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# Rhodospirillum rubrum ATCC 11170, ATCC 11170

>Rru_A3187 Two component Transcriptional regulator, Winged helix family
MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVL
DLGLPRLDGIGVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVT
KPFEMEEVVLRLKALIRRAAGHPSTELVAGPLRLDTTSGRGSVEGRPLDL
TAQEYKILTYLLLRQGQTVSRSDIVDHVYDRDSDRDSNVIDVLVGRLRRK
LGAPLIHTVRGLGYRLEAESAPPDQGALR
>Rru_A0874 hypothetical protein
MKQGLIGAMGVVLLLGAAEARAQDLNQRVGADPGLQAKTNQLYTKAGNQS
ARKGEGLIDNDIISDCPTATLGATETDSRRSSLRETNETVIRGDVIYRCK
>Rru_A0553 Response Regulator Receiver Signal Transduction Histidine Kinase
MNDPIGDPDLLLVEDDLPGEDRVSSPASDLGWKVLIVDDDLEVHLITRTV
LANVTFKNRPLLLLSAHSAEEARTVLANETDIAAILLDVVMESDDAGLRL
VRHIREDLGNRAIRIILRTGQPGQAPEREVIVAYDINDYKAKTELTSQKL
FTTIVAALRAYCDIIELENGRKQLERANSILEQRVADRTAALARSNAELE
SFAYGISHDLQEPLRMVRGYLQLIRRRLGPGLDSETRDYMAFAEDGATRM
GTMINDLLDYSRITTQPAHFEPIDLRHPLTLALGNLTLAIAESGAALTLP
DEPALISGDEGQLARLFQNLIGNALKYRHPDRRPAIGVAIEALAFDQRPG
WKITVTDNGRGIAPKDFDTVFNLFRRLDSGGPGGVAGSGVGLALCRRIVE
RHGGRIWVDSVIDEGSSFRVHLPAGLENSAPPPEAGDPPV
>Rru_A2236 UspA
MKIVVHVDGGEAWPRRAEAAARIVSTRGGGRVLGLFGQTASALPSYSIHG
DKEGIDRDAQPQRDRFESLMANYPDVSAEWHTIHSLNPGFIVSEITANAQ
FADLTVLGQVDPRAIPERLPNDLAEQVVLNCGRPILLIPYAGTFEYTFER
VVIAYNDSRESSRAVGDALPFLDGAEARVIVIRHSPEPTEGDSWRWRELA
RRLEEHGLRRVVVETPVLNQIGVADFLLSQAADSAAQLLVMGAYGKLGLP
RMLRGSVTRDILRQMTLPVFLGH
>Rru_A2087 extracellular solute-binding protein, family 3
MSFKHVVALAAAFGLLAGSASAEELTGTLKKIKETGEIAIGHRDSSIPFS
YLDDNQKPIGYAMDICAHVVEAVKAELKLDTLAVKLTPVTSATRIPLIAN
GTVDLECGSTTNNLDRQQQASFTNSHFLTASRFVSKKTSNLKSIDDLKGK
TVVSTAGTTNIKQVNELNTARGLGIKIIPAKDHAEGFLMVETDRAVAFAM
DDILLATLVAGSKTPSAYVISEDAFSLPEPYGIMLRKDDPAFKAVVDRAT
AALYTSPEGPKLFAKWFENPIPPKGLNVNLPLAGAMKNALAHPSDSADPK
AYLAP
>Rru_A2516 Multi-sensor Signal Transduction Histidine Kinase
MAGLRFGVRSRLVLAFSAMAAMTLVTSAVAILSFSEVEARFIELTTTRLP
AMAAATKLSQQAESIVAQAPALVAASSPTELHTIDFRIRDQLSWLAELIE
RVRKTDGEAIAMARVDDLARELERRFVDLATQVERRLSMEALDRQTLGRL
LVLGRTITGIRDQRETEGPPEDAAIARRWAAGAQDANTVLIAALATTDAA
ILRNLGEAFGDLLETAETESARLSDPLSQDMRRSTAELRHLGLGEAGIFN
RRQAHMDITRGIQGTLTRNRLSGDLLSGASSQLADRIAEEAVKSALVLRA
ELHNRGAMMIVLSLFGVFGAGIVLLHLQRTVLRRLATLRAAMTAPLSTRP
LVLEGSDDADEIGDMARALKGYAQAIADREHALRQSEGRFRAMATNVPGV
LFQWFWRPLGEPRFLYVSPRCQDLFGVSPALVLADWRKLGFSLEDQRAWV
VRAAQAARDSRDWIQEGRIALANGGERWWRVVAAPTPGEEPDTIILNGVL
IDITALKDNERDLRAARQQAEQALSDLRSTQDTLVQAEKLASLGQLVAGI
AHEINTPLGTGITGATFLDQETRQIAGRFRSGTLRRSELADYMERAEETA
RLIFTNLSRAGDLVQSFKQVAVDQVSDDRRTFALDTYIDEIFQSLNPRLR
QTRLTVERAIEPGLMVDGYPGVLFRILSNLVMNTLMHGFEPHETGTIRVE
ARLLPDSAPGRVELVYFDTGKGIPHEIQGRVFDPFFTTRRGQGGTGLGLN
IVYNLVTQSLGGTMTLSSHPGTGTTFTVVFPIKAPRGVQAVPSPQPIKDS
GAATA
>Rru_A2914 Periplasmic Sensor Signal Transduction Histidine Kinase
MALKLPRRLLPRSTTLRIALSFLVLFGGASGLLMAGVYWTTSRFLMFQVD
GVIGDDIALLTNAARERGHRLLAAMLVTRARQAGEAQAVYLLADQDGEPL
AGNLATWPEGLEATGWTILPATALTVVPVTDTLPPPPRRPDRPEDSERRQ
RHREAWDDWRPPLPDSLPPPPPRLFADRGGRDPADPDVRPRPWRRGDVRV
AALTLPSGMRLLIGRDLGPIQALRHRMAGAMRLGLGGMVVLGLAGGLVMS
RRFSRRLEAVNRTSREIIGGDLSRRVPQGRGLDGDDFDQLAVNLNAMLGR
IETLMEGVRHVSDTIAHDLRTPLSRLRNRLERLQADAQCTDRDELAAALA
EVDSLLATFHALLRIAQVETGGRRMAFSPVDLLALLIDVAELYDAVADER
TVTLDLDLALAPGARLLVDGDRDLLFQAFANLLDNAVKYSPEGGRVSLAL
IRGETRVTISLRDQGPGIPAADRQRVFERFARLDTARTTPGNGLGLTMVG
AVIEAHDGTIALEDAPGGGLLVRVVLPLRRGPG
>Rru_A0884 Putative FecR
MIPADHSLPASVLEQASDWVFRQQGALGEPPPRADFEAWLAADPRHGEAW
RLACATWGATGALAPVFAAPPRPLCRPPRRKRPSKPLVALALAACLAAFV
VLSPLRLLWQADHLTGSGESATVSLRDGSRVALAADSALSTRISEAGRAV
TLLKGQAFFQVAPDRTRPFVVSGGGVSVTVTGTAFDVALDDGRVTVAVAE
GGVRVDYQGRSERLVPGEKVSVDPAMGEIRRAAVDPADVAAWRQGRLVSD
NQRLSAVIEALRRQYSGVIVLTDAALGETPVTGVYDLEDPERALRALVSP
FGGTVRRLTPYLLVVSPP
>Rru_A3443 PAS/PAC Sensor Signal Transduction Histidine Kinase
MFSDPSFADSVLPTQIGTLIVLVAGTVAVLMGGLALRWRSAWLRSLESRH
QAEYEAEALREILATASDGYYLWALDGPLRGREFCSRRLAVLLRLPSGVN
AELKEIIGVFAEGDAQALEGMIAVLRREGRGFVLDLLLAASGRRVRTVGI
RANAGDGHALADLLWMRDVTEETRVGDVQGRRAQALQAERDRLRAVVDAL
PAPIWTRDDSLAIGDGNTALARALDLGSAGDALTARRELAPGATGQEMRA
LAARSRAAGRPARARFHAVLDGERKLLEITETPLSEGPLRGHTVGIAQDI
TPIEEVESRLERETEAHAEVLERLGSAIAIFGGDTRLSFHNAAFASLWGL
ESDWLNGEPSYGDFLERQRENRRLPEVADFPAYKAGELGYFTKLLRPRED
ILHLPDGATLRRVIAPHPLGGLITTFEDVTDSLALERSYNQLTAVQRETI
DHLHEAVAVFGANGRLRLSNPAFSQLWSGAGTDSEPQAAALLDDMEAAMI
ADGAWETFRRRLCVRDESAGPRNGRLVRRDGRHLDYATVPLPDGGLLLSI
LDITDRVRVEQALSERTEALRAADMMKSEFIANVSYELRTPLTTISGFSE
ILSGAYYGELNTRQREYAEVITETSRQVVRLIDEITDLVSMQAGKLALEL
DAFDIHAALAAVLALGRESARRRGVTLNFDCPPDAGWMVADETRIKQILF
HLMSNAITGTDAGGQVTLAVQREDTPDGGTMVFTVADTGRGMDEILQTRA
FESFAKGPRADGAGLGLALVRRFVELHGGAVDLVSVPGEGTTVTVRIPTS
G
>Rru_A3288 Signal Transduction Histidine Kinase
MTRTAESFPAAHGASGEATESASVSPPRAPSAPSGATPSGPSPPDLPARG
RKRQVLARLIGRGVPLRRQVLALLILALLPGALYAGLMAHNSYTTDRERA
REHLRQQAIAAAAQESAAITGAEQVGKALALLPILTADPEICRESIDRIR
RGFPAYQSIFVVDTGGGVICSAIRPGVDMPASVAERPWFKALMSQGRPAR
ASEISPVIRDQPAILVAIPIPGPDGLPRGAVGLVPRLEGGAMPGKRFRAD
GGEAILVDTEGKPLPGSESLAMLPDAALLSGLQATSDRPAVFDAPGRDGQ
PRSYALVPLPRGSVNLLFARPEASAFDWAQRDVVTRLVGPLVMLLFTLLV
TWVAIDRLVLHWLAELRKTTRSFARGDFGQRPNLAAAPQEIQELGGTLSR
MADTIKAREAELEHTLSHREVLLKEIHHRVKNNLQIVSSLLSLQHRALPP
GPARSALMQAQTRINALATVHRSLYETEDPSLVDLGRFLRELGQLIYDGM
GGLNGIVDLDIRIDGAVLVTSDQAVPLSLVMTEALTNALRHAYPDGRSGV
IRVRLGALDAEETLAAADATEATGTLGRPTHCLSVEDDGIGLAAEVSPID
SAQGEGTWTTIGLGRRGIGATLIRSLARQAGGRVTIGLREGGGTRVSLAF
AAARPAPPPAAS
>Rru_A1177 chemotaxis sensory transducer
MTGFLQNADSRGPGEKSGGQYYAAAVASLGRRLETFKVSEADLAILGDLA
PFIRVELPGLLERWHGRFAQWPELASALRLPEVHKARTAHWVRVASGDLG
EGFLDSAHTLAAVFYANGVPGYAVSICHATVLQELIEALGQRPTSGVDFG
GRKRAQAAMIRAALNKIAWLDIEILLETYATAEKEARSATFRHLADAFEK
TVHVVVGNVGEATHQLGGIVDTLAQTADRSTRASGSVSTAAEEASGNVAM
VAASAEELESSIREISAQVSTANGVAERAVERARNTTATVDSLAGTVAKI
GTVIDLISGIAAQTNLLALNATIEAARAGDAGKGFAVVANEVKALANQTA
RATEEISKQIKDMEEVTHTAVSSIGEIAGVIDTISAATVAITAAVEQQSA
STREIARSTQVVADGNGQVSRLIGEVRDGAEQTLTLADAVSKATNVLGEQ
STTLRDAVESFLQDVRSAA
>Rru_A0612 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
MPMKRWVLAFLILELFVSCVLFLQFREERQRLFAAHVDRTLLAWEAARES
RLDLQRIIQGALLADGRIASLLSQALATPADRRAPLRTALADRFAPSRPA
LLAHGITMTQVLLADGATFFRLNNPQRSNAVEPIPRPALREVLASARPVA
AVETTSRATALRLISPVFHDARLVGVLETAVPLAEMPALLDHLDKTRRHS
LLGPLPAGESGGRLALAPLPPGAGAAPDPETARLVAALGDLGQPLADGHP
FARSLAGADADRVITIVPISDYSGESHGYLMANAVEPALETIRRSLIISA
TVTAFLLLAALLLLAQLVNSRRALLREREDMRAITDTMGEGLYILDNEGL
IAFVNRSAETMLGYSREDLLGAKAHSLFHSHDGDGRPQDADACAILRAMR
ERRHFTSSDEAFIRSNGTRFPVEVRCAPLTADDPLLKALAHQAPPGGPGG
RLAARLRAAMGNRPRLSVALSRLFGHADALLLPTNPRASVITFVDITERK
ASEAALRKLSRAVEQSPASVIITDARGTIEYVNPQFEKSTGYRSWEVIGA
NPRILKSGHIAEATYAEMWKTLNEGREWRGELHNRRKDGTLYWEYASLSP
VKDRRGRTTHLLAVKEDITARKETENRLIRQANFDELTDLPNRSLCYSRL
KEAIVEAEATASIVGVLFIDLDHFKNVNDSLGHAVGDKLLTAVAQRLREV
ARPGDTLSRQGGDEFLMLLPDLNGSEAGHGVAQAILTALAPPFSIDGREI
YMAASIGITFFPRDGRSAAELLRNADSAMYTAKESGRNAICFFSPEMEIR
AAQRLAIEGALRQALAHEELRVAYQPLVRTSDARPIGAEALLRWTSPTLG
EVSPTEFIKVAEETGLIVPIGAWVLDQAVAEAARLRAEGYGAFQIAVNVS
VRQFRGGDLAGLVSDTLKRHDFPAAGLELELTESLLLDVTPAITTTLQSL
SALGVRLSLDDFGTGYSALSYLKTFPFDILKVDRSFIRDISSAPDSGALA
RAIIAMARGLGLATIVEGVETEEQCAFARAEDCDIMQGFLFGKAMTPADL
RRMLDEKAAAE
>Rru_A0211 hypothetical protein
MPDPSDLLILRREVMGLFEHIQKMRREIASIHRPGATNDRFSAMSDELDA
IVESTETATNTIMEAAETLDMITSGLASTVADEEAARKLGQVPDLVGQIF
EACSFQDITGQRITKVVNSLQFIESQVHKLITMWGPEQIAEENVDDTPAM
PATAPTTKDDYDSFLHGPALNGQGATQAEIDAMLAGTPAPATASPPPSQP
PSAPPPPPASEPAPPPPPAKGVAKSRPAPPPPAPKPLTPIVPLGQADIDK
LFD
>Rru_A2058 Histidine Kinase
MNGAQKDEKADLPKSRPVAGWMTRRYLLALSLIALLALSGYLTFDKLAAQ
HDRTLGLVNISGRQRMLSQRTALYAERLVRDDCPEPVDVCHRILGEATDL
LEDSHRALTRGSAEMGLPVAKSPEIRALYFDGAPSLDQRMTDYLAALRQI
LTATRAGDDTLALDAYRRVVRESSGPLLDDLDRLVARHQSEGEAALEHLD
RAESAILALTLLTLLLEIVLIFRPMVTQIHRQFAALDHMTAALRRSRDGL
EDIVEQRTADIDRARAEAVKASHSKSRFLAAAGHDLMQPLEGAMMYAGAL
GRQAETDRARQAVAELKNAHQAMSRLIRSILEISKLDCGAVEPLPRVFAL
GPLLDQLVGEVQPQAQAKGLRVRRVWTSARLETDPLLLERILRNLLANAL
RHTHKGGIVLGVRRRADGLDIAVADSGIGIAAQNLGRIFEAFIQIDGGQL
DRSEGLGLGLAIVDRLSRLLGLDVSVRSRLGKGTVFSLHIPSGALADDR
>Rru_A0779 extracellular solute-binding protein, family 3
MVKQLKKIAFKAQAAGLAAALALCGLGFSSSAEAGETLDAIKARGVIKIG
VGGNSPGFSAPDSAGRWQGFFIDIGRALAVTVFNDPEKAEFVNSSPQQRL
PALQSGEFDILLSGVTQTITRATKLGFHFGPVVFYDGQGLLVPKKLGITK
GSELDGATVCVQTGTTGELNIADFFRQHKISFKPVVIEESNEFLKAFASG
RCDVLTQDSSDLAIRRTLLPNAADYVLLPERISKEPLAPAIRYGDDRWLE
IVNWTVYALIEAEELGITQATIDSFLGSDNPSIRRFLGVDPSLAEATGLD
AKFAYNIIKALGNYGEVFERSVGKASKLGFERGYNQPWTQGGLLYSPPFR
>Rru_A0691 Predicted signal transduction protein
MMQTILFVDDDINLLQALQRMLRGYRAEWEMVFVDDPRKALALLATRRFD
VVVSDMRMPDLDGAQLLSEVERLHPGTVRVILSGYAEESSLFRSVGPAHQ
YLSKPCDPEAILALMARSWRLREILADPALRDLAASLRTLPSPPDLYLRL
TAAMADPAVNTSTIARMIAEDMAMTAELLKITNSSYFALPSRITTAAQAV
RLLGLETVCVLVLHAGIFRQFQGHPGLGEILRALSGHGVAKGLLAQKLAA
EDGADEAVRAQAHCAGMMADIGALVLLDAYPDAFQTMIAKAGRGKLEAVE
RAAFGASHAQLGAFILGLWGFPDPVIEAVLYQWHPSQCLNQGRGALSYVH
LACVRGNASPLGPPGMGECDLDADYAARLGLDHSPCVR
>Rru_A1583 chemotaxis sensory transducer
MFRLHPRGKRQRFVEWIKRRKKTADTPMLRNKRVVVKISVIVAIMGLALC
VTVGWLLKSQYDALLDERVTQTRVLTEAAVGVATKLQAEVSAGRLTRDQA
IETWKTALNGMTYGDNGYLFAYAVDGINLVLPPRPDLVGKPVVDRGAFLA
LQAAATRGPGGGRLDYVWPRVKGGPPIPKVSWAMEIKAWGALVGTGIFVD
DVQAIFWAKLREAMLIGGLLSAVAIVLVSLISRDLSAVLGDIAQRMALIS
GGQVDIAVPNQDRRDEAGAMARSLEVFRGKVAETEHLRGDQERLKASAEA
ARKASLVELAKRFEDSVNSVAQAVAKGARTMDENARTMFGLANVTREKAS
DSSVMSERTNANFQTVASASEQLSASIREIANQTDKARVTSQQAVETADQ
SADRMAGLVSDAEKIGAVITLIEAIASQTNLLALNATIEAARAGDAGKGF
AVVAHEVKNLSTQTRKATEDIRGQIERVRASVSAAASDIATISHVIHDIA
EAAGAISAAVEEQGAATKEISRSVQEVLSTSESVSHDIRTLAEAARETET
TAGALRDTAGGLGQAATTLQEKVDGFLGDLRHG
>Rru_A0525 Two component Transcriptional regulator, Winged helix family
MRVLVIEDDAATARSIDLVLKKEGWVVDTTDSGEDGLEIGKLYDYDILIV
DLMLPDMDGIEVIRHLRASRINTPVLILSGLNESDRKVKGLGVGADDYLT
KPFDKSELIARLQAIVRRSMGHSQSVVTVGQMEVNLDARTVSVAGDPVHL
TGKEYGILELLTLRKGSTLTKEQFLNHLYGGMDEPELKIIDVFICKLRKK
LAQATGGTNYIETVWGRGYVLRDPDDTLPKDGGVKQTAS
>Rru_A1545 Putative diguanylate cyclase (GGDEF domain)
MTSQEAKTIEGLKADLARLREILSITEDNLRASQNEVLRLSTIDPLTSVL
SRRHFMDIADQEISRARRYKRPLAVLAIELDNIKAINEVHGTERGDAVLV
AVGAAVLRSLRATDFVGRTAGSEFTVMLPETEHEGCMSLAERLVADLARA
AAAEVGNTTPLPTVSIGATHFVREDVIFDTVVQRVDQAMERAHAAGGNRT
LYLGANQIEAEF
>Rru_A2934 Putative diguanylate phosphodiesterase (EAL domain)
MPETPACGGECKRSLGFEFTMAFQPVVDLPTRRIYAYEALVRGVDGEGAQ
AVLARVTPETLYAFDQACRTKAIELAVAQAMTARLNINFLPNAVYHAETC
LRLTLDTARRLGFPMDRITFEFTENERVMDRDHLRAIVATYHRFGFQTAL
DDFGTGYAGLGLLADFQPDCLKIDRLLVEGIGEDRVRQAIVGGLVGICER
LAIDVVAEGVETLGELRALVAMGITRFQGYLFARPKLGRLITEAEIVFPD
LG
>Rru_A0081 chemotaxis sensory transducer
MTVPAKEGRHPSSPTRDRVAPETIIALIADVQSATAGKISEIRAVTSRTK
ILALNALIESARAGEMGRGFAVVANEVKGVSDEVTQIASALENELSNKVA
LLDRIGREIVDDLRLQRGQRLIDLALNAVELIDRNLFERTCDVRWWATEN
AVVDCLALPRAETRAFAARRLAVILGAYTVYLDLWICDGEGRVIASGRPE
RYRTEGQNVAGERWFQEAMASENGEDYSLADIAVNRVLGGQPVATYGAAI
REGDHNDGRLLGVLGVHFDWTPQARTIVEGVRFTEGEAARSRALLLDATM
RVIAASDGKGLLSERFVLKTDGRASGYYQLSDGTQVGFHRTPGYETYKGL
GWYGCVIQHPET
>Rru_A3241 chemotaxis sensory transducer
MIDIEFHKEERIDALGLNAEARSLLREIQPLAAACIDRALDGAYDRMQRY
PDSRRAFDGVDIAQAKRVQRQHWLEDVLSPEPTDSQFANAILLAQGRQKS
GLALRWYFVFFMAILDGLIEGITPAYRRKPERLSKAISVLTRAVFFDLDL
FTAVYVAAAEGAAASELNRQADAFEAQVSDMVKAVAASIAEVQDTARTMT
AVADQTQAQALTALTAGDEAGANAQTVAAATEQLSASIIEIGRQVGQSTR
ISGEAVTAARDTDHLVQGLAEVARKIGDVVKLINSIASQTNLLALNATIE
AARAGEAGRGFAVVAGEVKNLANQTAKATEEISGQIAAVQKATQGAVGAI
RGIGATITEVSAITAAIAAAVDQQRAATEEIARSVQQVAQSSALATKGMT
TVTQAAEETGGAARQLRDGLDGLGHKSARLTTQVDDFLGRIRQRG
>Rru_A0659 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation
MTPNEDLIEIFEDEEISPSLTAKTWPILIVDDDQDVHDVSRLALRGVRLL
DYDLETLHAYSAAQARAILSSRSDIAVALLDVVMEREDAGLDLVRWIRSD
PARDLLRIVLRTGQPGYAPEATVIQDYDINDYRTKSELNRGRLISILTTA
LRSYRQMAVIAASRDGLDKIVRASADLLASPSMAIFAEGVLTQLAGLLGT
ERSGIVLARRNRRPGATASMAMTGDEGFVLAAAGPLSADIGRPLSDIGDH
QTAEILRRTLESRRSSFDHGSMALYIATPNGDSLAVLMEVAKTLGDTDRK
LVEVFCVNMAAGFDTISLFEQISLQAFHDEATGLPNLAACQSLIDQYLQR
RQPVAVTFFSLEGFSAISDTLGRVIGDRMIGLLANAFRHRLQERGEVFRV
GQETLATVIGGPVDQVGPLADQLAGDFRAGLPLDSMTLPVSFSHGTSVST
SEHDTAQILVQRAGIAMQKARNIKRGGGLTYAVAMEEEIRAHIGVISKLG
AGVVSEAFVAVFQPKIRLADRSCHGGEALVRWRDGDGTMIAPSLFIPAAE
TSGHIVDIGYSVFRQSCAMIRSLKVSQDDARIAVNLSVRQMREPDLIDKL
VSIAAEEGVATTRLKLEITESIVIDDLTHTVSLLKALKDKGFLLALDDFG
TGYSSLSYLRSLPIDTLKIDRSFVSGLAEQADMRKIVGLIIGLGHELGFD
ITAEGVETEEEARIVTEMGCFTAQGYLFSKPLSAEDFLVFARTHAGARQT
SGGSLSAEGCIRARDA
>Rru_A2146 chemotaxis sensory transducer
MSREIALLRKGVLRFFIPFLLLQVALVAVAGLITGAAMLAGLAVSALFAA
IPVALIFLAGDSPASRSAIGVGLVIQVAVLVFMFRGHPWQIDIHLYFFAV
LAILVVLCDARVILAAALTIAAHHLILTYAMPAWVFPPGADLGRVALHAA
IVIIETVTLVWVIVRMTTSFATAEQAVVEANTAREDARKVAEERLRLEAA
AAEAQVTAVRGVADDLEGSVGTALGALKDDSATMRRAAEALNGSSESSRQ
VSSMARDLSERTAEGVESMAQAARTMTQSVSGILESVRHSDALSRSALTD
TERATEKVAALSTAAERIGEVVGLISAVAAQTNLLALNATIEAARAGDAG
KGFAVVANEVKTLATQTARATDEIAAQVTGIQGATRDSAAVIATISRSMT
DISATVSAIAAAMEDQGKASQLVAGTIDAVSSLAHELGEVISRMDGLTGD
FSANAATMRGLSDHAVDEIDRLDQSVIAFVGRLRA
>Rru_A2636 Cyclic nucleotide-binding domain (cNMP-BD) protein
MTQTRPCEAADLARLSNAPLFAALDPQRRQTLARCAQVMRTRGPTLLFSH
GDPADAFYGVLEGQVRLTTLTAEGAESVIALIEPGDTFAEAAIVGACRFP
VAAQAEAGSLLVRVDGAGFLRLLRDDPGLLRGLLAGLIRRQTDLVHEIHF
LKSTSPAQRLASYLLSLLESGAWPGHGRLPVAKHLIASRIGIEPESLSRA
LARLADQGILGPGPDLTVENPQALRAACAAGPRL
>Rru_A3137 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
MVQVPPPPPTGFADHASAAEDREAGDGPAPSIAEGLSAALFQSVVEALPV
GTALLRDGVIVHANATLAGQIGETIDTLIGSPLTSYLTPADALAVQKVVE
GAIALHGGVPVRRIAHIRHISGSERVYSLRFSPLDNGPHPLLVVITRDMT
AQVAAENALRAAEGKYRAIFENAVEGIYQSTPDGTYLDVNPALARIYGYA
SPAELIAHFTDIASQLYVDGTKRGEFQRLMRETGEVRDFTAEVWRCDGHT
IWITENARCVRGPDNEVLYYEGTVEDITAQRQSQETMRLLGKVFTSIAEG
IVLLERDLTVRTVNPAFEAMTGLLRQDMEGRPARLFASGLHENDFLATVA
AEVDRAGLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDIT
KRKRDEEHIRFQANFDMLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFL
DLDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISDSVGRLGGDEFIVIL
SNVEDQHAGAYIAEKILYSLSEPFPIGGTEVFCIPSVGITYFPDHGETAP
DLLRNADVAMYHAKQGGERRYAIFTPDMARRSLALLTMESDLRHALARDE
FELHFQPKVRADLTLIGAEALIRWRHPEKGLINPGDFIPLAEESGLILPI
GRWTLREACDRVMSWRAEGLTIPSVSVNVSPRQFQDQTLVETVRQILVET
GLEPEALDLEITETVMTGDVEHAVGTLRALKDLGVTLSIDDFGTGYSSLN
YLKTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIALARNLGFSVVAEGVE
EIEQAEFLGSRDCQNFQGFLYSRPLPPAEFTTFLRTAKLETATPPDLVPS
IAPGP
>Rru_A3422 Two component Transcriptional regulator, Winged helix family
MTHSIALVDDDRNILTSVSMTLEAEGFRVVTYTDGAEALRGLSIEPVDLA
VLDIKMPRMDGMELLQKLRERTAMPVIFLTSKDDEVDELLGLRMGADDYI
KKPFSQRLLIERIRAILRRLDLQKASPGGPELSAAALVRGDLTLDPDRHL
CTWLERPVDLTVTEFLIIQALAQRPGHVKSRDQLIDAAYGENIYVDDRTI
DSHIKRLRKKFREVDREFSEIETLYGVGYRYRDPITVKAGA
>Rru_A1218 phage shock protein A, PspA
MGIFSRLTDIVNANLNSLIDRAEDPEKMARLMIQEMEDTLVEVRTATVRT
IADRKDLERSLERLEAGGREWGEKAEFALAKGREDLAKAALIAKRKLADQ
AEGARAELKAIDESLAKTNVDLGQLQAKLEEAKAKRKSLEIRMRSAQKRV
DLRRTLHDGRIDEALGRYDSLERRISELEADAESYDLGKTAGVSLDEQFS
ELRAEADVEDELARLKETVARRGAGA
>Rru_A0976 Transcriptional modulator of MazE/toxin, MazF
MKRGDLVTIAVSGDYGKPRPALVVQDDAFAALPSVTVLQLTSDVHEEHLI
RITVRPDEENGLRKPSQIMIDRAVTLPRAKIGTVFGHVDTQTIKSVDAAL
GRFFGIGRQ
>Rru_A0631 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain
MTLETISSLLPMSAAGLAAVVSALAALGLGLGLWCARHRLRLLTAALEAS
GCGLITIEGGTRVFQANRQAARLLGRPEGLARDTQARKLFGGTLTAAVQG
PGDGQPVRGTAHRPDHGWFPATLQSLGPCGGFARQRRLWLLRDLSDAQEL
ERLRETEERFNASQRFGRIGVWDWNTETNEVFWSEEVFPMFGFTPAEITP
TYDLFIAMVHPDDFVALTDSERACLSGTTLHDQEYRVIWRDGSVHWIRET
ADVLRESDGTPRRMVGVIREVTEEKEAQRQALRIAMLDPLTGLPNRATFL
ERLEADLGQVDETGVAVPLALAFIDLDDFKPINDTYGHLMGDRVLMTIAK
RLSEAVRPQDMVARVGGDEFVALLRGCRDGARARTVAARLLDAVTAPVSI
DTVIHRVRASIGISLYPSLVSTGDDLIATADQAMYVAKRAGGDPIRLHGE
>Rru_A1488 Metallophosphoesterase
MIRETWKRLTSASSPPPAAPAVPSGVRVYAIGDIHGQIDALDRLHDLIVR
DAAAEAGSARRFLIIYLGDYVDRGEATPAVLDRLCGPSLPGFERHCLRGN
HESAMLDFLEAPTANLGWLEFGGLATLAGYGVRMPGVSGLAARAEGLAKG
LDACLPAAHRAFLGGLASQISIGDYLFVHAGVMPGRPLDRQSEDDLLWIR
EPFLSSPLWHGKRVVHGHTISEAPVVLPNRIGIDTGAFAGGPLTCVVLED
ETLRFIATDEYHYRAR
>Rru_A1805 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
MTFEDPSFWAALLTAATTAGAITILVALVRRNQAKGPDRRAREDAEIFLG
LSDGLIVLDDGGRVSALNRAAQRMTGQEGEAAVGKSARRLLPGLESVLEG
KDRLASSLGLWCRLPATGREEALASTLGALLSETTGPAGTRTVLVLRDIS
EQIRLTEVDDWLRVIDGHLLAGTSLGDLANDLCERVARAFGLPLLWIGVP
RPEGLLVVGKGGSEAARLSAYPEGRGDEGTQGVAGRTLRSGRAQSDDAGE
GWAAPTWAPGVPLGRAYCVGLRARGEVVAVLCLRGHGEAPSPALSRALEA
LGPRLGEAIVYERGQSLMRLQSAAIAAAANAIVITDGEGRVEWVNEAYHL
LSGYERDQIIGTLPAVLAGPSAANPTAIEAWPTLRAGQVWRGEIHETHRD
GRTYIVDKTITPIVDASGRLSHLVAVDEDVTARKKAEERIRYLSNYDTLT
RLPNRVLFRDRLYQAVVQARRGHGGLAVMFIDLDQFSLVNDTLGHAAGDH
LLMTIASRINAAAEEADTVARVGGDEFALIQTALTSADSAASLARRLIDV
IRTPVDLGGREVVIGANVGIAIYPQDGTDPDNLMKNADMAMYRAVKSGDD
SCCFFSNEMNAEAAVRLSLEEDLRRALDSGDQLFLHYQLQFCIESGRPVG
AEALARWTHPTLGAIPPTRFIPVAEDSGLILALGDWVLGTALAEYARWRA
AGCGRLTIAVNMSAVQFRQKGLVERVTDLLAQHGVPPEDLELELTESMLM
QDADQAVAQLTALSQAGIRLSIDDFGTGYSSLGYLKLFRVDKLKVDQSFV
RDVTEDGNDAVIARAIINLGHSLGLEVIAEGVETPEQMAYLRREGCDVVQ
GYLMAYPEPGETVARRLLALDALSAAPAAVVMSRSD
>Rru_A3423 Periplasmic Sensor Signal Transduction Histidine Kinase
MRADPGDRPDSTQEPKRRRHRRPRGLLRSPLSRRILAVNLIAPILLAGGF
LYLDTYEDALTASTFQAMRTEADLIAAAIGEGAINLEVSVEGPVVRATHG
INPEMSRQMVRRLANLAEVRARLFDTSGTLVADSRRLVGYGGMVQVMDLP
PPVLPDNGVGLLRRFYDAIIHPSSDLAKLQPYIERPNQSAEDYPEVLRAL
TEGESGFFMRVRPTRDRVLSVAVPVQYYKQVVGAVMVSRGAEEIDETLFE
MRLGVIEIFAFTLALTILLSFYIAGTIVRPLLRLAGAADRVRHGKAGRHE
AIPDFSNRRDELGDLSAALREMTEVLWARMDAIERFAADVAHEIKNPLTS
LRSAVETVARIDDPNQQKRLMAVIVDDVQRLNRLITDISDASRLDAELSR
AEMESVEIRPMLEMLAEVHAAEAEQRGVTIKVMGDAGDALGIEGLEGRLV
QVFRNLIGNAVSFSPPGGTITLRAWRTKGKVVITVADDGPGIPPGKEADI
FKRFYSERPREEKFGTHSGLGLSISQQIVETHRGTIRAENRRDGEGKIVG
AMFTVELPSPTPGK
>Rru_A2837 Response regulator receiver domain protein (CheY)
MAVDLNMKILIVDDYKTMLRIIRNLLRQLGFNNIDEAMDGSAALQMLRTN
GGYGLVISDWNMEPMTGLQLLREVRADGKLKSLPFIMVTAESKSENVIAA
KEAGVSNYIVKPFNAETLKAKMQSVIGEF
>Rru_A0521 CheA Signal Transduction Histidine Kinases (STHK)
MDDLLSEFLTETSESIATLDVELVNLERNPNDKGILSNIFRLVHTIKGTC
GFLGLPRLESLAHAGENVLGKFRDGDLEVTPAAVTVILHTIDRIKEILGH
LEANEVEPEGDDKDLKAHLNAFAEGKQPSVAAMAPAPARAAGSGPAISEG
GYPVAAELLAEVSEAVAKGKRAATEAELAAELAAELAAAEKAEQAVAAPV
PEVIPEVKAATPVVQPAKPPAVTAAHDTNGPNGGGGGEQKEGSVASQSIR
VNVELLENLMTLVSELVLTRNQLLQMVRGSDDSEFVAPLQRLSHITTDLQ
EGVMKTRMQPIGNAWAKLPRIVRDLSIEMHKKIDLQMYGADTELDRQVLE
MIKDPLTHMVRNSGDHGLEFPDERAAAGKPETGVIKLNAYHEGGHIIIEI
SDDGRGLNLERIRAKALSNGLATEAELENMTDQQIAQYIFRAGLSTAEKV
TAVSGRGVGMDVVKTNIEKIGGTVELKTWPGKGSRFVIKIPLTLAIVSAL
IVEASGERFAIPQISVLELVRVTANSETTIEQINTAPVLRLRDRLMPLVS
LSALLRLDDGDDEELGKTADATAGRRDETFIVVSQVGTYTFGIIVDRVFD
TEEIVVKPVAPILRHVSMFSGNTILGDGSVIMILDPNGIASATGEVTMGS
ASGTTEAAQSHEFVGEDRTSLLVFRAGGKDLKAVPLALVARLEEIETDKI
EHSFGKPVVQYRGQLMPLVGIHDEFTLAGEGRQPVLVFSDRDRTMGLVVD
EIVDIVEDHLKVELRADLRGVVGTAVVNGKATDIIDTGYYLTKAFGDWFG
TMKSDAFGEQKSAIRVLLVDDSPFFRNLLTPLLSVSGYAVTAVESAEKAL
ELREKGHSFEAIISDIEMAGMDGFSFAAAIRADGRWGNLPLIALSSHATE
RDLQRGREAGFDDYVAKFDRDSLLEVLGQLVGGQPALVAQEG
>Rru_A0125 diguanylate phosphodiesterase (EAL domain)
MSRVGVGEQGLEAGGEDISAPKTGLLGGLRGLAVLVTWLRDTLRQPLGYR
LARLRPNVLRRRSPATRAAIHDLVAGLARDPEIKAFLLPDDEILVIHHQT
DGPRVLAALNAICALDPRDRACSAPLELGRDSPLVAWSQITTDGEALLAW
AEQALSEALSKTGPLGTPGGPEIGLDAPLLASGAGDRGTSRGRPLTPEGL
AKLENALVLADLSNQVRRQRMVMIGDDGALTPVMTELFVDIAELRQTIAP
QVDLFSNAWLFRRFTATLDQRMTAFIGGYVAAVETPAVSLNLNVATLLGP
GFGPLREVSRRFPQMTLIVELRLDDVMADLPAYLFAREYLHHLGFKVLID
GLGPQAMLWLDRKRLGADYLKAQWSHDLGAMVDTAEGAALAERIRASGSA
RTILCRCDDSHAVEVGRKLGCGVFQGFYLDDLLREGRPHDVGGRREEGG
>Rru_A3111 Metallophosphoesterase
MSNEGGLLALLRGWFGGVSAKRWRTPPSTRLYAVGDIHGRDDLLERLMAR
ILEDGRAGAPERRVVVFLGDYVDRGPGSADVLDLLAGWAPPDLQVVCLKG
NHEAMMMAFLAEPEGGKRWIASGGAAALASYGITLASTKGGDLRRAGEAL
NRVLPAHHRRFLEGLALSHVEGDYCFVHAGLRPGRALKDQDADDLLWIRK
PFLTFEGTFPHMVVHGHTPSREPVIRPHRLGIDTGAWTRGMLTCVVLEGS
ERRFLSVKDD
>Rru_A2505 Response regulator receiver domain protein (CheY)
