
>CYA_2285 pspA/IM30 family protein
MGLFDRVSRIIRANLNALISSAEDPEKILNQTIQDMSEDHYQMRQAVAQA
IAAQKRIERQYEQAQQNVDEWQRRAELALRNNNEALAREALVRKKTFAET
AQSLKRQLDEQTKQVEVLKANMTKLESKIAEAKTKKDMLIARARAAKASQ
QINQVIGRVDATSAFAAFERMEEKVNALEAQSAAVAELAVDNLERQFAAL
EAGGSDIDHELMMLKAAMGGQLPAGEQKALPRDQSAATSESEVDVELENL
RREIDRL
>CYA_1201 PhoH family protein
MHDTSAATDLEIISLSSPRQAMSLAGIQEANLKWISRSSGASVTLRGQDL
YLKGTPQQRQQVRQWLELLKPLWQTGHPVTVIDAEQAFRALSGQEATAYQ
QAQAGVLARTRKGELIRPKTPRQQEYVQAIRTHDLCFGIGPAGTGKTYLA
AVVAITALQNREYERLILTRPAVEAGEKLGFLPGDLVEKVDPYLRPLYDA
LFEFIDPAKLPQLMAQGVIEVVPLAYMRGRTLSNAFIILDEAQNTTPEQM
KMALTRLGFRSRMVVTGDLTQTDLGKHRLSGLAAAERILAGVEGVAFCYF
DQRDVVRHPLVQRIVDAYARYESQQ
>CYA_2699 DNA-binding response regulator
MPEPESSSAHILVIEDEAKLARFLETELAYRGYRVSVVGDGTVALAAARD
QNPDLVLLDWMLPGISGLEVCRQLRLTGNRVPVVLMTASDEVADRVAGLD
AGADDYVVKPFSLQELLARIRIYLQPPKGSGDSRLVFMDLTLDPVTRQAS
RGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGYDFTGDSNIIEV
YIRYLRLKIEGPGEKRLIQTVRGVGYVLRE
>CYA_0916 sensor histidine kinase
MGVLQPDLIFYTQDRQQRFWSFYWEGAENYAIYPQQILSGQQSWEVANAE
EYEAKLRQVFASGDPLQHQCQVISPRYKLHLHLCLNPVRDMEGEVVAVSV
VGKVLGATPFNLAGGAGSPPAQRHPLLTEPVPGITAQLLRNIGHSLGIRE
LCQQTVEQLGQLFGADRCLLALYEMGQDSLTVNAEYRRNPGDPSLLNQTL
RLADHPPLLQALRQEEPVVMGRHLAIAMSYRGYANSLLWLEVLPPNEAPL
WQAGHLQVLQSIATYLGTAIAHAILLDQSRQLATRLQLANQTLRQKNKEL
EQARAQAESANQLKSQFLANTSHELRTPLNGIIGFIRLVLDGMAESREEE
LDFLQEAYRSALHLLALINDVLDIAKIEAGKMQLQFEPCDLRALFKDVEA
KTGLQAKQKGLQLSFHLPPTPDRIWLYGDYQRLLQVMLNLVGNAIKFTPK
GSVTVRADLLPGDPGMARIRVIDTGIGVSLEKQQKLFQAFTQVDGSTTRQ
YGGTGLGLAISQRLVEAMGGEINFYSLGEGLGSTVTFTVPLYRQPLPGGE
ASPAQEGPPEATNPNLMPYPAQC
>CYA_2156 putative methyl-accepting chemotaxis protein, truncation
MGNLGALEQKAVAAQERERSEALQRELLQLISEVTEASRGDLTVRAQLTA
RQVGIMADFFNVIIESLRDIVIQVQQAAGQVNQSIGRDEAAIRELAEAAL
RQATQIEETLRSVEQMTLSIEEVADKAQQAATVAESAAATAINSSLTMDR
