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2024-05-07 19:02:52

Gene list

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COG category: Signal transduction mechanisms
Organism: Thiomicrospira denitrificans ATCC 33889, ATCC 33889

Number of genes found: 179

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Thiomicrospira denitrificans ATCC 33889, ATCC 33889
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Tmden_0826 histidine kinasechromosome CDS857118 1590 + 0.284906
NA Tmden_0043 methyl-accepting chemotaxis sensory transducerchromosome CDS51033 1266 - 0.364139
NA Tmden_1058 response regulator receiver domain protein (CheY-like)chromosome CDS1122665 546 + 0.309524
NA Tmden_1328 diguanylate cyclase (GGDEF domain)chromosome CDS1400561 1695 + 0.310914
NA Tmden_2003 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS2084383 2313 + 0.32166
NA Tmden_0719 metal dependent phosphohydrolasechromosome CDS739518 2148 + 0.332402
NA Tmden_0968 response regulator receiver domain protein (CheY-like)chromosome CDS1013544 954 + 0.303983
NA Tmden_0965 Cache sensor signal transduction histidine kinasechromosome CDS1006354 2232 + 0.335573
NA Tmden_1938 quorum-sensing autoinducer 2 (AI-2), LuxSchromosome CDS2020959 504 - 0.400794
NA Tmden_0738 diguanylate cyclase (GGDEF domain)chromosome CDS761899 825 - 0.295758
NA Tmden_1336 diguanylate cyclase (GGDEF domain)chromosome CDS1409000 1320 + 0.315909
NA Tmden_1932 methyl-accepting chemotaxis sensory transducerchromosome CDS2016631 2049 + 0.367496
NA Tmden_0269 methyl-accepting chemotaxis sensory transducerchromosome CDS282619 1992 + 0.325301
NA Tmden_1924 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolasechromosome CDS2006674 1104 + 0.355072
NA Tmden_0316 histidine kinasechromosome CDS319119 1410 - 0.307801
NA Tmden_0086 hypothetical proteinchromosome CDS92144 705 + 0.31773
NA Tmden_1242 two component transcriptional regulator, winged helix familychromosome CDS1309760 684 - 0.304094
NA Tmden_1559 two component transcriptional regulator, winged helix familychromosome CDS1633207 675 - 0.339259
NA Tmden_1012 response regulator receiver domain protein (CheY-like)chromosome CDS1065960 330 - 0.336364
NA Tmden_0934 Histidine kinase internal regionchromosome CDS974976 1011 + 0.321464
NA Tmden_0886 metal dependent phosphohydrolasechromosome CDS918170 972 - 0.305556
NA Tmden_1991 two component transcriptional regulator, winged helix familychromosome CDS2073076 690 + 0.337681
NA Tmden_1270 diguanylate cyclase (GGDEF domain)chromosome CDS1340288 957 + 0.308255
NA Tmden_0664 two component transcriptional regulator, winged helix familychromosome CDS679389 714 - 0.344538
NA Tmden_2087 putative PAS/PAC sensor proteinchromosome CDS2180038 723 - 0.286307
NA Tmden_1513 conserved hypothetical proteinchromosome CDS1587164 1008 + 0.294643
NA Tmden_0512 cyclic nucleotide-binding domain (cNMP-BD) proteinchromosome CDS514540 684 + 0.27924
NA Tmden_1036 diguanylate cyclase (GGDEF domain) with PAS/PAC sensorchromosome CDS1090524 1284 + 0.290498
NA Tmden_0645 diguanylate cyclase (GGDEF domain) with PAS/PAC sensorchromosome CDS656677 1980 + 0.30505
NA Tmden_0984 response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS1031730 1695 + 0.330383
NA Tmden_0314 protein tyrosine phosphatasechromosome CDS318277 399 - 0.330827