MTEEPATPGQGDLSLFNWSEERRLGVRLMDRDHQVVCHQAGLLAAGVDRG
DGAAMAAGARFLQDYIPRMFEREDRLMANTNHPERGAHQDAHRQLLVGLM
TRTSGPIETAASVLAAVETWIRGHIDAHDRPLARHVLEAAIDPFAATGGR
RLLGSVQWDRLSVMVVDGQFAFRRTARDMLVALGVATVIEARDGVEALKQ
LPNHKIDALLVDLYMAPMDGVEFTHLMRNIADSPNPRALIILMTGAEVSQ
GLINRALDAGIHDLMKKPISQDALRARLERHLLAPLPFHEVGRYLLPVHP
DRNATLLRRQAASLSR
>Rru_A1074 MotA/TolQ/ExbB proton channel family protein
MGWDRRRSPLSPGGPSLPPSPVPPRPALHQPDATMRRPRRFLLRMALFLV
AVGAVAAVLGPSMARFFMANPALNSLILGVGLIGVILNFRHVTSLEPEVR
WITAFSQGKASVSSAEMPRLLAPMATMLAEHKERGRERGRLTLSAPAARS
LLDGIAARLDENRETSRYFIGLMVFLGLLGTFWGLLGTVGAIANVITTLT
ISSDDMTRVFADLKSGLEAPLGGMGTAFSSSLFGLASSLVLGFLDLQAGQ
AQNAFYNGLEDWLSKQTRLGTGGSLGEGEQSVPGYIQALLEKTADSLDDL
QRTIVRGEENAMATNVQIRDMAETMATLTDQMRTEQAVLLKLAETQADLR
PVLAQLSESLASGAKPAAAEDPLSGVAGHVRNMDAAVTYMANQMVQGREQ
LLKELRAEIKMLARTIAATAAPGTSGLGGGGGPSMPPPRGER
>Rru_A1293 chemotaxis sensory transducer
MSFINNLRIPQKLLIAFCSLALLFVGAGIISLVQLRAVSGATEIIVENWL
PSIRALAALELQVIEHRRFEMSHIMTTDAPGMAAEDERIRKQRELIAKTQ
ATYEKLINSAEERAIYDRFATQWTTYLALTEQVIELSRTNKNTEARDMQL
GESRAAFNQMRAALVEAIDLNNKGAKKAAEEAYQSDSDAQVLIITVTVVI
LGLVVFFTLLLRAAIAKPIVSITTIMRRLAEGERTIDIPARDRKDEIGDM
AGAVEVFKDNAIRAEQLENEQRAERANREKRSQTIETLMGTFDRAVGNVL
AVVAGAATEMESTAQAMTSNAEQTSRQAIAVSSATEEASAGVQTVASASE
ELAASISEIGRQVEQSNAASRLASEEAARASVTVSGLAETSTRIGTVVGL
ITHIANQTNLLALNATIEAARAGDAGKGFAVVAGEVKSLANQTAKATEEI
SAQIGAVQQATQQAVEAIATIVRRIEETTHISTAIASAVEEQAAATNEIA
QNVQRVAAGTQEVSASIGGVTQAADETGGAAQQVLSAAQSLSRESAELKE
MVDHFLRDVRSA
>Rru_A3322 Transcriptional Regulator, Crp/Fnr family
MTLTNHGAATAVFSGRPFDKRGREGCARDTRTDPLDPCLQCTLGDLAFCN
PLPPDELERLMAIQSSVRFAPPETLFNEGDPALYLLSPVSGTVKTYKLMA
DGRRQITGFFFRGDLFGFSANGAYGYTAEAVTPVTLCRFPLVKLEQLFPG
APVLARSVLQRTLAKLANFHEQMLLLGRKSAPEKLASFLLSLSMRAQERG
DPASPVLIPMGRADVADYLGLTIETVSRTLSKFRVQGLVELPNPSTITLC
DRGALRAIADGL
>Rru_A2023 chemotaxis sensory transducer
MIKLHSIQMKISGLSGACLIIAAATLISFSIYSSKTTQTYVGERTGALSL
ANAEDILRNLATTQAASIKATLNGAFDAARTTANTFGALEDGPNNSPDQA
RAQRQAFNAILLNVLKDNPEFNGTYSAWQPDGLDGQDALFVDGTATGSDK
TGRFLPYWTRGADGTLAIQPLVEYDSEARHPNGIVKGAWYLGPQRTGKES
IVGPLPYIVQGKPVFLATMSVPVVVGGVFQGVAGADYDLSFVQKLAVSVS
ASLFDDHNDVMIVNGDGLVVAHSKYPQSIGKPLGENDPDAAALFPKFDPT
KAVTVDDGATKSLVAMAPIAMGRTGTSWAVVIRVPRAVVLEQAIALETEI
QSRTNDTISTQLGVGVVVAILGIGLVWLSAGGISRPLVRVAQAISQISGG
KTDITIVGLTRKDELGTMARATDALRTSVDEAFKLKQMVELQPTPTLLCH
PADLTITYMNAAGRTLLDHVLKGRGLSAAQAMGHPANEFHPSPGEMRRRA
TTPSAMPFKERFTLDGVIIESNVTPIFDQGGAFLGPMLNWTDVTRYVRMA
DDFEGKVRSVASAVSDSAQKLSHDSEDMRRISEGVSQKSSNVAAASEEMG
INMQTVAAATNELTASQGEIARTISLTANGATKAAESVTTAVDRVRGLEK
AAADIGAVIALITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKAL
ANQTARATDTIRATVVDMQQWMGQAVDSITEVNDIVIGMREQASGAAAAT
EQQTSATSEITRNVEQASIASREVGLHIGSVASEAMQALENTQGIKAAAD
DLSASARQLEKEVDGFLSHLREV
>Rru_A2544 Signal Transduction Histidine Kinase
MNDPVVLSELRRRLAEAEETLNAIREGEVDALVIGEGGVDEVFAIGGDTE
SYRTFMEAMDTGAAAVDEDGRVLYANSALCRLIDHPLPTLQGKPLVSFFD
ARAAAEIGQMVGKTANQREKVEISLKDAATKMAQVFLVSAKPVRLGLVQG
HAVTFTDLTERVRSETAERAERIAAAIIASANEIVVVCDRVGMITHANSA
ASAIYDGDLIGKMFEDAIPLTFTDAPDLMSGGALIDLALNGQARQGIEAI
ATRAPKVKDYLISAAPLQVTEDQISGCVLTMVDLSQRKAAEHQQLLLMRE
LDHRVRNTLALVLSISNRTLSNEDTLQGFHQAFTQRIHGLAATHSLLAKQ
GWTKLSLHDIVRAELAPYVETDGTRLRLEGGEVALIPRAAIALGLIFHEL
ATNAVKYGALSREGGHVLVAVRGPTADGAAMRVDWVESGGPMVSPPQRKG
FGHTVISHSLAYSSKGGTDLSFPPEGVICALRIPMEDIP
>Rru_A1554 chemotaxis sensory transducer
MRIFRVAIAQPSPETPVQPACPPLGDSGAPGAAGPTSETLTALINDVLHR
VETLSIDLADVAGDIDTIARFVKRQEELFSHLVVLAQDVQGAIDRIDNAG
QSTNAVTKDASDSMRRSGEAIRAAIENIEGLTRAVSGIAGRLSTVEQSLD
GVNQSSAIIRTVAQQTNLLALNATIEAAHAGDAGRGFAIVAKEVKTLAGQ
SQGAATGIQKTVNSLSSSLGELIETSGTIVANAQEANNGIAVINEAVSGF
SGSISIVDRHVDEIAGATATTKDRCADIVREIHQAAEGVSATSRNLASAD
QRVSSIVSVGEALIATILESGVETPDTPFIAAVRDAAEQVAAALEGAIDR
GQISLAALFSEVYTPIPGSDPAQVTTAFTDLVDRLFPPIQEPLLTLNEKV
VFCAAVDRNGYLPTHNQKFSKPQGPDPVWNNANSRNRRIFNDRTGLAAGR
NTRPFLVQTYRRDMGGGSFIMMKDASAPIFVKGRHWGGFRMGYRL
>Rru_A0120 chemotaxis sensory transducer
MGKALEIDLGNRLQALDIDGPTREILRECRPIIEKIIDEAVLDSYNKILA
YPEVRDAYAGMKIEDACQAQRTHWIDDVFAGTFAEEQIRNGVEIFSKRQR
QGLSLRWYFCFYSNILRCMIAAVYPQYRRDKEKLQRVIGALTRTVMFELE
IASTAYMHSAQEQVAVALNDAAGQFERQVAGVVEQVASSIGHVSTASGLL
AVVANQTARESDTAATAASQTSENIGTVATATEQLTSSIQEISSQVGKAA
AITDSAVEEAQRTNDLVQGLAGAVGKIGDVVRLINDIAAQTNLLALNATI
EAARAGNAGKGFAVVAGEVKSLARQTSRATDEISAQISAVQKATRDAVAA
IQSIGGTIVTINQTSTAVASAVEEQRAATREIARSVDEAARGGALVTNTI
GEVSALAGKTDSTMRDLSGTVSTLSDQATVLSEQVDQFLRKIRSA
>Rru_A1659 Putative diguanylate phosphodiesterase (EAL domain)
MQIDSRDRIVFAAGPFEAFIDRRQDDLRGEEVATLMVPEDRVLMGQCLKL
VRRKGRASGEVVRLYRPRGAPLSMDFAGYTLDQQSFIALRLTSHRGYGAR
DGIPRDPQSGLLPPQAFSELASGKIKQSQETGQDFGVTVIDLPGLGGLCD
RLPSPGALGLLRSVGASLRACAFDDNSATEIAQGRYGLVHDGAADLEALR
HDLSEIVRQHDPDGEEGRVETSAIDLEGIDQIDEGDLAKGLIYAINQCQR
ADGAAISLRMLSTSIPQLVHQGINEVALFRRVVANRSFDIVLQPIVSLST
GDIHHYEALCRFDSSRPDLSPYRAITFAEETGLIHDFDLAMAEKVLGWLS
GKPRNSDAYRVAVNISGFSIGVDSYVKGLLDLLRAEPWTKGKMLFEITES
SKMTDLDSANSFIGSLRDSGYQVCLDDFGAGAASFQYLSALEVDVVKIDG
SAVRNAMRGPKGLAFLSALTELCRRLGVTTIAEMIDTKESLDFVRSCGCD
FVQGYLFGRPSADLKSFQPLPNLGLLRGSPDRLRGRAGLS
>Rru_A3374 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain
MRRLVRSRNGTVGRVSEGVRGGHKRLRGANRPWPGVRRTRAADAMGELID
RLLNGVLIVDSTLRPLYANREFLRLLGLPDADTLLRPAGLERFLPEDNRQ
VLLDMTHRLFSHQSQRASQRLEVVRADNATLWLDFSAALGRWAERDVVQI
AVVDATERVTHESELEFNRAQLENQAVELVALAEDLNAEREQLETARLDA
DEGRRFLQTLIATIPNPFFHQDLEGRIRGCNAAFAALHGRDHRTDMFGLT
VADLTDAAFSSRTERLDAELMAKGGNVSYEAVFADAEGRARTMIYNKAVL
TDAAGQAVGLVAVITDITEQKRMEEALRRLATTDPLTGALNRRAFMEAAR
RDLALAQRHGEPVTVALADIDHFKRVNDQHGHATGDEALKTFVATVHGAL
RASDVLGRMGGEEFALILPHTALASAMLLADRLRQTLANLRVPCPSGEVE
FTVSIGLAELGTHGTTIDTLLQAADEALYRAKSAGRNRVIAA
>Rru_A2515 extracellular solute-binding protein, family 3
MSLSRPLGQDPAPWPVPPASRPPFWFQGRSPRPGLAFAFGLVAALTLAAP
ALAANGDTLTSIRDRGSVTCGTNPIPGFGFPDSDGNWRGFFIDFCRALAA
ATLGDPTAFEVVPVESNSRWEALNSHTTDVNVDGSTWTLSRDTALGFDFP
GVLIYDGQRFLAKPSVPEGSVKAAAGLRVCIIMGTTAEVNLRDFLKKNDL
EMTVIATESDEGAWTSFLKGRCELFVNDGIGLALRNALHMTPPRVNHLMT
EAISKEPLGPVVRGDDHQWLEINRWVLNVLIAAEEAGISSTTLVDPSPTA
DLSSEDRVFVGGPEDNAAALGLEPGWARRVIAAVGNYGEVFDRNLGKGSE
IGLDRGVNALWSEGGLMISPPLQ
>Rru_A1712 chemotaxis sensory transducer
MAFSIFGGGAANRLTALSTSMALIEFDLDGTILAANTNFLTVMGYRLDEV
RGKKHSLFVEPAERDSAEYRAFWDQLRRGTFLAREFKRVGKGGKEIWLEA
SYNPILGLGGKPTGVLKIATDITRKKAEAVELQEKVAAISRSQAVIEFAM
DGTILTANENFLKTMGYRLEDIQGKNHSLFIAPGERDSAEYRQFWDILRR
GEFQARQFMRIGKGGRVVWLEASYNPILNLDGKPYKVVKFATDISGRKEE
NAALAKQFETGVKATVETVASSAGKMQNTAQAMAAAAEQTSQQSSIVSTA
AEELGTSVSEIARQIAQATRVTDDAVAETKASEKLVGELVTAADKIGAVS
QLIADIASQTNLLALNATIEAARAGDAGKGFAVVASEVKSLANQTAKATE
EIEQQVSGIQDSSRATASAIRQIGLVIAQVSEISASISGAAEEQAAATRE
VSQNINGVEQAAAQTGRSSTELLSVAQSMSHQADDLETRVDAFLRKVRSM
>Rru_A3449 HPr kinase
MTPGLPSSILGDMDKPPPTVHGTAIARDGWAVLLRGPSGSGKSDLALRMI
DRGAVLVGDDQLIVLAGPAGPALAPPDPLRGLIEVRGLGLVEMPAAIDPV
PLALVVDLVPGGPIERLPDPAQADIGGASVALVRLDPFEASAPVKLDLAL
AVARGDSKLAC
>Rru_A2606 Periplasmic Sensor Signal Transduction Histidine Kinase
MIKVRRDHAPPTRSLIQVLSLTTVGASLIFLLMLSVLWGIGRAQDMAISA
DILRSSLLIERQQALRGTVERALRVVGGLRAQAERERLDALKAEVIQARS
LANHLLNRYGKAPSSPLSASPPRPGAAGAPGLIANALQAFDAGAEDRGLF
VLDAAGGSPAGSPPPSAALVAELWALARGGGGYLGSGEGAARRIYYVEAF
APFEWVIGSWRLVEAGEAALQRAALETLAAENGGVGDIFVGTWEGVALLG
PGQGRDQRELTDSDGVKPVALLIDQARSGRPGFVEYRAPYGSRVNARKLS
YVAAIADWRWYVGTGVMLDDIDALANNRLGVMRTALAWEVLGGIALIGLA
GLTITWGLLRVRRRLEASHRRFLAFLDEAAQGRGEIDPAAMEFLEYRDLA
ASANRMVEQRRDALSRLAERGVELQRSNRELERFAFIASHDLQEPLRSIA
GFIQLIERRLGPDIDPEVAEFFSFVVGGAGRMRDQIEGLLEYSRLDRAQL
ERTVVVLDEVVAEVIAELEPQIAAAGACVRVEVLPVVSADRGQLRLLFTH
LLDNALKFRNPDRPPELRISALRDVDGCWRISVGDNGIGIAEAYHAQVFD
LFRRLHSAGTYAGTGLGLAVCRRIVERHGGDIRLRSVPGRGTTVSFTLMA
PADGPHAAGWNRAH
>Rru_A1388 Transcriptional Regulator, NifA subfamily, Fis Family
MLMDYTYAIDLDDFVDDSTDCKTGECRVAVLPILFQISQIISESEDLPRS
LAIILKVMQQRMRIGRGTVSLYDRESGKIFVHESFGGRDDQQALGASGPG
RGITAKVVDSGKAIIVPELRDSPTKPNRTQLQADGSDLAVSFFCVPILRG
RKVLGTISAERVYANRRLLKQDVELIATIASMIAPAVELYLLENIDKVRL
ENENRRLHDALKSRFKPTNIIGTSKPMQEVYDLIHKVAMTKATVLILGES
GVGKELVASAIHYNGATAEGPFIKFNCAALPESLGESELFGHEKGAFTGA
IAQRKGRFEMADGGTIFLDEVGELSLAMQAKLLRVLQEKTFERVGGGRSV
RVDVRIIAATNRNLPEMVEKGTFREDLFYRLNVFPITLPPLRDRGSDVIL
LVDHFIARHAAEGGREAKRVSTPALTMLMAYHWPGNVRELENVIERSVIL
SEDGVIHGYNLPPSLQTATETGTSFGCGLEAKLQAVEYEMIVEALKTHGG
NATEAAKELGLTRRILGLRMEKYALNYKTYRKR
>Rru_A1219 Sigma54 Specific Transcriptional Regulator containing PAS, and Fis DNA-binding domains
MDTLPPIIGEDPAFLDVIEQASRLAPIDRPCLVVGERGTGKELVAARLHY
LSRRWQGPLVKVNCAALSDTLLESELFGHEAGAFTGAQRRHLGRFERAEG
GTLILDEIANASQAVQEKVLRVIEYGELERVGGAATLRVDVRVIGVANVD
LPKRAAEGGFRADLLDRLAFDVLTLPPLRARPGDILALAEAFARAMAGDL
ERPAPAFSPAARAQLLGHGWPGNVRELRNASERTVARLPREATVIETVVI
DPFASPWCLAAAPAAPPAILSPADGALPPEGQPFAAAVAAYEQGLLRRAL
AAAEGNQGKAAQALGLGYHQFRRLLARHGLGPGAER
>Rru_A0441 chemotaxis sensory transducer
MGVFHRAGIAFQITLVAVVAVVGFLAVGAVFFANQTRLERYRQEAGAAAV
AADLTADLSAALVEARKREGLFLLRPAEAEITAHGAMLTKAAEALTALDR
ALAGRAEAGRMSAVRQGVGEGGEGFGRLVALLRKVGFSDEGGLRLRLGQS
VRAVEAAVEEYADDNLMVPLLTMRRAEKDFLLSLRPGFIDEFAKARDKVL
ALLEWSNLPADQVPRARALITTYSADFAELARSRQELEGEIARQAALYER
LDPQVRELAQALEARRGEAEAAARRAGVETGRLMLGAMIGAPLLVVLAGL
ALARRIQAPLAAITAAMTALAGGDRARAIPETDRRNEIGAMARAVATFKD
AMVAAEALAQEQAAQERARGERAERLAALTRRFEQSVGGRLGAVDDALAG
MDGTGKAMQGAAETVADHSRAVASASAQASANVRTVAEAAAALGASISEV
AAQMDRQSTEAERAESRMDQANALMEGLSASAGRIGEVVTLIADIASQTN
LLALNATIEAARAGEAGKGFAVVAGEVKTLATQTGRATGDIAAQVAEVQR
ATAAALDAIARVGESFAGIRAVSVAITAAVDAQRAATAEIGRNVDEAAMG
TRQVDGGIDRVRDAAEQARRAAADVRAAAAALTEQSGGLHAEVGGFLAEV
QSV
>Rru_A2326 Response regulator receiver domain protein (CheY)
MSPLSAPCVTPRVLVIDDSITMRLFYRSVLEAAGFEVEEAINGVEGYEKV
LSNDFDLLIVDINMPKMDGYSMLRAIRRDSAVLGVPALTISMESGDADAL
KAFEAGANYYLVKPVAPAMLTEVAQLLAGVGR
>Rru_A3543 Periplasmic Sensor Signal Transduction Histidine Kinase
MDRLTPSLGRLIGAAMLVCVPATAVLLGLTLWGRLSVGVALVAGVLIWTL
TALLLRSILREFMVVSRHIRGLGGRSEAGEGAAPTPRLEIAQGLLGAAQH
LDRGWRRRTQALRDQLRSDEQVLNTLPDPLLMIAKEAVVTRANEAARSLF
GRDPAGQEIITLLRDPGVLDSVERVLAGGTAPRQTIWVMPGAVEREFEVR
ATPLPSPSIDGSVALLGLHDITALRRLEQMRADFVANASHELRTPLSSLI
GFTETLSTSAKNDPEARERFLAIMLEQGRRMQRLIEDLLSLSRIEMEEHT
PPDEAVVLPGLIASVTRFLEIKAREKTMTLSVEAPPDLPPAIGDADQLSQ
IFQNLLDNAIKYGRPGTPVEVRLAVVERGPPAMPAGLRAPCLRVSVIDHG
EGIAKAHLPRLTERFYRVDKARSRALGGTGLGLAIVKHVVVRHRGAMTIE
SDPGLGTTVSVFLPLHGPRPPRRAAPSA
>Rru_A3001 Carbon starvation protein CstA
MDNALTFVISTLCILALCYRFYGVFFVRKVLRADDSVVTPSHTFEDGKNY
VPTKKWVNAGQHFAAIAAAGPLVGPVLAAQFGYLPGFLWLLVGCVVGGAV
HDTVVLFASMKHNGKSLSNVAKAELGPVAGWCTGLAMLFIITITMAGLSM
VVVHALERNPWGTFAVFMTIPIAIAVGLYERFTGNHKGATWVGIIAIMVA
VLAGPYIQGTLLGDWLTLRVDSVALALPIYAFFASALPVWLLLTPRGYLS
SFMKIGVFGALVVGVVIINPTIQFPALTDFIHGGGPVLAGPVWPFISITI
ACGAISGFHAFIGSGTTPKLVDKWSDIRPVAFGAMLAECMVAVLALVAAT
ALHPADYFAINASPAAFASLGMEVVDLPHLSQEIGMDLAGRTGGAVTLAV
GMTFIFTKLPWFATLSSYFFQFVIMFEAVFILTAVDSGTRVARYLIQDLG
GDLYAPLKRLDWIPGSIGASVAACALWGYLLTSGDINSVWALFGVSNQLM
ASIGLIIGATIILRVAAKRIYMLTCLIPLAYLFVTVNYAGYWMIANVYLN
TQARGYNPINAGISAIMMVLGLIILITAFGKWKTMLALPKSLRSGEVPAP
SLP
>Rru_A0558 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
MSASPQAPTPPDRSSPSVSSNLGAEGAGGRRLCGSVVLSAGKILSVDKTL
WQALGLSAESLSGLPFLSFLEDPSREVLAARLRLAGPPWDLRTALRVDGR
AIPVVLRGDGAADRTTDTPLQVILITLAPQEGEVEPVSQSALFDHIPLGV
MLSDGLGRIAYANPAFLAEDIAAVRALLGATPQALATGYLHEGLARTLWE
DLLCGRVWRNDVDLPTADGQRTHSRLTIIPLRRDDGAVDRLMTVIEPRSP
ATDSQAWQQVNHDTLTGLPNRVLFQDRLLTALASARRRNDQLAVLFVDLD
HFKTVNDSLGHSFGDQLLQQVATRLSQCLRDSDTLARMGGDEFTIALTGD
GHQRDYAMIANRILETLRRPFTLEGGHEVLIGSSIGITLFPNDAEDVDTL
LRNADTAMYRAKASGRNAFQFFTEEMNREIQSHLDLENALRRAVRAMDLT
IHYQPVVDSATLAVVSAEALVRWPLADKGFIPPSRFIPVAEELGLIDEIG
GWVLWNACTQAKVWQAQGAKAFRVSVNVSWRQLRNPDFALRVREALEGTG
LGAAFLELEITEGMVLRDPQGIAPALMALSEMGVALAIDNFGSGHSSIKC
LRQFPFSILKLDRSCVADVLTSHEDAVLVETAAIMARRLGLTVVAEGVET
HAQLEFLREHYCDLIQGYLFGRPLPPEDFARML
>Rru_A0327 Periplasmic Sensor Signal Transduction Histidine Kinase
MMMVGAGSFQTPGGVPPLPPPPREGATGRSLSAKARAPTVLGLLAAVVLV
MLTLGLGANLVFLYRDGVERGEAQVLALRDGAREQAAAAVSRIDLLLSGL
TEGLALRPEVERWGDAGIHALLVRQRALLPMVRGIIVTNEAGRLTHDSEA
AIPANMDLSDRDYVRALRADPQSGLYIGEPVRGRTSGRWFISMSRRFTDQ
QGAFKGVVTAVVDPVALGTVFSPFLPGAGGELEVLRDDGRVLLHLPDFER
FMGAARGHQSFFRDVLAAAPSGSIRVAGSTEESVYRLEGGEAGLFFTWAT
VPGSPLLVTVSASYDGLLRSWWQVLPYHLGAIACIILVILALVLKVHRQI
RHLNGLIVALSNREAALVAARRSSEEANRAKTLFLANMSHELRTPLNAII
GFSDMLANGIHGALADRQQDYARDINLSALHLLDLINDILDVAKIESGGY
LLHERPCNLAAIIRAAERMLGPRVREKGLVMDTVCVDGEAWVMADERAMQ
QVLLNLLSNAVKFTPEGGRITVSLGLNEGGGMVLVVGDTGPGIPAEHLAL
VLEPFYQVGEVETRSHEGTGLGLPLAKALVEKHEGALRLDSQPGQGTRVS
VTLPAARVLPPQRPPVEAKP
>Rru_A1245 Transcriptional Regulator, Crp/Fnr family
MTPAFRLPGLAELDAESARVFAGAARSVQVPAGTILFRTGARCESYVLVV
SGAIRVHRTSPGGREIVLYRVEGGQSCVLTTNCLIAARDYDAEGVAETDV
EMIALPAPTFRRLLAASEAFRDFVFAAYASRLSDLLLLIEEVAFGRIDVR
LAGWLAARGDQPIAITHQDLAVELGTAREVISRQLKDFERRGWVDLGRGI
IAPRDPQALRHLAEGV
>Rru_A3283 Phasin
MAKQPETFLDFDFTRYFADLKVPGVDVESLIASQKRNLDALTNANKLAFE
GVQAIFKRQAEILRQSVEESAQAAQDIAKAETPQDKIAKQTEVAKESFEK
SVANLRELVELLAKSNTEVFNLLNSRVSEVLDEAKDLVVKQQNATVKTPA
PRAATTQK
>Rru_A2321 chemotaxis sensory transducer
MALVKKNQVGGAASAKTATTDDVSGGGRLLAEAQKRKARTFARQQKAAER
VAAATSQLASGLAEAASAAEELRKASEQIASGAEEAAGAAQQSMKAVGHG
AGLIIKGKESADSALIKTEALQTMIFSISAQIGNSIQAIGRAAERQTNSV
RMVEELESQAAAISEVVKAVARIADQTNLLALNAAIEAARAGQHGKGFAV
VADEVRTLAETSEKSAREIQDLITQIQTDVKAIAEGITASAATARREVEK
GAQISVQLERIRTDMVAVSAGCRDIVKANEESTAAVKEVQKGSELIAAAA
EEQSAACQETLKTIDQQTAALAQSEQASQELSELADELKNSTDISKSSEE
VASAAEELSSAVEEINRAATQIQVALDQIQKGAQQQAAATQQASAAIAQI
ERGAQVSANRATTTVEKSETTAQLLLSASELINEMIAGVLDSVEAGKRSR
EQMTALEQVSRRIDKIVDAITTVSIQTNMLAVNGSVEAARAGEFGKGFAV
VSTDIRNLARDSAENADRIKDTIKSIQDQIGSVRRDLDEISAAATLEGEK
NKAITVDLETISRDIDQVLIGGREILASSDEIVQVVKEVQTGVEQIAAAA
QQTTRATLEAGNAAREQSQGAEELAAAIEEIASLADELQAGA
>Rru_A1405 MCP methyltransferase, CheR-type
MTTTTGNLDHLSMRDFRRLATFIHDYSGIKMPDSKKTMVEGRLRKRVSAT
GAAHLTDYCRRLFDEGGLAQETLYLIDVITTNKTEFFREPQHFTFLAERA
LPQIVAARRAGPQTLIKVWSTASSIGAEPYTLAMVLADASQKLGGFRINI
LATDISVRVLETAATAIYPEGMIAPVPMDMRKRYLMRSKDATRALVRIVP
ALRRIVQFGRLNLMDSSYPVDQDLDIVFCRNMLIYFDKPTQQAVLTRLCS
HLRPGGYLFLGHSESLAGFGLPLKAVGTTVFQRE
>Rru_A3771 PhoH-like protein
MSDEETRSTRSYDDNGALQILIGAAGDNLDRLEQVLDVGIAMRGNRLTVN
GPADRVRTAWQALDSLYTRALGGEGIERGDIDAAVRMAGEETVPVVAIKT
RKREIKARSPMQARYLETMLSHELVFGLGPAGTGKTYLAVAMAVSMFLQR
RVERLILSRPAVEAGERIGFLPGDMRDKVDPYLRPMYDALYDMLPGDEVV
RRLDSGEIEVAPLAFMRGRTLANAFVILDEAQNTTPTQMKMFLTRLGENS
RMVITGDTSQVDLPLGAKSGLKDAIEVLDGDPAIGKVTFTHKDVVRHDLV
TRIVRAYDRRDGTLETSTRHAR
>Rru_A3396 Autoinducer synthesis protein
MVILTDRENAICNAFLLHSFSELRHEVFVNRLKWPLQCPPGREIDRFDDQ
DAVYMTISGVGGRVVAGLRLLDTVKRSLLNEVFPMLVDGPLPRDPKVMDV
TRFAVDHRPEYVEGTGNLCGLLLCALQDYGLARGLTGYVSVSDVRMEPIL
RRGGYRFRRMGGMIEMDGTGVVALEVEISPEVRAIARRRAGVSERVLVDE
RLRSAA
>Rru_A1677 Signal transduction histidine kinase, nitrogen specific, NtrB
MVKISALTRRAPVPSIDPATVLSAIASAVICVDEADRVQFVNAAGEQMFE
STWALLRGMALSDLIPPDCPIFGLMEKVRRNHSTFSEYGVQLDTPRTGQR
TITVRVSPLAEYENWVVISLHELSMALKIGQQMSHRNAARSVTAMAALLA
HEVKNPLSGIRGAAQLLEANLPEEDHQLVRLIIDETDRIVALVDRMEVFS
DNMPLAREAVNIHRVLEHVRMVAENGFARGVRFVETYDPSLPAVLGSRDQ
LIQVFLNLIKNAAEAIGPGGGEIVLSTAYQQGLRLRVPGGEVTDLPLVIS
VRDNGTTGISEDLRGNLFDPFVTTKPKGSGLGLPLVAKIVNDHGGIIEFD
SVPGRTVFTVMLPMVR
>Rru_A1160 chemotaxis sensory transducer
MKRTYGISLKLMSTAILTVVGFTIVAGMALYQLRTTMIADRVDKLTNLTE
IAEGVVKSFYNRAQSGELDEATAKKQALNALREARYAGNEYFSIFDQNGL
CLMHAARPEREGRVLLEDKDANGVQIVKELVKVAAVGGGIVSYKFPHVGE
TTPVPKMSYGNDFKPWNWVLVTGIFIDDVDHAFYSIAARFALVLGVVMIA
AVGLVIALSRNIGGGVIRLVKVTERLAARDFSVEIPATDRGDEIGQLAKA
VAVLRDGAREADHLRQRQDGLKAEAEAERRRAMLSVADGFEGSVKRVADT
IAGAANQLEDAAKAVSGAVDTASHQATSIAAAAEQASANVATVASAAEEL
TSSIQEISRQVHQSSTISTNAVKEAQNTNELVMGLAATATRIGDVVKLIN
DIASQTNLLALNATIEAARAGDAGKGFAVVANEVKSLANQTAKATDDISN
QIGAVQSATGQAVDAIRGITGTIAQISEIGETIAAAVEEQGAATLEIARN
VQQAAAGTQEVTSTLSQLSAVTAQAGSSAGGMLSDCEAMVAEAKTLRGEV
AGFLSGIRA
>Rru_A2594 Putative diguanylate cyclase (GGDEF domain)
MLALTRLLLLVLVVACATPAFAEERGADHILARAFLEDPAGVLTIDEVAR
GDFTPFGPNFSKGYTQSVYWVRLLVRASAAPEKTVLFIRPSFLNEVRLFY
RDRASPDGWATRVSGNRYPFSERDRKSVALGFVVDVTHPQEEFYLRIKTN
TQMQIDVQAVSPDVAADTDSRRDMVMVFFVTSMILMIFWGVNEYSFDRYR
IFALFCIHQLAFTLFGISAVGYFSPFWVMIFPGIVDRAFYFLYMSISFTL
ILFCRELFKPYQPHPVLAKGLDLARWAFPLQIIALIAGYDALAVISNALL
IKGALFYFVFVAFSLKVDLDPTRRTLRIFFIGIALINLIFWMTPRVGGEL
KWLGLSAVQALVIDGFVMGILFAWLAHGRGRQVREDAQRKIRLVKESYLA
ERDLKARAEREARVDYLTGVLNRRSFFELAEGELARSIRFGRPLAVLMID
IDYFKAVNDTWGHGVGDEVLQNVAGLIGQTLRGADIFGRTGGEEFTAVIV
EASGSEALEVAQRLCAVVAQGKIVGPGGEAIGVTLSIGVSLLRGRDMAFE
ILSREADQAMYGAKRAGRNRVVVHRDAWGALG
>Rru_A1052 Response regulator receiver domain protein (CheY)
MARDDYGAQVEAEFLEEAQDTTSELEVTVGNIRSGAIPAVEGTQRIRTLV
ARLNMLGAATDFPLLDLALRRFRDYIADLDQPTEFNLDDYGTFVDVLRGL
LSGEIESSTDNAEFFRSLPTRRPFDLADVAHLNVEILLIEPQRSSAAIIG
RELQNCGYKVTTVRTAMEALELAVRTRPDLVISSAVLDVLSGIDVGCALA
AMPATEGIPFCILTSFERNNAFLARLPASAAYLSKGGSFGADLAEALRRF
RIT
>Rru_A2763 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
MRSISQSLRGRFLLTALVLAIVLLGISAYGQSLVKAIGAESHRQIQTYYG
SHRLLQETKTALGQVERALHEAMIHPDAIGSVRAAVAGLRAAVGRLTSDP
TLAGQPIFSGLPAAVDEMSTRLDRDLGRWSRGEAAAPVGLVDGLRDVLHL
CERRVYDAMVDKTYLALGTSDTLSIIIWGLTGVIFLIVLAAYGVFELSIR
RPVLRVAEALRAEGRGAVGETDVPMPRTIETWLLVDAFNGMRLQVHSRQL
RLQSVLESTSDGIITVDDKGSIESINGAAERVLGLTRDEAVGRPLGDLIP
LDRLAEDGGEEGALSRRLLALRGREIDLPARRADGAAFHLSLKLSDFMLG
ERRYFNALIADVTDRKAMIDRLTFLAQRDPLTGLINRRSFFDDLEKAVAR
AGRFPAAGVAVISIDLDRFKYVNDSLGHQAGDCLLKEVAEVLFGRLRETD
LLARLGGDEFAVLLHGVNREGALHVAEALRLCLADYAFSYDGKSVEIGCS
LGVATWAADVDDPEDLLARADMAMRLAKRAGRNRVHLFEEGDLEVRARVV
ADAGYSKLIDRGLRNNLFRPVFQPIIDVTSGAVVGHETLARLHDPAAIGL
TMDVLIPVAERFGLAVEIDRQIILAVTEALAEDAGWLEGGFLSFNLSAQS
VGDGRIFSAVRRLIATRRLPPQALIFEITETAAIASLAAARTFLKALTDL
GCKTALDDFGSGYSSFTYLRELPVDFLKIDGRYVRDIHHDPVKAAMVQAI
NTVAHAMGMRTIAECVEEASGLEVLRQSGVDCAQGFLFGRPAPLGPWIVP
NPIPKGIGRPRLALVAPEGR
>Rru_A3039 PAS/PAC Sensor Hybrid Histidine Kinase
MGQKEADIATAPTSETPWGDLFSQGGDMGRLMAAFPWDSSPLGPVSGWPS
PLRTVVGMLLRSKAQIVLFWGPHLVALYNDAYAPTIGGKHPRALGRPARE
NWGELWDTLGPMLGQVRLTARAFGADNYPFQINRHGFLEQVYFDISYDPV
PGADGEVAGVFCTVTETTARVFAERRLAALRELSIALSTTLARSDGPLSL
GEALPKAALAAIAGHLAQDVSRAAIYRHGSHGKPVLVATTDPAPRTRPQA
TGTTEGSPFAEILERVRREGRPVLWEGGGDGGPQRLLGVPLTAEQGPMGV
LVVSVCPLVAADAEYRKVIDLAAGQISSALTTAAILERERERADDLTRVA
ADNARLYREAQREIADRQAIEAQFLHLTDTLEKMVEERTGERDRLWRVSG
ELMAVGTADSHIKAVNPAWETLLGHDERLLVGAPMSLLVHPDDREPSTAA
LRAMEPQGPPLRFENRLRDSDGTYHWIAWTIVAHGALFYMVGRDVTEEKQ
ARDALAEAHRQLIAQTAERERAEEALRQAQKMEVIGQLTGGVAHDFNNLL
TIILGNLETLIRHIDGASPPDPARVRTLVERATLGAERAAALTQRLLAFS
RRQPLDPRPLDLNRLTLGLIDLLHRTIGEKIALDTRLSMVPVGVLADANQ
LESVVLNLALNARDAMPTGGRLILETTADLVIEAPTAEKRPAKGNPAGAP
PGTYAALRVTDTGKGMEAGVLARVFDPFFTTKDVGQGTGLGLSQAYGFIK
QSGGHIGIESEPGQGTTVTILLPRLEGALPLPEESDRDETPAALGGLEIT
PPPGDPSILLLVVEDDPSVRAHSTASLRELGYQVIEAGNGAEALGHLAAH
PDVALMFTDIGLPGGMDGRQLAELARRNRPDLAVVLTTGYARDALNGNVP
LAPRMALLTKPFSFTALALKVHEVLPPRPAPQSSAPQGPVTVLLVEDDPL
VSLAAADLLLSLGCAVDQAYSVADALAQASAATPDVAVIDIGLPDGRGDD
LAQTLRQRLPGLPIVIASGYDRSEIDARFGDDPRLRFLGKPYLDSQLEAA
LTGALGHPLERSTAPRA
>Rru_A2451 Putative diguanylate cyclase (GGDEF domain)
MTPITKIVALFLTSAILWILITVPLWATAFPRSPLVIIGIAPGLIIAVAA
AITIGWVLAKTDAAHNKIVAALEERAQRDPLTGMLNKEAFITHLEVAFAR
AQRSEKPFRVLFVDVDRFKDINDFHGHRFGDAALVAIAARLRSVLRSADI
AARYGGDEFTIIVEPDEGDTLDAITARISRAFETPVDIDHNGLRESFPVT
VSTGFSRYSDETTSVDALIEEADERMYDAKKRNRKTVSHPGAAGMTPRAF
HGGRPVRSALMMASLLRQPCPGAATRPPSYSALDWSL
>Rru_A0894 stress protein
MAVSLSKGGNVSLSKEAPGLTAINVGLGWDARVTDGSAFDLDASAFLLNE
AGKIRSDADFIFYNNKTSSDGSVVHQGDNQSGAGEGDDETVAIDLTKVPA
DVQKVAFSVTIHEADARKQNFGQVTNAFIRVVNQADGKEITRYDLSEDYS
TETAMIFGELYRNGADWKFKAIGQGFAGGLGPLAKNFGVNIG
>Rru_A0066 PAS/PAC Sensor Signal Transduction Histidine Kinase
MIKWSSFRLEKMEADVGRQDHSPQSLAVLRSHPMVRAILDALTLPAAVIM
ARDGRVLEGNAAFFEALGRPADAVLDHPAPFDVSIADAAATAGGPASPPP
SRRRCAFLRADGVLVQATLGVGVLEGVAGLVLVTLDGIAGADGCPLRRRA
EATVPCAADRFRSLFDLAPIGMAMLDGERRWRQANSVMCRLLGVPFEGLA
AKRWSDSVHPEDRGRDERFFASLLRNDDKASTTNLRLVAADGRVVPVTLS