TVQNILQLRETVAETAKKVKRLGESSQQISKVVSLINQIALKTNLLAVNA
SIEAARAGEEGRGFAVVAEEVGALAAQSAEATREIERIVEGIQRETGEVV
QAMETSTGQVVEGTRLVEAAKQSLGQIVEVSRQVNQLFQAIARSTDAQAD
ASQTVRQLMQQIANIAAQTAAASQQVANSLQATVAVARQLQTSVSTFKVG
EAV
>CYA_2773 sensor histidine kinase
MTSTRPRSRQSRQSRTSLLSDLLEALPHLRPQLYFKSSLVALSHAIEDQV
LQGQGSPWVFANFQKERYYRQEARRYRRIGAVAQDVFVLAAPDGAQADLP
PDFIPLDPEDPLAQEWHLIVIDAHYATCLVCRERPWQGSDMDAARQFDGI
WSFDRSVTAQAALALLPKILGYRPDLAPRLEPVRQYLEGAPQDADSQLNP
GPFTERLITYLQVGQYKLQRAYRTIQAQERKEHLINRISSAIRQSLHPGD
ILTIAVQELGQAAKVGRCLIYRYDGQVPAVQIDHEYHTLTMGSLKGSLWP
VPSNPFLQEAMASAQLVCCEDTQKDPRLQQVPELWQAAQIRAWVAMPILY
QGRLLGLLELHHQHPRRWQLATLELAEAIANQVGVALLQAEAYQHLEELN
RQLQALDRAKSELIAVIGHELRTPLSTIQVCLESLAGDPDMPLERRQEML
NAALQDAGRLRELVQDFLTLSKLESGRVRWHIEPLSAQECVELALSNVKA
RRRHEELPTIEQALPKRLPMVRADGEWLVEVLRKLLDNACKFTPPSGRIW
IRAEVEPPAGEPGEAMVRFTVADSGRGIEPERLQAIFERFYQAEGSLRRS
VGGTGLGLAICRLIVEAMGGRIWAESPGINQGSAFHFTLPIANPRTQTQP
SMAA
>CYA_2160 CheW domain protein
MAVAFSPHSPTSTRTGELYLHLQLGVDCRALLPMAFAQEALIVGPHHFTL
LPNQPAWVLGLFNYRNRILWGLDLPQFLGLEPLDFGQPEHHLVVMRPEFG
GSASPVRTGLGLATQHVKGVARVPAEEIQPLTKAQAAQNNFRLENFYDSC
KGLVLEGDEPLWVLDPLAIVQKLNSVDSSANP
>CYA_0850 FHA domain protein
MTTPPRRPTLNHVLIVKDRHGPKAYWLTAELYSLGRDPSNSIRIDSQYVS
RHHAILVKTESPSSPDGFTYQIIDGDIHGTPSTNGLYIRGERVEFRDLED
GDEIQFGNDATATYSLQAQDLDRILSSFENTQIVGL
>CYA_0093 response regulator
MTAKTVLVIDDSIMIRKMVASILADQFQVLEAKDGLAGLEAAKKHHPDLI
LLDFVMPKMDGYDTLQAIRQEESLKNTPVIIMSGMKEQVTARVPEPFVDF
DFIEKPFEAEALLARIQKALQVAPAAAAEPGSETNTQLLLNKLTAIETLL
IQGTENLIQREVVTRLSDLNQRLERQESHSANLEEQIRKLTSEVERHSQG
LALIVKELKHIRKLLGGS
>CYA_2682 conserved hypothetical protein
MMRRWPNLLLIAILTLGLWLGSLPVQAAAALPRELQQLEQHVERLQSLVD
AEDWLEIRSYIHGPMGLTRKTLTSLANTLPQQQKREMLRLAKEMGRSLEE
LDFAAKAYDQPEVEAAQAKVRKTLQELRALFS
>CYA_0794 sensor histidine kinase
MGSKGSVNSRRFLSLMEALWAALPLPEWLPGAGERSWQQTVAALLQLWQE
VGQFGVVIGGPVSWWPPWVVQDPLPQLPLPMDALHLPRHSWEPAREPPWL