NA Tmden_1556 response regulator receiver domain protein (CheY-like)chromosome CDS1629648 378 + 0.34127
NA Tmden_0380 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS382370 1971 - 0.306951
NA Tmden_0976 histidine kinasechromosome CDS1021254 885 + 0.354802
NA Tmden_1358 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS1428731 2172 - 0.313076
NA Tmden_0637 response regulator receiver domain protein (CheY-like)chromosome CDS648014 1155 - 0.338528
NA Tmden_1928 putative signal transduction proteinchromosome CDS2012565 783 + 0.347382
NA Tmden_1895 diguanylate cyclase (GGDEF domain)chromosome CDS1976155 1668 - 0.302758
NA Tmden_1927 histidine kinasechromosome CDS2010238 2328 + 0.32646
NA Tmden_0964 two component transcriptional regulator, winged helix familychromosome CDS1005476 777 + 0.306306
NA Tmden_0218 diguanylate cyclase (GGDEF domain)chromosome CDS222150 915 - 0.334426
NA Tmden_0317 two component transcriptional regulator, winged helix familychromosome CDS320521 675 - 0.351111
NA Tmden_0416 histidine kinasechromosome CDS414019 2691 - 0.333705
NA Tmden_0248 histidine kinasechromosome CDS263206 3198 - 0.356473
NA Tmden_0439 carbon storage regulator, CsrAchromosome CDS441635 231 + 0.281385
NA Tmden_0009 two component transcriptional regulator, winged helix familychromosome CDS12601 675 - 0.297778
NA Tmden_0970 response regulator receiver domain protein (CheY-like)chromosome CDS1015533 387 + 0.328165
NA Tmden_0988 methyl-accepting chemotaxis sensory transducerchromosome CDS1037393 1959 - 0.3512
NA Tmden_1171 transcriptional regulators, TraR/DksA familychromosome CDS1226703 351 - 0.358974
NA Tmden_0551 hypothetical proteinchromosome CDS555689 2028 - 0.410749
NA Tmden_0836 diguanylate cyclase (GGDEF domain)chromosome CDS867589 1464 - 0.304645
NA Tmden_1459 histidine kinasechromosome CDS1530701 1218 - 0.302956
NA Tmden_1962 diguanylate cyclase (GGDEF domain)chromosome CDS2044312 1290 + 0.337985
NA Tmden_1757 Lytic transglycosylase, catalyticchromosome CDS1839723 1416 - 0.360876
NA Tmden_0930 metal dependent phosphohydrolasechromosome CDS969134 2391 + 0.347553
NA Tmden_0989 methyl-accepting chemotaxis sensory transducerchromosome CDS1039923 2163 + 0.343504
NA Tmden_0735 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS756284 1212 + 0.29538
NA Tmden_0827 response regulator receiver domain protein (CheY-like)chromosome CDS858697 666 + 0.3003
NA Tmden_0715 diguanylate cyclase (GGDEF domain)chromosome CDS735942 1551 + 0.287556
NA Tmden_1558 histidine kinasechromosome CDS1631819 1395 - 0.296774
NA Tmden_0209 methyl-accepting chemotaxis sensory transducerchromosome CDS212550 1977 - 0.347496
NA Tmden_0966 multi-sensor signal transduction histidine kinasechromosome CDS1008578 1671 + 0.317774
NA Tmden_1243 PAS/PAC sensor signal transduction histidine kinasechromosome CDS1310427 1212 - 0.329208
NA Tmden_2088 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS2180801 1734 - 0.301038
NA Tmden_0935 transcriptional regulator, LytR/AlgR familychromosome CDS975967 699 + 0.341917
NA Tmden_1862 conserved hypothetical proteinchromosome CDS1944814 474 - 0.360759
NA Tmden_0463 histidine kinasechromosome CDS465791 1398 + 0.301144
NA Tmden_1496 methyl-accepting chemotaxis sensory transducerchromosome CDS1570241 1899 + 0.325434
NA Tmden_0750 histidine kinasechromosome CDS775673 1851 + 0.319287