LGVMRDGPKGQSDQILVLVQDISERVDWEATKAENEARLRSLINATTDAI
FLLDPDGAIRVINRAGARLLGTTARAAAGRSFYEFLDAPQATERRALFGE
VLATLLPVNGIERWGERWLDMVVFPVVDGDGKAMGVTLFTRDITSRREAE
DRARAAERHLLEATELMSAAMLLFDPQGILVLINSACRAALPDLEDILHP
GLSFIELRAAIVARRLFVQAITESQGGIKGGTPGPAPIEVRGKDGRWLLI
RQSATSSGYTLILGTDITELKRRERALADAKEVAEYANRAKSEFLANMSH
ELRTPLNAIIGFSDITRHQMFGRLDNPVYVDYARNIYDSGTHLLEIISDI
LDLAKIEAGELGLDEEEVDAARLVDSAIQMVTPRATSKRIALTNLLTGDL
PRLWCDPLRLKQVLINLLSNAVKYTQEDGAVAVTARLAGGDGLAISVIDT
GIGMDEAGIQVAMTAFGQVESPYSRRQGGTGLGLPLTRKLTEAHQGCLTI
ASRPGEGTTVTILLPAHRLRAAS
>Rru_A2234 Response regulator receiver domain protein (CheY)
MPNGKTVLIVDDDTNVRKAIRLGVEELGWAVVEACDGEEGLRLLGERMFD
LVVSDVWMPKVDGISFLKHAMEIRPGLKVLSVSGGGTAPAALSLKMTEMY
GASDILFKPFTPNELLGKLSALMADEPALD
>Rru_A0259 Carbon starvation protein CstA
MLGWLATAVLGAIALGVVALQRGESINAIWLVIAAVCTYFIAYRFYGLFI
AKRVLGVDANRQTPAVRRNDGLDYVPTNRYVLFGHHFAAIAGAGPLVGPV
LAAQMGYMPGTLWILAGVVFAGAVQDSMVLFCSTRRDGRSLGDMIRTEMG
PVAGAIGLVGVLLIMIIILAILALVVVKALAGSPWGTFTVFSTIPIALIM
GVYSRFIRPGRIAEMSGIGFVLLMLALVYGQSVAESPTLAPLFTYTGTEL
ALIIIGYGFVASVLPVWLLLAPRDYLSTFLKIGVIVGLAIGIVIVMPDMK
MPAVTKFIDGTGPVFSGALFPFLFITIACGAVSGFHALISSGTTPKMIEN
ENQVAFIGYGGMLMESFVAIMAMVAACVIDPGVYFAMNSPAALIGTDAVN
AAAVISSWGFAVTPDILTQTAADVGESSILSRAGGAPTLAVGMAHIFSAV
IGGKAMMGFWYHFAILFEALFILTAVDAGTRACRFMVQDMIGSVVPAFKA
TRSWGNNLLATGISVSLWGYILYTGVTDPFGGINSLWPLFGISNQMLAGM
ALIMITVILFKMKRQRHAWVSIIPATWLLICTTYAGLLKVFSPDPKIGFW
AQAQRFSTALDEGKILGPAKTVDHMRQVMFNNYLDAALAFAFVLVVAATL
VYAVIAIRKAQATSRPTALEVGGPTEVRTHA
>Rru_A2279 ATP-binding region, ATPase-like
MPQVIHQLISSCDRKLPKELWIDFSTLDFTRPSGVVFISNLIQWLDAKGT
KVVLEGLSPHRQSNKFLDDALFFEQHLGTKLRPYSSPRPTTIPLKKVTQA
ESHGWLEMDLTPWLSNHFSVPESSLREFRVCLSELFNNIADHTCCEIGSI
FCQYYPNEGRILISVADFGAGIPSVVRRFSPKISSIDAILKATEDGFTTK
TSPRNRGAGLHYLLQNVVLRNGGSVTIYSHNGIVSFKKEGERICPHPRVV
SGFSPGTLFDIEFRKDTIEVLDDEEEDFEW
>Rru_A1170 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family
MTERPLILVVEGESRTRGALIGALGERFRVLAAEDPPQAERLLAEKDVQA
ILCDQTLAGGGVAFLRGVRARWPEPVRLILAEAAAAREMALAVDEAWIHQ
SIVKPWTAETLAQTLGNAVRLYRLRRDNKAVSLRMRDAPGLHDRAGERRH
RAAGRDQGFDSLLHAAGSPLAVAIALARKVARFDISVLLTGESGTGKELL
ARAIHRGSPRAARRFVVENCGALPDQLLESELFGCKKGAYTGAHEDRVGL
FELADGGTIFLDEIGETSPAFQVKLLRVLQEGEIRPLGSSLTRKVDVRVI
AATNRDLESEVAKGRFRRDLFYRLAGFPLHLPALRERPMDVPLLAEAFMG
ESMRFLGKPVEGLSDGALTRLRRHDWPGNVRELQNEIQRMIALADGPLLT
EDLASPKVGAARAEALGGGVAASGPLKERVEALEAAVIAEGLARPGCTLS
RLAADLGLSRVGLRAKMRRYGLDQAVPDGES
>Rru_A2473 PAS/PAC Sensor Signal Transduction Histidine Kinase
MTNSRVKADQDGAVKPVAGGESLPQSDGSADRLTGLSLHSLVIEHMDQGV
LVADAKTRVIAWNRRACELLGVSADFLASGPTHVEVLGEMIRTGALVTAE
IDPVSTLIAAWLDLPEGERRPLIYERGNPTGLRIEVRTSPLPEGGYVRTF
TDITQRKAAEQALAEKTRLLDTTLETIAQGIILVDPSLHIVLCNRRYREL
LDLPDYMLEPFPPRAADIIAFQIGRGDFDILPADVTHRPFWDRIEGFVFS
PGTTERPLRDGRTLGVETFALDGGGWVRTFTDITEGKRAQDALLVSEKMA
SLGQLVAGIAHEINTPIGTGVTAASLLAEKTQSLVQAVEAGALRRSQLDA
YLHVARESSRFILSNLTRAAELIQSFKQVAVDQATDESRLFKVRDYLEEI
LLSLQPRLKRTPHTMTLECPDDLAMYGPPGALFRVITNLVINSLMHGLEE
GATAPPGHMVLRVGHEKDTDCVVFRYHDTGRGIPEKNLKRIFDPFFTTRR
GEGGTGLGLHIVYNLVTQTLGGSLAVHSPPGQGAIFLIRVPRLSAGLPEG
>Rru_A1004 Lysine-arginine-ornithine-binding periplasmic protein
MKKMIAALAAFGAAGVIASGSAMAASTLDTVKSRGEVTCGVNNGLPGFAL
PDDKGHWTGIDVDICRAVAAAVFGDAKKVKFVPLNAKERFTALQSGEIDV
LSRNTTWTQTRDASLGLIFAGVNYYDGQGFMVKKELGVSSAKELNGASIC
IQSGTTTELNLADYFRANAMTYSPVVFDTSDQTVQGFAGGRCDVLTSDQS
QLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWLNIVRWSLFAQL
NAEELGVTSANADEVKAGTDQNVKRLLGTEGEMGKQLGLGNDWAYAIVKQ
VGNYGEMFERNIGKGSPLEIERGLNALWNKGGIQYAPPIR
>Rru_A0660 Periplasmic Sensor Signal Transduction Histidine Kinase
MAGSAPLNRFFLLTLIGQVVALAVYAAITWMDVRNDAMIQLHYTALTFRS
ASQTTFAGFESSLDALADQLIDSDGLSDPTKGRAILTKSLGTLPAFTVLS
VIAVDGQIRALSEDSHDPLPNLLTNPDTRETFLQALDSKAAVFGEIYYSP
FLKRWVFPIRKAVRDENGTVIAVVAGGIDSNAAVNVWRALDAFADQRIWM
LRADRGVQNIHPISAADMRRLEGTVLPALAGGFPPQEGPAPLIDWPILED
EIAVTLPFPALSGTIVASMKKSLLVKTWVHRMATGGLGFVFLCVVTAVVF
RLAQRSQAVADARREAAEHTLFESRENYRLLYENVETLVRDRTAELAALV
DTLTRTQAELVRSEKLASLGAMVAAVAHEVNTPVGNALVAATTLKDHTRA
FATLTASGRISRQAIAAYVATTEEACDLLVRSLEQAGRLVGTFKQVAVDQ
TNDQRRSFLLDQTIQEVITALKPSFRYRPITVSLDLAAAVTMDSFPGSLA
QVIGNLVTNAVVHGFDDHDSGEIRIITRSVEAQSVTIGVSDNGRGIAPAI
LPKIFDPFFTTRLGQGGSGLGLHIVYGIVTKILGGGLTVDSVEGEGTRFT
LTLPRVAPAEKPVEQPVRPKEALTP
>Rru_A2725 Multi-sensor Hybrid Histidine Kinase
MPTVDPERLKGDTLDLASIGRDFVIGLSLMVVVMLALAIPTILDRPLPDA
VVLAILIPGLALVLLLIRRQRTLFKAIDRSGRRLADSEARIRDFAQSSSD
WFWETGPTLAYTYASPRLLDLSGNDPAKIMGQRLSDLCPDPRSDAAERIA
TRRPFRDLALTVDLGDGYRRHFRLAGRPVLDDRGVFAGYRGAGVDVTGEI
AASARSEALRDLMFDAVDSISEGFVLFDPEGRLVVVNDSYRYAYPQLADH
LVPGITFEELLKVAARGRDLGAEKDLRGWIDERLHRHREGGTNDCKLSDG
RWYRIGEHETRGGGLVKVLMDITEMKTGADRLAQQTALLRTFVDETPVAV
AMVDATLRYLRVSRRWRTEFGLEDRDIIGQRHDVVMPSLPDDWLNDYEQA
LSGVAIEREEVSIDLGGRTLWLRRREYPWFLEDGTVGGLMMTAENITERK
QAELALLQSQKMEAVGQLAGGIAHEFNNMLTSIGGFARMAQRTPERLERV
TMCLAEVVRSADRAAGLTSQLLNFSRRTTEEETLRIPLGALLDELRTFLK
PVLGERIALDLRCAVESLFVLANRDRLHQALVNLCINARDAMAEGGTVII
ETGHGVPPERLRCRHPHLGAGQHAVLRVIDSGCGIPEEDLPRVFEPFFTT
KAQGKGTGLGLPMVYAMAEQANGAVELDSIVGRGTTVTLYLPLADGAAAA
PTIEGPPPLPRGGARILLVEDEDAVRRFAAMVLEDGGYAVRAATNGREAL
DIWEAEGGRFDLLISDLVMPELGGLALYDRLRAHTPLLPAVLMSGYSDEI
PSEDAREGEGARRVLAKPVTPDALIAAVEELLTP
>Rru_A3494 Putative diguanylate phosphodiesterase (EAL domain) with Response Regulator Receiver modulation
MPGRKPIALLIDDDPEIRAFIRAVLTPMDFFCEEFDGFGALRDRTEVNDA
DVIILDLSLGEDDGVEVLRWLADRRCPAGIALVSSFDERLLATALKVGQS
YGLSMLKCLRKPVKPVDLREMLANRPRPQSAIAREELALGIEARELVLFY
QPKIEVATGAVSSAEALVRWNNGRRGLIFPGSFIPLAETSGLMSTMTDMV
LDQALFDRAAWGALGFSPAVAVNLSASALVDLDLPDRVGASLHKHGVPAS
ALILEVTEASAMRDTRSSMDVLTRLRIKGAGVSIDDFGTGYSSLAELHRL
PFTELKIDRSFTMEIHHDKDSRIIVDAIIRMAHAMGLRVVAEGVETAEQL
RILADMECDAAQGYHFCRAVPYDKFIAFLESREPAFADRVISP
>Rru_A1874 hypothetical protein
MMRPWVPLAWGETDPPPMLQGASHKMTASLDHLTKAEHRAIEDLFLQEIT
GRPAGISRRVGRALIEKGLVEETVFIIDYKPTGPVTRDAFRLTPIGHFRY
CQWSDRRAS
>Rru_A0918 Histidine kinase
MNALRLEDLISVEMLQKVQDNFSAAVGIAMIIVDERGTPVTRPSNFSAFC
QTIRTSAARRDQCFQCDDDGGRRAMAMGEPSIYQCHCGLVDFAAPIIVRD
QYLGAVISGQVRLRQGHEVTLEYIAPPDESWRQDAHLIALREKITEIPYV
KLRSAAYTLYHLAAYLVEESYSNAVSQELSAKNLKLMEESKRRVELEKSL
REAELQALSYQVNPHFLFNVLNTIGRLALKEHAPKTEDMLYAFADMMRYV
LKKSRSQIVSLQTEVGHVRNYLHIQKVRMGDRFTFTMDVPAKYDGILCPF
MVLHPIVENSINYAIEPHEADGRIEITARDDGLNMILRVVDNGDGVSPEL
VRAALDGVAEPHGRTSIGLHNVDSRLRHFFGPDYGLTVESPATPGGRHGR
RDALSPGLRSLRHLNACAEERRLCTALSLLKTRNSSARRCAPF
>Rru_A2501 conserved hypothetical cytosolic protein
MLLRKETAESQRASASWSAATQRTFLVVVDNSAEMRVALRYASRRAQNTG
GRVALMIAIEQTEFEQWMFVGNLMREEAREGAEQSLQRHAAAVGAVSGER
PSLFVREGDRIREVFKLVNEEPSISVLVLGVGADPNNPGPLVRELTGRQA
GKLRVPVTLVPGGLSDAEIDALA
>Rru_A2635 Transcriptional Regulator, Crp/Fnr family
MTPEHKDKALAAVSFFDRLPAPRRAELAAKAEAAQLPAGFPLAERGVPAT
GLQVLVEGQVRLFLPPEESTIDIVGPGSLLGECALCDDARHPVSAQAISP
VVILDLRAEDVWPVLLAETDATLALLGAISANLKGLLGRVNDIKLRTTAQ
RLAMFLVSLARQPSAVDRAANGPAEGIILTLPYGKKLIAERLAMTPESLS
RSLARLGREGVRAVDRTTVRIDDLDALALFAGLLPEEENDDDALHRAQGY
WR
>Rru_A1282 Two component Transcriptional regulator, Winged helix family
MANHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDL
ILLDIRLPGVDGLQLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDY
VTKPFNVRELLARAKNLLRRTLSAREASEDENQKSFAGWTLDIPRRCLFA
PDGSDVRLTRGEFELLCCFASRPGRVMTRDNLLDYVSHRDWAPSDRTVDV
LVGRLRRKIEADPKAPRHIITVHGIGYVFADSRHIEPGSPEKSAARQGG
>Rru_A3180 Metal dependent phosphohydrolase, HD region
MSTALFHHHSTLQDQLVAIHAALRASLPDIDRIAVAIYDTKTDALHTFIH
SSDGRHPLDSYATTLTGVPSLAALATSGRIRVLNDLSPLALTGAHHTQVI
AKAYRSSLTVPFYKGKALSGFLFFNSQQPDYFTSRRIDTLALAAEMICSR
VIDTVISVEMLTSTIQIAKDISHFRDEETGAHLDRVANYARLIAETMGKE
PSALPPGRHPVLDDEFAQMIFLFAPLHDIGKVAIPDHVLLKPGPLTPEER
TIMRTHSDKGLAICRRILENVDFISGTQAAMLCDIVHAHHEAWDGSGYPR
GLSGADIPLAAAIVTVADVFDALTSARPYKKPWSTEDAFAYLQEKSGQLF
NPACVRAFLAHRDDVLAIRARFRDEVIPEAFQTPQTPQSKADKV
>Rru_A2546 chemotaxis sensory transducer
MGILFGTIRKQILIPLVGVITIGMVAITFYASIVQFDAAREAGYQVMLEQ
SRAEANTVSHLLDEALTTVRTNADWARSFALGDSFDRQGFAQALLQVLRS
SPALTGVYAGFEPNFDGRDADHAKTALGDDTGRFLIYAYRANDTETLAIT
PLTGDPAEENWYYRPLRDKRESITPPYEFEVDGHRFLMSTVVVPILKDGK
ALGVATADVGLDRIAQEVSRLKPMGVGYAVVVSADGQWVAAPRPELLGKP
VDDPAFREALDKIKDAEVQKTVFTDSLTGEKSVMVMVPIRIGRAAETWGI
AMVVPEAALLAEASAARIRLILVGLGILLAAALTAVLVGNAIVRPVRDMT
QAMTRLAEGALGVSVPGTDRRDEIGAMSKAVRIFKDNAAAMLEMSRKSES
LEREAQESRRQAQARLADRFEGEVAAMIHVLGEAASGLREQAQIMTDTAQ
TVATHAATVDAAAGQTSANVQTVASASEELASSIGEISRQVGQSSSVAAD
AVRQVEQSQQTIVALERSALRIGEVVTLINTIASQTNLLALNATIEAARA
GDAGKGFAVVAGEVKALANQTARATEEIVGQIGSVQAGTRDVVAAISMIS
TTIESMSQISTQIAGAVEEQAAATQEITRSVQQVAQGTQTVTEAISDVYS
GTVKNGDHARVVHRTAEQVAEDAKGLAHKVNDFLADIRGG
>Rru_A3515 Transcriptional Regulator, LytR/AlgR family
MDDFAYNLRRAETGVLLLADDLTVTAVSPGALSLLGLDKPGALLGRPILD
LHPPPLRPKVAVLLKTARGPSGPAATAVLSLRGGPVLIRASALTGQGETA
FALVLTAVGESRETKEGPSARPAPPGYLRKVPLGLGETTEFVDTAGVIYL
EADGHYSRVHTAFGHSFCPLALAELERRLDPDQFLRVHRSYIVALAHVRA
FRKRESGGLLVMDTGAGDLVPIGRAQVTRLRGLLAI
>Rru_A1802 chemotaxis sensory transducer
MGTFFSAVFNGASAQQKDDAEVLALLKTRAGVGLWDVKLHGSDPLHPLSV
WHWSSELRRLLGFTDAAEFPDVVKSWSERLHPDDVATALGAFTNCLSGRS
AVKDSYDVSYRLKRKDGAYHWFRAMGGVNRDGAGKATRMCGSLIDIDAER
VSEARRREDTQRFADSFEAQVMGLVQSVSGASGDLQTTARWLSSGAAEAA
DQAVTVAAAAGQATSNVETVASAAEELSASVSEISRQMADSARISTAASE
EAARTNAMVQGLATAANKIGEVVKLINDIASQTNLLALNATIEAARAGEA
GKGFAVVAGEVKNLANQTGRATDEIGLQIAAVQEETRKTVEAIKGIAATI
EQVRENASGIASAVEQQGAATREIARNVEQAATGTRQVSQNIDSISNNAT
EAVKGAGQVLTSADGLATSSQNLRDAVTRFLAEVRSTT
>Rru_A2406 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulation
MIPSTTDDARPDLPSDQAERHPEGGADFEAIFRALPGPHLILDADLKIAA
VNDAYLQATLTRRGEILGRGIFEVFPDNPNDPVSEGVRNLRASLLRVLSS
RTQDVMSIQKYDVRKPGGGAGDFELRYWSPINTPVLGADGAVVYIVHYAQ
DLTEYYASSGQQDFAEGGKDDIVRQMEAEIFQRSKEVAKSNLKLKEANSE
LAILYEKTRELDDIKTQFFANVSHELRTPLTLILGPVTSRQEDPTLAPAE
KRVLDMVARNARLLLRHVNDLLDIAKLEAGQMRMQYVRTDVTRLCRFALS
HFDSLAEERAIAFTLEAPAVLWAEIDPEKFRRVLLNLLSNAFKFTPNQGE
ITVSLIDRGDDVILRVSDNGPGIPESMWTAVFERFRQVDGGSDRRHGGTG
LGLAIVREFVDLHGGEVSIGQASEGGAAFTVVLPKKAPPDVAVYPEIGDT
LAEGPGFYRDIDKGLEGEDRLTDLAPSAAASGPASGPAGGVGINAPLVLV
VEDNPDMNAFVSEIVAGHYRVISAFDGQEGLEKAHETLPDLIISDVMMPR
MSGETMADTLRQDGLTSDIPIIMLTAKADEAMRARMLRGVVQDYLFKPFS
RLELLARADGLIADHRRKQMVLRESEARFRATFEQAAVGIAHLDPDGHWL
RVNHKLCDIVGYPPDELLTLSFQDITHPDDLRADLRQMEALLAGQIDTYT
IEKRYIRKTGESLWINLTVSLVRDIHNAPAYFISVVENIQSRKEAELQLL
LASAVFSNSMEGIFVTDLKGSILAVNPAFSQITLYEAAEVLGRNARILQS
GRQNREFYVALWQDVLTIGSWRGEIWNRRRDGEVFPEWLSISSVRNHQGE
VTNYIGIFSDLSRIKHSEAKFHHLAHHDPLTGLPNRLLLRSRLDHAIERA
RRTGGRCAVLFLDLDRFKMINDSLGHRAGDTLLRTLGARLTACLGDTGTL
ARLGGDEFVAVIEDIDGIPAVGTIALTMLERLREPCRLSEGPEVCIGGSV
GISLFPEDGDNPDTLLQHADTALGQVKGAGGGAYGFYTRTLTERISARLG
LEAGLRHALEQGDFLLHYQPLIALGTGEVEGVEALVRWAGGDGLLIPPDR
FIPLAEDTGLIVPLGEWVLGEACRTMQRWRSQGMPLTVLAVNLSPRQFRD
HAIPALVRRVLEQTGLPASVLELEITESAIMEQGAAAEAQMTGLKHLGVR
LAIDDFGTGYSSLANLRRFPIDKIKIDQSFVRDIPRDAAAEEITATIIAM
GRTLKLHVLAEGVETTDQLDFLSRKQCDSAQGYLFSRPITAAALEKWLAL
R
>Rru_A1898 SOS-response transcriptional repressor, LexA
MLTRKQYLLLSFIDQRLKLSGVSPSFDEMKDALGLKSKSGIHRLIKGLEE
RGFLKRLPHRARALEVLRLPCNLTFDGDGEALDDGQPAPLFGGPLPETGF
SPQVIRGNFTPTLPSTQVPQVLFTESISLPLLGKIAAGTPIAALIDPTSS
IDVPASMVRGGEHFALRIEGDSMIEAGILSGDLAVVRRCDEAENGTVIVA
LVDNEEATLKRLRRKGASIALEPANRAFKTQIYGPDRVRIQGRLVGLIRS
Y
>Rru_A1401 chemotaxis sensory transducer
MRISIKLKLGLTFAVIIALSMVTAGLGVTSLAGLEANLRGLVDGPVQRLQ
TAEKLLVDVLQVIRAQKNMILAVSPQEAAQHEKTILGLRPQITNILDQAV
SAATPEGKPKWEAFRVAWGEFALFDEKVRGFVRAGEPLKAQELSVSEGRQ
IVGDVEKQNMDLVDLNQTQMEQAQADATAQYESSRTFLLSTILVSLIIAV
GAGLWISLGISRGLGRAGSLAQEVAGGDLTKTIDNVPRDEVGDLIGHINA
MVKKLREVVGEANSAAENVSSGSQELSATAEELSQGATEQASSAEEASAS
MEQMAANIKQNADNASQTEKIARQSSLDAQASGEAVTRAVVAMQTIAEKI
TIVQEIARQTDLLALNAAVEAARAGEHGRGFAVVASEVRKLAERSQLAAA
EISTMSSQTVRAAQEAGDMLGRLVPDIRKTAELVSEISAACREQDIGGDQ
INQAIQQLDKVTQQNASASEEMSATSEELAAQSEQLQASISYFRVDEGNG
GTRAMPSRRLSRPVGTALVKKPVARGGRVALGNPAAGRNGAKRNGADTGF
TLDLAQGGSDAQDVEFEKY
>Rru_A1400 CheW protein
MSLWNGGRSLEVLTLGLAGEIFAIEASHVREILDLVPITEVPNSAAFVSG
LINVRGKVVPLADLRLKFGMEQKPPTIDTRIVVIEVLVDGDPLIVGIRAD
KVYEITQVAAGALEETPRIGMRWRSDYITCIGKRDADFIVVLDIGRIFSQ
GESRDEAIFAGSSTAPRSLS
>Rru_A2333 chemotaxis sensory transducer
MTKTPGGSSGSTASRRREHPPLNGDPVTRTHSRIDPVKRRRRGQPGRRFP
LAALVGPALVIVAVLLGEGLVFLLPSLNGPPPLLLRLMVALSVATVLFVA
ASRKRRPAAPASPAAPSGPDHPPATVEAPPAAFDALNYGRCLSDTMAGFA
DFSERMKKETTAIIHDTDRNAVDLMTHLREVENGLEALLEFITATGSNER
VVQIIDRTESQLVRSQTLIADFSRDREEDTIKVKAGMGDIGQVVSELSKT
VQTIRGIARQTRMLALNATIEAVRAGEAGRGFAIVAAEVKDLSLRSDQAA
IAIGEGISRLETAVQTSLDTIVGERIAKEESGFAVMSEAVTELTENLQTL
ISQQHDTLTKVRYENERLATPILQMIGSIQFQDVVKRRMEALVTCFGHIS
DAIASSATEISDPSISSLDEMNRRSRRQMDEMVSFAIDQLENSHDEHTAK
SAKTPSLIELF
>Rru_A3563 chemotaxis sensory transducer
MMSVINNIKIPMKLAGAFFTLIFIFLFSGVISLYLMNDMDDATADITDNW
HLTITSLDNIEKTLIEYRRWEQTLAAARTPDQSDRADKMLTKTRVVLSEI
SKNHLKYLASKREADIYNEFVSYLQPFFQESDKAREFAKKGDASQVNTVL
LGESYVIIGKMQTVLDSLVQLNAEGMKAANQRQDDSYETAKIVTYFVLTF
ATIIAVLAGLILRSAIAKPVSAMTEAMKRLAEGDKSIDIPARGRRDEIGA
MAEAVQVFKENAIRADRLAEDQRKEQAARTARAQTIETLTTNFDGKISNL
LTLVEGALTELNATAQTMQSNSERASQQATTVAAASEQASTNVQTVASAA
EELSNAIVEIGRQVERSSATSKAASEEAERTNKIVLSLADSSLKIGDVIG
LINDIASQTNLLALNATIEAARAGDAGKGFAVVAGEVKSLANQTAKATEG
ITAQIGSVQSATQEAVTAINGISTRIGEINEISTGIAAAVEEQSAATGEI
ARNAQQAAQGTQEISANNAGMTQTSRETGAASGRVLSAAQALEKETASLK
DVVASFLDGVRSA
>Rru_A1680 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family
MAHDILIVDDEEDIRMMLAGILEDEGYDTRVAVDADSCFKAIDERTPAVV
ILDIWMQGSRLDGLQVLEELARDHPYLPVVMISGHGTIETAVSAIKQGAF
DFIEKPFKADRLLLIIQRAIETAQLKLENAELRMRAGPETQMIGDSALIG
HVAQTIAKVAPTGSRVLISGPPGTGKEVVARMIHAHSPRAQNRLVVVNCA
AMHPDRMEIELLGAEPGSGDGADSYRKIGLFEQADGGTLLLDEVADMPLE
TQGKIVRILQDQSFERVGGGRRIRVDVRVIASTNRDLAQEIALGRFREDL
YYRLNVVPIRLPALRERREDITPLALHFMDRAASSAGLPPRPFGEDALAA
LQSYDWPGNVRQLRNVVDWLLIMAPGEAREAIRADMLPAEIGSVTPDSLR
LDRSGEIMTLPLREAREMFERDYLIAQVTRFGGNVSKTAEFVGMERSALH
RKLKSLGVGGSDRQKV
>Rru_A3026 HPr kinase
MTRKTGTPLSGRLSRRARPAPMSTLPTPPAPGRDEDRLFYGYRLRTEVPL
PSLPILAENGAPDLTLRRGWVPDRLPDAVWASPFVEIAADGAVLIRIPGI
LAFLIRDGRHVTLDQDSDAATGVIETFLFSVGAGAVLHQRGVLPLHASCV
MIGDVAVAMAGVSGRGKSTLAGLLSMRGHEVVTDDVCPVVFHETKALVVP
GPPRLRLWPDAADLLGLSPGDLQTGRPDHPKRVLAARGAEGTPKPLGAVV
RIGIDNRLEAPVLSRLTGHAAITPIEDLVYRARLGRRLDRRVGLFQDLVR
LAALVPLYQMSRPDGPVDPSLLADLIASTVVAKGRDAADD
>Rru_A0609 UspA
MYKRILVPVDLRGTFDWDHTLPHAIALAQFCSAKLHVITVVADFGSSIVG
EYFPGGVEKGVAGRLLEALKARTASAVPQDVAVQNMVSEGRIYESIVRVS
RQIAADLIVIGAHRPELKDFLLGPNAARVVRRASCSVLVVRE
>Rru_A3465 chemotaxis sensory transducer
MLTVVLGGAVASLAVASNDWLDLGLAGGLVLAGGMALILLRSLKAQIAKA
SDVAAAARGDLGARIMGIGGTGEIPRMHYNINHLLDVTEAFARESGAALS
FASRGEYYRKILRRGMVGDFGRYGDTVNAGLEAMDRKTRGFHESASEMGD
KIMHVVHSVASAAAQLQASASSLGDMARSTDDQSVRVADAARDASANVSG
VAAATEEFSASITDVAHQVERTSQVAHNAVVTAGKAESTINTLAQASARI
GEVVGLINDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKTLAQQTA
RATDEIVGQIEGMRTATHEAVLAIQGIGETIREISEAAQAIHHAISEQRA
VVGEIAGNVHRAVDGVRIVAEGIATVAGSVREATGAVEEITGAANDLSCN
SEGLSGDVARFITQVSASR
>Rru_A1679 Multi-sensor Signal Transduction Histidine Kinase
MSPTSQRRGGRPALNRTILRLGLWARRVKLSRRLAVALAVASLISGGVTF
FLLSSPEPSSRAIWILLNVDLVILLALGGLITRSVVRMWSSRRSGGAGSR
LQVRLAVLFSAVAITPAILLAIFSTIAFQVSFQSWFDEKVSTAVRESQEV
AEAYLQAHMNAIAGDAALTANDLNREWRRMPNSQVLNQFLTTQSLVRNLS
EVVVFTREGNVLGRAGYTFSLQFEQVPNYLIDQADLGEVVVIPGQGNDRV
RALVELGTPGTYLYVGRFVDAAVRDHIEKAHAAVSEYLAFQAQSSKLQIL
YFLTYIVVSLLLLLAAIWVGITIANRLAQPIMDLIEAAGKVSEGNLSVRV
SELVASDEVALLGRAFNRMTIRLESQQKSLLAANLELDERRRFTETVLAG
VSAGVIGVDAEGKINLPNPSACALFDRDLTLWQGQPIGALLAEFGEVLTA
VRQRPDRPVEREMEIRIDRRPVTLLVRVAAECSAQGITGFVFTFDDITEL
QSAQRKAAWADVARRIAHEIKNPLTPIQLSAERLKRKYLKQITDDPETFA
RCTETIIRHVGDIGQMVDEFSAFARMPAPEIRPCDLGELVLQSVVLQRTA
YGQIGFSTELPEGKVIVAADGRQITQALTNLLKNAVEAIQGRDRPAEGAP
PLPAGRIAVSLTLTNDQAVVRIVDNGRGLPDMETKRLTEPYVTTRAKGTG
LGLAIVKKILEDHGGDLVLENASGGGAAISLTLPLTPVVRAADPGFASQP
PLQADPIHGA
>Rru_A1678 Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family
MSTILVADDDRGIRTVLSQALTRAGHEVRSTGTASTLWSWVTDGQGDLVI
TDVIMPDENGLDLIPRIKKIRPDLRIVVMSAQNTLLTAVKATERGAFEYL
PKPFDLTEVVNVVRRALSLPRGNPTEGDHASEEDERLPLIGRSPAMQEIY
RTLARLMNTDLTVMINGESGTGKELVARALHDYGKRRNGSFVAVNMGAIP
RELIESELFGHEKGAFTGAHARSAGRFEQADGGTLFLDEIGDMPLEAQTR
LLRVLQESEYTTVGGRQTLRANVRIIAATHRDLRQLIHQGLFREDLFYRL
NVVPLRLPPLRERVEDIPELTRHFLHAVAEHDGLPPKVLEAPAMERLKKH
RWSGNVRELENLVRRLAALYSQEVIGVEVIEAELSSSAPPILDEGDESAE
GLSTKVERHLRHYFEAHGEALPPAGLHERISREVERPLISLCLEATRGNQ
IKAAQLLGLNRNTLRKKIRDLDIQVVRGVKG
>Rru_A0131 Response regulator receiver (CheY) and unknown domain protein
MSDDELLFAEEDPSDNVGEGIGRAPWVILVVDDDTEVHALSRLLLSEIEF
KGRRVAMYSAYSAAEARAMLGRIDDVAVILLDVVMETDDAGLKLVRTIRE
TMNNRDVRIILRTGQPGQAPEREVIETYDINDYKSKTELTAQKLHTALVA
ALRAYDDIMALVLSRQGLRKILDAAASLYRQRSMELFAAGVLTQINALLG
GDRDGILCVQSRKEQADEDDPAGAMVVLAASGAYERLVGKRVDELPESPV
ISLIREAAASRTSRHGSHASALYMPTGDGRETVVFLHAAEPLKAQDRALM
QLFCDNISAGFDTVCEIDDLRRENVRLRARLGEAKAP
>Rru_A2661 Putative diguanylate cyclase (GGDEF domain)
MGAEGASLDDADTPSMAAQAAARLSVLGLLIVGLVSLVGYFFVFDWDKTQ
ALERLSDFLVQRRALENTLFDEAQRNGERFHALFLDDYHGAPPLDEAEFG
RYFQQDGTDGPWRTRPEFYHGLRDREGGLIAGVSGFIAAGRGAVAPDHAR
RLVVSMRLLGRLGPAWSGAFANSTISTPENGSLLYWPGVPWGLEAAADLR
PAEGSVIASTLVEHNPQRRPVWTALYHDLTADAWTVTYQRPIDEDGRHLV
TFGHDLLLNAMLNRLASDHPPGASSFLLGADGSLIAHAGSEERMAHIGTQ
IDLETLGDPALLRRYRLLVAAVGQRGGDGVWMVEDREDHAWLAATELSGP
GWWYVISYPKEVIADRARRAANQVVIGGVVLSFLLVAMVQLVMRRRVARP
LAQLARAAGAVGTGQTALVASGGLDLPIGERNEIGVLARAFREMAMRVRD
HEVILEREIANRTGALEEANRRLHSLSETDGLTGLFNRRALDRDLAGHCA
LARGGGGAVALIMVDIDYFKAYNDAEGHLAGDDALRKVAQRLLSILRPGD
TIYRYGGEEMAVLIGGAGADGAVGVARRIVDEVAALAIPHPASPFGVITL
SAGLAVLRGEATLPKTLISRADEQLYAAKRGGRNVLVVAPTDPA
>Rru_A0853 hypothetical protein
MPRFVPYKRPALCKFLAFARVGVYDRRRFHPRSSMAYPDRMPLLTDQGQT
QGNRLHPYLVSGVRFALGHPLPLVAADPGGPALAQVAVTVAPLAPPPVAE
AAVSIGMGMWVGPNRVLFSFGAHGRALVDRVSGVTLDFDPALDPHLLAQY
FCGTLISAVLHLCRLPPLHASCLVHPATGGAIALVARRGDGKSTLAAMLR
ERGWRPLADDVTAVAPAANGVPQAWPGPPRFRLSPDSMAAVGLTDGTAVG
FPGAAKNLVEKGGAPWQVGPAPLVAVIELADGTEERPLVRPCAPHVAATV
LGAHTFRRRLIAPLGLVADHAARCLGLLSHVSVFRLVRRRDLGQLGGLAD
AVEELADRLGR
>Rru_A2076 chemotaxis sensory transducer
MTSLNNLSVGRKLILVFSLLFLMVACLGGFSIKALSDMNGAATDVSQTRL
PAIDKARSLQFLISRLRTNQMAYMVAQGSGLETTRKTVEQTEKVLAATRA
EYEKLMSSAEEREAYKTFADNYAGFAAGLVRIADLSKAGRIDEARELTWG
ETRPFYLALVKSTDRLTELSQIQAAVAAANIDHTNRIARIGIIAALIAVL
IVAAVAGALLRQTIAAPLLALRATMERLARDDTAVDIPGHNRKDEVGAMA
RAVLVFKDSMIESQGLRARENAERASQEQRAATLSLLTQDFDTKASSVIN
DVAEAAGTMQTTASQLTQATESTAEQSTAVAAAAQEASTNVQTVAAAAEE
LTSSIGEISRQIAQASHVSQKAVDQAAHTTGIVGGLEQAAKRIGEVVAMI
NDIASQTNLLALNATIEAARAGDAGKGFAVVAGEVKSLANQTARATDDIT
QQIGSVQTATGAAVQAINEIATTIGEINEISANIAAAMEQQGAATQEIAR
NVEQAATGTDQVTRNIHGVNQTVDNTGQSAKDVLNAATRLRDESAAMQTL
VTTFLDKVRAL
>Rru_A2158 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family
MRLGDFSRYLPGGRRGLFPIYCGVIEGRPRNGGLVRPHKAEEFPSRMTDE
TLPFILLVEDTPVQARTYLDYLDGGPWTIEHVETGAEALAVLERRPPSLM
LLDIHLPDMDGMEILRRVRSLPLSMGVVMITSNASISLAVAAMQAGANDF
LVKPFSRDRLMVTLRNVIDNQRLSREVETLRENLGIAAFQGFVGSSAAMQ
RVYRLIEASAASTATVFITGESGSGKELAAEALHRYGPRVKGPFVALNCG
AIPRELMESEVFGHVRGSFTGAVSDRDGAAAQANGGTLFLDEICEMDPNL
QTKLLRFLQTGMVQKVGGDRPEKVDVRIVCATNRDPLEEVKAGRFREDLY
YRLHVIPIRLPALRDREGDVLEIADHFLASIATEEKKSFRGFSPAVAQAL
LAYDWPGNVRQLINVLRNVVVLNNGPEVTLGMLPQAIADADGEAIAGEAA
EGESPALFRQQDIEPLWVVEKRAVERAIGACGGNIPRAAALLRVSPSTLY
RKKQAWEEGRH
>Rru_A0719 conserved hypothetical protein
MICKGARRLLGWGGVAALLGLGCLPALAAADPPAPTHRLVVSSTYWPPYA
GSGLPDGGTVVAPIAAALREIGVILEVIYVPWPRAVSLFAEGDVDGFLPT
YDRHGQSCQLSEPVLDTVLGFVERVDAPVRWASLSDLAGLRIGSVLGYSN
SPEFDRLVASGVLTTEVVTNDLRNVLKVAAGRLALAIIDRDVFDHLMAHD
PEARAVAHQVRFSRRVLAIRPIFLCLRASESMAEVLARINRALRFQTLGD
P
>Rru_A3335 Periplasmic Sensor Signal Transduction Histidine Kinase
MSGPTTSSVSSARPIADRSPSSLGFAIRLLALCAVLVALAQAPVLVAATA
GRLGGTPLAPPPSWAEIGRTALALTASGDAGEAARADLLDTARGILPLSL
PLAAGTGVLVFLVLLRQGRAPARRVLAFSAESPQSSPGAEGAVLDRALAR
IGHDLQAGLAGAVAAGETPPPAVVRAVEDALLLVASARRFAGAPAPSPRL
ARVRVADLLGRVVDHLAAAHPGVTWRLDTPESLVLKGDEAHLFRILVSLG