FSPDFSPESILTPGQTVIPLLPRDPLVEEPFLLLLTPVFSAVAAQGHHPH
TRQRGMMVSFEPEVIRRAWQSLEQRVQQGRPDRLAAWQELARHYPLMQPH
VRVLARFSSFLLLGNLAEFGSPPARLPPARAEQEAAAVPPPPPAARQIPA
SSSSASSPAPEPPAHGRSSAPQAEPEQAGSLSEAELLRALIHEIQTPLST
IRTLVSLILKRRDLPPRVREYVEKIDRECTEQINRFGLFFQATETVMPAA
TPGEGRRLQLEPIALVDLVRQNLPRWQEQVERRGSRLELEIPAELPDVVS
DPKALEAVLFGIIDRLARSTPAGSGIRAQLLSAGELVKLQFQVNTPEGSD
TPSLELKSPQPIGQLLVVQPDTGAISLSLPVARTLFRALGGYLTVRHRAR
QGEILNIYLPRQL
>CYA_2741 putative methyl-accepting chemotaxis protein
MVSSANNQRDFTEAMVAFWQGDYVEAVRLFNQVAAAQPQDTAVKLLLASA
QKQAGQLLEARHTYDTILKTASDPEELESARRGLEELLQMAPELADVPSP
AQEDKLQPQGEFPPQPEEADPFPQFEFEAMREQEADPFAQDLFSMRSDSF
AADEMTFGEEESFADPFETRLEMEPADPFASSHPLPANPQVTPPAVPGET
ALRAGREQPQTDPVVDDDFAFLSEFDRQHLQDLDSDSITQLAGDAAFPEE
MGFSLPTFGEEEVGSLDEGLPTELATPMSEPIPAPEEDTAGPGPALFELN
ELDSLDRELAGMEGGEVPVFSPDEGETQEAGGTARSSPTISMPLPGGQGA
GMFAGIANRPLADRQLATALIQGAVSLAAGLAIGLGIPANGGARLLAGVI
GGGVIGTGAGVVLGASSAKHIRSTAQELASHFAALAQGNYSVRAEARGDD
ELGRLANSFNQMAAALEAHFADLSQRAAEQGQAKEDLQRQVIRLLDDVEG
AARGDLTVRAEVTADVLGAVADSFNLTIRSLRDIVVQVKRAAAAVNDAAL
QSENFARSLSADALRQAEEISNSLNSIQEMTESIQEVASNAREAANVTAQ
ATEAAARGGEAVDRTVASILEIREMAAETTRKVKRLAESSQEISKIVALI
SQIASRTNLLALNASIEAARAGEAGRGFAIVADEVRQLADRAAKASKEIE
QIVLQIQSETSNVMTAMEEGTQVVIQGTRRAEQAKSSLDEIIEVSRRIDG
LVRAISQATVQQTETSRAVAQVMQSVELTANETSEEAQKVASSLQQLVSI
ARELQASVGRFRVGDE
>CYA_0673 HD domain protein
MSTQLTPRFAEAMRYAYRWHAAQTRKGTRIPYLSHLLAVASIALEHGADE
DEAIAALLHDSLEDGPRYSGEPRAQIERELREHFGERVLQIVLGCTDTDS
DSSLGEPKEDWKERKVAYLKHLETADASVLLVAASDKLHNVRCILRDFRQ
LGDQLWERFSGGKEGSLWYYRSLAEILGRRLPSRLAVEFQELVVELQRAA
GSGPATA
>CYA_2797 sensor histidine kinase
MPAAKPDPPSQQAAAAVRQEAVDWQFAFERSEVMRAFQQELLVSIGHELR
NPLSSQMGSLQLVLSDLCDSREEEREYLQSAKEAVERLIQLLEEYSRLAR
HDLPIQPLQPKPTRLRPLLQDVYSLTRLQAQDQGIRYEWPILQPPSASEL
PALPDSLMVWADPHGLVQALLGVCRWGIRTLRYGSMALHLYPIAAAEGRL