NA Tmden_1127 HPPchromosome CDS1179256 555 + 0.356757
NA Tmden_0008 histidine kinasechromosome CDS10712 1893 - 0.290544
NA Tmden_0884 two component transcriptional regulator, winged helix familychromosome CDS916355 657 + 0.316591
NA Tmden_1881 PAS/PAC sensor signal transduction histidine kinasechromosome CDS1960370 1428 - 0.330532
NA Tmden_0967 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS1010370 3015 + 0.346932
NA Tmden_0971 CheW proteinchromosome CDS1015921 510 + 0.333333
NA Tmden_1672 response regulator receiver domain protein (CheY-like)chromosome CDS1756215 375 - 0.378667
NA Tmden_0983 methyl-accepting chemotaxis sensory transducerchromosome CDS1029555 2163 + 0.349977
NA Tmden_0981 methyl-accepting chemotaxis sensory transducerchromosome CDS1026451 1908 + 0.333857
NA Tmden_0626 histidine kinasechromosome CDS639212 771 + 0.30869
NA Tmden_0796 response regulator receiver domain protein (CheY-like)chromosome CDS824924 987 - 0.288754
NA Tmden_0986 multi-sensor signal transduction histidine kinasechromosome CDS1034626 1464 + 0.327869
NA Tmden_0006 GTP-binding protein TypAchromosome CDS6798 1803 + 0.378258
NA Tmden_0020 diguanylate cyclase (GGDEF domain)chromosome CDS24996 1164 + 0.323024
NA Tmden_0987 response regulator receiver domain protein (CheY-like)chromosome CDS1036103 1263 + 0.298496
NA Tmden_1296 putative transcriptional regulator, Crp/Fnr familychromosome CDS1367525 657 + 0.292237
NA Tmden_0532 histidine kinasechromosome CDS531549 714 - 0.313726
NA Tmden_1034 response regulator receiver domain protein (CheY-like)chromosome CDS1089539 363 + 0.336088
NA Tmden_0969 response regulator receiver domain protein (CheY-like)chromosome CDS1014508 987 + 0.302938
NA Tmden_0974 CheA signal transduction histidine kinaseschromosome CDS1018324 2076 + 0.362235
NA Tmden_0281 multi-sensor signal transduction histidine kinasechromosome CDS298816 1581 - 0.316888
NA Tmden_0283 methyl-accepting chemotaxis sensory transducerchromosome CDS300758 1329 - 0.360421
NA Tmden_1652 putative PAS/PAC sensor proteinchromosome CDS1737044 384 + 0.346354
NA Tmden_0044 putative PAS/PAC sensor proteinchromosome CDS52327 489 - 0.345603
NA Tmden_0885 histidine kinasechromosome CDS917139 996 + 0.312249
NA Tmden_0220 diguanylate cyclase (GGDEF domain)chromosome CDS227596 1620 - 0.321605
NA Tmden_0616 two component transcriptional regulator, winged helix familychromosome CDS624857 750 + 0.326667
NA Tmden_1011 response regulator receiver domain protein (CheY-like)chromosome CDS1065640 309 - 0.333333
NA Tmden_1555 putative CheA signal transduction histidine kinaseschromosome CDS1627186 2466 + 0.304542
NA Tmden_0139 hypothetical proteinchromosome CDS143998 225 - 0.36
NA Tmden_1196 putative diguanylate phosphodiesterase (EAL domain)chromosome CDS1257499 2076 + 0.306358
NA Tmden_1675 conserved hypothetical proteinchromosome CDS1757997 906 - 0.338852
NA Tmden_0078 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS84610 1872 + 0.313034
NA Tmden_1865 conserved hypothetical proteinchromosome CDS1947325 735 - 0.357823
NA Tmden_1458 two component transcriptional regulator, winged helix familychromosome CDS1530045 657 - 0.343988
NA Tmden_1453 cyclic nucleotide-binding domain (cNMP-BD) proteinchromosome CDS1523741 1815 - 0.330028
NA Tmden_1199 putative signal transduction proteinchromosome CDS1260976 810 - 0.358025