RNAAQVGSRSVALRAERGEGWVFLDVIDDGPGVDPLTRDSLFQAFAGPSR
PGAAGVGLAVARDLARAQGGDLALVDGTIEGATFRLSLPAAGKPSS
>Rru_A1735 conserved hypothetical protein
MAVPERPRRTFAIERTMQRQAMNQALGLPITEGAVDDPSTQAALPSPLIA
ELLKEVKALRQEIKGMKGVERNPVAAFGDADEAHLLRIEIARMIRSLAAA
KREIAEIKHPLADEDRVQRATSELDAIVGATERATHLILDAAETINEHAE
RMLKVLGEEDELAPQFHAISNEVFVIIEACNFQDITGQRITRVVKTLEFI
EERVKKIIADWGAEAFADLPLPKLDTIHSSDDLVDGPQLENEALSQDDID
SLFG
>Rru_A0085 Putative diguanylate cyclase (GGDEF domain)
MDLLTGSDADIEIEEAPPGKILIVEDSPFFMHVLRRRIGQELGVPIIEAE
TLAQAALIIEEEGSNLFLCLIDLVLPDAPNGEIVDYVTGKGLAAVVFTGA
FSEEMREHVLSSAIIDYVTKDSLASLDYLVAIVRRLCRNAHQKAIVVDDS
RTARAYIGDLLRLYRFNVIEAVDGEEALALLAANPDIRLMVTDYYMPRID
GFELIKRVRQTHSRSALAIIGVSTGGSAPLSARFIKYGANDFINKPFLRE
EFFCRIAQNMDTLDYIAALARSAQIDPLTGLPNRRYLFDVASRALAATLR
VGGHPVVAMIDADHFKEINDRFGHDVGDQVLEALARVMDDHVQRKSDVLA
RFGGEEFCVFVSDMSPEQAFTFFDGLRAAVAQSPLSVPGLDDLSLTISIG
VSTCAAPDLRTMIHSADRLLYDAKAAGRDCTVVEGLGERTQSCRQSSGKD
EDA
>Rru_A1053 chemotaxis sensory transducer
MPLALGEDPILSPPSNVAFRSNGFGGLWGLLPRALGGGESFREALDQLPV
PVILARPDMVISWMNRATRRSLERIAHLLPVAPEDVVGQSIDVFHRHPAH
QRALMAKPGALPHHAVIALGDEFLDLQIEALGERAAPKAYVLTWSIVTER
VKAERLVSQRNHMLDQLPVNVMLADPKTMLITYANRTSLDTLAKLQHLMS
FSVSDLVGRSIDIFHKNPSHQHAILSDPKRLPFHSKIRLGPETLDLRVTA
IFGERGEYEAMLLCWSVSTHLVKLADDFESHIKGFADMIGSASTQLHSTA
ESMSGAAEEASSQAAGVSAAAEELSASVQELGCRLKASQTLLEQARAAAQ
TSTSEVIQLRDAAQQIDSVIDVIGEIAGQTNLLALNATIEAARAGEHGRG
FAVVAGEVKDLSAQTAKATGSITGEIRNIQTSTDATVGTIDTIVTLVEEI
TGVFSAMQDSIAIQSEATREVARNITGVSEASSITSSAACDTMGAASELS
RTAEALRGQVDNFLATVRKL
>Rru_A2612 UspA
MTGIRTILSVVGDEATGEAPLRTALVLARDLGCHVEGFHVRIDASAAVPY
VGEAMAGALVEEMVEAAEKEARERAAKAHGLFTRVCAELAIVLDDTPPGP
GGPSASWQEARGAEPEHVAMRGRVADLLVLGQPGLHGEPPSLLTLNAALL
ESGRPVLVAPPQAPAEIGRRIAIAWNGSAEAARAVMGAMPFLVAAQEVTV
LIAEIDEEGADATAHELERHLAWHGVKAGVRVLHAAAGTRAGEALVAACD
EVKADLLVMGAYTHSRLRQLILGGVTRHLLGNARIPLLLSH
>Rru_A3104 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family
MTEPLPRLLIVEDDLGVQSQLKWSFSDEWLIDVAADRAKALEIAARTPPT
IVILDLGLPPEPNGAGEGLATLEGLISLNPLTKVIVSSGNEDHRHALSAI
RLGAYDFYPKPVDIEHLRLITARAAHLRRLEEENRQLARAGHAGPLANVI
GESAAIQAVCQMVRRVASTTVNVLLLGESGTGKEVFAHSLHQLSGRAGQP
FVAINCAAIPENLLESELFGHEKGAFTGALRQTTGKIQQANGGTLFLDEI
GDMPPPLQAKLLRFLQSRVIERVGGRQSLEVDVRIVSATNRDLGALIEKG
EFREDLYYRLDEVKIALPPLRDRIEDAPLLAQYFLDSFAASMGRKVTGFS
SDAQVALSAHPWPGNVRELENRVKRAVVLAEGRLVTAKDMDLVGGAMPTL
RESRRRADYQAVTTALLLAGNNLSLAAKYLGISRPTLYDLIETHNIHV
>Rru_A2602 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
MSIRLKTALLSGILLAILVSGLGGVLWTVVRPGFQDIERARAADHMTALL
AAISADIDSIGTFILSYSSWDETYAFVRTGDPTYVANNLAVEGAKNAQSH
FALVLTPKGRTVFSRLWNDDFTATLPPPDAAGGGLPANHPLMAALSHPEG
VRGLLQTPRGPLAVAARPILPSNEHGPPRGVLVFGRWLTHALSDHPPLPH
LSPLRLWLAPAPGDAPENVRRLLAADGPDLEIDGIGEPTSLVTAGIRLVD
LEGAPVAALTTTLAKTVEPQGESIIRLALVIAALGSLGVVAVGLVSNHLM
IVAPLRRLESHITTLSRTGDLDTRLVLDRKDEIGLLARAFATMQGRIRHL
AHYDPLTGLPNRTLFTMLGEGALARRRADRNGGGRRVGVAILDLDRLNTL
TIGLGQGGSERALVAVGRRLAALAGPADVVARGGDGRFLVLLGDLAPAQA
GSIVEREAAERLASAFAKPFTPDDLVGAPLSLTASIGLALFPQDGETLET
LVTHAEVAVHQAKLLGRNNFQFFDDTLNRQAREILALESALYEALADNTL
SLCFQPRIDAVRGHAIELKALARWDHPSRDLIVLEDVLPLIKQDGLLAEI
DRWMSNAACRQIRQWRDQGVSFPPIAIALSARPLTAGDPGLAPIAEAIAA
NGVDPGDLAVEIAQSAIKGQFPETKAPETQAPEDRPAEELPWPDGLAGLG
LGLVIDVADAGVVSPALLRRFPLTRLTIGAALVAKLPDCRESRALVRALI
ALADELDLECLAEGVERGDQADWLLAAGCRLQQGLFHARPQDQTVILRWL
GQTPPRGLSSPGPRDRKQDGV
>Rru_A0326 Transcriptional Regulator, NifA subfamily, Fis Family
MGEAHSLAERYELLLDVSEILELNRDLNSLLGALCDLPASIGLFDYVNLL
LYDAPTDTMTLFSQGDVGGGYARIDGLAPTEGPGQVVWARQRPFVCSGEE
YRRHFLKIAALRRNQRVGLYCQMPLTTSQRRLGGVEFISSRPTTYDEDDL
TFLRRVASVIAISVENALIGEMRQMEEERLRGERDHNHILVEVTNAVISK
LKLEDLVDEVSRSIHRFFGVDFVSLDLVDPATATIKSRSVYFQKGLGPVW
GSAQGPLGASPMAPLFETKAPRILARADLGALARGHDQMTLLTNAGFQVA
CGIPLLSAGHVLGVLTLASRERDKFTDYNIGLLGEVASRICIAVENALAY
GEISRLKDQLSRENKQLAKERYYLEEEIRRTEDFGDIIGISPAIRGVLEQ
VELVADSDSTVLILGETGTGKELIARAIHMLSQRKKRTMIKVNCAAIPSA
LLESDLFGHEKGAFTGAIAQKSGRFELADRGTLFLDEVGDIPIDLQPKLL
RALQEREIERVGGHQPIPVDVRMIAATNRDLTGMVEKRLFRGDLYYRLNV
FPILIPPLRERREDIPLMADYFMRKTARKMNRAIEAFSAETMDMLLNLPW
PGNVRELQNVIERAVILTKGPVLHLPATELRHHLAPSAALPSEDAVIPLR
AAVLPSAASAPDPLPPPAGSSPNPGDLAGEAIERDQILRVLRETNGIVGG
PRGAAAHLGMKRTTLLSRMRRLGISPKEVDHRA
>Rru_A2101 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family
MHRILMVEDSPSNAELYATYLRASGMTVTLAGTGGQALDYLVADASAFDL
VVLDLGLPDMDGLEILRKLGGPAAMPPTVVLTGSGSVRRAVEAMREGAID
FLVKPCGADKLRTAVEEALERRTPTAEGRAPAADPTRAKRGPSGFLGSSP
AMSNVFSLIEAAAASSTASVFITGETGTGKELCANAIHNLSDRRNGPFVA
INCGAIPRELMESEIFGHRKGAFTGAINDREGAASRADGGTLFLDELCEM
DLDLQVKLLRFIQTGTYRKVGDGADRQVNIRFVCATNRDPLVEVKAGRFR
EDLYYRLYVVPIHLPPLSARGDDIILLARRFLADFSKLEGKRFQEFSADA
LGRIMAYRWPGNVRQLENVVRNIVVLNDGVTVEPTMLPPPLDCVEAVVSL
PVDPQSATGAVVGGGTLSLDEILARPLAELEAMAIDAALRLSDNNVTRAA
RLLDVSPSTIYRKHSAYKSGGTGGSAGR
>Rru_A2142 chemotaxis sensory transducer
MTTELAFIRLSVLRLFMVFLLLQAAAVPVAGWISGAEILPGLLVAVPIAL
APIALVLLTGDTPASRSIMGVGLMIQVGVLIFMFRGHPWQSDIHLYFFAG
LATLVALCDATVILAAALTIIAHNLILTYAMPAWIFPQGADLGRVTLHAM
VVVVEGATLVWVARRLARAFAATEQAVVEANTAREDTRKAAEERLRLEAA
AAEAQVSAVRGVADDLEGSVGAALGALKNGTAAMHQAAEALDDSSENSRQ
VSSMARDLSGRTAEGVESMAQAARTMTQSVSGILESVRHSDTLSRSALTD
AERATEKVAALSTAAERIGEVVGLISAVAAQTNLLALNATIEAARAGDAG
KGFAVVANEVKTLATQTARATDEIAAQVTGIQGATRDSAAVIATISRSMT
DISTTVSAIAAAMEDQGQASRLVAGTIDAVSTLAHELGEVISRMDSLTGD
FSANAATMRGLSDHAVDEIDRLDESVVAFVGRLRA
>Rru_A0626 Transcriptional Regulator, Fis family
MKQLRDPEIVLEGLDPETAVTLVTTATDVTLVIDQEGVIRDIALGGDGSL
PVRRKDWLGRPWAETVSAESRPKVEAMLRKPDAVDPTKWRQVMHLTETGV
EFPVLYATVRPGGHGQIVALGRDMRSVATLQQRLINAQHSLERHYARLRH
METRYRLLFKLTTEAVLFIDGASRRVVEANPAALSLFGETARHIVGRAFP
FGFSQPSTQEIETLLAGVRTIGTGDPVVATLAESSRAVLVSAALFRQERA
TQFLVRLTPQAGDRETNGVPPAKFMVLDAVEAMPDGFVVTDLDGRILTAN
ASFLDLAQLATQEQARGQFLGRFLGRAGMEFNSLLVNLRDMDLVTLMNTT
LQGEYGSVADVEISAVSAPLAEQPCLGFVIRDVSQRHDPDQKGGGDFTRS
VDHLADLVGRVPLKDIIRDTNDIIERLCIQAALELTGDNRASAAEMLGLS
RQSLYVKLRRHGIGDLDGDREE
>Rru_A3532 UspA
MDADDLPDDSAPLASPPSVAEGVHDGVDETHPHGRTFLVVVDDSEEMNAA
LAYACLRARVTGGRVALLRVIEPAEFQHFAFIDSIMEHEARERAEQLLQR
MAAEVNRRSGQLPMLYVREGKAVDELLSLIDEEPGLSILVLAAGKGKDGP
GPLVTACGSGLMARLRVPVTIVPAGLTPEDIERLA
>Rru_A2368 transcriptional regulator with PAS/PAC domain
MIDPILAAGLRDRVLARLAHRLPFGLVVTQAGGAILYANPRFAHQIGQAA
ESLIGRSLAALCPDLPTPTPGLESGRMAALPGADGRMFGVIARVVPASQP
PERPSWIWTFEDGVDLPDLERALDHLLSHSPTTGLPAQARFVKEAGDLAG
AEGYGLAVIGFTGFTRLQSTVAGALEAPFYRQLAATLAKEAPHRLIGQIT
ADTFALFCPAGHDAAVVAHRVVGHLCHGVLLGEVTLPLDCLGIGRDGAAG
TDPALVLEDALAALKAAEAAFPQRGSSRSRAPFSASVST
>Rru_A2567 Putative diguanylate cyclase (GGDEF domain)
MIDTTTMMLVLGLGNLLFGLTMAAYRQPAADHRVMRLWIAAQVLKGIGTL
LVTLRGEVGLSLSIFGGNSLIFIGYGLEVAAYRAYAKRPNADALLPLLIV
GYLVLFNGAAGITPPDAPRNHLFFLSSAMLASLGFLNCWFLLRAKRPPSP
VKTLLISSNALLGLAAVGRAVGSLLAGPLSPFANSPTHLVVYGLAYAFMI
TNGFGFLLLVKEDTDAALRRLADTDQMTGLANRRHFLTASQEAWKLAGRL
GRPTALMMFDVDHFKQVNDSQGHAAGDAALVDLARNVREVLRDIDIFGRM
GGEEFAITLPGCDLVAAAVIAERVRRAVAESRGEGPAITISLGLTILVAG
EPFDTALKRADHGLYQAKAAGRNRVCCVPAPQGLASVEAEAPISLAG
>Rru_A3230 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
MTVQASCVADLSSLGRDVALDPVISLRSGRVIGYQAVAGPPPGGREEDDL
LLREAIEAAVWSSAIALFAAVSAGRDQRLFLGLDFGLVVRWPDMAARLAM
LLDAHGVDRRVITLSLSERRSILDLGGGSGERALDRVAGAVVQMRGAVGS
IALDGFGGGHAGLALLAAVKPDYVVLDPYFVSTQAIDQTRRLFLGHLVDV
AHLLGAQVIAPQVEHLADYHACRDAGCDLVRGPVLAKPDRDPRRLPEVYP
QVAALNATSQRRGRGDQHLVAAQMDEIDPLMISTKMADVFERFRRQKDRT
FFPVVDERGEPLGIVREVDLKEYTYSLYGKDLIGNKALGRTLSAFLTRCP
RVDIDTRAEKILEAFSTTPSSDGLIITQDGRYRGFLTAASLLRVINDKNL
EVARDQNPLTRLPGNTVINTELGEILADDRQGASLVYLDFDHFKPFNDKY
GFRQGDRAILLFADLLRSQLAEAGFFIGHVGGDDFFAALREGVPAAVTAR
IRALIDKFAADVTAFYDDETRQAGCVLARDRDGIERRLPLLSVSAALVHL
APGHAIGDLDRIGGVIARLKKAAKQSPCHLAETVAGPDILVEEL
>Rru_A0130 chemotaxis sensory transducer
MFDFFQSKRPQDAAAAHSLEQKFARLKADSADLAELHAVLDGNAGVGLWD
AVIHEGDPLHAQSRWTWSAEFRRLVGFKSETEFPNVVGSWADRLHPEDAA
STFEAFGALLSDTTGRTGYDVTYRLKMRDGAYRWFRATGGCLRDAAGKPL
RACGSLTDVHEQADMAERMRILSHHAGVGLWDAVLHNGDAMHPQSRWTWS
PEFRHLLGFESEAEFPDVVRSWSDRLHPDDVGPTFAAFGALLTDRSGRTG
YDVTYRCKVRNGSYRWFRATGGCLRDRAGNPLRACGSLINVDAVMRAEET
QRRLENDKVEILSRVGQALAGIESDIDSVIDAAQAASGQAGQTREAAATG
QDQILHLATTLEQMASATDQIRGLVNSIQQIAQQTNLLALNAAIEAARAG
EHGAGFNVVASEVRTLSTRTHSTSNEITGRIDASGTVMSSASAQGQGVVA
AFEDIGRMIDTSVQAVGVIQEKVRSQRARLGDIHALLASLS
>Rru_A1035 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
MLRIPSRSDSRFVLFLCSTALLVTAFAFFATYGGLKELRARDVWRAEAHS
KDLTKAIRQSTTNYLEKVEISLNTIAYVIEKDNHIGKREKEQIENLLSNQ
FLIFRDNENISITNEKGEIIFHEGLNTPLNFSVSDRDYFISLKNGTKTGL
VASPVLISRLSKKPVIIFSRSYTKADGTFGGIVAMPVPTDRFQHLVSGYT
LGGRDRLSLFSEDRSLIVSTEPTTIGAKAPANPAPPHPFDDRPDHPIQDG
TQRHIDPSDNTTNIITIAQIPSADMHVLCEISEDDYLSEWYETRNISLLF
VAFFLSLFYLSLFILYFFWRRQKEDATRLRESNEQTQTVLRTLRESDNAL
AAACEVGGLSTFILDLSANLWMRSPEQEAIFGLDGRHPRTRDAWHALIYP
EDRGGVLDYFAERDALDTGEFDIQYRIIRPSDGAVRWIHGAGKLERAEDL
SVRRLVGAIKDVTEIKEDLDRTEFLAYHDSLTNLPNRLLLADRMGQALAL
AVRRQDLLAVCYLDLDSFKPINDTWGHSVGDALLIEVARRLQQNARAEDT
VARLGGDEFVVLLCGFKAEAEVERVVRRMMDSIATPYSVGGRQVTLTVSM
GITTFPRDAEQEADALIRHADQAMYEAKRQGRNRIHYFDAEKDRLHKERQ
TYYNRMVAALEANEFQLHYQPTIDLVSGVFSGVEALIRWRHPERGLLLPG
AFLPDIEDTDLTVPLGEWILREALRQKERWQDMGLSLTVGVNLFGYHLQQ
DSFVARFAAILAEFPAVHPEEVTLEIVETTAMRDLAAISEKMWDCKRFGV
DFALDDFGTGYSSLTYFRRLPVTHLKIDRSFVTDILENAQDQAMVQSIVA
MSHALGRKVVAEGAETLAHCAALGRYGCDFAQGFGIARPMPGEDIFPWAR
QWNRPDSLRVSLGEAFA
>Rru_A0919 Two Component Transcriptional Regulator, AraC family
MYGIVIVEDEELERQALRTILTENIDGIRILGEARTGTEAVALIDSCEID
LMLVDINIPNLNGLEVIRHLRDRHADTKVIITTAYDYFETTRTAIQLKVD
EYLLKPIRTQALVTTIQSCIGQLGAGRQCRELVGRIADLVEQDGYQEGVT
LVRRHIEWICTQRGHVPRDLILDFAGALVALARDKGLRLPDALTQQIGQL
RTMPLDAQTGYQALGTFLGVVDLLFDVTGERFGYSSNTVKKVLNYIERNL
TKRITLEDAAEYANISPSYLSRMFKKTLNVNFISYLTTRRIELAKETLIG
TERPITAISQELSYSDVNYFCKSFKKEVGVSPTEYRRQSRLAQGAPPPRE
AALATG
>Rru_A2836 conserved hypothetical protein
MPIDTTLRGALDRALAHLRSQDGADDLAALLESLRDGLSAEGMAPAGAPP
LSPVPVMAPAGVGPAVDGPVPRPGAHPDDRVALIEEIRALSTFIETARND
LAVLRPRDIQERFIPTASDELDAIVQSTETATQDIMDAVEGLEALEGRLE
GEDARALALATTRIYEACTFQDITGQRITKVVRTLKSIEERVDALLSTFA
PDGLLGDGAPGSADDPARFRQTAAAVGDRPEDMALLNGPGSPGAVMNQDD
IDALLKDFD
>Rru_A3391 Putative diguanylate cyclase (GGDEF domain)
MSPPRLEDPITKSEAGVSPMLSPHEARDRHRHDVITRSLLVGALLCAIFA
PFDFFLTGYWVDATVEALGAATLLALGVFLRRGGDRLVAALIGHIIGGAV
ILTVVLGGKAQDAVFSWAVLFPVLPFFVLGQRLGLLVSIVFATTATVGVT
ILAVLDGAQGFSWIAPFNLAGALAGCTVLAYFYEGTRAKAARQLETLAKS
DPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHFKSINDRYGHE
AGDGVLCHVAHVIKGMIRANDLIARIGGEEFALLLPDTDLAGAREVAEKI
RKAIESTALIGPGGSLSVTVSIGVAELDPQYPDFAALFSSADHRLYQAKK
AGRNRVSAAT
>Rru_A2187 Serine/Threonine protein kinase
MMKKADAKGGNGDIYYLGDGKTVKKVLRNTSTEDRRPRFIKEIDVLRKLE
GEGFSNIVKVIDYDIINDNNPWYTMKRYRGDSNIIIDLTRGNACKAAKLL
LPVAETLMRLSERDPPIFHRDLKPENLLVGGSDDDPRLLIADFGCAYFAS
EDDRLTPEFRAVGAANYRAPEYHHGRVEEVTEKGDIFSLGKILWFFINGI
KDDIFPYTLWFPDLYNLSARFQGVAGIAKANLLIAAATHHDAAHRLLYID
FIAQLRSLAEMDIAEENDDDLNVRALMFDEQMRLNTERREKIVTDLLLLF
MSDLSRAIGSLPQFSETTRMREVRGFEINNIVKGVVRQSSNQPVWNYEGQ
SLKIETIIRPYEEWYAVGPLIQPRTEEPFIVFKICAYNQKRHKNNYDIIY
IIDKENGISQIVDNTQIFHDEKNLYSIFEKAVRFVTALPIRIDYE
>Rru_A3493 Hpt domain protein
MTMTMLDMGLLNELKEDLGEEVLAGLLAHFIGNSKARLTRLAAALESGAL
REAGREAHSLKGIAASLGMPDLAAFAGVIEETCRTGDLDSARAQAHGLPE
LLERTVVSLGDHYTLPNRS
>Rru_A2054 Hpt domain protein
MRSASAANGNKIRPMPHSLPIFDPTALDIIARDAGPEVVPRLVGVFLREC
GRRLVAVRADVAEGATERLAREAHALKSAAASFGCLRLAATASALDAAYK
RGDEGTVLAGAGDLIEALDDAITTLSALHPVD
>Rru_A2033 PAS/PAC Sensor Hybrid Histidine Kinase
MPRRMRDGLRQGLGSTLGRRVTRSLLIGIVVLEILVVAPSAILHRRSLLD
DLEADARALGLAAAAPPEASLGEWGRRLGVLLGDERITGAQLLRNDFAVA
GIGDRPDSHPGSQGRHADDGHSLDIAIPLTASETLTLRLDKHTITKKLWT
EIGWLALMTLVMAAAVILIAAIVAGRLVLLPLLDLRRLVVDIRPGEGRGP
SSEAIGRTDELGDLFRAVEDLRRRIEMSLLEAATQARFPSENPNPVIRTS
DSGGLLYANASARLRPGFLDGETLHPTIIALVRETTGRGEIMTSEIRLGT
RIYLLTAVPITHDRYVNIYASDVTDRVKAEIALRSLNESLEAQVLTRTRD
LAESEARTRAIIATMVDGLIVMDDQGRIDLFNAAAQRIFGYDESEVVGQN
AALLMSAEDAAGHAEPFGLHLWDGRSPLLNGTRKVIGRRKNGASFPLAVA
ISALPAPPPGGAPARRLFTGVVRDISDQIRHESDLRKVKDEAEVANRAKS
DFLAVMSHELRTPLNGVLGMADLLCDTPLDAEQRRYTRTIAISAEALLVI
INDILDLSKIEAGHLDLESRPFDPATLLEGVRTLMEGPARDKAIALRTSI
EGAKPPLRLGDEGRLRQILLNLANNGVKFTEKGSLTLRLKAGTGGALRFE
VEDTGIGIPKEKQDTLFHDFTQVSASTARRFGGSGLGLSICRRLVGLMGG
RLGFDSTPGVGSLFWFEVDLPEVVASQSPPPPPFQGPPLSILVVEDNEIN
RQVALGLLTKLGHRVTCVDDGAAAVRVVDTMPFDLILMDVQMPGMDGYEA
TRLIRGKPAPVGGLPIVAMTANATSGDVAAAMAAGMTGYLSKPITRKRLA
EALMAHGPGATVSTTG
>Rru_A1653 guanylate cyclase (GGDEF domain) with PAS/PAC sensor and Response Regulator Receiver modulation
MLFDRTIDVLLVEDNPGDSRLIQINLSEQHEVRFRVRVCEDLASACACLA
SARFDVVLLDLFLPDSQGLRTLERLMVATNEIPVVVMSGLDDFTTAMQAV
QQGAQDYLVKGKGDGELVRRAILHAIERQRFRRQLLMAEAAFRHTDTGMM
VTDAHGVVVRVNPAFLDVTGYGADEVVGRMAPFLRSDVHDGDFYRDIWKR
LGETSTWEGEIWTRRRNGEIAPDWLRINGVTDPSGGVVGYVVVFSDITFR
RRAEEELVRQATTDPLTGLPNRALFQKLLVSGLERARRYDRHLGLLFVDI
DGFKQVNDRFGHEGGDEVLREVARRLRRAVRVSDEVARLGGDEFTLLLSE
VKAESDVETVAAKVVQVLGEAFSIEDQPLVLSASVGVALSPADGRDAESL
LRAADEAMYRAKRGGKNRYALASAAPGQTPPPR
>Rru_A2593 Putative diguanylate cyclase (GGDEF domain)
MVCLATPATAQGRGEDLVVSRAYIEDPGGVLSIDDVVSRAAVPFDAVLSK
GFSASVYWVRLRVRAPEAGARTVLLISPSFLNDVRLFRRDPKAAQGWEVR
VTGNLHPFAERERKAVSLSFVVGVSPPQEDFYFRIKTRSPMTFEVQALSV
EDANEQDYWRDIIEVFFVTSMVLLLIWGVHQYFIDKQKILILFCIYQIVY
TLYGIALTGYFASLSTRFFPELIDLINAIIYISAVLTSVLFCREIFRPYK
PHPLLMKGFLVFILAFPFQMIAMVAGYSDLAIISAALLMKLAVFYYVIVA
FSLKKDLFPTRNMLRLFFLSMAVANGAFWAGARLVDDVRAMSLIGVQSLI
VDGFVVGVFFAWLVHGRSQYGRRETERQLHMIRQAYEVEQERKRQAEWEA
RTDFLTGLLNRRSFVDLAERELARSLRYQRPFTLLMIDVDHFKAVNDTRG
HLVGDVVLQNVARRIKETLRLIDIFGRTGGEEFAAVIVETGGPEALEIAR
RLCAVVARDEIVQPEGEPIGVTISIGLTRSNGRSISFSALMNEADQALYA
AKRAGRNQVVISQQALGAP
>Rru_A0376 Transcriptional Regulator, LytR/AlgR family
MKILIVDDEQLARDELRCLLDGVGDLTIVGECANAIEAIAAINRLSPDVV
FLDIQMPRVSGLEMLSMLDPERMPRIVFLTAYDEYAVRAFEEHAFDYLLK
PTDAARLEKTLQRLRRDHTPQDLKPLEKTRPLTHIPCLGHNRITLLKVGD
VEMVTSKPSGVYVIGPDGEERFTELTLRTLEEKTKLVRCHRQYLVNPERI
KDIAFADNGLAEIVTIAGQTVPVSRRFLAALKEHLGIG
>Rru_A0148 GTP-binding protein TypA
MTTLRNIAIIAHVDHGKTTLVDALLKQSGSFRENQKVDERALDSNDLERE
RGITILAKCTSVDWKGVRVNIVDTPGHADFGGEVERILSMVDGVVLLVDA
AEGPLPQTKFVLGKALALGLRPIVVINKVDRPDARAHEVHDEVFDLFANL
GASDKQLDFPCLFASGRNGWAVNTLEEIDGGTEGLTLEPLFKLVVDHVPA
PERVLDAPFAMLATTLEYDPYLGRVLTGRILSGRAKINMPIKALARDGRI
LEQGRASKLLAFRGLNRVPVEEAEAGDIIAIAGIAKATVADTLCALELDQ
PIYAAPIDPPTLAMTFSVNDSPLAGLEGDKLTSRVIAARLAREAEGNVAI
HIRETEDKDAFEVAGRGELQLGVLIETMRREGFELSISRPRVLYKTDEQG
GNREEPIEEVVIDVDEEFSGTVVDKMSQRKAELQEMKPSGGGKLRLVFHA
PSRGLIGYHGEFLTDTRGTGIMNRLFHGYAPFKGTIDGRREGVLISNGAG
DAVAYAIFNLQDRGPMFIEPGVKVYEGMIVGEHNRGNDLEINVLKGKQLT
NIRASGKDEAIRLTPPLRKSLEEALAYIQDDELVEVTPKTIRLRKRWLDS
NERKKRSKKVSEA
>Rru_A0666 Multi-sensor Signal Transduction Histidine Kinase
MTRQLLRDGTRGTRRWRERPLSPLPRAAPPAPPDAFGKRRFPGTRREGTA
FGSGLQRGRGAPVPPPPRRPPIPPAAKARHPMPSLTPASTKVTAPLLLAA
FAGLALLLFATVWLGNRTQIYATSFDQTQEIYMRATRTFRGLQDAETGQR
GYLLTHDPAYLQPYHDALSRMSEQRRLMNALIQDTPWESGLGAKLTPLID
AKLAELARTVDLAQAGRWDEALALVLAGSGKTTMDQARTVLEDTLAELRS
ALQTQSEEMKTRSAYLFWAVTFGGLFILCVAGTAFWLIVRANSSLAQAQA
QLRSLNESLESRVRGRTQEVQRANEEIQRFAYIVSHDLRSPLVNVMGFTA
ELEAGLKDLQARHPIETGDGALSEDERDLRVTIFEDMPEAVGFIRSSTAK
MDGLINAILRLSREGRRTISPERLDMTALVESVVSTTTHSIQDTGSTVSV
DKNLPEIVSDRLALSQIFANLIDNAIKYRLPGRPCAVTITGRIDRGRALF
QVADTGRGIEPKDHERIFDLFRRSGEQDQPGEGIGLAHVRTLVRRLGGEI
TVGSVPGQGTTFHITLPFDVGPYLEIEPS
>Rru_A0692 Response regulator receiver domain protein (CheY)
MSDTVLIIDDDANLLSAMKRQLRGRFAVTTAQSGEEALGLLGAGEAPAVV
LCDMRMGGMNGVETLRKVRDLAPDTVRMMLTGNADTQTAIDAINEGNIFR
FFSKPCTPQVLEAGLEAAVAQYRLVTAERDLLEKTLSGSIRVLMDMLALT
YPRGYARAARLRGWVRKMTRDNNMPHRWQLDIASMLAPLGLVALPEAVLA
KLHRREPLSDEERAMVERSPEAARNVINHIPRLQGVAEIVYLQNRGFDGS
GFPPEGPSGVDIPFDSRLLRILNDLGDVVGDSVPLAGHFAELEANARWYD
GALLRKVRLCLEAPAGKGIKPAFRKLSTDTLIAGMVVSDDVVGEGGRLLL
AALTPVSEAHIERLRNLARLRVIADAIPIIVDERGQPKVG
>Rru_A2555 Putative diguanylate cyclase (GGDEF domain)
MVFAFLTPLWIVVDLMILPWPLSGVLTGLRLTATAAFAGLACGFRNTERV
ATALVALALLLSIPCLFFAISVPSLSGIALEPTQQVLASGYAFLPYVMVA
GLAVFPITAVEGVLLAFPLIASQMTVALLGFPLEPFSYYLGALWLLTLLA
VVATLAGMSQLHFMTQLVNQASHDGLTKSYTRRVGEELLDVQFNAALRAG
LTLSIAFCDLDHFKSVNDRFGHEEGDRALKRAAEAFRSVLRRGDIIVRWG
GEEFIILMPNTSAEGALQAMLRLREVGLGLLPDGTVQTASVGVAELTADH
SRNWSDLVETADKRMYKAKKTGRDRVVTMGGDIVVARFPREANAA
>Rru_A1158 Osmosensitive K+ channel Signal Transduction Histidine Kinase
MAPADRENRPSPDALLAEAHREGRGKLKIFLGAAPGVGKTYAMLEAARER
ARDGVDVAVAVVETHGRRETEALVHGLDVVPKRTLEYRGRDFEEMDLDGV
LARRPALALVDELAHTNISGSRHLKRWQDVQELLDVGIDVYTTLNVQHLE
SLNDVVERISGVRVRETLPDSVLQQADEIKLIDLAPEDLLKRLEEGKVYV
PDQARRAANAFFSRGNLTALREMALRQAAERVDAQMISYMHAHAIQGPWP
ARERLMACIGDDLAAESVVRLAARSAERRQAPWIAVYIETARHLSLSEEV
KDRIARALRLAEELGGEATTVQGDDVVAEVLSFAKARNITQIIIGRPRRH
RQRWFGGGDTAKALLARAEAFNVTVIGRENASPSPIARIRRDMPKDWLGY
GLATLAVALATGFSVLIDMWMPVPNISVAYLMAVLLVAMRLGLAPSIFAS
LLSFLIYSFLFTEPRLTLAITDSHNILTMVFFLVAAVIVSNLGSRLREQV
QATRLSARRTGTLYDFSRKIAAAATQDDVLWAVVHHVASTIHGQSLILLP
ENDRLAIKAGYPPEDTLDDKAAAAAEWAWTHGTRAGAGSATLPTSPWLFL
PLKTVRGPVGVMGVQMAGAGIPPPSEARLLETLADQAAVAIERTALVADI
EAARVAGERDRLRTALLSSLSHDLRTPLVSIMGSASALVNYQDTLSDDAE
RELALTIQDEAERLNRFVQNLLDMTKLGAGALKPRIDWADFRDIVGGALE
RAKRLIGQRKVRIDLSDDFPLLCVDSVLMEQVVFNLIDNACKYTPPGSAI
TVWGRPRRDKVVVEICDQGPGIPEADREQVFDMFYRVKAQDAQIAGTGLG
LAICRGLVEAHGGTIAAEPGINDCGTCIVITLPLLVEPELLGAEEKV
>Rru_A2839 hypothetical protein
MTIPWQVLLDGTIALLLSVFIGYAILLSRQLRELRRNREDMARIIATFNE
ATARAEAGIPRLRKTAEDAGRALDDHVAKAQTLRDDLAYMVERADGMAGR
LESVVRAARGEARAAEAPAGNPRAAEGRGGQDSRAQEARIGENRPGEVRG
VEVRGVEVRGVEPRGLDPRGIETRGGEAPRESVPPEQDARLAAVRQRLRV
RPEGGRGQGPLIGTQPLGGLGSARDEGEVPFDDERSEAERELLRALQAVR
>Rru_A0158 chemotaxis sensory transducer
MLTNTRIAIRIWIPVALMIVALIGSSVVVLNGEHKGMMRDRTAQVQSIAT
TALGIVKQAQSQQIAGKLSEAEAKTWARTALRAMTYGKGDYVFVYDSRGT
VLVNAPDPSKEGENRMGLVDPNGLPIIRALVDGTRNGGSVVLPYSWPRPG
ESAPIAKISYAVGFEPWGWLIGSGLYIDDVETAFAKEAFTAGATIAVILL
VVCLIAYAIVHSITKPLVEMTARMVRLAEGDLAVEIKGATRRDEIGAMAR
ALEVFRRNGQENRALVDRQKQAEAEAVKERTAMRQALANDFEQGVGSLLR
TLVGASEDLNGAANALNASANATRTRVDEVATATEAASANVQTVASAAEE
LSASISEIGHQVTRASQVTGDAVRDAGKTSQQVQTLIAAAERIGEVVKLI
TTIAEQTNLLALNATIEAARAGDAGKGFAVVAGEVKTLANQTARATDEIT
RQIAALQEETRSSGTAISSIAGTISEINAISEAIAAAVEEQGAATREISR
NIQEASQGTSVVSDNIASVSDSASQAGTAASQVHASAEALRDTAKTMHER
INAFVERVRAG
>Rru_A2554 chemotaxis sensory transducer
MKISTRIALIGGVAISGLILVSVLSWLGANHLERLDATKSLALEQERLTR
VIRYDFLNSRRHEKDFQIRRDEAFARALIDETAPKVREGLARLRGLSEEP
DIGRIEGGYQRYVEQFSAVVSLYRKLGLDETAGLQGALRQAVHRIEEKIG
QADDPRLMVSMLSLRRHEKDYLLRLDPAYGAKFTKEADNFLSLLEGAPLN
SADKAEFTQRLADYRQSFLSYVTTRQELTAAVKTLSEVFAEVEPIIEAVT
VKTQAVFAEAAQEATRQGERTHTMMLAALIAIGLAMIGLIAAISRSITRP
ITAMTGAMGDLAKGNLDVAVPALERRDEIGAMAKAVEVFKRNSQERQRLE
EREKADAARAEARQRKIADSTRRFDATILTMIAKIKAAVEQLHSASNALS
ANAEETGRQSGAVAIATANATANVETVASAGAELAASIDEISSQVQQTAA
ITRAATDEMAEATHKIGGLSEAAQKIGDVVGVINALASQTNMLALNATIE
SARAGEAGKGFAVVANEVKVLAGQTARATRDIASHIAAVQGEAGAAVSSI
ALISGTMTRINEFTAAIAGAVEEQGAATAEIARNVDQASQGTREVAINVA
GVAEAASETGRMAQGVFQSADDLQSESATLEREVERFLKEVREA
>Rru_A3103 Multi-sensor Signal Transduction Histidine Kinase
MVMVVGYCLACAAFLVLIVQAVSGRRRTGRERLVLAMPLVAGALWAGVTA
ARAVVPLPDWAFVLAEIGRAACWIGLLAAIVLENRERRLLAVSLLTIVLG
GGAVILHAALHDRDAFWSLTLSSLLLYTIAGFVLLEQLYRSAREQQKWMI
KHLSIALVCFFGFDLYFFSTALVMGGLDIDLLTARGYVAAFLALMATVSI
SRLNGHSERLHLSHGAAFQSMILVACGLYLVSMAAIGYYLRHIGGAWGGP
LEIVFFFATLALLGIGLSSGALRARLRVIVSKHFFKYRYDYRNEWLGFTA
TITGAGSEGLHERIVKAVAAIIESTGGALWTRSVEDGVLLPTARWNMGAS
PLPAIPLDSSLCRYLQSQAWVVDLSEALTFPDRYPGLTLPDWLAEHPRAG
LCVPLILREELQGVLVLGPLRAPRKLVWEDLDILKTVGCHAAGYLSEERA
LNRLSDAQRLDAFNRRFAFVIHDIKNVVSQMCLMAKNAERFGDNPDFQKD
MIATVVHSADRLQKLLQDLKAAGQTPDPAALSPAAVPLAEVVREAGERWR
ALKPDLLVDLAPDWAPNSAIVCSGREMASVLDHLLQNAIDAVATTGGTVR
LSHREGGGQAIVEVADEGPGMEDAFIADGLFRPLNSTKSTGLGIGAFQCR
EIVRRMGGQLTVTSDRGRGTRMTVLLPDRTAQARRGAA
>Rru_A1875 Multi-sensor Signal Transduction Histidine Kinase
MLFAPPRGTNDPEDFPGEGSDPRTLFPAPLSARLVLLGGLFTLFSTVAIT
LWLIGLAARYPDHALLAPVAGGGAVIVTLTGVCLIAFLFRERRHLAAERR
LALSEARLQTALENTGDGIWDWQIPGDVVHLNGALIARLGFPVDTPSPTA