CLEWNLEGRCHVPIQTKGCAAWRVSERLLREMGGDLELGESSLHRVVIKV
ILRLAQ
>CYA_2146 serine/threonine protein kinase
MDSPGAVSRRTRTTKSIHDSYQILGLAGQGQYGRVFCARPRHGGDLVALK
ELPAERFPTPNLLRELRYLLTLNHPNITRCYALEHAREGRYLVLEYCEGG
TLRELIDQVERGLWLPVKQVLGFVDQILAGLDHAHRQGVIHCDVKPENIL
LKPTPQGWQLKLTDFGIARHPQPAPGEISATGSPAYMAPERFYGQFSPAS
DLYAVGIILLELLTGRRPFSGSPSQLMHAHLNQPFVCPEGIPAPLQELLE
ITLRKLPLRRFRTAAQMRSALATFAREWQEPAGCWVGPRLSRRSPPGLQV
WDLPDPGFVGEGGRESLPEQKFCICEDPSGSRSPLLLRVTPQRLEWLDLQ
TLASGAPPLACFSLAEPLQQVLPLPSFPEALAFSKSNLLHLSPARVRTLL
SFAEDWRATWLAERQELVWATAKEIGAVQWLPAGPTVAQPFPEFHCYFRW
PWQVPTGSLLRLLALSEHLVLLAGLGRQWVEMTVLPYPAAWPPQTGSQPL
RYRLPLDPRGRVLSLGERLLFAGGDGGGQGCCPHLCSVQVNPLRLRRWFL
KGWPLQMAKAPWGVLLLCREGEEFSSLWLYSEGGYPLAQVAVPVGSEVLQ
VGQRGLVWLQVPKAGKPQQFQLWQLDLNQLPANGHAAEGVALG
>CYA_2217 sensor histidine kinase
MPNLASPLLAGQERGPQRRLSPSRRRLGWALAWGLGWATLLNLSAQHPLL
LRLESDAQEWLYAWRGPQQPSPEVVVLGIDGRIDGQGESGDGQHNVDFLL
ERANYAGLTLRLLEEAEARVVVLNLPSSFVVPQNLGNENLDAPLRQVVQR
YPDRLVLATRSSESFGRSEINIYNHFLPFSSLRLEYLVPPEHVQGVVQHR
VDRTGILRQAQLRGLYLRRDSQEEQMFASVEALAFAKYDPEKASRWFRKP
GLQPFQFNPLGSQHSIPIIPIERVCPPLISQTGSGSPTLSPGQACRGQEG
IPPLDPKVADQLRDKIVLVGFVGGYPETFPVRTADGSQIAAVELQAQILS
SLLTGEVYRSLPAGLAAGVVFLLGAGTGLIWVLYRPSPRRNCWDWKQQRS
LLWPVVGLVAYEGWAVTQFLLWRWIWPLTLPALAVGLTGVSLLLTLVILE
NQERLLAQQQELERLRRAEQEAAIDQARKLLYRIATDIHDRELQELKVVM
DELESLQWQQQQGKDPDPAIYDRLLEQLERIGRGIREQLNDVRTLATKLR
ISPSLREGLHRGIDTYLDELIRTGSLTLPVERHLQPLEEPNTGEWFDQRE
DILRFLREAIGNVIAHVQPPKGNASFVKVSLVQKERHCCLSVINDGVEYA
PSPGGGYGSKAMNTIARYLPKGSWHRTHTPEGHTYVELHWEMPL
>CYA_0763 pspA/IM30 family protein
MGVRKIIYGIFGQRAGSVIVGTWNWLWGIPVDKGGTGAVMVAEESLRAMQ
ETVQRLTEAVATQVAAYQRAEQKYMQKVREYQALENKARLAAQRGDQEAA
RLAMAEALRIEAILGPLKENVETAERYVTAAKQKLAREKERLALYKRELS
NLKDIYEVNKALEQMTRVNNAYSIDSAKSQFEAAKNAIQARQLKARALSE
LSEDRSEQLAAQLDEMALDDEVSRRLAMLTGQGGGSANLPLPDLDFEKRL
PQ
>CYA_2727 response regulator