NA Tmden_0929 adenylate/guanylate cyclasechromosome CDS966916 2217 + 0.369418
NA Tmden_1990 histidine kinasechromosome CDS2071560 1527 + 0.314997
NA Tmden_1484 diguanylate cyclase (GGDEF domain)chromosome CDS1558169 1848 + 0.334416
NA Tmden_1626 hypothetical proteinchromosome CDS1706653 828 - 0.318841
NA Tmden_1010 signal transduction histidine kinasechromosome CDS1063760 1881 - 0.347156
NA Tmden_1312 putative transcriptional regulator, Crp/Fnr familychromosome CDS1382715 630 - 0.279365
NA Tmden_0282 response regulator receiver domain protein (CheY-like)chromosome CDS300396 366 - 0.308743
NA Tmden_0891 response regulator receiver sensor signal transduction histidine kinasechromosome CDS921474 1116 - 0.31362
NA Tmden_1154 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS1208298 2571 + 0.325554
NA Tmden_1951 response regulator receiver domain protein (CheY-like)chromosome CDS2034646 408 + 0.296569
NA Tmden_0259 histidine kinasechromosome CDS274014 1170 + 0.305983
NA Tmden_0914 histidine kinasechromosome CDS949458 984 + 0.346545
NA Tmden_1780 diguanylate cyclase (GGDEF domain)chromosome CDS1862399 1245 + 0.314056
NA Tmden_1530 CheA signal transduction histidine kinaseschromosome CDS1601913 2412 - 0.363184
NA Tmden_0972 methyl-accepting chemotaxis sensory transducerchromosome CDS1016447 1608 + 0.370025
NA Tmden_1394 transcriptional regulator, Fis familychromosome CDS1463341 750 - 0.281333
NA Tmden_0975 MCP methyltransferase, CheR-typechromosome CDS1020396 846 + 0.345154
NA Tmden_0528 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS527560 2124 - 0.3258
NA Tmden_1653 methyl-accepting chemotaxis sensory transducerchromosome CDS1737436 1119 + 0.339589
NA Tmden_0982 response regulator receiver sensor signal transduction histidine kinasechromosome CDS1028351 1134 + 0.29806
NA Tmden_1178 methyl-accepting chemotaxis sensory transducerchromosome CDS1235764 1593 + 0.332706
NA Tmden_1680 putative CheA signal transduction histidine kinases, no good domain identificationchromosome CDS1762839 405 + 0.31358
NA Tmden_0749 two component transcriptional regulator, winged helix familychromosome CDS774979 693 + 0.295815
NA Tmden_0247 two component transcriptional regulator, winged helix familychromosome CDS262552 681 + 0.32746
NA Tmden_1366 histidine kinasechromosome CDS1437706 1116 + 0.325269
NA Tmden_0027 hypothetical proteinchromosome CDS33039 417 + 0.306954
NA Tmden_1529 CheW proteinchromosome CDS1601425 492 - 0.343496
NA Tmden_0614 conserved hypothetical proteinchromosome CDS622560 456 - 0.359649
NA Tmden_1603 putative signal transduction proteinchromosome CDS1683294 798 + 0.339599
NA Tmden_1941 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS2023036 2586 + 0.320959
NA Tmden_1041 diguanylate cyclase (GGDEF domain) with PAS/PAC sensorchromosome CDS1099694 2376 + 0.281987
NA Tmden_0978 response regulator receiver (CheY-like) modulated CheB methylesterasechromosome CDS1022622 1059 + 0.406043
NA Tmden_0219 multi-sensor hybrid histidine kinasechromosome CDS223061 4359 - 0.352604
NA Tmden_0985 histidine kinasechromosome CDS1033438 1185 + 0.308017
NA Tmden_1940 MCP methyltransferase, CheR-typechromosome CDS2022179 780 + 0.324359
NA Tmden_1939 CheB methylesterasechromosome CDS2021598 582 + 0.379725
NA Tmden_1759 two component transcriptional regulator, winged helix familychromosome CDS1842463 663 - 0.346908