TWETMIHPEDRPATLAAFHDHLAGKTPSYHARYRWKLPDGVMIWVEAKGR
VVTRDRSGKPLRMTGTLSDATPQVEAEELMREKSRRLEESNRDLEQFAYV
ASHDLQEPLRMVSSYLGLLRRRHGDQLAPEALEFMSYAEDGAKRMSRLIL
DLLEYSRVTTRGEPPETVALAEVIDEARSNLRMIIDETAARIDLLGCDRT
VLADRGQVVRVFQNLIGNALKYRSPDRPPIITLRCGEDEGWVNVSVADNG
IGFSPEHAERIFIIFQRLHGPKAYEGTGIGLSICKRIIERHGGTIEAQGT
PGEGALFRFTLPRAPGPSRSTGGAPDNQDRRRRDQGRGADGRGRDQGRLA
P
>Rru_A0665 Response regulator receiver domain protein (CheY)
MSSAAQSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLF
GDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTT
TDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFSVMQVPETN
>Rru_A2907 Anti-Sigma-factor antagonist (STAS) domain protein
MKLTVTEHPARPAILEVSGAVDLRSSPRLREALLRALDSGRGLVVDLHKV
GSIDSSGVSSLLEALIKARDTGLDFTLTRVSADAMRVITLGRLDQVFPIR
ASVDDALAAAG
>Rru_A3646 Protein tyrosine phosphatase
MHRILFVCTGNICRSPTAEVVFRAKAQAAGLGERVFVDSAGTAGYHVGEP
ADGRSAEAARRRGYRFEGQIARQVRADDFETFDLILALDAGHLAALRRLC
PPARRDRLALLMDHASSPWVGTDVPDPYYGGAGGFDDVLDRIEDACDGLV
TRLNAAPLVSGKS
>Rru_A3188 Histidine Kinase
MWLAGALAATYLVISYAVAETLERGFDETLAALVDTLTAAAEITDDGTLV
LLRDPGDPRFTRAYSGWYWQMTWGDQVVRSRSLWDQTLVRGEHASDAIHI
HRERDPRGRPLEVVERDIFPPRPAAGTPPPSLPAQPVHVMVAGDRTGIEG
EIARLQGLLALCLAGLGGGLLAATFAQVSYGLRPLDRLRAALHRARDDPS
LRLEETQPGELAPLAQALNALLDHNASLIDRARAHVGNLAHGLKTPLAVL
RSAADDGPTVEADMVRAQTATMGRLVERHLARARASVGQTAIFSARAPIL
AAARRVGATMALIHCRPLDITIDGAEDAAFPGAGDDLLEILGNLMDNACK
WAKARVAVHAGREAGRIILTVEDDGPGLAEDEARTAPRRGARLDDSLPGH
GLGLDIVADLAALHGATLTLDRSRLGGLRATLRLPPAGWGDKPADPRDKG
RSRPAE
>Rru_A0203 hypothetical protein
MSDKSSLSGAARVLVVSEDDKVLRLAEAELCDRFSVFTANEVAGALRLLE
EEGPFAAVLTDQASRATTIDGILPELIGRHPGTALMLLDATSTRAPHGVT
VH
>Rru_A0985 Putative diguanylate cyclase (GGDEF domain)
MQIKPERTLLSAEATLIASGTIGVIAILGLVTVLLANLWKDTTRDAERSA
SNLIRLIDADVRRTIELYDLALSGIIEAEKFKTIKDLSPEARHALIFSRV
VATHYMGGLLRLNAAGDIIADSTSLEPRVGNFADRDYFQLHKADPDLGLL
IGRPIKVRLSDQEWRIPITRRVSTADGRFDGVVMGAMRVSYFDHLFGKLD
IGSQGSITLLKSDGTLLARRGLPGELDMVGRNGLDFPNFHRIINGYSKNF
SGSSAYDHIRRIYSFAHVENLPLIVVVALSANEVYGGWIQAAIVVGGITF
VLCLGVGAVVVLLLREFRQRRLTESALSELAVTDGLTGLCNRRHLEEVLR
VECARSARNQQPLALLMIDVDHFKAFNDRHGHRIGDGVLVDLAVIIRALL
KRPADVGARYGGEEFAVILPDTDLAGGLRVAEAIRARMAGRPPVGQDLRA
GTVSIGVVSRILTPGYGVDDLVMDADKALYAAKGAGRNRVVPAADEADRE
DLISLSTE
>Rru_A2229 Response regulator receiver domain protein (CheY)
MAIGDDPHSILVVDDDPDIRAIAALALVDLGGLRAVFAANGPEARREARA
QTPDLVLMDLHLADGEDGRALWRVLAGEEGAGKVVFVTAARGGEAGVLMA
EPGCLGLITKPFDPLTLADSLRQLWMARS
>Rru_A3037 chemotaxis sensory transducer
MSVITRSIRGKLFAAFLAATLGVLISSSLGIILVSREGDLAHEAMTGLAP
LADAAMETKISATRAHLVFEEIMAGDETESISEVWSLLDDADWYLLAMLN
GGAKAKETFVKTDNPAVRVRLGEAREVLAAFRVTAEGRYKAFGDQGRGQT
VAGTDLDVAFDAAFESFATLTDSIEELVHTQIDEQVEKIEQTKTSSLWLM
SATALIALAVSLSLAVVIGRSVSRRITDLSTTMGQITAGDHAAPVPHTTS
TDEIGVMGRALVTLRDGVDEAARLRASLQLKAEDEARQRTHLEGAIIGFD
RSIGEVMASLRDVVEVLHGAVADLEHEASTVDQLTSGVSAKTAEAASNVE
SVAASIEELSASVREISAQAARSSEAAGLAAREAEGANKLIGGLQTATDA
ISEVMALITAIAAQTNLLALNATIEAARAGDAGKGFAVVAGEVKTLASQT
QKATEQIHGQVDAMHDVTRQSVAAIGSIARSVDTMEAMAASIAAAVEQQG
AASGGIARNAEQASAATGVVSEQIGAVRDSSDATSRASRALNEATARLSA
QMDLLSHSVESFLTAVRR
>Rru_A1500 Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity
MPRRSFPWAGAVRSRAEEGVSPTDGASEGKGGSGEADRFRVVGIGASAGG
LEACKALLAALPDRPGIALILVQHLDPTHESMMVALLALQTTMTVCQAAE
GMIVEPDHLYVIPPGAYLSVAGGTLHLSPPQARHGARLPFDFLLHSLAAD
YTQRAICVVLSGTGADGSLGLMALKERGGLVIAQDPEEAGYDGMPRSAIA
TGQVDLVLSLAKIAETLVGEDLPPGKPALPEEIPSSKGKGKGKGWVYAVI
DLLRARTPYDFTHYKPGTLERRTERRMTLASIEVGDSARYLALLQEDATE
RDLLAKDLLINVTGFFRDPKVFDVLAEKTIPQMVATHPLDQPLRIWVAGC
STGEETYSLAILFREAIVSAGRAVKVQVFASDVDPDAVLSAREGRYPSTI
EADVSAERLARFFTRDGDDYRILPDLRSMVVFTVQDLLADPPFSRLDMVS
CRNLLIYLRPEAQAKAIGLFHFALREGGILLLGNSETAGNVEGRFEVLSK
SARLYRRIGRGGRVDLRLPVVGGDGSGAQRRPLFEPARSRQATLADLCRR
LVVEAYAPAAVLITLKYDCLYFLGAMDSYLRVAAGHPASDLLSLAREEVR
TKLRSAIEMACETKTRTLVTGGRLTHGGTVRGFSIAVHPVSHDGEDLLLV
CFLDEVPSERRADTPTSAEHAPRVAELEQELEITRSELRGAIRNLEISSE
EQKAINEEALSVSEEYQATNEELLASKEELQSLNEELTALNGQLHETLER
QRTTSNDLQNVLYSTDVATLFLDTALNIRFFTPATKLLFRVIPGDIGRPL
ADLSPLVADDALLGDAAKVLKTMTPIEREIEARSGSWYLRRILPYRTQDN
GVEGVVITFADITERRWAADAREVAKRQAQIANMAKSRFLAVASHDLRQP
LQTLTLLQGLLAKKVEGVQSRVLLARMDETLGAMSSMLNVLLDINQIEVG
TVEAERVVFPINDLFDRVREELAYQARAKKLDWSVVSCGLSVTSDPRLLE
QMIRNLLANALKYTKQGKVLLGCRRRSGSLSIEVWDSGIGIPPGELEAIF
DEFHQVETPAQGQGRGLGLGLSIVRRLGDLLGHPIGVRSRLGKGSVFTIN
VAIAPAAAEKPSLPARRGAAEVKVDADGQRTGEILIIEDDPDVRDLLDLL
LKGEGHRTVAVAEGGQAVALAEGGSIRPDLILADYNLPNGVNGLGVSATL
RDVLDRPIPVVILTGDISTRTLHDIARHRCVKLNKPVKPGELTQTIARLL
PPPVGPAAARLPAPPPSPGPGGPLPLIYLVDDDASLRDSLRALLEDDGLK
VEDYESSEAFLAAYRPGGGEACLLIDAYLPGMSGLDLLERLKKENRLLPA
IVITGYSEVAMAVQAMKAGASDFIEKPVGRTELLISIDRALEQHREHGNS
GKMRLWRDAAKARLASLSARQREIMEMVLAGQPSKNIAADLGISQRTVES
HRALIMKKLGVKSLPALVRLAQAASDGEVGEEG
>Rru_A2726 Response regulator receiver domain protein (CheY)
MTPPLSASTDGDPATPPTGAEDGPGGALCVDLRDIVRPQSRRMIAHHARE
FLDARGLLPCEVIFSPLLLGEVRLSPLFEPAMAAAARAQAAVGGPTAEER
RRDLGTLVDFLGDQLDAAASHLPALPLDAGGFAILTDNFGPTPDDREWVL
LGLMVSRILALHADRPAKVKALLDLTVGQNTDHGVGFLDPFLADGLADRA
ILEEMLGLPPTPMDLLADLALLYRGSQSQPSGRSEAALRLFLLFSQHALP
ACRDSLTEHLHGVLASSQPLSEEESAGEDITEADLLVALQTIADLTNQLT
IDGAVMGGRRTAQLLDARILELIGGAVLPRVLDSKPLIDRLRTLFKVQRL
SVGRTSRKILGQQIVDVIGDRDFPGRLRDEVEGEDLQLRVLGEIAALVDE
AALGEATRRRLIETLDEVQYGLIRSSGLLGDLRRERLRGMATFMRVLDLA
ADGGFVPGRCLDEARDLLIRHARQPEFLRSCLAHLQGVGGTAGMIGELAR
RLRDAGIPFRDVTRAKVLVVEDEESAAAYVRMVLGDMGIEDVTLAANGRD
ALQRIVGWEHEIDLIICDWMMPVMSGLDFLKQIRAVAPTVPFLMVTALAT
VETVRTAMAHDVTAYIAKPFPPEQLEEKVLVLFNRGGESDLPAPPPL
>Rru_A3229 Two Component Transcriptional Regulator, LuxR family
MKILIADDHELFRDGLRLVLSSLDPALEVVEACTYDEALRLVSTNGDGAE
AFTLILVDLVMPGLPWSEGLQALRLAAPETPVVVLSASEDRKLVRDAVRL
GASGFIPKTSSSRVMISALKLVLSGGMYLPAALLDDEVIVEPVAVQAPAG
GAGGPTGPTASRLTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTA
ILKALGVNNRTGAVIAAQRLGLTG
>Rru_A2078 chemotaxis sensory transducer
MTSLNNLSVGRKLILVFSIIFLMVAGLGSFAIKALSDMNRAATDVTETRL
PAVEKARSLQFLVSSLRTNQMAYMVAQGDDFDATREAVETIEEVVYDTRE
SYEKLMSSPEEREAYGVFTDNFAGFSAGMTRIAQLSQAGRIDEARALTWG
ETQPFYLALVQSTDRLTELSQTQAAKASANIDHTNKVARIGIIAALIAVL
IIAAIAGALLRQTIAAPLLALRGTMERLARDDTAVEIPGHERKDEVGAMA
RAVLVFKDGMIESERLRARENAERIGKEERANTLAVLTHDFDTQASSVIN
DVAEAAGAMQVTASQLTQAADSTAEQSTAVAAAAQEASTNVQTVAAAAEE
LTSSIGEISRQIAQASQVSQKAVDQAAHTTGIVGGLEQAAKRIGEVVAMI
NDIASQTNLLALNATIEAARAGDAGKGFAVVAGEVKSLANQTARATDDIT
QQIGSVQTATGAAVEAINEIATTIGEINEISANIAAAMEQQGAATQEIAR
NVEQAATGTDQVTRNIHGVNRTVDDTGHSAQEVLNAATRLRDESAAMQTL
VTTFLDKVRAL
>Rru_A1654 Response regulator receiver domain protein (CheY)
MDILLVEDNPGDARLASEAFKEGGLPTNLHVVQDGIEAMAFLRRERLYAG
VPRPDLILLDLNLPRKDGREVLEELKEDPNLKRIPVIVLTTSQAEVDIIR
SYDLHANCYIVKPVDFDQFIDVVRGIEQFWCTLVKLPPR
>Rru_A1384 Multi-sensor Signal Transduction Histidine Kinase
MRLSDLSRILPLRSLRHRLMLTSLIVVALPIAIVGIVFEHEGRQALLHEK
QSKLFGLTQILDAELGPGFDSLLADLPSGWTDRAAAIAHLSAKLTLQTDR
IAGIGDGIAVGYYSKRLDAIITYGPSASYAKTIGVSITADHPGRAVMDSA
KPRVEFGTLVRGQIMNAMLPIIRNDEVIGYIWANEFIEAIENQQNVFHRA
VLFVSLAGIGIAFFVVNSMSRRLSQEVGVIVDGLAVMENDLRRPLPPLRD
ELGNIVDAINAMAKALLDARSLTENILASVADGIVAVDLKGTITAFNPAA
EQMYSMSADAVIGKPYHALFISGTDMVSVLLDTLETGCTHIGVTPDLPNL
DGTLKISASSSVLRDGEGQPIGAVVVLKDVSERDRLMVQVMRADRLAALG
ELTAGIAHEIRNPLTSIRGFVQYLMECASPKEWQHYGPLIIRQVDSLNHI
ITELLAFGRPRAPRIDKVHLDQIAQEMAFLARGKSEARIEMDLEGEVPAI
EADGESLKQALLNLIINAMQAISKDGSVTVAVRRLGDDHVMVKVSDDGIG
LAPDYLDKVFDPFFSTKPAGTGLGLAVVHRIVDAHQGVITLDSRLGEGTV
VTIRLPVVRSKQESPPC
>Rru_A1197 chemotaxis sensory transducer
MSIKRFMMMCFFSISIILIVMAFLLFRTSWQESHRAKDAGDLVELLGAAT
LISETLAPERGASSVSLDGGPEARKTLLTTRERLNQTFDRVESTLRASPS
DDGRRALQTITKVRADLAEWRQKVDATTDGDPQRIVAFRKELIAGMLGLL
TEVSKLTSALEHQLGLTDAEVTVPAALALITGQLRDNAGRQSTLHLDAVV
GKKPFTPTQLAQMSLLDGRIQLLWEQLTRAGTADDSSPRLRAAVEAVDAQ
FVKPFAAARARVTAHAGDGAYDLEGAEWRKMTAPMLQSIMLVRDAAIDDA
RQLVDEKIAKASFALWELSGLLGLAVGIVAVIIIVTGRRVTAPLDHLTAT
IVDFAQGAREFAVPHTDRRDEIGRMAKALEVLRGNALAADTQAKHAEDER
LARDQRRQKTEVVTSEFVGSIDGVVAGVTRAAEQLRAETKSLLQTSELSS
RQSEVVATASEDASANVQTVAAAAEELSNSIQEISRRVAETAATTDGAVQ
QAESTNAMVRSLTEAVRKIGDVVKLISDIASQTNLLALNATIEAARAGDA
GKGFAVVAGEVKTLANQTAKATEDIQSQVAAIQVETERATTAIGAITATI
AAVNQHTIGIAAAVEQQGAATTEIARNVQQAANGTAEVSSSIGKVLEAAH
QTGAAATKLSKLADSLAGDSTLLDQTVGGFVTQIRVAG
>Rru_A2038 Glutamate-ammonia-ligase adenylyltransferase
MQEFLFPSATARFPLPADQGRLDRGLERWRALARDDSEGIAPSFVKNFLD
DPRGNALLAAVFGNSPYLSAALIREPAFVETLALRGPDQVFPDLLEGMAR
AIAATSEATVVMQVLRVTKRRAALCIALADIARWWSLEQVTAALSALAER
SLRAVVAHLLTRRAASGDLVLPHPEDPERDSGFFILGMGKLGGGELNYSS
DIDLIVLFDAEKARYQGKRSLKECYVGLTRDLVRMMEERTAEGYVFRTDL
RLRPDPGSTAVAISTEAAEIYYETMGQNWERAAMIKARPVAGDLVAGQAF
LTHLRPFVWRKYLDFNAIQDIHSIKRQIDAVRGGAEIGVAGHNIKLGRGG
IREIEFFAQTQQLIWGGRTPKLRSKSTCEALADLVEVGLVEAPAADELTE
AYRYLRTLEHRLQMIDDEQTQTLPLEPDKLRHLALFMGEADAEALGVAVT
TRLRRVESHYAGLFEDAPSLSQGGNLVFTGGEDDPETLATLRRMGFSNPE
GISATIRGWHHGRYAATRSTRTRERLTELMPDLLKALAATAQPDTALLRF
DEFLSKLPTGMQLFTLFQANPGLLGLLAEIMGDAPRLSEHLARNPRLMDI
VLTPGFFEGAPSHADMTRSLDALLADAVVFEDTLDLVRRWANDLRFSIGV
LALRGLVEAEEAGQSLSDVADVALSRLVPRVEAEFALAHGVVPGGAMAVV
ALGKLGSREMTATSDLDLIVVYETPEDSEGSQATEAGQRPLPVSAYYTRL
TQRIVNAITALTAEGALYEVDMRLRPSGNKGPLATSLTAFRRYQADAAWT
WEHMALTRARVITGPEGLRARIDAVIAETLTRPRDAETLARDVADMRARM
ERDKPAASPWDVKLAPGGLVDIDFLAQFLQLRHAPRTPEVLAADTVGALR
RLSEAGYLDPAICRFLCAHHRRNLGIQATLRHSIAGPPRDSDLTPGLKAK
LARATGWDDFETLRAHMADDGARVRQIFTEIVDPTRPPPPPPLEKGPPMT
EIPVAPGTAAPDFSLPTDGGGTLSLADLRGKKLVLYFYPKDATSGCTTEA
LGFKEQAEAFAEAGAVIVGVSKDSVKSHDGFKAKQGLPFTLASDAEGAVC
QSYGVWVEKSMYGRTYMGIDRSTFLIDGEGIIRKIWRKVKVAGHVAAVLE
EARAL
>Rru_A3478 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain
MAEVKTRDEHDEEPPRFDAQAATIAPETILLHPGPAAIVALGGGEALCNA
LGEPLRPLFSPEAADSLLPEIRSALETGVPQQKVVDVGRDGLPAQFDLII
LPTAEPGRVVVIGRDVTLERTLRKALTDSRQRYKDFVDLSIDFTWETGPD
GRFVFVSPDGALGYAARDLVGALPWTLMDITDAQSGATVFNSPVRVKDVD
IWVRRRDGTLACLKTSSMPVFDASGEWSGGRGVCHDITEQHDRDKALARA
LNRQRVVANVERTFRDEIDPSNMLNVAAEALARSVGGDGCLIYRAALDDG
PDRPFLPRGRFGEGGDEKVVLTLEALGEGAHAQTTPDGKWTVLVAASRYR
RQINGAVVLWRRIERGAWSEDDHLLIVDVANQIGSANEQIGQHDRIISMS
RTDGLTGLLNRRAFFDDMDRRLKGPPGLVERRAGEEAARRSERPARSALL
YIDLDNFKWVNDAHGHLRGDEALMTVRKILTDHTRATDIVARLGGDEFAI
WLEGADAEAASAKAAEILAEDALLRPFDGSPDRPLSLSIGLAIHDPASGE
GVEDLTARADMAMYAAKHGGKGRFSLSLPPPHTPT
>Rru_A2752 Signal Transduction Histidine Kinase
MRLKWPAACPLAAEGPIRKAPMTSAQAFAQIEDGVAFAQAIVDTIREPLL
VLDKDLRVVCASRAFYQTFKLRPEDVAGCPLYRVGEGQWNIPELRVLLET
ILPQHAVMDAYEIDHDFGESGRRTMVLNARTVVEKGKGERLILLAMEDVT
VQRAAEAAMRDLLAEKDVLLQEMRHRVGNSLQLIASILMMKARAVSSEEA
RHHLQDAHQRILSIAAAQQQLQASRPGEAIALAPYLGRLCETLTATLIGD
ARPIVVKVEAVGSAPSNEAASLGLIVTELVINALKHAFRADATAGEILVA
YESAADGAWRLSVTDNGVGTPTESAAKVTPGLGTSIIRALGHQLDARIES
VGGPRGTRVSLTHGAFAPPTVAAS
>Rru_A0522 Response regulator receiver domain protein (CheY)
MKSCLIVDDSKVIRMVAKKILQELQFETLEAEDGQVALDACLKALPTAVL
LDWNMPVMNGLEFLQRLRKLPGGDQVIVVFCTTENDIDHIQEAIAHGANE
YIMKPFDSEILQAKFQQVGLLDA
>Rru_A2226 Periplasmic Sensor Signal Transduction Histidine Kinase
MIGLWGLDPAQPVLGRIRRILRLDHPLLRPFARAIKMILPKSLLGRSLLI
IVIPLILLQVITATIFFDRHWDTMSRRLNAAVGSEIGMVLDFMAAYPDPE
EREWMFALAYGRQQLAMRFEPEATLPGTSPLAQDDDFVARTLYSSLAEHT
DLPYQVDVIDDKTLEIRIAAPDGLLTVEVPRKRLFSVTTYIFIGWMTVSS
VILFAVATVFMRNQVRPIGRLASAADALGKGRDVPNFRSEGALEVRRAAL
AFTRMRDRINRQIAQRTEMLAGVSHDLRTPLTRMRLQLALMEGEEGTVEL
TEDIAEMERMVEGYLAFARGEGTEETVATCITDLVDEVVGRMRRNGARID
LHTEQPLTVPLKPNAMERCLANIIGNAHRFGQHIAVRVGVRDGHVEVVVD
DDGPGIPPERREDVFRAFFRIESSRNPRTGGTGLGLTIARDVVRAMGGDI
FLENSPFGGLRARIRLPM
>Rru_A0707 BolA-like protein
MAMEAGQIKTLIQDAFPDAEVTIEDLRGDGDHYAAQVISAAFTGKTRVQQ
HQMVYDALKGKMGGDLHALALQTKPKD
>Rru_A3100 conserved hypothetical protein
MLRRRAGGEGLGLVIGPYQVRLKTRAPSLLRSLRLLYDDAPLSDDAFHDF
HIDIAAPRGWLRPWRRQAVFRLDGLSTFEPLPEAHAPILFEWALNWCIAT
LAHDHVILHSAVLEKDGRAALLPAPPGSGKSTLCAGMVAAGWRLLSDEMA
LIGVTDGLLSPIPRPVSLKNASIEVIRARAPRATFAPSIPGTPKGTIGLM
RPPREAIVRRSHRVAPAWILFPRWQAGAPLTLTPRPMASATFDVLRNCYN
LAVHGQAGFDRLADVVGGCACFDLAYGDLDEALERLAGLAVTR
>Rru_A1584 chemotaxis sensory transducer
MLRNKRVVVKISVIVAIMGLALCVTVGWLLKSQYDALLDERVAQTRGLTE
AAAGVATKLQAEVSAGKISRDQAIGTWKTALNGMIYGGNGYLFAYAMDGI
NLVLPPRPDLVGKPAADRGVFLALQAAARRGPGGGRVDYVWPRVKDGPPI
PKVSWAMEVPSWDLLVGTGVYVDDVQAIFWAKLREAMLIGGLLSAVALLL
VSLISRDLSAVLGDIAKRMALISGGKIDIAVPHQDRRDEAGAMARSLEVF
RGTVAETEKLRGDQERLKASAEAARKANLVELAKRFEDSVNSVAQAVAKG
ARTMDENARTMFSLANVTREKAGQSSAMSERTNATFQTVASASEQLSASI
REIANQTDKARVTSQQAVETADQSADRMAGLVDDAEKIGAVITLIETIAS
QTNLLALNATIEAARAGDAGKGFAVVAHEVKNLSTQTRKATEDIRGQIER
VRASVSAAASDIATISDVIHDIAKAAGAISIAVEEQGAATTEISRSVQEV
LSTSADASRDIHTLAEAARETESTAGALRDTAGELGQAAASLQEKVDGFL
GDLRQG
>Rru_A0893 stress protein
MGVSLTKGQKVSLSKDGAGLTRIFMGLGWDAAKKGGLLGGLFGGGGGDID
LDASCLVFDDAGQPVDQIWFRQLSGVNGAIVHTGDNVTGAGDGDDETIKV
DLSRLPASVKSLVFVVNSFRGQTFDKVANAKCRVVDDTSGVELASFTLSE
AGSHTGLVMAKIYRHNDEWKIHAIGEKTVGKTFHDMMPAIQGTL
>Rru_A3638 Two component Transcriptional regulator, Winged helix family
MERPRPCEGPGGRAARASLCTKNTSAMVSRTLRKERRVQQTMTSGKRLLL
VVEDDSFRRALGEQLRAQEDFGPVDEVTSLAQALERAATAVFDLLLVDLG
AGEGAGGGETVCRALREAGIEAPLVLLAGPGAPPPPTDLGPVERVDKPVR
LGALLALLRARMKAKEGGGEESFIVGPYRFQPADKMLVGPGEGRSLRLTE
KETGILAFLCRAGGKAVDRETLLHEVWGYGAGITTHTLETHIYRLRRKME
ADPVKARVLLTEDGGYRLGS
>Rru_A1295 extracellular solute-binding protein, family 3
MALQEKPEISEMAMMTTKASWKAMVAGAAALMTMVAASLPANADTLEDIK
KAGVIKAATEMQFPPFDFLEGDKYVGVDRDLMDEVAKELGVKVEYIDLPW
TSVLPGLEAGKFDLVIAPVTITKERLARYAFTLPISEGTAALMKRADDDS
ITKPEDIAGKTIGGGKGTSQLGQIKEYAAALPGKVEFKEYVDSNQSYADL
AAGRVDASVNSYPNLAYAAAQRPETFAVVLPPFGKTTYFSWVSRLGEKDA
SLVEAVNAALLKLGEDGRMSAIHEKWFGKGVDLPKTIPEPSF
>Rru_A2325 MCP methyltransferase, CheR-type
MAISDEEYTKFCDFFYRKTGISFQLSKKYYVERRIIDRAIKTGSCDFREY
FTFLRFDMSGEEMQVLVNSMTVNETYFFREDYQFNALVANILPAIIKTKR
RSMPIRIWSVPCSSGEEPYSIAITILEKWDQADNWDIEIHASDIDSKILA
EARAGIFGARSLARVPPAILLKYFTPRSEGSYQICEGLRGSIDFSLVNII
DTKQTKNITGIDVIFCRNLLIYFDDITRRETVEMFYQNMAPGGFVCLGHS
ESMSRMTSLFIPRKFGDTIVYQKPQE
>Rru_A0693 Signal Transduction Histidine Kinase
MDETTAELHKLISQQAAIAHFGNFALREPDLMVILTEAARLCAEGLSVPF
CKVCRYRAAENDLLVVAGYGWNPGVVGHVVSRADLTSPQGRAFITGNPSI
CDDVSREVDFELPSFYAEHGVVSTIDVLIKGDDLPYGVLEIDNDQHHDYD
QHDIDFLTGFANVLAEAVATSTRTQVLNESVNQMRILVEEKDRLLEQKNT
LAEELQHRVKNNLQLVYAMLSKQLGDTVDPFERKGLSAIARRVFTLAQVY
DHLLGREMTRTTDFGSYLKSLCASLADIQGSANDEISLTCTSDSLSLDLD
VVTALGLAVAELVANAYDHAFPDGRGTITVSALKQDSEDARAILTIADNG
KGFSINGGTKRHGVGLVRRLIEQIGASATVVSDQGTVWTILIPTPGQAAS
>Rru_A1404 chemotaxis sensory transducer
MRVTIKIKLALTFAVIVLLSMATAGLGIQKMGALNESFVAMVDGPVRQIQ
RAQELFSDLLTVSRSEKSLLVADTPELIAMYEQRIIKEQKVLDGHRLKLE
ENATDVNRQNVDIFSDLWREYAAVQGKIIALAKDDRAGEAATLSRGQGRQ
ILERVDATLVDLIADEQKSMDQTQADALRQYESARLLLLGVIAASLLIAV
VAATWISLSISRGLRSAIGLAEAVSIGDLDQTVSAKTNDEIKDMVDSLNK
MTANLRETAAVADAVAGGDLTVEAKPLSDKDTLGMALKRMVEKLREVVGE
ANSAAENVSSGSQELSATAEELSQGATEQASSAEEASASMEEMAANIKQN
ADNASQTEKIARQSSLDAQASGEAVTRAVSAMRTIAEKITIVQEIARQTD
LLALNAAVEAARAGEHGRGFAVVASEVRKLAERSQTAAAEISTMSSQTVR
AAQEAGDMLGRLVPDIRKTAELVSEISAACREQDIGGDQINQAIQQLDKV
TQQNASASEEMSATSEELAAQSEQLQASIPYFRLDGAGSNSRPIATRPTT
RPAHAPTTGRKLAALSAPSPAGKTKTALARKVHSAPTETNGYALDLASGA
SDARDSEFERY
>Rru_A1788 Response regulator receiver domain protein (CheY)
MFPSIPRPPSKPPAVLVVEDDPIIGLDLCETFTDLGYVSIHNATSASQAL
SILETQPIALAVLDYVLERGATSLPVADTLLVRSIPYLFITGVSDYDGFG
KGIPFRHATAPRIEKPFVPTTLKATLLLLLRGRPHLLPAAGTTLE
>Rru_A0690 PAS/PAC Sensor Signal Transduction Histidine Kinase
MARATQDKTLMASPAPAGLPDGRMVRVREAGPDLAGVDEASFGFSGRPAA
LALAFVSPHLDFAEVLEGLRRLAGPTPLIGVSSFGGLCASCPGGGLYRSA
GPEAPGIILQVFSAEVIGTVSIQSVFLHNADIRGEQPSLERDTRVARIGA
DLAEIALPFALDARDSLALTFVDGLSACENYLMEAIYESARFPCLFVGGS
AAGTLEFRHTYLFDGQRVLEDHAVLVFIKLAPGKRYGILKSQNFVKSGVA
FSVVEADADRRTVTSVLDEATGAVRPFIEVLAETLGTLPEGVGDRLIGHT
FGIEVSKELFVRSVSRIDLAAGTVSFFCDVNRGDRLELLDATDFVEQTRR
DVVDFLRDKPPPLGVLLNDCILRRLNNEPALAGLNDLWLTETAGFSTFGE
LLGININQTLTAVAFFDDPDGAFHDSFVDGFPLHYASYCSYFTLTRLHRL
ESVARLRADMTTRLIHHLGASPDLAALIEGMVDSSPDVGAMLSGIRAAIA
RDLAAEERVRQAERQLKEAIETINDGFAFYDADDRLVICNAQYRTTFAGA
EDAIEPGNTFGDIVRDIAARGVFCQEGADLERFVAERLAEHRAPTGRGQL
HRVSDGHWIVSKEFRMPGGGVVATRTDVSELKRREEEVEALKRRYELILR
SAGDGIVGIDRDETIIFANQAAGAMLGRPAETLIGCPYRPVLSGGVEAPF
LPAFPLLGETGLTGEGVFLRDGGTDFIAEFMLAPIRETATFEGAVLVFRD
ISLRKHYEAGIVDQQRRLEEEVAERTFKLSAEISMRSRVENVLRDSQGRM
RAIAASLFEGVLLIDAHGIIVFANKSAYRWLETVDLVDHELDEVLKLRGT
GRLIDFAEGPFRRVIDSGETLIDDDAAFVVGSGHVVSVAYAASPLEEGGK
RRIAVLSFRSIDALKEAQREALQASRLASVGQLAAGIAHEINTPIQYIGD
NLRFIEGALGELGGVLADLRALAARGGLEAEADGCFAAKDIAYLMEELPL
AATQSLQGVDHVAHIVRSMKEFSHPGTTAKVATDINRAIDSTLTVSRNEW
KQLAQVETDLDDDLPLILCFAAEINQVLLNLIVNAAHAIETVRAEGQLGT
IRIATRGEAECIEIRITDSGPGVPPAIRDKIFDPFFTTKSVGKGTGQGLS
ICRDVVVTKHGGKMYLDTSVAPGACFVVRLPIGNAE
>Rru_A2272 TspO and MBR related proteins
MMGQTSGGCPTVHQAPTKRKRTMDQNSAITLAVFIGICMLTALSGAFFRP
GKWYQTIRKPSWNPPDKVFGPVWGILYIMIAVAGWLVWMTAPFSETMILP
MTIFGVQLVMNFLWSGLFFGAKRIDLALLEVSFLWISVIELILAFLPIHP
LAGYLLIPYALWVSFAAFLNLVIYRLNRKPTPVAEPAV
>Rru_A1439 Putative FecR
MAGEGGGPGDGALPEKFLKQAAIWHARLREDDRHRKAFALWLGEDPRKAE
AFRQTERLWAALEAPTAALATDGAALMVRRQRRPPIIWRRSAGRRVALAV
VLALGLVLAPRGQGLIDSLRADDVTAPGERRSLVLADGSVVALNTDSALA
VAMGGDHRRLRLFRGEAWFEVAHDARRPFVVETGDGTVTVTGTRFNLRID
EAGTRVSLSEGRVELSPAHAAGQVKILRPGEQAVVGKTAVGAIDTFDATA
VTGWRRGQIVFYDTALRQVVAELNRYRRGPILLARRDLADLRVSGVFDVS
DPEGVLAALTGTLPVRMTKVGGLLVVLR
>Rru_A2864 Predicted signal transduction protein containing EFhand domain
MSIDTSYSSTSMTDYALIRAQLFQKTDTDSSGGVSLEELTAKGQTLPTGK
NSQSTEDLFKQVDTDSSGEISLEELENFASASLASQTSGSLLQAQEETAT
TPATLKELFNTLDSDDDNTISLEEFEAGASTAQATATQASAAGGGGGGGG
GGGGGVSAASSSDEEEETYDSLDTNKDGVVSASERAAAAPPPRPVETGSG
ADNASDENASADQNASSTTAQAATTAQSAADDAVATEKATKITELLRRTL
TAYGNTTSNGAVTGSAGIFA
>Rru_A2652 conserved hypothetical protein
MGSRQETVADGDGVIEAVSARLADEYLRGAADDLVVMAAILHEMEADPDR
HDVLLPEIFRLSHDIKGQGGSFGYDLMSRIGNNLCRYLEILEVPLSAGQL
ARLSLYLETMRAVLGNRLRGDGGTRGAHLLAELALTTPSAA
>Rru_A1908 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor and Response Regulator Receiver modulation
MGRKQLNHIKCRENCSLVAKAGFRHRRVIIQGIQSAMVQDSDEILFVEEE
DPVAGSLPSDVSPWKVLVADDDPEVFTVTRLVLSGFVFAGRGVSLLYAGS
AAEATEILRQQSDIAVALLDVVMETEDAGLKLVKVIRDDLGNSHLRIVLR
TGQPGQAPEHDVVMRYDINDYRSKTELTDTKLITTLVSSLRSYQQIEALE
RSRAELREARDTLEIRVAERTRDLRESEARLRSILDASVFPILVLSEEGD
RVRFLNDHAGEALGWALLENTTSTLPDLWENPVDGARLLARTVQRGRVLD
CEFRLRGAGGEPFWALVSTIAMSYDGQPAVLLSFNDITVHKQREEAWQRL
ALTDPLTGLGNRRLLFDRGILEVARARRGCWPLSGLMIDLDHFKRINDTQ
GHAAGDAILRTLADTLRESLREIDVIARVGGEEFAILLPDTSLTAAHEVG
ERLRLSCQIPQPVGGPVTISVGISTLHPEDRGLGDMLSRADDALYRAKRN
GRDRVEIADDSEDNQDVSP
>Rru_A2769 Protein tyrosine phosphatase
MVDSLPSAVLFCCTMNSIRSPMAEGILKRFHGNRIYVDSAGVRAGGYIDG
FVVEVMEEIGIDLSGHRCKVFDELEDDSFDVIVSLSPKAQHRAVEMTRFM
SCEVLFWNTFDASLIDGNREVRLNAYRAVRDDLMRKILARFPVARAPSG
>Rru_A1407 CheD, stimulates methylation of MCP proteins
MVNSMPKPFLTPGTLYCGAAPAVISTVLGSCVAVCLIDRHNRAAGMNHFV
LPHNPAGEDSLRYGDVALDRLHARMGELGCETKDLRAKVFGGAAVLPFGA
TGDSVGTKNVKIAIEWLHAQGIPTLARRTGGENGLLIRFYTATGRVLVRT
IQSAITIDLGGISPAFDSRQSPFFQE
>Rru_A1622 Transcriptional Regulator, Crp/Fnr family
MRTMAENERSGSTAEDDEGGAVVRGSRIDAAWKGLPECRACGIRDLALFA
DLEEADFKLIHLPIEELSYGAGAVLYNAGDPARAVMSLRGGLVKLVQYLG
DGSQRIVRLVRPGDSIGLEATLQDSYEHTAVFLQPGMVCRIPVEVVRRLN
DETPRLHHQLITRWHRSLKQADDWLTGLSTGNARARVARLLLHLPREATA
DGTPICVLFSREDLGAMLGVTTETASRIIAEMKRSGVINERKFNQFACDD
DALRSLSGE
>Rru_A2758 Response regulator receiver domain protein (CheY)
MAEILIIEDMSGVRHALSGMLKRAGHSVVVAETGDQGLEHLRRRRFDLVI
TDMLMPGMDGTEVLFQLGAMPNHPPVIAISGGGAGISAETALKAAKLKAD
AFLQKPFEKAELLAAVDKVLAK
>Rru_A1277 Hpt Sensor Hybrid Histidine Kinase
MIALEKLLRENEDWLVRRVIDYAREQGYMAYTSTLEEAWRAGMVGLIDAF
LAAEADGTPAAPPRASLSYTEDPVAGYGIETANRHRARGIPLALFLGLLK
YNRRALLDLAARDPRPAADQAEIKNRIDNYFDRVELGLCAAWSRFEREQE
VGKLRERNRDLVNEKNKYLTAFESLTDPVFLINDAGGLENLNRSAGILIG
FGPSPGAGYYGSGIPPSAQRLVDDLLARFAQKAAEAEGAESDRIDYRMDT
VEGPRDFEVRRQAMLDVSERYSGQVLIFSDITAYKRASDRAEEANQAKST
FLATMSHEIRTPINGILGLSTLMRDELRDERLRHHADAIALSAEMLLSMV
NDVLDFTKIEAGILDLDPVDFSVEELLNGVFALVAPSAHRKGLEVYRSVS