MESLLSRISFSSGFGLPVDPNLESAAATGTSEGPQASLGASKGEASSLRA
HVLIVDDSYMVAEMLSNFLGKQGCSISYALDGLSALEQIRRRTPDLIIAD
WVMPALDGLELCRQLRQAPEYAWVYYILMTAREGNDNMERALEAGADEFL
SKPFQAAELLTRVRAGLRIVESRRQQYLLQTGQKQVSSPSGSVALGNRQD
LVTRLPLRVAQARAQSDPLSLFVLRLANLAALGQGLEAGGRAALLKLFTD
RLAHNLREGDDLFCYDEGQFIVVLPGSTLAAAQIAAERCCQRLIQDPFVV
NGQALPVQLQFGAATLTDKDDPKGVALLRRAAQALRDSKNVHTSVVTAPH
PILVSDRVRGTESSELLKSLQRLEQENANLRQELETHLRQLEELRQQNQE
LSQRVGRLGSETSAAGSRSQRPLWIRRRKPRRRLERQLGRGKWRLRR
>CYA_2739 response regulator
MSRVLVVEDSQSQREMIGKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIV
LDIVMPRMNGYEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGLRQGADA
YIAKPFQPQELVGTIKQLLRG
>CYA_0253 sensory box histidine kinase
MVQDLRSSSGSLEQCFGQMPLLVGFDSPLAEVLSLLAQKNGSRPYALVVD
AGRVVDILTAVDLTLPPRGFLRSPKWTRKGAVKTPLDSPLRHNLKVLLTS
DLSSSRLVIAARVLHRSRLFSWRSSVLTITKKQLKWLKGFSAPYFSTGLP
SYPFVLRWVASDRSWQGSTLAEAMTAPVVTLAAGDYRDPLAVKDPPFVYW
PPEEMEKIATAFAQGLAQGRPPQGWELTFMRRNGERFPVRILDAPWQDAQ
GKVIGIASVQDLTQEKELQNPQQKRQHSLHDQPDLFQNLFEQAPVGMAVT
DAAGQIVKVNESFCQLTGYTEAELLSMNYADLTHPEDLRQEAIYVEEIRA
GRRRGYRMEKRYIRKSGEILWVDLSSFVAETPDKQIYGIASIVDITERKR
AQEQAQLQLHQARLLNRIAQGIRQSLQVESILGFAVEEVRRLLDVERVVI
YRFFPNWVGEIAMQSVSRPELSLLGLVIEDQCFVSQWHQAYQQGRISAIE
DIDTAPIQPCHRELLAGLGVRANLVVPILQAAGPDGKDSEPARLWGLLIA
HQCSAPKQWDPWMPDFLRQIADQLGLALQQAELFEQLQAANAELRYQVEV
RNAELAQRVRYEQLLRLIGDKVRSSLDEQEILATVVRELTQAFQLGACGV
ALIHPETQTYTLAYEAAGSLPPLGKVTLPLDPVLLRQLRQGQTLYLSTDH
PLRGRCTLLACPLVVEEQEGQLVSGTGSLLGFLKLVRLPQEGFTEAEIHF
AEQVATQCSIAIRQARLYQETQAQLQQLQQLNELKEEFLSMVSHELRTPL
TSMKMALKMLEVRGLSEAQIPYFNILKQEWQKELDLVNDLLDLQRLEAGS
RSLEIARFEVREWLEKLLPPFALRFQERQLTFISYPPSEPILFNTDVGLL
TRILSELLANAAKYTPAGQQVHLEVAVDSSGLHLQVTNTGVEIPAEHLPR
IFEKFHRIPHLDYAHQGGTGLGLPLVKKAVELLQGILQVESGENRTLFAV
SLPDLGSSALTPSPSPSGRGELDDPGQRCRSNSRHG
>CYA_0042 WD domain, G-beta repeat protein
MVGQTLAGRYQILEELGSSGQTYLAQDGHCPEQSWVVIRRWQPRSPKGEE