NA Tmden_0258 two component transcriptional regulator, winged helix familychromosome CDS273371 654 + 0.331804
NA Tmden_0837 two component transcriptional regulator, winged helix familychromosome CDS869079 810 - 0.262963
NA Tmden_0977 CheD, stimulates methylation of MCP proteinschromosome CDS1022141 471 + 0.409766
NA Tmden_0415 response regulator receiver domain protein (CheY-like)chromosome CDS413536 375 - 0.32
NA Tmden_1488 response regulator receiver domain protein (CheY-like)chromosome CDS1563944 900 + 0.291111
NA Tmden_0106 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS110736 3009 - 0.316384
NA Tmden_1925 response regulator receiver domain protein (CheY-like)chromosome CDS2007774 366 + 0.319672
NA Tmden_0613 diguanylate cyclase (GGDEF domain)chromosome CDS620391 1836 + 0.305556
NA Tmden_1035 CheC, inhibitor of MCP methylationchromosome CDS1089913 615 + 0.308943
NA Tmden_1570 diguanylate cyclase (GGDEF domain)chromosome CDS1644700 1551 - 0.337847
NA Tmden_0544 putative signal transduction proteinchromosome CDS547909 798 - 0.35589
NA Tmden_0417 putative PAS/PAC sensor proteinchromosome CDS416781 384 - 0.296875
NA Tmden_2035 diguanylate cyclase (GGDEF domain)chromosome CDS2121211 1050 - 0.337143
NA Tmden_0531 two component transcriptional regulator, winged helix familychromosome CDS530863 690 - 0.33913
NA Tmden_0663 histidine kinasechromosome CDS677913 1299 - 0.324865
NA Tmden_1926 PAS/PAC sensor signal transduction histidine kinasechromosome CDS2008143 2094 + 0.30086
NA Tmden_1520 putative PAS/PAC sensor proteinchromosome CDS1595058 444 + 0.326577
NA Tmden_1641 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS1723231 1923 + 0.296932
NA Tmden_0617 multi-sensor hybrid histidine kinasechromosome CDS625618 2655 - 0.313371
NA Tmden_1257 response regulator receiver (CheY-like) modulated CheW proteinchromosome CDS1325963 951 + 0.334385
NA Tmden_0587 conserved hypothetical proteinchromosome CDS594707 735 - 0.292517
NA Tmden_0979 histidine kinasechromosome CDS1023686 2064 + 0.317829
NA Tmden_1265 UspAchromosome CDS1334110 828 + 0.323671
NA Tmden_0808 CopG-like DNA-bindingchromosome CDS843000 438 - 0.262557
NA Tmden_0208 response regulator receiver domain protein (CheY-like)chromosome CDS210856 1695 - 0.307375
NA Tmden_1511 diguanylate cyclase (GGDEF domain)chromosome CDS1585127 1251 - 0.310152
NA Tmden_1365 two component transcriptional regulator, winged helix familychromosome CDS1437024 660 + 0.321212
NA Tmden_1646 diguanylate cyclase (GGDEF domain)chromosome CDS1731105 1743 + 0.313253
NA Tmden_1880 two component transcriptional regulator, winged helix familychromosome CDS1959697 672 - 0.361607
NA Tmden_0625 two component transcriptional regulator, winged helix familychromosome CDS638509 654 + 0.35474
NA Tmden_2015 diguanylate cyclase (GGDEF domain)chromosome CDS2098226 750 - 0.292
NA Tmden_2101 response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS2196906 2550 - 0.281961
NA Tmden_1512 cyclic nucleotide-binding domain (cNMP-BD) proteinchromosome CDS1586498 666 + 0.279279
NA Tmden_0909 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS941386 2547 + 0.318414
NA Tmden_1758 histidine kinasechromosome CDS1841162 1275 - 0.322353
NA Tmden_1531 response regulator receiver (CheY-like) modulated CheW proteinchromosome CDS1604336 942 - 0.358811