PAVPERLHGDLAKLRQVLLNLFSNAVKFTHAGALSIHIDRLAEAPEGKVI
LHITVDDTGIGIAPSALKAIFEPFAQADGSISRRFGGTGMGLAINRRLAE
VMGGEVWAESREGEGSRFHVTALLEAARLPPPPPDTANGQPPAFLADRPL
SVLVVDDNDVNLMVAEGFLKRFGHDVVLARNGREARALLEHRRFDAALLD
INLPDANGLDLLAEVRRHEAAVGLRSMPIIVLSAHVMQADIARSARLDVR
FLGKPFNPERLRRMLRDLTRQDDDPRAGEGDGEGPVAEDFTAGPVLVDPA
VLRGHVEMLGATAAGKILAAFHGSAPRTLATLCSHVEAGRIAEAEDDAHR
LKSASANLGLECLRRRAAELEAACGQGESAAVGVLVEHLPTLFDSSLRDL
DRLWDEITAKG
>Rru_A2322 CheW protein
MSEITQAALDSGPDPSQVTGGAAAGALQAGNARQFVIFHVDNDLFAVPLS
EVQEIIRMPDVVCVPLSPAALEGLANLRGSVLPVIRLRHVFGMAPVVHDD
ATRVVVLDQGRPVGLVVDRVANVVSVEADHIEPSGAIGGTVDTDLLTGMI
KGDGDRAMVMILDAAKVVAREFQAIGSAPLAPSLGEAGRAEDGRVQAATD
GDDESQLVSFEVAGQEYALPIERVQEIVQIPGLITDVPNTPAHVLGVMTL
RNRLLPLVGLREMFGLPTLALTETNKIVVVSLEGGAGGSGRSVGVVMDSV
KEVLRVGHALIDPMPALLARTGNLGEIEAICRLQGGNRLVSILSADAMFN
SDEIRAVAANALGEEDAVADEETPGYLGTTDDEEQFVAFRLMNEEYGVPI
DSVQEIVRVPEELTRVPKTPDFIEGVVNLRGVVLPVVDQRRRFGLPGMER
NDRQRIMVYTIRGVRTGFIVDSVSEVIRIPASLIGPAPVLSDEQQRLIRR
VANIEKQKRMILLLDVEQLLDGKELAVVGSVIP
>Rru_A0603 Two component Transcriptional regulator, Winged helix family
MKSHVLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVV
ILDWMLPSLSGIEVCRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGAD
DYMSKPFSMPELLARVKALLRRAQPTSAKGTLSYSDVVMDLGAHRVTRGG
RYIHLGPTEFRLLQFLMQNPGAVFSREELLNAVWGPDIYVEPRTVDVHIR
RLRKALNGEASTDLIRTVRAAGYALDTNPVFSQ
>Rru_A0694 Response regulator receiver (CheY) and unknown domain protein
MTKVLIAEDELMIADMAEEVLVENGYEVCGIARTVGEAIDIGRRHHPDLA
LIDLRLAYGGFGTDVANELSALGRIGVLYASGNVAQVKERAITGEACLAK
PFRSQDLLRGLEIVSEMVTSGRASLPFPPGFFLLPSPLPAPQDTDLG
>Rru_A2332 Response regulator receiver domain protein (CheY)
MSAILIVDDVPVVRLVLARILKKAGHSVYEAGSGVEALDIVAHRPIEVLL
TDLWMPEGDGIALLGRIKSGHPRIARIAMSGGTPHTSLGASLAAAGAVEG
VIVLTKPIEKADLLDAIERSLAEAGR
>Rru_A2225 Two component Transcriptional regulator, Winged helix family
MSDPALPVAPVAPVTEEPPHILVVDDDTRILALLKRFLSERGFIVTAAAD
AAEARRQLAALRFDLLVVDVMMPGESGLELTRSIREDSDVPILILTAMDQ
PDDRVSGLESGADDYLAKPFDPRELVLRVNGILRRLRQAPDLPPAAPPEG
PLPLGACVFDPHRQELLRGDEVVRLTTAETALLSTLAARAGEAISREDLA
ELTGVAGNPRAIDVQVTRLRKKIEADPRVPRHLQTVRGRGYMLRPG
>Rru_A1272 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain
MKRVPWVVGGLILIMAYNAALGTLAYWQRRDIIDESLREAVVVADILVRE
VEANLDRIDRTLSGLTEVLRAYPSAIDVHDPFTHRLLLRRHAITPSLAAL
FLIGGDGRLRNASLTDKVSEIDVSGEDYFAFHLSNVDDEFFIGAVTTNRL
DKSWVIPVSRAVRDSFGRLTGVVAATITTDSIDQMIHSHQLSEGFAVTIT
QRDAGMIGCLGFTRCWGEGAPHRGDEGLAESGGSGEEVHYLPNGPGVGAF
LRGPTYGVEVTVQASDRTLLQPWREKLAFILVLQVFGTLGLGFGITSLYY
QMHHRRVSLLDLERANASLESKVAERTRQLAEGEERMRGFIMAARDAVVI
IDQKGIISEFNPSATELFGYDVEEVRGQSVNMLMPATYARDHDGHLRKGK
PSGQRAIGRGREMIGRRKNGSEFPIELTVGTQSFDGTRVHIGVIRDITER
KATEETLRRLANIDGLTGVLNRRSFTEESELLLSLANRHGRRLSMMIVDA
DHFKGVNDTYGHDAGDRVLKALTGEIAGVLRKTDLLGRIGGEEFAILLPE
TDQEGAEGLAWRVVLAIRALEVPLPEGGVLKVTVSVGVSCRNTEAATFDW
MLKEADTALYAAKHGGRDRVACFGQTQSVARS
>Rru_A1856 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
MAMMRQFELVERVKAYDPNANEDLLNRAYVYAMKMHGSQLRASGDPYFSH
PIDVAGILTRYKLDCASIITALLHDTIEDTEATLEDVRQLFGNDVARLVD
GVTKLTRIQISSDHAKQAENFRKLLLAMSEDIRVLMVKLADRLHNMRTLH
FIRKPEKRARIALETMEIYAPLAERIGMAEIKEELEDLAFRELYPDAKEG
IEARLTFLREQGGTLVPKVIDQLKAALAEHGLTAEITGREKTPYSIWQKM
KRKNISFEQLSDIMAFRITVENLEQCYQALGIIHASYPMIPDRFKDYIST
PKRNGYQSIHTAVIGPERLRIEIQIRTAEMHSVAELGVAAHWSYKQGSPV
MDGRQYRWIRELLEILEHTSSPEEFLEHTKLEMFSDQVFCFTPKGDLIGL
PSGATPVDFAYAVHTQVGDRCVSAKVNGRLVPLRTPLHNGDQVEIATSKA
QTPSPEWERFVVTGKARAQIRKFVRSQRRDQYLILGRQLLERAFKAENYE
MTEKGLDGVLKKFRADSVEDLIVDVGEGQLPAREVVQAVYPGLKMVPKLA
AVVTLGRTKKPRASDDHSFKIKGMIPGMALHFAKCCHSLPGDRIVGIVTT
GKGITIHTIDCDQLEQFSDEPERWLDLAWDAEADSQVHVGRVNVVVANEP
GSLGALTTVIAKNLGNITNLKITNRQQDFFDMIVDVEVKDVRHLTNIIAA
LRATSAINYVERARH
>Rru_A3665 chemotaxis sensory transducer
MTEGCSAVRIKDLSISIRLRGAFLVLIIGTIIVAWATLGTFATVVQTNNW
TNHTREVQTAVEKMRLSQIDQETGVRGFLISGEESFLEPYRANQAVFREL
LQRAKTLTADNPEQQRRFDDIAAQAEIWRTRVAEREIALMNNAETIEAAR
ALEASGAGKVPMDAIRRLSGEIAGAEEALLKQRTAEMEEALALGRNTMIV
GGVVSVVLAVLLGWQLTRGIVQPVRLLTGVMGELSAGGRGVAIPETDRGD
EIGQMAKAVEIFKAGLIEADRLAAEEATQRAARESRVTALETLVGGFQDR
IGGLVGKLTESSSGLETTARAMSEAARATDTQAATASDAVGSASMGVRTV
AAAAEELSASISEISGKVQQSSEVTQKAMARAAETDKMVGRLAEGADRIG
EVVSLINAIASQTNLLALNATIEAARAGDAGKGFAVVAGEVKTLANQTAR
ATEEIGAQIGRIQEATRETIQAIKEISGTIGEINGIVMSVASAVEEQSAA
TAEIARTVQRVSTNTDEVTTNVDGVSRTAKATDSAAADVLRASGDLTTVS
GELGGEIDRFVGGVRQL
>Rru_A2542 circadian clock protein KaiC
MSGPAGIRKSRTGIAGFDELTLGGLPTGRPTLVCGSAGCGKTLFAATFLV
HGVKDFDEPGVFVSFEERPVDIIDNVASLGFHLDDLIEEGRVVIEHIAVD
PSEVAEIGDYDLEGLFLRLELAIDTIGAKRVVLDTIESLFSAFSNPAILR
AEIRRLFDWLKEKGMTTVITGERGEGSLTRQGLEEYVSDCVLLLDHRVEN
QISTRRLRIVKYRGTNHGTNEYPFLIDEDGFSVLPVSALGLSHKIYDERI
STGVADLDAMLSGGGFHRGSSILVSGVAGSGKSSLAASFVDATCRAGESV
IYFSFEESHEQATRNMKSIGIDLGQWMASGQLKYIATRPTFYSLEMHLAI
VLREVIKLKPSLVILDPISAFTESGERLEVQGMLLRIVDFLKSRGVTGVF
THLMQSGDNLIKTDAGLSSLMDAWILLLNREVNGEFNRELYLLKARGMEH
SNQVREFVMSRSGISLLPPYIGEGGALTGSARKIEEARQARLETERRIEA
ARLKREIEQRHRRNRAQIDLLQAESAADQIELDTLKKREEDYLRQIEQDK
RDLEKSRRVS
>Rru_A1399 CheA Signal Transduction Histidine Kinases (STHK)
MTPMDPSETFRQEAQELLEQLEQALLDLEHAPDDGDLIDSAFRALHTIKG
SGSMFGFDAVAAFTHHVETAFDLVRKGKVTPSRELIAVALAAKDRMRLLI
EQPETPESAEGDAILRDLKAIVDASDLPSAGEGGDAPVAAREQPAEITWR
IRFRLARDAMAMGTNPLLLLDELRTLGSATIVALTGEVPSLEVLVPSDCH
LAWDVMLTTSQPRTAIEDVFMFVIDDMELSIDLLESGEEDRRIGEILVER
GDVAQEAVDTAVSRQLPLGTLLVESGNLSPDKLTSALAEQQHLRTETKVV
AKGADSIRVPAERLDELMDRVGELVIAQSRLTQVAASINDMQVKAIAEEI
ERLAHELRDTTMGVRMVPISSLFGRFRRLVHDLAHDLGKQIELTTFGEET
ELDKTVIERLNDPLIHLIRNSIDHGLETPEGRKEAGKPPAGRITLSARHS
GAEVLVSIIDDGRGLDRARIQARAEEQGLLAPGVKLSDNDLFQVIFQAGF
STAKVVTSLSGRGVGMDVVKRTIEGLRGKIDIASTPGKGTELTLRLPLTL
AIIDGLLVRVGKARYVLPLSAVEECVELSAEEDGRSRGRSFLNIRGDLVP
FLRLRELFQVSAPADPYQKVVIVSSGEFRVGLVVDQVIGNHQTVIKSLSK
LHADVETFSGATILGDGAVALILDIGHLVKLGLTYESQFMAAG
>Rru_A0204 BolA-like protein
MTLAAPSSATPIRDRLESKLRAGLAPETLIIRDDSRKHAGHGDRLAALAP
ADQGGHAPIDGAGETHFSLDIVSARFSGMSRLERQRLVNALVAEELRERV
HALSLRCRSPEEQA
>Rru_A1431 Transcriptional Regulator, Crp/Fnr family
MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDG
RLRVYLVGEEREISLFYLTSGDMFCMHSGCLVEATERTEVRFADIRTFEQ
KLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIAGFFIDHANTT
GRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGH
YTIPNLVRLKAAADGDRDDDDD
>Rru_A0102 Putative diguanylate cyclase (GGDEF domain)
MGDIEGINIQSMASEIKKLRHKIETLEQQNSDLEIALTTAVEHGDAIESE
LFSTNDRLRGEVRERVIAERRLSKVLTVVSQQKDDLEVLVQTITEHSDEI
DTQWLSRYSEVEALARLDPLTSIANRRMLDSALEQEWTRSLRSGSPLSVA
MCDLDLFKAYNDRYGHNRGDQVLIAFAEILRGCSRRPPDLPARVGGEEFL
ILFPETDLAGARQVAEAIRLALWTLAIPHADSPHGRVTVSIGLACVFPRP
EGDPADLIAQADFRLYEAKAHNRNTVRA
>Rru_A0632 chemotaxis sensory transducer
MVCRKKPSLLRERLPYPFQVISDKIMILDRLPVSRKLFALVLVSLLGIGA
TAILALSQVHDVMMEDRRAKVRAIVDLAFSQTADLADRAARGAITSEAAQ
AGAIEILRRARYDGGEYLFIIDTKGRSVMHPLAPEMEGKDMSGVKDAKGT
AMFAEMARLAVSQGSGFFAYEWQRGAQGTASPKISYVRRLPQWDWVIGSG
IYIDDVEAAFTRQALIFAAVVAAVVAVLLGLSLVIGRGIAGPLVAMTGRM
RKMASGDLETAIPGEATADQRRDEVGEMAGALVVFRETLRDAKRLAEEHR
HEEEQKHIRRQQVDEQIRAFEMTVVRLLDGLVSADQSVRSTTTRLVDGAR
DTMSEANEVAASAEHASANVETVASAAEELSASIQEIARQVEQSSGVARR
AVEETGEATKGIAELEERVGQITDIVKLISDIASQTNLLALNATIEAARA
GDAGKGFAVVAEEVKNLANQTQKATKDITGRIADVEEATTRSVEAIRDVS
KVIGEIHEISASISAAVEEQGAATREIARNVDEAATGTNRVSSAIGRVRA
AAEEANSEAGDMERASRDLGHQAEVLKGEVAEFLQGIRLGDGEDHALVTW
SDDLATGDAHVDEDHRKLMALVNSVYGHVKQGEAGAALEASFGELKRYSI
EHFAEEEAFMATVNFPQAETHRRQHQHFLGRSDALFEAYRRGADTAAVEL
MGLLGSWWETHIRIYDTELAHFVRRRQATPTLRRSA
>Rru_A1159 Two component Transcriptional regulator, Winged helix family
MAQKILVVDDEPQIRKFMRISLGANGYEVLEAETAEQGVMLATGMAPDLV
VLDLGLPDLDGQDAISMIRTASAVPIIVLSVRSGETDKVEALDRGANDYV
VKPFGIGELMARIRAALRPRAGSGEEGAGEVLTIGALVLDFARRVVTRGG
DEVRLSRKEYDLLRLLAEKADHVLTHRQILRDIWGPAHVEDTAYLRVYVN
QLRQKLEANPSEPRLIVTEPGVGYRLKRGE
>Rru_A2755 hypothetical protein
MSPMGDKNDGADFSMICSASSIGERLGGGAATDELARLAALHAYRVLDTL
PEVAFDRVTRLAALILDVPIALISLVDRDRQWFKSRRGVDVDEMPRAIAF
CDHAIRGTDILVVNDPTSALPR
>Rru_A0523 Two component CheB methylesterase
MTITTSEATSHTLGGPIRVMVVDDSAVVRGLETRMLEEDPAIQVVASVGN
GQMAVQALDRHDIEVVILDIEMPVMDGLTALPELLRKSPNLKVIMASTLT
LRNAEVTLKALQMGASECLAKPTTSREISGGTDFRHDLVEKVKALGGARR
RALGRAAPTARAGGAVVERKVGALPSLMAQRAQQPISLRPAAEERPDIIA
IGSSTGGPQALFTVFGDMRKGGWPSQPIVVTQHMPATFTTILAGHIERVA
GVPTAEAKDGDPIRGGHIYIAPGDYHMVVETRGTEKILRLNQDPPESFCR
PAVDPLFRSVAKAYGRRVLAVVLTGMGADGSKGGKIIAESGGTVIAQDEP
SSVVWGMPGATAQIGACSAVLPLKDIAAYVLRSANKR
>Rru_A1107 hypothetical protein
MAQEPEVAATASGGGEPPVLRDRYEIDPAKPLPGLDMPNAHAFRVTDKRN
GQRALYALVCDGPLPPRTSAMRTLRGVSAPGLVPLVEWGVVDWPPIDGRC
VAVVYERPLGGRLMKSEDEVFQPVPDQSFAKIIWRPLIAGLTELQGRSIA
HRAIRPTNLYWMDREQTRIALGDCTTSPPAYDQPVGCETIESGMASREGR
GGGYYPDDMYALGATLVIASVGNDPLAGVAPEAIVSAKIANGSYSTVVGD
ERVPLGVIELVRGLLVDDQEQRWSLETIELWTNGRRMNPMQTRQEKRAQR
PFVFRGAEYYTRRALAHALSQDWETGVQPIMEGKVETWLRRGLELGDLAD
SVGNVVRAANVTAKDVGPVRDMAVAAVLTLMDPRAPIRYGKVRVHMEAFG
TAMACTLAMRGDIRPYIDLIQRDITKTWIAAQEAFSSDFGRFDAEFKDLR
TYLVQTSKGGGIERCLYEMNESLPCRSALLRNQCVLEIGDLLPALEWVAA
KADQKQSPADRHVVAFVAARYPKDTMGQIHALNDEDPRKAALGVLSLLAV
LQWKLGPESLPGLAAWLGSQMAPAINSYHSRERRKRIEKELPKVVRKGSL
PDLYFLLDDSKERQLDLDGFLAARQQYAQAAQQVAALESGNYRVSETSER
LGQQTAASVSVAIAIVTIVFVSISRLI
>Rru_A0993 Transcriptional Regulator, NifA, Fis Family
MPDTAVAGPLFRLPPSPAEDSSLPLLTLYEVSKILGSTLDLEHSLHDVLN
VLASYMQMRRGVVTLKDAQRQLEVVAVSGMTLRNAVEGEARYPLAVAQEV
VSTAMPMIVPSMAADPRFAAFAAEADGLDDEVQSMICVPIKGGVKPFGSL
SIERHRDRGTRFKFEHDVRFLTMVATLIAQTVSLERRVVGDRDRLIEEKA
RLEKALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSRATVLLRGE
SGTGKELIAQAIHYLSPRSDKPFIKVNCAALPETLLESELFGHEKGAFTG
ATTERKGRFEMASGGTLFLDEIGEITVHFQAKLLRVLQEGEFERVGGGKT
IKVDVRLVAATNKDLEDAVTRGEFRADLYYRINVVPIFLPALRERREDVP
LLAQFFLTKFNEENGRSLRFSEGALTAMGGCNFPGNVRELENCVCRAATL
AQDEVIQELGLSCHNDKCLSASLWQRRGSGRAIGGLAPVTEQNDPDTTSV
AWEGDLRPAAPARAGTPPGRGYAGPGESADSPSSPSAPPPAAAPAAEDGE
DESDAGQRERIVHAMEKAGWVQAKAARLLGMTPRQIGYALKKHDIPLKRM
>Rru_A3756 PAS/PAC Sensor Hybrid Histidine Kinase
MLPDSPQPDPPLTVQDLLDSLDDDLMVVDGAGRVISTGRRGAARLGLTDK
AQALGCDPFALLPPDVATGRRSALARVVACCVAETLEDRHDGHWWSVRMI
PLIERAAAGRPESRAEDRLARAVILRIRDVTGTRALALALGDSEERFRGT
FDAAGHGMALIDTEGHFRMVNPMLRALLGIDAAHPGDLAAVVFPGDIKIA
IDMIRRLAAEIEPSLTVRLRFVGADGATVWGLVSATLQRPRVGERAYVVM
HLRDITQEQLAEGRLRAAKEEADRASRAKTRFLAAASHDLRQPLQALNMF
ISVLAGRENDPWRAAIIGKIEKTADALTALLDTLLDISKLDAGLMRCEPR
DVMIGGLLARLSEEFQPLAVSRGLALRAVASSAAVHADPALVEIVLRNFL
GNALRYTPSGRVLVGARRRGDGVEIQVLDTGPGIAPEQHGLIFEDFHQVE
NPAREKGEGLGLGLAIVKRVALLLGARVGVRSLPGRGSCFTIRLPGPQGR
AIERPEDGLLGVSAQAARGLTVLLIDDDPAVLDGLTLVLEAWDCEVLAFA
DLDGLREGLGSGGFLAAPDVILSDFRLGKGENGVEAVRLVRDHFAQAVPA
LLLTGDTAPQRLREADASGLPLLHKPVKPEVLRGALADVIAGGLTLDDGL
PGGEGADPRAVGPPGGGAGGGP
>Rru_A2232 Two Component Transcriptional Regulator, LuxR family
MRVMIVDDHELFRNGLRFQLAAIDSTLDVVEADTFEDCIRLATEDGPVSK
VFLDLMMPDMDWREALSALRRLPDPPDVVVLSGADDVAMIRSAIDHGACG
YIPKSLKGDVLESALRLILAGGFYITPEVYRGPRVYDGAVRIMGVGGDDV
PLTPRQKEVLAHIDAGLSNRQIAQAMTLSEATVKMHIGRLFKALGAQSRT
DALAVARRKGML
>Rru_A1385 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family
MLAPAQTVLIVDDDEAIRQMLSAFLSKEGLRVVTARDGLEAIEVFRLQRT
DVVLLDIRMPRMNGLEAAKAILEMDRGTAVILMTAFAEVCTAVQAIKDGA
FDYVIKPFDLEEIRLLVRRALEIRSMRADIVSLRRELSERYGAEGILTDN
PKMMDLRQTIAKVARSQATVLIQGESGTGKELVAASVHYGSPRATGPFIR
VNCAAIPEGLLESEFFGHEKGAFTGAATRRRGRFEQAEHGTLFLDEIGEI
SPALQVKLLRVLQEREYERVGGSEPIPADVRIVAATNRDLEAMIREGTFR
QDLFFRLNVVALKTIPLRDRPEDIRLLADHFLGRFAADNNVVIRGFDPAA
LDCMLAYPWPGNVRELVNAVERAVVMSTGNVILRDDLPENIICGERAAFV
SELLPDGEAIRPLREMASEFETRVIRLALARNGGNRARTAIQLGISRRAL
LYKLQEYAIT
>Rru_A2366 chemotaxis sensory transducer
MRSLSLRSQILLIPCLAAGAIVLVALFAGTLIHDRIEETHRVQIKSVTES
TVKVIASLHAQVAAGALAEDQAQRLARDAVRAIRFAGDEYFYIYAYDGKL
LAHAVRPDLEGTYTLKDTRDAKGVKIVEDLIEIAKRGGGFMPFVWPKPGQ
TEPVAKLGYAESFAPWGWMVGTGVYMDDVETEVARTLWEIAIGGFCALVF
IAIIGLGVTRSIGRRVRGQAERMGAMAEGDLTTAVPADSANDELAAMART
LEVFRHRLIENRDMAEAREAEQRRRAEEAERIGALARAFDAATETTLQVV
SGAALDLERDAGALSLSAENIGERSVTVSSAAEQASVNVQTVAASTEELT
ASINEIARQVATSAQVAMDAVTETRKTSAHIHGLADAAQRIGAVVELITD
IASQTNLLALNATIEAARAGDAGKGFAVVAGEVKSLANQTARATGEIGEQ
IAAIQQATTVAVDAIEAISTVIATIGDSTTTIATAVEQQGMATREITSNV
HQAAAGTALVSQSIGAIAETIATTRQASASVLNAAGQLRQESTSLHEKVI
GFLAGVRGQA
>Rru_A0990 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
MEPSIQDLRSSASATDPKRPRRLRLGIGTHLWIAFLSIGALSTVVTLIAF
NSYNQATATFKAITHDRLPAIVAVAKLADDSNALLTTLPHVVLVDSAGTL
SEHWRDVAEAEERLNRSIAAVEALPAPNTRLTDFSDLSGRISAQLQILLS
ALQEARGAQRDILDLATQMDLLHQKVRLLMADAGTQGRIPPDSLYLATRL
LSLLGEVLASDDANDIAVNAGRIDQSLQRLQASISAKPNDAIAEMNNTLI
AIGSGPNGLVARKRLALRAGAVAKDRLRDVRALSRQIGERVQGMLGDTMI
AVDADRQATEKQLHLSKILLAATSATGLLGAILIAWLYVGRAIVARLDRL
SYGMREIADGHLKGSLPIGGKDEIGEMARAVSVFRDAMERIDYLASNDSL
TGLLNRHGFLAGGERLLARGQRRGWLISINLRRFKDVNQMFGHQTGDTIL
GEVADRLRRLAGPEDLVARLGGDDFALLALDPDDEGRALALCRNILAALR
PAIVIGHASLDIEACIGFAGWPEDAEDQGSLLRRAELAMQQAKNDPGDPI
CRYRSALSEDLEVRSQVRKDLRAGIIAGELRLLYQPKVDLRSGRVVGMEA
LVRWNHPRHGLIPPARFIPVAETSGLIIPLGEWVLEECCRQLRLWRDDGM
SDLKGSVNMSPVQVFSQDVAALVAEALHTTGLPAEALEIEITEGVFVHDE
QRARRRLEGLRALGVGLAIDDFGTGYSALAYLKRLPATSLKIDQSFIREV
TDQPEQARLCRAIIGVGHDFGLTVVAEGIETAEHLAFLRAEGCDFGQGYY
FAKPLEAQDFAKVLRDQPWLTGDAAQ
>Rru_A1109 chemotaxis sensory transducer
MLRNLSILNRLLGLGALVLLTLALVVFIGLSATTRARMDDRKATLHMLSE
TAISTMGQYKARADAGELSLAEARDQALKALGKITYDNGNYFFAADEKGV
LLVHPTRPKEIGMNMLEKGDPGLKSLYTQLISLATTTGATGGFFESMGRR
PGSTENNTPKLFIAIRDPSFGALMATGLFIDDIRAENARQAWTVGLLAAA
AALCLFAIGFLVVRSITRPLGTVILGLETLTKGDYDHHLDVAQSRSEIGL
LARSFEHLRELLQGAERLRRERDQEAERIAGERRSEMLALALHFEAEVGD
LVTGVTEASRTLKASAAQMTDDASQTLQQSSAVARSSRQSSSNTQTVAAA
TEELSSSIQEISRQAGQSSALAQSAVSRVNETSTTVDSLNAAAQRVGDVV
RLISDIASQTNLLALNATIEAARAGAAGKGFAVVAGEVKTLANQTSKATE
DIARHIEEIQSVTRSTVSATGDIGTSVTTLCEVAGMIAAAVEQQNAATKE
ISHNVHLAETASQEVTSAIGAVETAARNSGQTAADVLTSADALSAQSARL
QGAVSAFLSHIRSTQG
>Rru_A2484 chemotaxis sensory transducer
MLANIRIAGKIGIVIAIMAVAAIIISTVGFMGMRTLGEAARQIDGYGDMI
KTGARMNQNLLTMSRAEYRMAANPAEFEDAYGFFSKNKAQFEERITTLEG
MLPASHLSEIATLRENFVNYLAAAEKTIATARANQGATIGEAQRQIYDAV
TVSRAISNPLLDSTLALSDDLDDEGTKVGDAADATFQTLTRWMFGVAFGG
IVLGVIAGLLIARRGMVQPIGSLVGSLQALTAGDLERAIDGTERKDEVGD
IARSALIFRDNARKAQELREAQAAEQVARAKRSAAIESLTRDFDHAVSDV
LGVVAGACAEMETTAGGLSATADQTNIQASAVATATEQASASVQTVATAA
EELSASISEIGRRMEQSSHVAQIASQEAAQTNATVQSLADTSARIGAVIG
LITDIANQTNLLALNATIEAARAGEAGKGFAVVAGEVKHLASQTAKATED
IGTQIGAVQEATEGAVKAIASIVRRIEEINTISAAIAAAVEEQSAATAEI
ARNVQQAAAGTQEVSDTIVGVSSSAGETGNASQQVLSAAQALSKEAVALK
GLVERFLGGVRAA
>Rru_A1402 CheW protein
MADQKDVSGETQFVTLGIDREIFAVPVEAVVEILDIRPMFRIPETPAYFA
GLIDVRGRGVPVIDLRLKLGLTAATVTENTRILVLDIAVGGRQLVLGLIA
DKVFEVMGLDVGQLEAPPDIGVAWRSEYIRGIGRRGNDFVILFNLPKLFS
TEEVALLAPSLLTQASTAAEPADLSPGSV
>Rru_A3285 Response regulator receiver domain protein (CheY)
MPATAVSQAVVHQLPFLRRYARALCGDQIAGDEVVKAVLEVIVADPRVIP
DVTDLRVRLYQLFHKVWMSAGSLSAPAEDAETDIQRRVSQLPAEDRQALL
LVAMEGFTLAEAAMVLGRDDSQTAALVDQARLAMAQQESTRVLVIEDEPI
IGLDIANIVESMGHRVVGIAATRAEAEAMALEKKPGLVLADIQLADGSSG
IDAARSILAGADIPIVFITAYPERLLTGQRPEPTYLVTKPFAVDTVKVTI
AQALFFRQAQPVAAE
>Rru_A1436 Histidine Kinase
MTTQALSPGRASRWPRLGWRHWAALALALLVLFGLDRLSQAGAQSWTLSH
ARDAARAAWTSRAAVLQSEIEKQRSLPLVLASDPDLGRALESRDPAHIAA
LNEKFETLAAGTRAGVIYLLDLGGVAIAASNWRAADSFVGSDYGFRPYFR
LALDERATEHFALGTVSHRPGLYIARRIDGARGPLGVLVVKVEFETIEAQ
WQGFAEPTFVTDAQGVVIITSLPSWRFLAEIPKSAEESARIRASLPFEKA
PLTPLPIRRADAVGTVVVALPTSRADRANERPFVLEAGPQPATAWTLHVL
APARVPAAVAAAARTFALMLSTGVICGSGLWYARSLRRARERGRQRAARI
ELEERVSERTAELRSANDRLLTEIDERRRAEAALQDLQDELVQARKLAVL
GQIAASVAHEINQPVAAIRTFADNARIFLARAQPEGADHNLQTIATLTER
IGAITGELRAFARKSPSRVEPVSLRSAIDGALLLVGHRLRQQAVTLGVDI
AEGDLTVAAERVRLEQVLVNLLQNAVEALAGRRDGTIRIAAIADRARVTV
TVCDNGPGLSPDVVGSLFMPFTTTKPTGLGLGLVIAKDIIAEFGGSFTGE
NAASGGARFTITLARPQ
>Rru_A0745 PTSINtr with GAF domain, PtsP
MPERERDARSLLGRLRDIMAGGGSPQVRLDLVTALIARGLGTDVCSCYVL
RAGEVLELFATEGLSQAAVHKTRLRVGEGLIGEVAATGRALTVADAWSHP
NFAYRPETGEDLFQSLMGVPMIRGGRVIGVLAVQNRESRDYEEFEQEILE
TVAMVLAEMLAGADLVGKDELGPVAGNAVLPMRLEGDRLNGGIGLGTAVY
HRPEVMVHRLVGDDPETEMERLRTALSEMRQSIDSMLALHRDVPGEYHDV
LETFRMFAEDAGWIGRISEHIQTGLSAEGAVRKVDDDMRLRMSQVSDPYI
RERLHDLEDLANRLLRHLTGDGSTAALSDLPEHVVLICRSLGPAELLDYD
PSRLRGVIMEEGSSGMHAVIVAKALDIPVIGRVPDVFQRVAPLDQVVVDG
DHGHVFVRPGEDVREAFLNGVLARKQRRAFYQSFRDQPAVSRDGYRIKLM
INAGLLFDMEGLVESGADGVGLYRTEIPFMARPSLPSVETQTELYDKVLE
LAGDKPVTFRTLDVGGDKLLPYWNRAPEDNPAMGWRSIRITLDRPAILRE
QLRALIRASGQRELRVMFPMVANVAEFRAARKVLMAELAREAARGTPPPR
RVRVGTMLEVPSLIWQLPALLKDGVDFISVGSNDLMQFTFAADRANSRLA
GRYDPLSPAALSILHRVVTLCDAAAVPLSLCGEMASRPLDAMALVALGFR
FLSVAAPGVGPVKQMLLSTNIDQVRPYVETLLDLPDASVRENLRSFALDH
GISLS
>Rru_A1884 Periplasmic Sensor Signal Transduction Histidine Kinase
MEGAEAMRPRQRWIPVVVFLTLSVVLTAGLVSVDAFDLFYDFSRAHESWE
ADEIALALFAAIFGGFIAFFFEVWRVNRSLTLSLAALEEAKREAETARHE
AEAAHAAKNHFLSHLNQELRTPLNAISGYAEKIAQLAETRPLPEQVTQGV
GQIRRASDELRQLIDELLDLSAVGDGTLSLDLRPVDILGFFALCARDLQT
LFSRRHSTLDLDLAGIGGKAMIDEARLKQILYAVLISAIRQTPEGVVDLS
ASTTDQPSPGLSKSQREPRVLHVTVTSDSLSRSLTRIADPFAPFQSGGDE
SMGIGLGLTLSRSLAQRMGGDLVVARVSGGRNGYHIRIPLPPAVDG
>Rru_A0009 PTS IIA-like nitrogen-regulatory protein PtsN
MEITDLITPDSIIANLRVSSKKQALQELAKRAAELTGQHERAIFDVLLER
ERLGTTGVGNGIAIPHGKLASLSGLHGLFARLEEPIDFDSIDDQPVDLVF
LLLAPEAAGADHLKALARVSRLLRDRSICEKLRGTSDPEALYTLLAHSQA
SQAA
>Rru_A2108 Multi-sensor Hybrid Histidine Kinase
MNRDRLPTFLSDGASRGVLASGVAFGLIITLLVGFWGWISYRDSLARAAS
VTEGYTLTYKAFSEQVFGRIAGVVDEVDHRFESSADDQAKLGHYVREQAI
LFPVLSDVVILDARGRVRLAGKAPPRLTDRVFPMADRLLGGRDEPGMVVT
PLFRSDTDGGPWVFAVGRTLVGADGTVAGAVAAVIDQKRFNDSFAVLLEN
DMATVVLALADGKILARAPEAGFHPGAALLSVAERQGVVVERRSGITRSS
LDGVMRIFNERRLSGYPLLVIGTIAKSAALSDWSGWMVLGGLLVATVLIA
DGWVTIQLMRQLGRRRTAEARLSLQNAVLTSQRETSPDGILVADLSWRLI
SWNQRFLDIWRVSDDLMRQADGRTLLTQIEPLLEDAPVFRADVVDQMTQA
ASQFLAVMSHEIRTPMTGILGMGDLLLTSGLNEEQEKYGRTLMRSARTLL
GLLDDVLDFSKIEAGQLELEVVDFSPVEVLQDVIGLFLPKASERGLVLSS
RLPEGPPPILRGDPTRLRQVLFNLVGNAVKFTARGGVEVRMDVGEAVGDQ
IPLTLSIIDSGVGMDARQRARLFNPFTQADVSTTRRFGGTGLGLTICKRL
VEMMGGTIEIDSTLGEGSTFRVRVTLTRGDASKVVSLEGHGLGHPLDLPG
PRPAGRRILLVEDNDTNRLLIATVLERSGHNVDTAADGRQGVDAVSAATE
PYDLILMDMQMPEMDGPDATRAIRALSGPAAHTPIVALTADVRAEDRDRY
LASGLDDLLTKPVDWTRLREVIERLTGPGQTRPQVRPGGDEVLKRAAWEE
EPAFDGSVLASLAEQLGTNRLRPLITSAMANLSRHFDLLEKTMANGSAQD
VRRSAHALKGMAGQFGARRAQALSLAIEEEADRPQAARALLPFLRIAIEG
ARGGLEALVDPTTAPGEKRGREAR
>Rru_A3213 PAS/PAC Sensor Signal Transduction Histidine Kinase
MSAIDGPGLDSRLIDIFDHLDEGVALYGPDHRLIRFNRPFASLVETAGGR
PAPGQRMVEILRDLVAPDTGEENRADSGPDDDGRGTEDDAAERLEGALLG
TPTEIRLGRDRWGLVHGHRLKDGALFCVLRDITASKAGAARIAESNRRIR
EAESRLERALESIDQGFYLCDASDTVVLRNAKLAHLLPGLPPLEPGTTYG
AMMAAACDNGAIPAATRHRTRWLSLCMARHHLPRGAWDFENGRGRWVRVS
ESLTPEGGRVGLLTDITETRKASEQVRQREQRLDGIMKTVVDGIVVIDEN
GIIESFNPAAERLFGYRAEEVVGASINRLIPGGESGRHDRSLRRYLQTGQ
AGIIGRGREELALRRDGSLLPVELAISELRLDDRRIFTGLVRDISARKEA
DRQLRENEERYALAIAGTHEAIVDWDIDSDTITYSDRITAIVGLDPKDLD
RSASWIALIHPDHRKDYLTRMDALLRGESSFFSCDFRLAGRAGAEERWLR
HRATALRRPDGQIYRLSGAVGDITDSRRGEDRLREAKEAAEFANRAKSEF
LTNMSHELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLL
DVINDILDVSRIEAGRATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKI
TLDPALPPLLGEARRLKQVLINLLGNAIKFTPAGGEIALSARGDEDKGQM
VIEVSDSGIGMAPEDIPLALEPFRQIDGQLARRYEGTGLGLPLSKAFVEL
HGGTLRVDSTPGAGTRITVRLPAGAVES
>Rru_A1450 Transcriptional Regulator, ArsR family
MLETFETVAKAVADPNRVRILKLLESGELCVCQITAVLDLAAATVSKHLS
LLKAAGLLQQRREGKWAYYRLADRALNPYAPAFLGLIGATLADDPTLTED
ARILSKVNALPLQVLCDQGRAALDLTRPTSPAPSCCGTPMMTETSFNVLF
LCTGNSARSILAESILNREGAGKFRAYSAGSHPKGQIDPTVLALLKKTNH
PTETLRSKSWDEFAAPGAPTLDFVFTVCDNAAGEVCPIWPGQPMTAHWGV
PDPAGFVGSEAEKAAFCGEVMRLLRTRISIFAALPIASLDRLSLQRRLKE
IGKVALESRETRESGVL
>Rru_A1406 Two component CheB methylesterase
MPRKIRVLIVDDSASVRQTMTEILESDPGIEVIGTAPDPYVAARRIQQEV
PDVITLDVEMPRMDGITFLRKIMAQRPIPVVVCSSLTETDSETASQAWEA
GAVEIILKPRVGTAQFLLESKIHICDVVKAAAGARLRSMPAAGRANRPRV
PEKKLTADAVLPPPVAGRNAMARTTESVICIGASTGGTESLREVLEALPA
ASPAIVIVQHMPEKFTEAFARRLDSLCDMEVKEAVDGDTVMRGRVLIAPG
NHHMLLQRSGARYYVSVKDGPLVSRHRPSVDVLFRSAASHAGSNAVGIIM