PSAARQRFQQAMALRERLGSHDAIPRLLAYFEEEGGFYWVEEWIQGQTLE
QALRQTTEQGQLWSEVEVRAFLQDVLQTLAFLQGEGVSHGNLRPSCLLCR
QSDGRWMVLGLGQAMASAGSGLEASSAGGDLDALGLLALQALSGIPTHKL
FRDPLTGELRWHDLAPTSAPFAAFLDGLVGCDPRQRFASAAAALAALQAL
SLAEGVSPGAEILPDPVAVDPWQEPTTPPRSPVSLRARFWIPPLWAGSSL
AALLVLFGVAAWQLAANLSRWGEKAVVPRDSVPPAGTMANLGSAGPNSFS
FTEQPPNPSKTGSPALDLADWAKSLRLKAKLEGPAAITALAISPDGNLLV
AGGDDGVIRFWDPQAGQLLQSWTGHEGSIETLAISPDGTFLVSGGADKTV
RVWDLAALGDPALRSGEGVPRLQLQGHTDLINSVAISPDGRWIASGSADR
TIRLWQAEDGQLVRTIDSAAYPVTQGAGITAVAFAPSGLAEEGSSPWILV
AANGNPAVYLWDPRSGALLKTLEADYPIEQVLLSPDGRHLLAASASGIWI
WNVGTGSRERTLPQPLSGLATLALSPDGRLLASSTDHRAQQIKLWDLRSG
KELRTLGGQTWMVSALLFGPDGQTLLSGGADGAIRIWGPEHPASEAEKGT
QP
>CYA_2312 response regulator
MGRTLIEPAPSRWNRNLPLLILLTKDADLKRMLLQKPIDPDAIFKILNEQ
LDYAKNEASNLERKRILVVDDNKSFVLALREPLDPWRLDLYSLSIPKDFW
EQLNQIMSELNDRDWSKIPILFLIAHPDPHTLEQVFQAGEDDFVGKPIVG
PELITPIFNHLERTELLRRAQGRNFP
>CYA_0559 bolA, BolA protein
MLTSNRLRQLLAEKLQALYVHVEDESHRHAGHGERQQGSGGHYRVQVVSP
LFAGKTSLQRHRLVYAALAEEMGQSIHALALQTYSPEEHDSSQ
>CYA_2740 cheW, chemotaxis protein cheW
MEAPEGELFLKFKVATGEEFALPAVSVVEVMSIGPEKITPMPNVAPVLLG
TLNLRGEIIWVADLGQFLGISPPLNLDRAELPVVAVMDQPDLLMGLAVDL
IVGMEWLKTEAVRPVLVAPESIAPFLRGEWVVPATGARLPLLDQSAILRS
DRWG
>CYA_1900 kaiC, circadian clock protein KaiC
MNQPLEPSESEKLQGNAAEGIPSTYFLGGPEPRGIPKKQTGIEGFEDISH
GGLPLGRTTLVSGTSGTGKTLFALQFLYNGIVKYQEPGIFVTFEETPADI
IRNAASFGWDLQALIDKGQLFILDASPDPEGYEVSGNFDLSALIERIQYA
IRKYKAKRVAIDSVTAIFQQYEPAGVVRRELFRLTARLKQANVTTVMTTE
RTEEYGPIARYGVEEFVSDNVVILRNILEGEKRRRTIEILKLRGTTHMKG
EYPFTITNEGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFFKDSI
ILATGATGTGKTSLVSKFLERGCLNGERCILFAYEESRAQLARNASSWGI
DFEEFERQGLLKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDSLSAL
ARGVSQNAFRQFVIGVTGLAKQEEITGFFTNTTDQFMGSHSITESHISTI
TDTIILLQYVEIRGEMARALNVFKMRGSWHDKGIREYLISDSGIQIRDSF