TGMGDDGARGLLEMRKAGAYTIAQDEATSVVFGMPKEAIALGAADKILPL
EMLAMEILRAGNR
>Rru_A1071 Adenylate/Guanylate Cyclase
MASMTHYEVYLMELRGDWSLQQRYVSSERQEAIDEAKRLEAELNLPTKVV
RELFNPQSGMAEEQVVYISPKARELRERAMRRAGPHAAGGGPDSWVSSRG
EKAKAKGKAPATSLSDLMARMILVVTASLILAGIGGWLAPSLLSALSLTT
GGGPASGNMRGVMVGVFLFLFTVSFLVIGRKLIPYAEILSRPKKTKPIEE
AIGQRPDMAPGAHLAPPPKAATSEEALSSIDPVALMEDMGPIPVPPPPTE
PEQKIPAAQSRKARKKAAEARAAEEEAERRRRENQDFQEHDAREMAAREK
EKRAKEAEARKAAEKEAEDKAAAEKEAEEKAAEQAKAAETLAAEDIASEP
PASSPEQDRLRLTALSFLGEMVAALKVSHPQLDVYDRFGINLFLAGACET
LVAGNDLSGSAKPALLREMLGVMGTRPALALMFSDKLDEYLMEPRYMQML
QAGRQAMGMKLAGGGEPFAPLPQLMADWRAPQAARPATASTVAIVFTDMV
GSTDINARFGDRHSHEITRVHNAIVRAALGRFDGREVKHTGDGIMATFPV
VSQAVEAMIEVQKALAEHNRIAPDLRLDLRVGINAGEPLVDENDYHGLSV
TLAARLCAQAQGGEVLCSGVVRDLAQGKDLTFRDRGQVMLKGIGEPQRLF
EAVWRDADAPSPPPPPPPPAEEPAAFKETP
>Rru_A0262 chemotaxis sensory transducer
MYMPNPTLSLLKADARLTEDLNEIHPLMVSMIDDLLGEFYDTVSRTPELY
AMFGSAQSVERARLAQRRHWVEVLFKGDWKAHASQAQRIGKAHVDRGITP
SIYFAAYSHVLCGLTGRMAQAKGLRSEALARGLRAAIRAVYIDMLAVLDV
YFAEERDRASIKITGHANSFQDTVLTLTGEVAEAGTTLDQTAGAMARDAE
TLEARLHDLEQNATETAMAMNTVAGATEEISASMGEIARQNSLAAEIASE
ASERTGALAGVVAKLTEAAKGISDATRFIDTISRQTHLLALNATIEAARA
GEAGRGFAVVAGEVKTLAQQTAGGTAQVEEKVANIQKTVAEAALSIGEII
GTVQKLDLVTEQVAAAVTEQQAAQGEIMRNIGQVATSVDAISQATADVRA
LSRTSSASVGLMSRATTSLVERIGSLRANAGCFLSAVLAAAK
>Rru_A2604 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)
MLGKFLAVQQALRVSLLSLAVSLGFLGMQTVWLASAADRDYLILRDRTAS
SLQSGLSNALWNFDAETAKAIISDALRANPIRSIHVIDSNGRVFADGQSA
QPVVAPSLWESYLGWLVDLKSEMTLDLRFSSPTDDHYQGMVVGFVFITFD
KDHFIRGIADRLADQVLGILVIVLVVALTTSIVFHLFISRPIIRVARGVA
DVDPEDPAATVLTVPRAHQRNEIGRMTNRLNHLLGRLAEVQGELRLLATR
DPLTDLPNRSLILEMMDATINRVALDGGRCAVMFLDLDMFKHVNDSLGHE
AGDLILKDIGRRFDAVVAGLGAVGRLGGDEFVVLIDRYEREDDLARIARR
LITTVKRPIEVDGTLVHSSTSVGIACYPVDGATPQGLLRNADTAMYAVKA
SGPGQWAFFDRSMTENALVRLRTEASLRSAIEKGQFVLHYQPKLDLRSNR
ISGCEALIRWDLNGDLVPPGRFISIAEETGMIYDIGLWVLREACQAQRRW
RRHAGAVPIAINVSVRQLKDERFIDDFLDIIQASGADPELLEVEVTESAL
MSSIEVSAHLLREMRSHGVRLSIDDFGTGYSSLAYLKNLPIDILKIDRSF
VSDLPEESSIPRMIIGLAGQMGLRTVAEGIETEGQLAWLRDNGCDMIQGF
LIEKPLPEADFLRFVDAYRTARAFPSAS
>Rru_A2327 CheA Signal Transduction Histidine Kinases (STHK)
MSTPLLLRFLSEARDLLQTAASGLLALEKTPGDDAALNEVFRSVHTLKGS
VGLFDYPAFTKLVHAGEDVLSAVRAGQVALTSELVDLLLDTLDQVGAWVD
AIERSGLLPDGAEGLSLALTTSLRATLPREHGAEPTSAPEPTEAPVSIDH
LALLPEADRLAAFRAALCGAPLLSLDYAPAEDCFFSGEDPVNLFRQIPDL
FSLVIEPRTPWQSVETVDPYCCLLRLRALCGGNKTAIEQLFRYVIEQVTV
HTVPAHLLVIPQGERNDGPVYGDFVEEASTHLAKADWPALRRAVGALLDL
TARPLFVASALRWLDAVLSVPTPDPGWVEALIAAVAHGNAVVLPPAGTGA
ASARSSAALSATILSILDGQRVILEMPRDEGLPGRLASVARTVDNVLRAA
GHDTAPWTGATAAAGQSGSAAPMLAFLAALFETSETTNETASETASETVG
APPPEGGEALGPVLADQRPANRVLKVDQAKIDTLMALIGELVVSKNSLPF
LARRAEEVHGSREMGREIKDTFAVVDRLAQEMQAAIMAVRMLPVSEVFER
FPRLVRDIARKLGKHIDLVIEGEDTAADKTIVEMLGDPLLHIIRNSLDHG
IESPEEREAAGKPPTARVLVKAFHDSDQVVIEVSDDGRGIDPVKIRAAAV
AKGVIEAERAARLSDQEAVNLVFLPGFSTAGQVSDLSGRGVGMDVVVSTM
DKANGVVSLSSTPGLGTTVRLSLPLSMAVTRVMMVEAGGGMLFGIPMDHI
AQTVRIPRKAVRRIKQSEAFVLRDAIVPLVRLDTLLGLAPPVWFGDESQE
DAVLVVRVGNALTGLVVDHFREGMDIILKPFDGILAGLPGYSGTALLGDG
RVLLVLNLKELF
>Rru_A1034 Multi-sensor Signal Transduction Histidine Kinase
MIPIFKAWAARKRSSEPTAGQSEFDLADPFVAFSDSDSAPPSAEPPSFGP
PAAALPPVLTKGDGEGTEDPLVAWRAEESPRRRTDPPPAERRHDPFLGGS
FGGAGDAVAEEVSRALSWDEAEKTGGRVGEGEADTLDPVDEDDLYEPLSA
TPRDPDAPRIARDPPSPLGVDPLEAPRREAEDHREFSIPRSEPLAPFLLP
PLPEDPLATSPSREGRPPRQGVDKSDDPAAMAPLAAAAPVERPSGQTGRR
EPPLADIADASDSEPPEEEDRADEQQASLGPGLGEGAAHGMPAFLAEPAS
ARSEARTRLDPVACGLLGLMVSLGPLGVAAGTVLATGRMPTDRWTLAAAG
GLAGLFLVCAGLAAWGIWRHLGGRITRLSAQIEATDQRGRFLGRQARAAK
AYLSGVLDGAPLAIVTLDGRGTIIGLNPAAEALFGYPLPRAVGRPLSLLT
AAGEDGGPPWPAPTGEEEGPRRVEGRRADGSVFPAELSLRALRRENGGGL
VVLFLHDLSAEGGAKSLAESGRAESAFLDVLASELVVPVEAMALALRSSH
PDLERVEQALSLLGQIATDVRGFANLEAGRVALEFAPVEVRAVCTRARAA
VLAPAAEFGLKVGVSVAPDTPETILGDEALLETVLTNLLDCALQFNALDP
AAHAALPGSITLSVRPLDNPPGRLRIEVGCPASEGGRDGLDPASRRRGPI
LPGARLRLEPVGSRGRTGTILVITRRLAELMGGRVGMESFPGRGTVLWFE
LDD
>Rru_A0540 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family
MRLLIVGSLDGQVGEASRMAMDRGAQVSQVGGIDQALAFLRDGKGADLVM
IDVRLDVNRLMVGMTEERMATPVVAYGVGTDTQAAVRAIKAGAREYIPLP
PDPELIAAVLEAVTEESHALVYKDPAMGALVRMAEQIAPSDASVLIVGES
GTGKEIIARHIHRKSRRAQGRFIAVNCAAIPEALLESELFGHEKGAFTGA
VARRLGKFEEANGGTLLLDEISEMDVRLQAKLLRVLQEREIDRVGGRQPI
KVDVRILATSNRDMEAEVRAGHFREDLFFRLNVITLALPPLRKRPADIDL
LADHFARKFADLNGVPYRPLADETRQSLRGHSWRGNVRELENTLHRAVLL
SSGPRILPEAILLTGGDTANAPAGESTLTGSLVGRTVADVERDLIIDTLR
HTLGNRTHAATILGISIRTLRNKLKQYTEEGIPVPAPGEGEATHP
>Rru_A1396 chemotaxis sensory transducer
MQLRRTLDQIAGAIRTASTSTEARFLEIGGGLETSVEILTSLTQTFATLS
DALKGETLARATRELSQIASRVSSLAAAQNSEIESFVALTKLIATIESRV
VRMGKSVRGVGILATNTKIAAAHIGDTGVDFTSFANEINRTLRLAQTSLD
EFAGELAEVGRDLHVAINTQSVLEEQQTEAIRTIPRRLTRSIEAIGARCK
TAVSTAFAVGQGSQRIGRRIGDAVMALQIGDITRQRIEHADYALGLLAAP
PASLEADEASHADVIDFFCQLQSRQLEDAADEFDMEIGRILMSLEDLALD
AGEILRLGNDAFAASGDHQGTFLGELGKEVAAVDDLLGGFRAARTKADQI
AASVSDATTRLVSHIGTLRSLEADIRIMGLNTTLKCGRLGNAGKALGVIA
QELRHYANEITTEASEVMADLDQVVSITKALSDEAHQDRASDIAAVSAIM
ADSLALLGQVGQSLASALASLEHDGHVVADLLEKTSARTAVHEEIAEVLR
GAARKLAEGPAGLGTIPAPSGPEADRLFDLLIASYTMERERAVFARQAPG
RLPLAAAPADAGEAPSASPPPSPGTTDLDDIFF
>Rru_A0082 chemotaxis sensory transducer
MTVMATASSVPAPTTEETLDPERIISLTAEVRTTMIEKIAEIRAVTGRTR
ILALNALIESARAGETGKGFAVVAGEVKGVSDEIAQIAGTLQSELSARVE
ALERIGRGIVDQLRGQRMVDLALNAVELIDRNLFERTCDVRWWATDSAVV
DCLSAPDGPAKAFASKRLGVILAAYTVYLDLWICDGEGRVIASGRPDRYP
VHGQSVATTGWFRDALATKSGDDYAVADITRVASLDDQPVATYAAAIREG
GLPHGRVLGVLGVHFDWGAQARAIVEGVRLPEGDSWRSRALLLDAKGRVI
AASDGKGLLSEQIPLKTEGRTSGHYRLGDGTLIGFHRTPGYETYDGLGWY
GCVVQYPIG
>Rru_A1408 chemotaxis sensory transducer
MALLANSRIVTKFIVVFCVMAGIMVALATLNGIQINKIDTDYSALLENEV
IIATEALRARGDIQNIGRQMNNVLLIREPPSNLDKIASSLLDLQTLIAKS
LDKIEQTGDGKADAMVNEVRAILERIKRTSAATIAVKRAAAADHDTVARA
TWGGPDGRPLVLGIYDRLESFSNETLTRIDTISGELSAQSTNTIWLSRAL
TGLGLVVGMALSFFVALVGIVHPLARLREAMAKIAQGDLAVAIPGVERRD
EAGAMAGAVMIFKTNMQKNREMEEEAKQTDLRVQKERRDAMTQLANSFES
RVMDVVKGVSASSTELQATAQSMSRSASQSNTQTTTVAAAAEQATANVQT
VASAAEQLSASISEISRQVSESTRISTAASEEAARADAMVQGLASTADRI
GAVVKLINDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKGLANQTG
RATEEIGQQIAAVQEETRRTVEAIKGITTVIDQVRQISSSIASAVEEQGA
ATQEIARNVQQAAQGTRDVSHNIMGVSQSVASTGGAAEQLLASASELARN
SETLRSEVALFLSEVRST
>Rru_A0718 chemotaxis sensory transducer
MRTLNNIGIGARIGYGFSVSIVLLILVGVMGGFILVRLGEVVDVFRSQTF
QSSAVGQISTNLMTARFKGKAFLSHGDPALAADVQELGRKSAALLGEANS
HNLTEADRGLLARIESGVTAYFAAFSKIIGLQRQREEAYATLVSLGPDLD
RAMAGLLDGVYGVGSIEATMEVAKTIRALQTARIHTTFFVLDGGLDRFGK
AEESFHEVRDRLIRLRPSLGAGEEGQTIDGLLQRIAVYGRALEHLRGAVN
ARQDLVSGTMDVVGPQVSALTGEMQKRVGEEQMRLGAVVKDDIARGLAMG
AGAIVLAILLGGGAAIVIGRSVAGPARALTLAMGRLADKDMAVDIPAVDQ
TDEIGRMAKAVLVFKENMIRADALDAKQKAEAERRDERAKRIMEINAAFD
REVGGVIGVVSTATVQLRATSESMSAIAEETSAQAAAVSAAAEQASANVQ
TVSAAAEELSASIEEISRQVSNSTAVASEAADHAGQTREAVRNLEDSAAQ
IGEVVKIITNIANQTNLLALNATIEAARAGEAGKGFAVVAGEVKTLASQT
AKATEEIAQRIAKVQEETEAAVTAIEAISAAIGTVREVSTSIASAVEEQN
AATGEIARNVVEAAAGTREVSSTVVGVHQAATQSGGAAVEVQQAARDVDT
QATLLRELITRFLAEVRAA
>Rru_A0820 HPr kinase
MHHYRVSGWTLATEIPLPHLFPCSAPAGEAAADITLRQGPVPPPPVPLRL
DRDGIQVGADGHTVIDIPNCVRIGLTGGRDIMVDPAPGASWPEIQTWLLG
PGLGVICHQRGVLPLHACAIRTGKGGLAIVGNSGAGKSTTATALVQRGHR
LLGDDVLVVDPDTGLAQPCFPMVKLWDSSRSALDIGQEGQQSVGGKIGKW
HMPMLAAFDPVPRPLSAIVHLRADPAARRPVLTRWPRPHAAAVLDAMTYR
VYLADALHGRRHVLSAATRLAAHVPVWELVRTADFADLAEMLDMLEGLAG
A
>Rru_A3496 chemotaxis sensory transducer
MKASFATAYSPSGGMERSFASPPSPSAASSGRGRFLARLNRSPLAGFSIP
IGARMVILVLLGLLAFGGAVAIHFVSEAASREIEDRRAVLRDIDLGVKDI
ALNVAGLRLAHQSYATERAEAVARFRALAEAARGDLGRVGVLAAAAGIGE
AGKPTLDRLMTGAAALEAKMATAAAAQETLGVGEGEGLRGHLSGVIAGIE
GELAQWPNVGQIAVKLAQVKRFEQGFLIAPGPDALGRLRKAANEFDFALM
GGPFDADTATRLSSAVGAYTKGLTGYIAAVETSKAAGATLTAALDAFERD
LAEIVALADQETTLARQRFVETRAHMLTLLSWGGGGLLVLFVLASALVGQ
SIYRPLGRIERTMLALAAGESDVEVPGLGRRDEIGRMAEAVAVFKRNAAE
VDRLHAERRREGEEAERHRRAALLDLADGFERSVRHLATDLDRAAHLITD
KGRRMADEAGETDEAGRGVADLIAAAAQTLAEVVTSAHELVRSAGLARDH
LAQSQSAITGALAETTEAESRVAALSAAAERIGQVVDLITSVAAQTNLLA
LNATIEAARAGAAGKGFAVVAGEVKTLAQQTNRATEEIAGHVEDIRQAIA
GTVEGIGHISSEVGRVSGLTEALSAAVGAQEVAIGGIGQALDGTAATMTT
VTGNLERMGAVMARSARSALELRETAEGLADQSAGLERELDGFLERIRGT
S
>Rru_A0438 Multi-sensor Signal Transduction Histidine Kinase
MAWRLSVRMRLLAVFGVAALFAVIASAMGLLAFGSVERAQKSFLESRLPT
VELAQSLAHRAQAVAAAAPQMVIASTQAGRDSAGAQISTQIANLDRLLVA
LRPRVSDRSFLEQLEAQKADLTEALKALDHWVGRRIGLRRKLDERLSEAR
DRLNEARALLAHRLAKSSPADDQPVRLAMALVSIERAATLLEALPLAAAG
RLAWLESAFGAELTMAARDSEGDGSWEGAGEVRGALAAAEALARGPEGLF
ATRDGLEEAERRCEALLVAYSQFANRLVYSADTLAAETAAVMNADGRSLT
ATLGLISLILLAIAALAVGGALVMALFADRTISGRLATLRQSMAAHVAGL
DAPLPDLGRDEIGEMAQALKIFVATIADREGALKASQDYLRAVLDAVPEG
ILTITDTGEVVGASRSAESLFGPGPGLIGKELSLLISDAEGGRLSLEGAE
SAGAPQAVIAHRADGDSFPGEITVAGILRDDRQIHVLSLRDISERQRIEA
ERQRFVALLAAAQEATADGLMVIDLDGAIITCNQKYYDTVGISPDAFVPR
SRDERLALLAGLMAEPQYFIDRIEEMEADPDLTAYDILHLADGRLIERYS
SPFKVGGILAGRLWSVRDITEREKARAELTEAKEAAERALSDLKDAQRNL
VEAEKMAALGQLVAGIAHEINTPVGITVTAASFIADEAKAIGALIDAGTL
RRSRFAGFLESLRESSTLLLSNANRAAELIQSFKQVAVDQTSDERRTFDL
GHYVTEVLISLGPSLRKLPHRVTVDIPPGIILDSYPGALAQILANIVLNA
LSHAFLPQRAGQITVTARETEEEVVELRIADNGRGMSPEVRDQVFEPFFT
TTRGAGGSGLGLHIAYNLANRTLGGRIGVDSAPGEGTTFIVIIPRVAPPA
PRALRSSGTVIHGQ
>Rru_A2562 CheW protein
MNQLTAAGDSRSLTTVKGANALSTVDEQVFVTIYVEKQLFGIPVERVQDI
LIPEKIARIPLAPPEVAGAINLRGRIVTVIEVRKRLGLKAKKTGGPVMCV
TVELGNELYSLMVDSVGNVQTLPVARIEANPTTLDPRWRAISRGVVRLDG
ELLVVLDVDTFLTFGTN
>Rru_A2929 Two component Transcriptional regulator, Winged helix family
MDMMDEPGLGAAETTPPDRDALILVVEDEPDIADILRAYLERAGMRVVSA
RDGRRALDLHASLNPDLLLLDVQMPVMDGWRVLSELRHRGDTPVIMLTAL
DQDIDKLMGLRIGADDYVVKPFNPAEVVARVRAVLRRMGGDGGERARRVL
RFGTLRIDLDGHEAMVEDDGGRCLAIDLTLTEFRLLVHLARTPKRVFSRM
ELLGACLPEGEALERTVDSHLSKLRKKLEAFGVMGVPTNVRGVGYRFGGG
>Rru_A3363 PAS/PAC Sensor Signal Transduction Histidine Kinase
MSGEPVGLALQRLYDLTRLVSDWIWETDSAGLLTYASDRVFEILGYPARA
LIGHPFAELAASGDPPFFKSDPRPFREQRFEARHSDGSPRVLLISAVPLF
DAQSGDRQGWRGAAKDITQSERADAEMDRQRRFQQTLLDAIPLPVFLKDR
EDRYQGCNLAFETASGRSRAEILGQRMEQVLRSENYDRHRAEEALVLREG
RTRVWEAMEHDVSGRHKLISITASPYREPGDPTVRGLIGVVSDITRRQRA
EDALRASVVELTASNRELQHFAEIAAHDLQEPVRAVVSHCQLLERHLGDA
LDGPARDHMIFAITGARRMRDLIQDLLIYARAGRDGQFHEVVDTADLARE
VVSALADEIAASGATIRIDPLPSVLGRRRDLFDVMVNLFDNALKFRRPDV
VPEVTLKAAETLDASGLWCFTLSDNGIGLDPVHGAQIFALFRRLHGADRY
PGTGVGLAICRRIVEQHGGTIFVESAPGVGTRFHFTLPAAPSEEPDRLVG
RGTRSAPRPVIDGGG
>Rru_A0634 Cyclic nucleotide-binding domain (cNMP-BD) protein
MGTFDFTISPFDLLAPAERDKLQGGADIAYFTAGERLTGPDRPGDALFVV
MKGLVAEREGDDLLTVHGAGDCVGALALIHGTPALICEAQEETIAHVIPR
QLVLDLCRSNAAFERFFATSLGDRLASHAQTRHLRGVAGFMVAKVGEAYL
HPPIFVSGTLGLRDAALLMKRHRATSLLVTGADGRVGVLSGSDLREWAII
REQPLSTPVEACATFDTVFVDVDDFLFNAQVLMTRHGIRRLPVRRDGAVI
GVLEMIDLLGYMSSHAHLVALRIDRADTLDDLALAAQALDPLIQGMGGSG
VRLRDVARMVSDLSRKLQRKLFSLIADPEIAQSCCLVVMGSEGRGEQLAK
TDQDNALIIKDGIDPESLRGLCNRFTEAMLTFGYPPCPGGMMVSNPAWAK
SESALRDDVYGWITSPSEIGFLNLAAFIDAEAVAGDGAMLARLKTLLFAR
LRGNSAFLSLFARPILAFDTPLGFFHQLLIDHGSAGGGLDVKKGGIFPIV
HGVRALALEHAITETSTFDRIEALRGLGALDDGVATDLVEALQALMALRL
EARLGRSPQDGAVADTLIRAGSLTRSQHTALRDALLIVKRFKALLTHHFH
LESF
>Rru_A3295 circadian clock protein KaiC
MTLPLLTEVEKLPTGIPGFDLIAHGGLPAGRTTLIVGTAGSAKTIFSAQF
LAAGIQSFDQGAVFVTFEESVADIRRNLAGFGWDIPAWEAAGKWSFVDAS
PYPLEDGDVVGSYDLGGLLARIEHAVRQTPATRVVLDSLGAVFMRFADPA
TLRNELLRIAAALKDMGVTTLMTAERSEEEGPLTRTGIEEFVADNVVILR
NLREGERRRRTCEILKYRGAYHQKGEFPFAILPGSGVQVIPLSAMELRQG
SSDLRIPSGSVDLDGMCGGGFFRDSVVLVSGATGTGKTLMSTHFLNGGLQ
AGERCLLFAFEESRPQLFRNASGWGIDFQAAEDSGQLRVVCDYPEVASIE
DHLIKIKEEIDTFHPHRVAVDSLSAIARICSERGFREFVIGLTSFIKHQE
VAALFTSNTPTLMGGSSVTEAHISSITDSIILLRYVETFGEISRGVMVLK
MRGSRHEKEIREFAIDATGMHIGRPFRTVTGILAGNPQYSHQSEADRLDR
LFPK
>Rru_A0099 Serine phosphatase
MILTRALRKMPLGRRLMLTMAIYALAVLVIVVSGWRLVTLVEDYRSTTEV
LDLRMREITAVRDTSSRFLTVITAYADTRDPAIGDDVAFKYGQIGRAAEA
VSLKEDDIEAVLGGLETVLKDSMGNFEDLRALNQRAGQTYHHLGRLAGEV
SGLMAFAQSRMAQAGGSPDPLIARFDQVTALIDEFHIFQRRATGKEAEST
LAAFRDALESASRSRPTEAERLALSLADDRLGQISHELTTLLRLSDSWVG
QSRFLVFVNLEKVTAAIDALDTLGKVREHQLRADLQDKTRATLIFVGSLA
GVVLVLGFLANALVIQSIRRPILALNEVMQNLAGGTLDRAVEGQEAADEI
GAMARTLEIFKLNTRRMNELEVEKREILRRENEEIAQSLAQLDEAHREIS
ALNTRLNSENLRLGAELDVSRRIQQMLLPRDEELSEITALDIAAFMESAD
EVGGDYYDIMKHEGGVRIGIGDVTGHGLESGVVMLLTQSAVRTLTTDGRG
DRASLVDVLNRSLAGNMRRMGSGKNLTFALIDYQPRPEGGGAMRVIGQHE
SLIVIRTDGRVEELDTLMLGMPLGLVDDMRTYLDEAALSLEPGDMVVLYT
DGITEAADTGDRLYGMDRLKATCLAHRTETSGAIKDAVIADVRAHIGERA
VLDDLTLIVIKQR
>Rru_A2868 Putative diguanylate cyclase (GGDEF domain)
MAFGSWSLRAQVGLVFGSLVTLVCTVLVWTSNTVLEAKGEEAIGVQLSSI
ASNMADKFDRGMMSRISEIAFVSSLDLFRNPSNPRAIRHTLDDLQEAVPY
FTWIGFTDPTGTVRAGTNGLLEGADFSQRAVFQQGIQGPFTGNLHEAPML
AKALGASGAEPMRFLDITFPVTDLAGAVVGMLSAHIDWAWARELEHAALE
SALSRQGLELLVVDHAGTVLLRPEGLALPKTLDLEALRHSQTRPKGWTIE
TWPDGKVYLTGYARQRGYKAFAGFGWRILARQPVEIAFAPLAEVRHTLLL
AGVVGGVIFGAIAWITAGAIARPLKRITEAADGLRDGAVGAALPHLTGSK
EIERLSESLRLLINALTATDRRMGRMEKLAHNDLLTGLPNRAALGAYLDR
VVPALSNAQAAIAFLYLDLDGFKAVNDTLGHGAGDDLLKAAAGRILDCLR
QGDMAIRLGGDEFVVIVNTSASSWRQESIRVAERLLTALDGPFALPGGVR
AKIGCSIGIAAWPDDHCDIEGALHHADIALYQAKRLGKGQSVVYADLPKS
VLHDG
>Rru_A0741 Signal Transduction Histidine Kinase
MFSLIDSLVGETALLPHGQCLLWDTPLLALHAVSDALIALAYFAIPLAIV
IFVRRRPGLEPLHLALALLFAVFIVACGLSHISSVVTLWIPAYLTQGLIK
AATAVVSLVTAFVLFALIPRLLAIPSPAELREANRRLGQEAALRQGMVED
LIVARADLERRVEERTRAAVKIMENFEVTLRGSAVTIFQQDLDLRYTWIH
NLRPPLVASDYIGRTPRQALPPEAAAVIEPFQREVLRTGVKDRLILAISR
GLDEGVWYDIQSEPLRDDAGVISGLASVAVDITSQKAGEQQLRVLMRELT
HRSKNLLAVVQGIARQSAANVPDVKTFTERFGARLQALGESHDILVSTDW
RGAAIPDLARAHLGHFLAVSKERLTLRGPDILLSPEATQQIGLALHELST
NAAKYGALSNDGGRVEITWETRPSPLGVDLVLIWREIDGPPVVPSERTGF
GHIMVTYLVPRSLRGTATLTPAAEGMLWTLTFPLFIRQNPHPPATPTA
>Rru_A2460 chemotaxis sensory transducer
MLKNLTIGARLTLLGLVAFATLAAIASIAIYSTYQARFEDRRETLHLLAQ
TAVTTIAGLKTRADAGEMTTEEAQKRALVALTSITYGKGNYFIVLRSDGV
LLMHPTRQNQVGTNVLEGSDAVAKELYGTLIPLAMRNGEKGDFHTSMGRR
PGSTVNNSPKMFHALQEPSYGWILASGLFVDDIEDQIASQARLIGLMALV
AALILGGVGLIIARGITKPLKTVVEGLDGLADRDYRRSLDIPASRSEVGR
IASAFERLRGLLLEAAEERRQNAERTEQAALARKEEMLALASRFENQIGD
LVNGLGSASEALRVSASTMSSGAEETLSQASTVTAAASESSENTQTVAAA
TEELASSIQEISRQASHSNAMARTAVERVDETNKTVAALNSAALRVGDVV
ALITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKSLAQQTAKATE
DISRQIEDIQSVTTSTVQAISAIGESINGLSEVAGMIAAAVEEQNAATKE
ISMNIQRAEGASREVSGAISLVSEAARSGGETAADVLGAAEDLFHRNKEL
NTAVSDFVSYIRSAN
>Rru_A1544 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
MAADVVFPGLCVFLSAGLLLALVHGRRVGRRADRQCRHLAAITDTMSEGF
YVVDGDDRIVMANAAAGRILGYTQDDLIGACAHALFHARSADDPDPVPLE
ECRLNRAVRERRAAFLDVGHFRHRSGKIIAVEVSCNPVADTLAEEGRRGG
LLGWLLDGDDAEGAPGALLSMVTFVDITARRESEAAVIKLSHAVEQSSAS
IVITDADGRIEYANPAFTKISGYTAQEAIGRRPSILKSGLVPAETYRALW
QTITNGGEWRGEFHNRRKDGTLYWEMASISPIRDARGKITNFVAVKDDVT
ERKAIESELYHRANYDALTGLPNRQLLLDRVSTALDLARRHDRRVAVMFM
DIDRFKQINDSMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEFLVVA
PGLRWESEATALASRLLEVARRPFTIDGREVYVSVSIGVSLGPVDGTTAQ
ALMRNADAAMYLAKGGGRDAAHFFTPDIEAAARRRMLIENGLRTAVSDGS
LYLALQPIIACADHTMIKAEALLRWTHPQLGGVPPSEFIPIAEESGLIRA
IGAWVIEEAARLLVSLDPPRDGAFRLGINIASSQFTGGLHHHVAGMLARY
DLDPRMLEIEITERMLLDPSPAILEQVDALRAMGVSIAIDDFGTGYSALS
YLSVFHVDTLKIDRAFVSVMTDEARSQALIGAIVALGHELGCAVVAEGVE
TADQARLLGELAVDALQGYFLGRPTTAEAISDRLNPGTGRPYDKAALGTE
FAEGGDLGLSVGAL
>Rru_A2930 Periplasmic Sensor Signal Transduction Histidine Kinase
MASGKKTSGLRRQIFLSMTVMAFSVVLLSICGSYVFYAVFLTYSPSSISD
DLLPAPAEVAWMTVTMLAALLLAAVIAIRLARRILTPLNSVADSLHRMAE
GDLSARAVADDLSMGEATRLVADFNNMAERLDGMARERAFWNAAIAHELR
TPVTVLRGRLQGLAEGVFEPTPAMFSGLLIHMEGLSRLVEDLRVLGLDES
GRLELRLEQCDLAAEIAALINAFEPNLRAAGFVLAQDLDGGEVVCDPMRI
RQALSALLDNAIHHAEPGALQVRLRLEDERIRLQVEDKGPGIPTDLMECV
FDAFRRGAKPRLGGGSGLGLAVVRAIARAHGGEAACRASDSQGTIFELTW
PA
>Rru_A1435 Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family
MIDVAFIDDDDTMRAANVQALTLAGLTVAPFALPHEALAAIDGAFPGVVV
TDVRMPRIDGLELFRRLRAIDPDLPVILITGHGDIAMAVDAMREGAYDFL
AKPYAADRLLTSVRHALDKRHLQLENRALRRAAEAASENLPLLGDSPSME
RLRKTLRQIADADVDVLVEGETGAGKDVVANALHRWSRRAARPFVAVNCG
ALPETVIESELFGHEAGAFTGAVKKRVGRIEHAHGGTLFLDEIEAMSPGL
QVKLLRVLETREIAPLGTNDIRPVDIRVVAATKTDLPTLVRQGMFREDLY
YRLHVVSLRVPPLRDRRADIVPLFAHFLDRAAKQFGRAVPAIGEAERRHL
QTHDWPGNVRELAHFAKRVALGFSDEPDQADPIGQDEPLPRRVDAFEAAQ
IRKALEATQGDVQAACEALGLPRKTLYDKLRRHAIDQSAYRPTPG
>Rru_A1049 GGDEF family protein
MADEIERTQPAREPGDALRRRMDAYPPPPDHPDHGASQEDRQRGRSAYRL
GASLAHPPQPIQDEASVLGLPPRLLTPRIQEAITGLMEEMERTRLRLASS
QAHESVLSGLADADGVLPVLNRRAILRELDLRVRLAREGGPPFLVSLFYL
TNFDALRRIAGLDAALAGLTRLAAEVLSAAGLGDGRLKADDLTEGRFPPL
AGSLGGASVLLARGDEPQRPPDQLGARAEKIRLGVTDKGLRWGGVLLPLA
VSAATVLADGREETGALVARLDGLLRQ
>Rru_A1603 PhoH-like protein
MAKRTAAVVQSLPSSAWDPLDEGRRDQSYLKTVKPRTTNQDLLMRAIDSH
PLTMALGPAGTGKTYLAVAKAVEALTSGQIARIVITRPVVEAGESLGFLP
GDINEKMDPWMRPIYDALSDRLGAKQVRQMVKDGTVEVAPLAYMRGRTIS
RSFLVVDEAQNMTFMQIKMLLTRLGWHSTMVVTGDPDQSDLLPGVSGLDD
AVRRLEPLEDVAIVRLGAEDIVRHPLVAAMMPLLA
>Rru_A2228 Putative diguanylate cyclase (GGDEF domain)
MSMFDLQDRLRGAVSAFVEGAIVSAEAIAPRLDLLRASGWADEDAAADVS
HFVHRLAGTAGTLGFGDLGRTAGALETLIADIGEVRLAEGAAAVAPDILA
QADLLADIILAGLKGVAVGGSDLLAAAMTPAPGLAGSPDPAVVATIGAGP
ALLDMVRATGTTAIEIASPDALEALSVVCPGGVIVNLEAMDGDDAWRGPL
DGLRAQGVPVLAVGGTGDFPWGLRACRLGVDAYLPLDDPGEVLDRLARMR
LTRHAEPLRVLVLDDDAVLAGVYATILGAAGLEAEGMTDPAQILERLEAF
EPDVLVTDLHMPGCSGAEVAALVRHRAQYATMPIIFLSREQDLGLQLGAL
SPGADFFLPKPVRPDFLVSAVRSRARRGRGLAEMMRRDGLSRLFTHSTIL
DGLEREGARAGRTGAPLSFALLDLDHFKAINQTHGHATGDQVIVTLARVM
RRALRGCDLLGRCGGEEFAVILPGTPAEQAVGVIEDLRALFRGQTLRAPT
GEVRATFSAGVAGTPAGAPPLSATALFTAADKALAEAKARGRDRVVLAES
>Rru_A3345 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
MTPPASSSPCSSSDKRNRAVPSAKALMVWRAGPDGRPLDPSQFPQDPPAR
RDGDGGGAEAWLNLVHPEEREAVLLLWRRALREGEEFEARYRLHRGLSGY
RWALGQGRPLRGDDGEVREWIGTVVDIHDHMEAERTIALSEERLRLALDS
ADLGVWECTIATNQWWFSEAALRILGCPPDAETSIETVMGAIHSDDLDGL
RARWHAARTGRARDRMEGEFRIQRGGGRLGWIACSARLVADDGKAVTRML
GTLRDITKTRLQREKLYHLAHFDPLTGLPNRHEMITRTQATLASGGAAGG
AGAILLLDLDGFKEANDTLGQATGDALLKRIAHRLVSSLPADSLIGRVGG
DEFLVVVPGVAEQWTATRIADGLYDVLTVPFVIGDRRIPLSGRIGIALAP
RDGTSAQDLMTHAELALQETKTISGCVTRFFSPRLHDEARERQDMGLELR
RATDNGEFELFYQPQIRLSDRAVVGAEALLRWRHPTRGVMPPAAFLHVLK
RGPLAGEVGEWVVAKACADAAGLLNAGSRIRMAVNLFSAQFKAGTVDATV
RRSLLESGLPAELLELEITEKVTLDRDEGILTCLKGLRDLGCGVAFDDYG
TGYASLSMLKRYPLTRLKIDRAFVQHLAESPKDGAIVRAVLSLGNTFGLS
VTAEGIEEEEQEKLLLGQGCDEGQGYFFGRPMPLADFIQFLARVKKNPGE
FPTPA
>Rru_A1403 chemotaxis sensory transducer
MMRLSIPLKLAFTFAIIVILAMATAGLGIQKLGALNGSLVAMVEGPVQRI
QLAQELYSELVTVSRSEKALLLAGPDTQGQYETRIAKEQQGVETRRDQLA
ALATEESANAISAFTPLWQQYATLQSQIIALAKSGRMEEAIALSRVDARA
VLDRADTTLTALIESERAAMTRTEAQAASQYAEARLLLIGLILVSVLIAV
VAATWISLSISRGLRGTIRLAEAVSIGDLDQTVSVKTNDEIKDMVDALNT
MTATLRATAKIADTVADGDLSVESKPLSDKDALGIALRRMISSLRATAEV
ADAIADGTLTVEAKPQSENDTLGLALKRMVEKLREVVGEATSAAENVSSG
SQELSATAEELSQGATEQASSAEEASASMEQMAANIKQNADNASQTEKIA
RQSSLDAQASGEAVTRAVVAMQTIAEKITIVQEIARQTDLLALNAAVEAA
RAGEHGRGFAVVASEVRKLAERSQMAASEISTMSSQTVRAAQEAGEMLGR
LVPDIRKTAELVSEISAACREQDIGGDQINQAIQQLDKVTQQNASASEQM
SATSEELAAQSEQLQASIAYFRVDEGSGARRSTPSAKPPTIGRVARSLGK
AGAARGGPGRKAGMTTGFSLDLGHGAGDAQDGDFEKY
>Rru_A2603 Two Component Transcriptional Regulator, LuxR family
MRVLLADDHSIIRNALKFILQDLEAEVTFEEAREYPSLEDRLAAEGPPLD
MVVMDLQMPGYEGLAQIRRIVERAAPTPIAVFSMMEAVEDMRAVLRQGVR
AFIPKSTDEALIGTLLKLVAGGGTYVPAQVSGISDCRFPPPLKVVLATDI
RTIGEDFDDNPRLSDLTRRQREVLALMSQGLSNLEIGNRLGLNLSTVKTH
VTGILKALDAGNRTQAVLMARGLDHG
>Rru_A2367 Response regulator receiver domain protein (CheY)
MTDTVNDQQSDLVLIVGENPITREVLSRWLSADGWMVIATDSGPKALTQA
AERRPGVMLVDLDQPEAEGDETFARLRQIPAYAPRLLALLSHAPPARRQA
LRQVGVLGVFVKPIDLKSVSAFLGAPDGQESCR
>Rru_A0080 chemotaxis sensory transducer
MTVPVKTSGTPPSPTRDRVDPETIIALTADVQSATAGKISEIRAVTGRTR
ILALNALIESARAGEMGRGFAVVANEVKGVSDEVTQIASALESELSTKVA
LLDRIGREIVDDLRLQRGQRLVDLALNAVELIDRNLYERTCDVRWWATDS
AVVACLEQPAAETRAFASQRLAVILAAYTVYLDLWICDAEGRVVAGGRPE
RYRTEGQSVAGERWFQDAMASASGDDYSLADIAPNRALDGQPVATYGAAI
RERGRGDGRILGVLGIHFDWGPQARAIVEGVRFTEGEAARSRALLLDADM
RVIAASDGKGLLSERFALKTEGRAAGHYRQGDGALVGFHRTPGYETYKGL
GWYGCVLQQPEA
>Rru_A0664 Signal Transduction Histidine Kinase
MTHASPRVLYIDDDPGTVRLAQKRLERHNLIVEVALSAREGLARIDQGGI
DVVALDHEMPGGTGMEVLSALAEREDAPPVVYVTGTGDTGVAVAAMKAGA
SDYVVKDVGGAFLDLLSIAIDQALEIAQARRERSRAEREVREAKDRAEIL
LREVNHRVANSLALVAALVRMQGQVVEDPKARAALEETWGRIVAVGGIHR
RLYTSEDVRFVGIDEYLKSLVADIESAMTSARCHHTIRVDTQPVLIPTDK
AVSVGVIVSELLTNACKYAYPEGSCGEIRLRCHQEGAEVLLDVEDFGQGR
DPGAPPRGTGLGTRIMAAMAKSLGSEVTYPAVSRGTKAQLRFSL
>Rru_A0496 Cyclic nucleotide-binding domain (cNMP-BD) protein
MSQSEGVQVPGPNRAEFPEGAVVFREGDAADGVYLVESGLVDMIVRRPDG
SEAVIGTVGAGEVFGEMALIDGHPRMATARVAMEATLVRVSNEAFRAQLK
SASPVIARVMRQMAHRLRTLAQDMANRAE
>Rru_A2330 Response regulator receiver domain protein (CheY)
MTSTIFLVDDSATVLMSMETILRRAGFTIAQASSGEDALAQLEKGLKPAL
IITDIHMPGMNGIDLIRKVRTMAGFQFIPILVVTTESQQSKRDEARAAKA
TGWLVKPVQPDDLLKVVKQILPNG
>Rru_A2820 Multi-sensor Hybrid Histidine Kinase
MSDAVLIREPALWGLGAGLGGALAGGLWSALGELPVAGWVAAIGATIALG
SLAALLRRFAQWGEAAARGGAAAALLDIEDGPRLLIGADGGARYANSQAR
TLWGGHPPLAHLRQRLHGDMMAADALGRLEEAARIGLREEVDLPLRDPEG
YSGEPEWVRVMVAPGREPGSRLWSCRDVTARRAIDEVLLREREELADFLY
FLPVGLYSADTDGRLRYANQVFAQWLGRDTDAMVGLDIDAVMEGPAPEPD
GAWEGRLRFLPVDEPAFDAEVRQSTFDDAGQLRTRSVVVRLPAGEAAPTA
GEGGWLRRRPWLFDGAPVGIVLTDPEGAITDCNASFLAMVGLEAADVFDR
PLADLAARNDREDLRALVDKVVGGGTAQADIRLVRGEREVAVGVFLSPMT
SLSGRPGDPPDGAVAHLIDTTEQKNLEQQFAQAQKMQAMGQLAGGVAHDF
NNLLTAMIGFSDLLLQRHGIGDPSFADIMQIKQNANRAANLVRQLLAFSR
RQPLRPRLLNVTDALSELSHLLRRLLGERVVLKLAHGREPVHIRVDPGQF
DQVIINLAVNARDAMPGGGQLTISTRREAVETEMNQGTEAVPPGDYVVID
VVDTGTGITRENLGRLFEPFFTTKSEGTAGAGTGLGLSTVYGIVRQTEGF
IFVESTLGEGATFTIYLPRHEPPVEVAGAGAGGAEGGVGPGDGAPGGGGE
EGGEARDLTGKETILLVEDEDAVRVFGSRALRNKGYTVLEARSGEGALDV
LEDGAEIDLLITDMVMPGMDGATLAGRVREARPDLKIILISGYSEDVIRG
DIVNQPDTHFLPKPFSLKALAEKVREVLA
>Rru_A2373 Putative FecR
MGRDGSDQEMTTATYTHEDPVVDAALDWFTRLRAGTPDDATLRAFRAWRD
GDPRHAREFRALEELWGAPTFAKAATLAGARPAAPARPSRAPWRRRLAFA
ASLALVLAAIWRSPDAVVAWRADYLTATGERERVTLPDGSTMILNTASAV
ALDFAKGERAITLLAGEAFFDVRHDADHPFTVTGRFGEVRVEGTAFSVEM
KDDRDEIVLERGAVAVRCVGASGQAAALHPGEAVSVTATALSPVRRAAPE
HDLAWRNGRIRFDERPLGAVVEDLRRYHKGPIFVLNDAAEGTVVSGNYRL
DDIAGALRTLAAATGAEVIELPAGVVILR
>Rru_A0721 Anti-Sigm factor, ChrR
MTLSHHPSESLLAAYAAGVLGEGASLIVAAHLTLCPHCRGAVDHLEALGG
ALLEEMAPLALAEGALDAVLARLDTPAAPSPTRATASRLPPPMGEAALLP
APLRRHLADPSAATLPWRAIAPGIRQIALLPRTAGGGNAHLLKIAPKTAL
PRHGHHGQEYTLVLAGAFQDRSERFARGDVAEVEADRVHQPITDGQDCLC
LVVTEGPLRYMGMIPRLMQPFTGF
>Rru_A2935 PAS/PAC Sensor Hybrid Histidine Kinase
MINGLADSTGWIAGGVGDGAQIALWVLGGGFLAGAWAWSLRLACRRGERL
ARARGPHLLDNLDEAVVVTGGDGRVAYRNRAAARLLAHLAPTAGSEPSLD
GFWEKALPLRPARTTDGLVVERRLIEGGSLDQGVCLLAIRQSLPPGAFTL
DPAEAGNAAGLSGLTLWTLLDVSHWRRLDQTVTEREARLSAVLNAIDESI
MRIEPDGRIGFINTAGTVILGVARDQVIGQPLAAFSPPAVAWVRQTRVRE
VIDGGKAVRFVDRSGDRWREHTFSPIPDGEGRTVAIAACSRDVTAEKRVH
QELCRREQFIRLITDNLPGVVFYVDEADTFKFVNRRVTDWLGKPPTDLLG
RPFREGVDPLLNEATLAGRKAALAGERVDFDSEFVDPDGHTRRFQATFIP
HLEGGEVLGYVGLLLDTTKRVEVEAAVRDALARAEAASTSKSRFLAAASH
DLRQPMQALNIYVGLLTRQVREQPRAYELVQRVGQSVNALGDLLDSLLDV
SKLDAGIVTAAPQPFAVNNILERMDTEMRPLFEAKGLRFRVVKSALMACS
DDTLVERILRNLVTNAYRYTQSGGVVLGCRRRGGTVVFQVWDSGIGIPAD
RLDLIFEEFYQVGNQGRDRAQGLGLGLAIVRRLSQLLGHPVAVRSEVGRG
TMFEVALPQASPEEMEAAVTSWTATGLPAIRDGTLAVVIDDDSAVLDGMA
LLLEDWGFDVVAAQDMLEAFEALRGSPKAPAVIIADYRLQAGGTGVAAVQ
SLRQAFGVTIPGVIVTGDTSPERLREVTASGFRLLHKPVRTFDLRAALAE
EMGEDALEGIPPQRRGA
>Rru_A2323 Two component CheB methylesterase
MTKVLIVDDSALMRRHLKEILEVHGGFEVMVARNGIEALAGLESFDPDVI
TLDINMPEMDGLTCLSRIMATKPKPVVMVSSLTETGAEVTLEALALGAVD
FIHKPDGTISLNVSRIEREILDKVTAAAKARIRRSLGLSSRLRTASDRGA
AKRTRPADSSPLPTLSLTEIGVVLIGVSTGGPGTLEEVLPGLSAGFPWPV
VVAQHMPGSFTPVFARRLNDLCPLTVIEASAQMPLEPGVIYIAKGDADVV
IGHRATRFVVNPMPAGPHYLWHPSVTRLVESALRALPPERIIGVLLTGMG
DDGAEAMAEVKRRGGRTIAQDEASSVIFGMPGELVKRGGANLVLPASRIA
GQLNAWMSRTKETVYGTGQS
>Rru_A2757 chemotaxis sensory transducer
MRAVLSLRVTGLRFLASGDRQWLDLANANAEKAKVAMVNAVAEAPDSLKP
LATRASAAIDGYRQAVNAIAKAHRDVADQDSAMKLQTIDMQNHLHTARDS
LLVEFARAKIDNDATIDRTMTLQAVLALLAAILGVVFAAVIGRGITVPIR
RITETMEHLAAGSDTVVVPYRERDDEIGTMAGTVEVFKQNAVQKRRLEEQ
QISEQAARARRQEEVDQLVGFFGRSVSSVFTSVSKASIGIAKTSSSLQES
AADTRTQARHVMGEIEQTAGTVQTVAAASQELSASIEEIGRQAGESSRIS
TAAMDQSDEIIKRVNELRSAAEQIGTVVELINTIASQTNLLALNATIEAA
RAGEAGKGFAVVASEVKTLAQQTGKATEDIGGQVSSIQAVAARTADAIQG
IAQTVRQVNEIAVTIASAVTQQSAATQEIARSFEQVSDTTTSVTRSMERV
NAAVTNNSQGATAVRSIAEELSQEADSLGLEVKDFLGALADLSRSDEFRT
YAVSLAASATINGQITTGQVTKLSPGFVVFSGRLGVQPGTVLEMRIDTVD
RPLKVRFVEVKEDGSYLQLPLDHAHLTYMTQILAHLGKAAA
>Rru_A3492 Periplasmic Sensor Hybrid Histidine Kinase
MNMDRSNDLAGTLPAPPSVPGPAEDGQSMPIFRWIWRSYLRSALIPLVFI
ELVFLAIYLLSHQISTSRTLESFGSAVENEFYGAAEREAALLSERLAALG
TTASVFAHQAARVLSTPCQPAPRERARLALGANGVLYSTGAPEGSAALFY
SGIIPVGPAQIDKAVCSAALDPLMRDISAVEPLVDQIYVNTWDSMNRIYP
PIDVLSQYAPHMDIPSFNFFYEADQEHNPERKVVWTDVYLDPAGRGWIAS
AIAPAYRGTILEGVVGLDVTVGTFIDRVLAAELPFDAYGLLLDRNGGILG
APKVAGEDWGAKPLTEATYGGAITKDTFVDPAFNLFARAEPADLLAALQS
QSNGVRPVTLAGKQKVVAWAKVASTGWTYLMVADRDTVFGDILRLDRLFT
VIGYLMAGGLLVFYLGFLAFLYIRVREMSVRLSGPLSALNAMIRRIASGS
YFQTAPAFDVRELDETGREVAAMGDRLGRANEELIANREELVRARDAAQA
AARAKAEFLATMSHEIRTPMNAVIGMTGLLLDGPLEPRQIDYARTIQRSG
EHLLGLINDILDFSRIDTGRLVLVDRDFSLSHEVQAVVSLCGVAASAKRL
SVRIDLDRALAPGYRGDSQRLRQILVNLVGNAVKFTDKGMVTVQGDVLKI
ENDIHWLRLRVVDTGCGIPRERFNDLFAAFQQLDGSATRTHGGTGLGLAI
SRKLARLMGGDITVSSTPGEGSVFSVVVPMVPLSRTPAPDGTLGDGDAER
GEEPPAADVPTEAAASRALVVLVAEDILENQILVQAVLEKQGHRVILAAN
GREALAKLRGADPVDVVLMDIQMPVMDGLDACRAIRGLPPEVHFSDGRPI
AGVPIIAFTADALPGDRERFLSAGMNEHLAKPLNARRLRALLGDIAAGRP
LTPRSSAAPSPRKSLEAPRRLLDPEALAQLRTSLGEDYPIYLRAAEEALR
HRARALPEALARGAFEEASQLLHGLRGTLAAFGMEAEATLCQRLRGDLAG
GAGIAIRVEARKLADQALAAADEVRGHRGLPSIDPRAPTPL
>Rru_A1901 chemotaxis sensory transducer
MGVVNKASKVRRKPFGRLVTLVRDMSISRKIGLGFGVIVILLMVLGAGGT
WGLFDAKTKVVQIQAINQAQTQVAEAYTTLLKVDAALADFLISNEATAAD
SAVGALGGALNALNEAGAILTGEDKERIAELIAQIDTLSTRIRRVIDLQS
AAEVAFSSVSNQGLSLEQRISTLSSDAFGTGSLNAIFKAEEALVKLVAAR
TAAQAFFVRPKAVPFDPIIKDLDAAAAHVTSLKRSMDDPTVLERITEAEA
LFVTFRADLLSAREAVTARVSAIEKDLVPVQRKVVQGMRKVERTTEKLQA
EMSADIDQGLQRNIVLSVAVSGGVILFAIVLSLGLGRSIGRPIGRLIASL
ERLERRDLDAPVTDTDRRDEVGRLAGALESFRGNMRIADALERDKEEQAR
QLAIHASRLEDLNRGFEGDSRALLDETLAQVARLRAIADDMATLSHQTDA
GAGDASEAAEQASRDTDSVATAAEELAASVLEISRQVQHSSDVATSASQM
AQGAVSTVDGLLLDANRIGEVVELITAIASQTNLLALNATIEAARAGDAG
KGFAVVAGEVKTLANQTSKATEEIGLRVTAVQAKTGETVAAIAAIADAIA
DVMQTAAAIAAAVEEQGSATHEIARNIQAVSGGAQTAASSAQAVRSVAAT
AQEKAGGVVEAVGRLAQQSQTLGDTIGRFLDEVRTA
>Rru_A3296 PAS/PAC Sensor Signal Transduction Histidine Kinase
MDTSPSIDQDFRTLVEVATDAIMVIGGDGTILYANDAAGELFGHRPADLL
GLPFGHPAIHGQISELDIHGRDRRRVAEMRVSSVHWEGEASHVIILRDVS
DRVRMAASLRDRLAFEQLLLEISATFARARSSERQTASAQALGLFCDYVR
AEQAFLLARTETGAFEIIAFYPAGERGNDRALSPALGEEVEACLRDNRVQ
ALVGTTLAASGDGRTDDSARWIGILPLTDGEEGFGALCLMRATPPGFGAA
AYDLESLRPAPTLFLDALRRMRLEDLLTRAMVKQASVFRQLVEGLCLVRG
RRVVQANQALADMMGYQVDDMPGLETKAFFATEESYEAVGEKGYQDVREG
RLYSAEHLFKRRTGERFWGELKGAPVEGEDNADGESVWVLRDITDLREAA
ARKQQLIDELSRSNAELERFAFIASHDLKEPVRMVASYVNLLSKRYGNSF
DGEGREFLNFALEGARRIHQMIEGILDYARIEASSPDLDAVALEGPLDRA
LASLADTLRDSEARITVQRPLPTVLAVPSEMERVFVNLIGNAVKFAKPDQ
SPHIDIMVETCPSPPKGKDQGSPLCHITIRDAGIGIPEAAREKVFDIFWR
LHGREKYDGTGLGLAIVKRIIDRRGGRIWIESREGTGTTIHILQPLAPSP
>Rru_A2361 Multi-sensor Hybrid Histidine Kinase
MTGTTGLGRRIVWWWIVGAVLAGIGLSGFAVWWVTQRNAELAETAASLEL
TRLSDAIAERITLYQYGLRGARGVIVTFGERGITREVFRGYSKTRDIGAE
FPGARGFGFIRRVPADREERFLAEARADGWPDFAIAQFTPHEGERFVIQY
IEPAQRNLKAVGLDIASEKNRREAALAAIDTGQVRLTGPITLVQASGDKS
QSFLILLPIYRTLSTPETLAERRAQAFGWSYAPLNMPEVLSGLVPNQDRL
ALTLRDVTNPAEAETVFTSNTDCAAAECVTKTLTRSIFGRVWEISVTVSP
AYGHAVQRIAPWVVVSLGIGASILAAGFAAVIGLNQARRREIAQAQARLS
TIVENSGDAIIGEALDGTIVGWNRAAEALFGYKAPEVIGKALAPLLIPAD
RMAENQSIVLSALSGEAVMAFDTQRIHADGHLFDVSMTACPVHDRLGHVV
GVANLIRDIRKRKAAEQSLLEFNAQLEKQVASRTAELEKARRALQTVLDS
VPSMIGYWDRDLHCHIANRAYCSWFNVDPSGLIGKSMRSLLGEALFTANR
PFIEAVLRGQPQTFERMIPRPNGQGVRHSLAHYIPDVVDGEVLGFYALVH
DVSELVEGRQKLDAALRENEALLRTIDEQLLCSITDRNGNIISINDNFCK
LMGYTKDELLGLDHRIMNSGLHDKTFWADVWATISAGGSWRGEVCNKAKD
GALYWLDSVLTPFFGEDGSIDRYVALRIDITDRKKAEAERNRSNTLLRSV
LASAREFSIIATDPDGVITIFNSGAEKLLGYSAEEMVGKQTPALIHLADQ
VAERGRSLSDEFGVPIEGFRVFVHRSERDGVEAQEWTYVRKDGGHLEVLL
VVTAIREDDGRIAGYLGVAQDVSRRKEFERALVLAKQAAEEASVVKGQFL
ANMSHEIRTPMNAILGMLTLVQRTALTPHQADYVCKAHSAAGSLLGLLND
ILDFSKIEAGKLHLEPHPFRLETVLRDLAVVLSGSYGDKGVEVLFDIAPH
LPDSFIGDDLRLRQVLLNLAGNALKFTDQGQVIVSVGVLAREDDRLTMRM
AVSDTGIGIAADQLASIFGAFEQAETSTTRRFGGSGLGLTITRHLVERMG
GVLRVESQPGRGSRFWFDITLPVSGEGSESAESGRPLRVLVVEDNPVAGG
ILAQTVQGLGYDCDLVQESAETKARIVAADAAGRPYDAVLLDWRMPEVDG
LTTARILREMGVTLCPQSIIMVTAYGRDVLSLAEQTGDAPFDAVLTKPVT
PGQLRDALLRRDRATSEGEATALAPRGLPTPLAGRRLLVVEDNAINRQVA
AELLAGAGAEIDLAEGGERGVMMVLRGEIAYDAVLMDIQMPDIDGFEATR
RIRADARFKALPIVAMTANASRADREACLAAGMTEHVGKPIDITATIDVL
VSLMTEGMTEGEPIAPPSPMGGTGREVPSDEPLLEDLDSIAERLGGQVDL
LRRLLPTFAERTGELLDEIEDLIGRGDWSALSMAFHTIKGSAASMGAVAL
ASHAALWEERLREDGPGTLDALRRDQALCDQMRALLAASLEALSSHLDAM
AGPYAKEPAG
>Rru_A0377 Signal Transduction Histidine Kinase (STHK), LytS
MTIGPLALVISLSQQMCVYLVVAYLLSKTPLFIPLVHVTIRLPHKAACYA
IFSLFCIMGTYFGLRIDDSIANTRAIGAVLGGMLGGPSVGLAVGLTGGLH
RYSMGGFTALACAISTTAEGLIGGLVHRYLVSRGQTGKLFQPLVVGLVTL
FAEVCQMLIIILVARPAVNAVHLVETIALPMLVANSVGAAMFMTILLDRR
TMFETQSSVFSAKALKIAARAEGALRSGFNRENSMRVARIIYEETGVGAV
AITDRDKILAFIGIGDDHHKPGMAVTSLQTLESIRENRVMYADGNEVAYQ
CSISPTCPLGAALVIPLVDEGEQVIGTIKLYEPKTRLFSTINRTLGEGVA
RLLSTQILAGRYEQQRQLLAQSEIKLLHAQVNPHFLFNALNTLSAVIRLD
PDHARHLVQSLSTFFRKNLKRTSEQVTLNDEVEQVSAYLEIELARFGDRL
SVDFNVPADLGTATLPTFSLQPLVENAIKHGTAQLLGDGRIGVSAERQGG
DLVVRVEDNAGLYERRPGGDGLGMNLVDRRIRARYGQGYGLSVECERDVV
TRVILRVPFDPSPAGVASPAFEKVGP
>Rru_A2251 extracellular solute-binding protein, family 3
MISMKKTATALFAAAGILLGGQAVTMALGVADARAETIRFATEGAFPPFN
FTDAAGKPQGFDIDIANALCAQLKAECSMVTQDWDGIIPGLLAKKYDAII
ASMSITPERQQSVLFTDAYYNNQFHFVGPKGKDFDLSKAGLKGKAIGAQR
ATVSSQWIEDTLGDTVSLNLYDTAEEAYLDLEAGRVDLLLNDTYPTYDWL
NSPAGQAYELKGESVIKDDVVGIALRKDDTALAAKLNGALKEIIANGTYA
KINEKYFPFSLLN
>Rru_A3464 transcriptional regulator with PAS/PAC domain
MARPVIVPTGVERFFGEDEIIVSKTDPRGVIVYANKIFLDIAGYCEKEVV
GQPHNILRHPGTPSSIFKLMWDRIQAGNEVFAYVCNMAKNGDHYWVLAHI
TPSFSADGAITGYHSNRRAPETRILPEIKDLYNRLLTEEETAGSPKNRIF
AGMNFIDRMLGQRGVSYDRFIHSL
>Rru_A3513 chemotaxis sensory transducer
MGSGRSVQRGDRLGEETPGAGEKGTIMLRDISIRARLFGVTGALLLLLLG
VGGLGLWGMASGQGALDDIHENRVIPLAELKQLSDLYARDVVDNTHRILG
GTVSYAEGIARLDGALAEAGRLWRGYQAKPQALGEREASERLTPLLAEAD
AAAAKLRGLLQKKDKISLLGFANRELPKAIDPVTEGLRALISLQLDLAQS
DYAESAVRQKTTTLAMLALIALAVAVGAVLSLAVLRSITRPLGALNAAVA
RLSAGETATPVPGTEARTEIAPLAGAIEQWRTTLVEESRRRAAEARERQA
RDARQQRVMAATARFEDRVAGLVTAMAEGVSGLHRAADTLGATAEQTRVR
AATVSGATATTSENVETVSAATSQLTASISEIARQVETSSESARGAVRQA
EQTNQRVKTLTEAAGRIGDVVGLITDIASQTNLLALNATIESARAGEAGK
GFAVVAGEVKTLAGQTTRATGDIAAHIATVQAETREAVDALAGIGQAITR
VEDLVAGVAAAVAQQDVATREIARSIAQTADSARAVSRTIAEVNGGAEET
GALAGAVARSATRLQADGAALDAAVRDFLGEVKQA
>Rru_A2847 Transcriptional regulators, TraR/DksA family
MAVTFPPDYRPSDDEPFMNERHREYFRQKLIQWKIELLREAEETLESLQE
GGMQEADLADRASAEMDRALELRTRDRARKLIAKIDAALMRIEDGSYGFC
EETGEPIGLRRLEARPIATLSLEAQERHERMERTHRQD
>Rru_A3560 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
MTSGVAPLPGIVSTLSAAAEAVSEALIALDADGGILVVNGAAERVFDRRR
DDLIGRSLDVVFGGDFAEAMASNLSAKVDALPPAPGGGRLLRRPGLPPLA
LHAGFSVTGDHGRPLATIVIRDLSPRADSWLETEERLGGFAASMPGIIFQ
RVAHRDGSLSYPFLSSGVHAVLGYHPAEMSVALDGCLNAIHWADRESYLR
RLRQSAQTLAICSEEFRAITREGAVKWLSGASQPRAMANGDILWDGVLVD
VTERKRAELWLEMIMDRAADGIVTINEQGVIESANAAVGTFFGYADRGEL
IGRRVEILMAEADRRQHTRHMLRYRETGDGALIGAGPRELTGRRRDGTTF
ALELALSEVRTEGRRIFIAVIRDITQRKETEGALAATRARLQTIADNVPG
LVFQRELTAEGVLRFLFVSNGVHEVLGITPEALLADGELFLGAMDPDVRA
AFRETLRQSASRLEPMEEDIKLRGRDGEERWLRGWSRPSRREDGSVVWDG
VTLDVTDRKRAEDKLTFLAYYDPLTGLGNRSLFIDRFDRARRFAESIQAW
VAVLSIGLDRFGMVNATIGHTMGDKVLIAVTRRLQQSLEAGSIVCRAGGD
RFLVLLTGLTDRADLREVVATIQDAFVPPIEVEGQQFDIGLTIGGALHPE
DGREAETLIMHADAALHRAKGGGGAFQMFTPEMGARAAHLLTIQHKLRRG
LERHEFVAYFQPQVDLRSGLITGCEALARWNSPEDGLVPPGKFIGVAEEY
GLIDAICGQVLDDSCRWLSTWRARGLPQVPVAVNISGRQFQNARQLVAMV
DQALRQSGVDPRLLELELTESSAMSDPENAIAVVNLLRERGVSCAIDDFG
TGYSSLSVLKRFPIGKLKIDRSFVMDVTTDPNDAAIVQAIIAMAHALNLR
VVAEGVETLDHLAFLREVHCDAVQGFLFARPLPGEDMALMLAGGPPQPNP
R
>Rru_A0576 chemotaxis sensory transducer
MSLRSKTLTTVLVGFFIGYGILVGIAWITQRDEAERTGRAELDLEARAQS
RIAGEFVGEVLTATRTMAGAISGLVGDDLRDREVVGRLVRETVRINPAVV
GGGTGWAADGFDGADASFPGKAFSDAKGRFVPYFYRQADGQIGFEPLVMD
DVQSTESWYGFPLREGRPTVTPPYLYPVNGVEVLMTTASAPIIGKEGKAV
AVATLDMALETIQRQIADIHPFGAGFAAVLSADGQWVAHPDTARLGRPAD
HAEVGEILAATAAGRALQDTVSDPQTGEPLLRVAVPIAFSGAPETWAFIL
SVPESAVMAGAIETRNRLIFAGLGVLALSLIGLWLLSGRLVGPITRMTAL
MHRLAAGDTGVVVTGTERGDEFGEMAKALQTFKDNALAKIALEEEGERAK
RQAEERRRADLATLADRFEREIEGLVTLVGTAVDQMTKGAGRSVERTEAN
ALYSDQAARTAEEMAADIGRVAEAVEEMARAVTGIGERVTRANAIAVEGG
SSARAAVGRVSALVGAADRIGDVVTLITTIASQTNLLALNATIEAARAGD
AGKGFAVVAGEVKTLANQTARATEQIAEQVAAIQRETADAAREIESVAGV
IGAIGDLNAQVAQAIGDQGQAVAGIGQIVVATVSGAGSLSETARGVAARS
AEGGEAARAMGRDVADLHQRVGELGKTVDAFVGSLRAG
>Rru_A2913 Two component Transcriptional regulator, Winged helix family
MRILVIEDDKEVAAHLLKGLREAGHVADSVADGRDGLFQAAGEAYDLLIV
DRMLPNVDGLTIVRTLRASGKTVPVLILSALGEVDDRVKGLRAGGDDYLV
KPFAFAELLARIDALTRRTAGSDAEQTRLRAGEVEMDLLARRVTRGSRTI
DLQPREFRLLEYLMRHADQVVTRTMLLENVWDYHFDPQTNVVDVHISRLR
RKMDEGFAQPFLETVRGAGYVLRTNGS
>Rru_A0439 extracellular solute-binding protein, family 3
MEDSVLTSRALCRGLAVVLAIGFALLSPLAGRAEQAPASPISAAEGDTLR
QVRERGYLTCGVNARLTGLGSVDPDGVWRGFDIDYCRAVAAAALGDSGRV
RFVPLDIRSRLLALTSGEVDLLSRNTTWTLERDAGQGISFVGVSLFDGPG
LLAWKDLPGDDLASLPPTARLCVQSAATAARVLPARMAAAGLSFTILPFR
SLEEARMALFTRACDGYVADRTALASLATFEAPRPDALRLLPDLLAVEPL
GPAVRDGDANWFDIARWTLFALIKAEEEGLSHDRLPAVLESTQDPELRRF
LGLDPGVGAPLGLDDAWVRRIVSQVGTYGEVFDRNLGQGSPLKLERGPNA
LRRDGGLMVAPPFF
>Rru_A2396 Putative FecR
MAVGAAGDSREDAARDRLIAEATARFLRLRTDPADAAGRADLARWLAASP
RHGEVWRALERTWRATGLLGPLAAPQSAPSPVRRPARPSKRARRLTAFAL
AASLALGIGALVGGPLWPGADYRAGAAGIAAIVLEDGSRVRLDAGSALDV
AYGPDRREVALRDGPAFFEVEPDTARPFVVRAGAVEVTVTGTAFAIDVSA
SEVGVSVEHGGVRVVSAGRSALLAPGERMRIAKADGAVVRDRVPLSAIGP
WRRGRLLVEDRALSEVVEAVERHFAGAIILGDGAMAERRVTGVFDLGDPE
RALRAAVEPLGGEIRRLGPWLLMVSGPSDPR
>Rru_A0227 conserved hypothetical protein
MSDPRLKTHVLAQAIIRRCAVRGTPAFLIRRGDADAGALFLKLNSLQGRC
VVLSQARTGAGAAAWMRATGPEPVDEATADAYLARQQRYDGDLWVVEIED
PALVPPVDEPIL
>Rru_A1787 Cyclic nucleotide-binding domain (cNMP-BD) protein
MLTPTEDGELKTALKKPIRSFVSTSCETCPLRKLSSVRAFSEEEMSFIKG
FKVADQELSAGTTLLHEGENSAFVYTVRSGWAIRYKLLEDGRRQVLNFVL
PGDLIGLQASLFSEMEHSVETLTPVGVCCFPRERFLELAQEGAGLAFDVI
WLTAREEQAISEHLLSVGQRTALERVAYVLLYLHDRLALLEKVRDGAFEA
PFSQQLLADVLGLSLVHTNKTLRKLVDRGFVRWTQGTIHLVNLADLRELA
CYPRRRPQRRPFL
>Rru_A3206 Response regulator receiver domain protein (CheY)
MGQPMAKTILIVEDNELNMKLFNDLLQASGYDTVQTNDGRKVVDLARAHR
PDLILMDIQLPEVSGLEVTRMLKDDGDLKAIPVIAVTAFAMKGDEEKIRE
GGCDGYVAKPISVAGFLQTVARFLAA
>Rru_A0755 chemotaxis sensory transducer
MQIVKDTKIGTRLLIGFGGMLVMTVILAVFGIHRVNEISHSLDVINEVNS
VKQRYAINFRGSVHDRAIALRDVTLVTSAGDADAVVATIDKLAGDYQRSA
ELMDRMFAERNDIGAEERTILGQIKQTESRTMPLVKTVIDRRRAGDLEGA
RALLMAEARPAFVEWLERINRFIDLQENANQVIAERTRAVARGFAERMIG
LCALVLVVGVALAWWTIGSIRPLKRLTASMLRLAEGDLGVDLPVARGRDE
VGEIIGAVAVFKRNAQEAAELRAEQAAMAERSERQKREALGAMAATVERE
TAQVVDEVARRTSRLNASAEDMATSAQTVSASSDSVSTSARKALSNAETV
AGAAEEMTASIREILRQMDNTTALTAQAARTGQTAETTVASLQAAVERIG
EVATLIGTIAGQTNLLALNATIESARAGDAGKGFAVVAQEVKNLANQTGR
STEEITRQIAEVQSATRAAAEAVKAMIGDIRTIDQVSASVASAVREQDQA
TAEIARSVAETAAASSEVTERIDDVAREADANGLRAQAVKEIGRDVDHSI
EALRQTLVRVVREAALA
>Rru_A2378 transcriptional regulator with PAS/PAC domain
MSRPIVTPSGVERFFGEDQIIVSKTDLKGIITYANDVFLKVAGYKEAEIL
GKPHNIIRHPDMPACVFKLLWDRIPAGHEVFAYVINMAKNGDHYWVYAHI
TPTFSASGQVIGYHSSRRVPEARILPGIKDLYAALLDEERRHASPKDGMA
AAMVLVEDLLAKTGQTYDEFIHGL
>Rru_A3132 Putative diguanylate cyclase (GGDEF domain) with GAF sensor domain
MSADRLLTCLAECSTRLDGADTWPVLMKQILALVGEASGATRTWVFQTIT
LTDQHVIQDHLFEHISEDCWQLQLRKRFRLFRTALSAPDYHDLVRDRQRG
LPSLLVTAEIAPGFLKASLERQKTAAMLSAPILVEGQWWGTIGLDDCQGG
ADWNATTIKFLQTIAGLIAGSIHRERQRVRSQQVAVMERTTGGGLWELDV
LRGDVWCSETLFHLLGYPPPCARLTIRRLLRHILPEDRALVMASARRCMR
EGLPAFRLDVRAWRHDRTLLWWELIIDVTETRPLDGFPLRMTGIVLEVND
RKTQELELARTAATDPLTGLANRRSFEALATRLLENKPGSGTLLVIDIDL
FKHINDCFGHAAGDEVLRHLAIVGRSVLRDGDLIGRLGGEEFAVLLQMDG
PEAYAVADRLCQAVREMAVTAPSWEHSSVVVKITISIGIAHPCPFEDPKF
ALSEALRRADRALYGAKKRGRNQICHDTEGRQSAISRDNRAKK
>Rru_A0524 MCP methyltransferase, CheR-type
MKPEDFDFISKLLKDKSGLVLTKDKSYLIESRLMPLARKRGFKGLDELIG
QLRRRDLALEREITEAMTTNESFFFRDSKPFDQFRQVVLPNILKARASKK
SFRIWCAAASSGQEPYSLAMILKEEAARLAGWRVEIVGTDLSTDILKKAR
SGLYSQFEVQRGMPMNLLVKYFKKKDEMWEIDAGIRAMVQYKEWNLLEDL
RPLGQFDVVYCRNVLIYFDQPTKTKVLDAAAALMPEDGVLYLGGAETVLG
ITNAFRPIPGQRGVYAVAKGENVKSLGAEA
>Rru_A0568 chemotaxis sensory transducer
MLKNISIKVRLYAGFFLVLALMGGVGLVSYSIFTSSNDKFDEFSEASEVA
LSALQLNRLVQSFDTDVSKYLDTASSEAAARLHQDQITVQQAISAFGALV
AGTPQQEAAERIAEAYRKHEDALKPAIGLVGQRVDLISTSLLPAAEGLVE
WAVDVRDKAFEAGDAPTAQHASKVIENMLRARVAADGYLSDGSEEQFNAI
WEALFAVTENLDGIPTAAQVQDLYGQYEEALNTLSGILGEITTMETALRD
AGAAITREGENVKDAALARQQIIRDATRSQLGNASSLVVWSNLVILLLGL
ALAGFIGRGISKPLGAMTAALKKLSEGDSETTIPGLGRGDELGAMAHAAQ
VFKEYNHKMEALRRDQVEAQKQAEADRHSAIRKLADDLENTVSGVIGVIG
ASAGQMEASARSMSVTAEDTARRAGDVSTITDSATHDVEEVAASAEELNA
SISEISRQVHHSSTISRDAVERASKASHRVSDLKDAAERIGEVVALITDI
ADQTNLLALNATIEAARAGDAGKGFAVVANEVKSLANQTSRATDEIGKQI
GAVQLATNEAVAAISGIVTVIGEMDQVSAAVAAAIEEQDAATRTIAQSTQ
RAASGTQQASSTMGNVTQAAANTGTAATEVLAAAGELTRQASELRTQVAR
FLAHIRKGGESA
>Rru_A1398 Response regulator receiver domain protein (CheY)
MMAKTILSVDDSASIRQMVKLTLTGAGYTVVQAADGAEGLARARDMAVDL
VVTDLNMPVMNGLDLIRELRKLPTYKGVPIIFLTTESDAAMKQEAKVAGA
TGWITKPFQQEQLVTVVRKVLGA
>Rru_A2774 chemotaxis sensory transducer
MTQTGKRSATAGGIRFGIGKRILTSFLAVAAITVGLSVLAWTSLDQSRKD
YGALVDDSLPAVKDALELARSSVVLTSMAPMLQAVRSDDERKRIFDDLRG
SHQALDQRITDLAARVDRPEIIAGLRKTAEEMRTTLDRLNGIAQSMLGTE
AVMIEDTKTIRGLETGFAAAARKLAGSAKIEVVLGARKLANMIELLQADQ
TVTGAAEVAKAGEQATQAFEASLRISADAVRSLSILAQAQRAPDLETLSS
LESAFKSGMASVSSQLSRLKSANVDADQLAQLQRLFDDTMMLGDEMPSLF
DRRASALTQVGMANDLVEESRAIAERLGILVNNLVGAVDGDIATTVEISE
ARAKTTVIIQWSVAGLAVLITVLIGWWYVGKRIIGRLLRLATAMDRIAGG
DLDTAIPDQGNDEISQMARTVAVFRDTAREAREAERRVAEERERAARLKR
EGELSLADAFDQSVGQTVQDLGGAAQTAAERADTMDQLARAVMDENRGVA
QTSEEMSGQTQAVAAAVEELDSAIEEILRQTTGSSEVSGSAVREAEAMRA
VMDSLNDGSGRIGEIIGLIEQVAAQTNLLAMNATIEAAHAGNAGKGFAVV
ASEVKNLAHQSSQSADDIRKQIAKIRADVENAVSATGRLTDIIRRNDEIV
AGIASSVEQQSAATREISRNVQMVAEGVRHISSSVTLVSDVSERSGKAAA
EVLAASQAMRGQVGVITGEIDSFLSGIRA
>Rru_A2235 Multi-sensor Signal Transduction Histidine Kinase
MCPCGLGAAMDTVHSTCDQEPIHVPGLVQPHGFLVVLDSKSGRIAQVTPG
IEAVAGVVAQRLIGEPLERVLDPRSAQRCRHRIARPEYPHLIDPFPVRAP
GGQSFSAVAHATDQADLVELWSDDQETTVEGVFGRLPFAIGHASRAASIE
DLCGRAAATVADLTGYERVMVYRFAENWEGEVIAETLNGPVESYKGQRFP
ASDIPAQARALYSRNLLRSIPDVHYRPLPLVGRSPDGRELDMTFCNLRSV
SPVHLEYLRNMGVAASFSVSLVVDGRLWGLVACHDRVPRRLSLATMGACQ
VYAETIAQQVLRLDNTRRSRHRSRTGDLIDDISVLLGSGRSLAEALDYTL
DDTLALFGASRAVISLDGRQWTAEGPLEGAPIQVPPHQRLLLSERLGGRL
RLPAELAGSFVGGVLLPLSDQPDRDFLLLGRPETLRSIEWAGRPEKQPEI
TPEGGLKIHPRTSFSLWREEVRGRSVAFDPLDRETAETLSLFLAERLAKQ
RRQQAVVALEETRQRLRDLAECSSDWLWETTGDGTLALVSDRINGLGDLR
PEELVGRKLVDLVGGGDSGGAPGVDADEIASAFDEGRAFHGLTVSLALLG
RGQWWVRLSGVPQYDGRGQLLGFRGTGTDVTPFKRLQEERVRTQRLEALG
RLAGGIAHEIGNVLQPVLTMAHYASKRLDDRDFLEAALADICEGGARAKD
IVRSVLTFARQTPAERRPLVLAPALARSVAFAAKGHPGLEIITDIPDTAG
EIAANSTELSQIVLNLVGNAADAMGGRGRVFVSLAEAPDLGRMVITIRDE
GPGMTLQTQARVFEPFFTTKPEGSGTGMGLAVVHGLVEAWGGTIGLESAP
GSGTKFVISFPINNP
>Rru_A2080 hypothetical protein
MRRPGLHPGELFSDPARLEPMDMVTLIGILVVAGLAIVLIGAMINYMSSL
VKSAYQIKIELRADLESGLQSMRDDIDRRAKWAKGEMIEETAKIRDSLTQ
QANDRTSALRESLLRAVVEARDADLTAIAAMADRVGLLDRRISSLEQETA
YRRDMTLRARHTPGTATEATPPPPPQAPAPAPTSAPSPSSPSPSSSANAR
G
>Rru_A2162 Phosphohistidine Phosphatase, SixA
MKRLLLLRHAKSDWQDPEVDDFDRPLSARGRRAGRLIGLSLARRTDPPAV
VLCSPARRTRETLALILPALYGVPVVYEPLLYVFDAGPLLNLLRGLQAET
ASVLVVGHNPALGDLTLALAGPASDPAALAKARDKFPTGALAELAIGRPW
SDLEAACARLTAFTCPRDLE