RGYERIISGSPTRINVDEKNELSRIVQNVQSLDE
>CYA_1799 ntcA, nitrogen-responsive regulatory protein
MAVAIAEKSLVAAFKQLGGPHHPPVIETFERGKTIFFPGDPAERVYFLVK
GAVKLSRVYEMGEEITVALLRENSIFGVLSFITGQRSDRFYHAVAFTRVE
LLSLPIEQVEKSLRENAELSMLLLKSLSSRILQTEMMIETLAHRDMGSRL
VSFLLILCRDFGVPGPNGVTIDLKLSHQAIAEAIGSTRVTITRLLGELRK
KNYISIHKKKITVHDPMQLGHRFA
>CYA_0307 pmgA, pmgA protein
MIALSLKPAHCSWSVISFPSTLYTQPILDLLVAKVPPPWRAEVRLGLQEA
LINAVRHGNGLDPNKRVIVEYASSEPFYQWLVRDQGSGFRPQEELNRCRC
GILETEESGRGMLLLTQIFDFVQWNETGNQLYLGKYIHPGCRDPWIV
>CYA_0637 sasA, adaptive-response sensory histidine kinase SasA
MQTSLDRTSTRSGIRLLLFAQGRANIEELAEQLRRHIQGLPGQHPAHLKV
VPLEEHPYLAEHYKLVVTPALVKAEPLPAQVLAGEDLATQLEVWWPRWQG
QAALVSYQEEAGQDPAPPPTTEALLQMSEEVFSLRQERAQLREQLDFKDR
VLAMLVHDLRSPLTATALAVETLQQGREGSLDKAVERQLFEHARQQLRKM
DSMITDILESARGSASELRIRAVETQLASLCQPVIEELLPRIQAKQLQFQ
ADIPVDLPTVHVDPDKIRQVIFNLLDNAIKYTPAGGSIRLNILHRTSQKV
QVTVSDTGPGIPEAEQENIFSDAVRLSRDQQQEGYGIGLSLCRRIVRAHY
GQIWVESILGKGSSFHFTLPVYRLCGR
>CYA_0768 sixA, phosphohistidine phosphatase SixA
MAVDFIRHGIAEEAQAGVEDAFRALTDEGRKRCRKIARQLKDMGWKWDLL
LTSPLVRARQTAEIFFDENLAEALEVFEPLAPDGSFADLVRWQAERDPFT
SLALVGHQPDLSLWIQAAIGLQPANPQAITLKKAGLAQVRFAEGRIDYCQ
GSLTLLLSPKVILR
>CYA_0545 typA, GTP-binding protein TypA
MSLPIRNVAIIAHVDHGKTTLVDALLRQAGTFREGEDIPACVLDCNTLER
ERGITILAKNTAVRYGETLINIVDTPGHADFGGEVERVLGMVEGCLLVVD
ANEGPMPQTRFVLRKALEKGLRPLVVVNKIDRPRAEPYKVVDKVLDLFLE
LGADEDQCDFPYLFASGLQGFALEEADLKAFLEGRYSGPLDMKPLFEAIL
KHVPPPIGDPAKPLQLQVTTLEYSEYLGRIVIGKIHNGTIRLGDQLAVVK
EDGSIAKGKVTKLFGFQGLQRVELTEATAGHIVAVAGFAEANIGYTLTSP
ENPQALPLIKVDEPTLQVMICVNDSPFAGQEGTFVTSRQLRERLLRELET
NVALRVEETDSPDCFLVSGRGELHLGILLETMRREGYEFQVGQPKVIFRE
VNGQPYEPYECLVLDVPESTVGACIERLGQRRGEMQNMMVGADGRAQLEF
VIPARGLIGFRSEFIRITRGEGIMSHSFLEYRPLTPGIETRRNGVLIAFE
EGVATTYALKNAEDRGVFFITPGTRVYKGMIVGEHNRPQDLELNVCKTKQ
LTNHRAAGGEELVHLQAPVEMNLERALEYIGEDELVEVTPKSVRLRKAQL
TASRR