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# Carboxydothermus hydrogenoformans Z-2901, Z-2901

>CHY_1413 DNA-binding response regulator
MKTILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLII
LDLMLPEIDGMEIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVV
KPFSPREVVARVKAVLRRSSGIPEKEASSVIKQGILEIHPEAREVKVNGE
EVVLTPLEFDLLLYLVTNRGKALSREQLLANVWGYDYFGEARTVDTHVTR
LREKLQEAASYIKTVWGVGYKFEVKNGD
>CHY_1317 hypothetical protein
MLFVFSLNIQLSPSISFLTLGYGNYNVGSKHLPFLCAISKLRKQIEKEKN
AVEMIRDPVALDYWLAKQSKFLAIDGIEVVALSLNNPLIKEPGGGVIGSP
FKKLQPARGEIEFLKSDIGILTFPEGPGVALIGIDKSDFENFRKELGKLK
EVKYNFCRILDLIEKTKVKTALFISDGCGLVETGGGFYIRKFNIRKFFFL
PWGRVSGEYELELYVWQC
>CHY_0839 conserved domain protein
MATKGYKREHGLTIEQLNAVELLVMGKTDKEVAEAVGVNRVTVTKWRLYD
PYFQAELNRRRKEIWGVAVDRFRSLLLKALNTVEKALNEGDTRTAVEILR
MAGLDMTKGGGTLGTYLVGETEAEKILEELAEAKKREETFKAFSVADWEK
KSVLDELEELARRLERLQTRTGT
>CHY_1855 sigma-54 dependent transcriptional regulator/response regulator
MKETIKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLKEETFH
LAIFDIKMPGIDGIELLQRARQLDENLQVIILTGHGTIESAIGAMKLGAY
DYLTKPCNLAELEITLQKAYEKRQLLEENLGMKEVLLRDRSSKVIVGKSK
AITRVLELAKKVAASDSPVLIEGESGTGKELIVNAIHQWSSRAQQPLIAI
NSGALPAQLLESELFGYEKGAFTGAITTKIGLIESAHRGTLFLDEIGEME
LGLQVKLLRFLETGEFRRVGDIRLRKVDVRVIAATNRNLEEEVAKGNFRE
DLYYRLNVIKIRVPPLRERKEDIPLLVEYFLQKAGNGVKKELTPEALQAL
MSYDYPGNVRELFNILERGLLLSTGDKIQKEDLFGCLPREEAPKKIYTLE
EMEKRYIKQVLEAVQWNKTKAAELLGISVRNLYRKIEEYQLKK
>CHY_0092 DNA-binding response regulator
MKKVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLIL
LDLMLPGIDGFEVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYIT
KPFSPSELVARVKAHIGRYERLTGGRKNQDLLEFPGLVIDTAARRVFAGD
KEVNLTGKEFDLLLFLAKNPNRVFTKEELFERIWGMDSLGDLSTVTVHIR
KLREKIEKDPSNPQYIETIWGVGYRFSGLWPIRD
>CHY_1045 putative methyl-accepting chemotaxis protein
MRLLDAYLKVAENLKELLGDEVLLAISDKENFIWYKPAADIDLNIYPGMP
IPPDSIARQVLDSKRRIETYVTQEKSAFGKPYICKAMPIIEDGEIQGVIV
LDTSTEKRDLVQRAIGELESSIKEINKAAEELSSSATNFSGEFAALAQRA
GVISNDANEIRQLVDLINSIADKTHILGLNAAIEAARVGNQGKGFAVVAE
EIRKLAQQSKFAVKDIAGKIEKILGEILALAQSIEEFSGLSEEQTAISEE
LHSTLSNLEQMARELSRLAEKF
>CHY_2028 GGDEF/GAF/HDIG domain protein
MLNNPIPAYIRVNNLKNPLQKVTEFHQLLAKFKDPDDILREVCFYLKDLW
QALGCNIVIPKNPKYEFELKSHYSSAAKPLPENINENQGLSIYVFKEKHP
VLINDTTTSPLTNKEIVNYYGHKSAIAAPMVGKSKTLGVIIVFHKEKEFF
TIEDLELLTFFANHTAYVIENLQLLYRLEKGIYQDFLTGVYNYRYLQECL
LKIAEDQTKLPLSVIMIDLDNFKKFNDMFGHRAGDQIIKTTAKIIKSSVR
KNDLVFRYGGDEFAVLLPATDYQTALNVAQRISEKIKQYTYVIEKNRFRG
FIRASVGASTLGIAPTPQMVLDLADKAMYQIKRSRFNILNHIAIEEEILS
DFNQAEKTLFKTLKVLLSLIDFKDHYTLEHSRQVSILSYHVAKNLNLDQE
SLKIIYLAGLLHDVGKIWIDEAIINKPGPLNLLESGAIKKHPVIGAEILK
PISFLKPLIPIIYHHHEKYDGSGYPDGLSGKNIPLLARIITLADSFDAMT
STRPYREPLNFKEAILEIKKCSGSHFDPDLLDVFIKTLCQLKSETTEIFS
>CHY_0705 GGDEF domain protein
MPKTIKYRLIFFLTLTTVIVGIISFGFTHYREIKVAEELGLSASRELANL
FREQINNLANKAYADIWWSYDLAEGLLKGLPSNEYYREIENKIIKSLAAR
KGFIEVIDDQGNVIYSQGLKLAPAYFKYLVYKPAMMGSVSGFYEIADLLG
KKHITYLRAEQVLNEEGKPLGVIVVGYSLEENQVLFTELFTQELQKQKLL
PGVILYWKNKPLWHFGDVRFEPLLGEQIKKLQKENMLTEIRIIDGKRFYV
SYLPLENRNSSLLTLGVFLPADLLVRPYRISFWQGLLIYIVLLGLLVVLG
IYVIIGRQLEKPLNELMEVLIGWIEGKDLNFTEYQEKYPEYKKLFKRIYD
LKTTKEKIANQWYRLAEGVYNLGEAANDGDLVKELVFHIKSLVEVKGIKI
LLKNLKSDEYFPLYTEGQVATGHPAFCPDNGEYQDGTYCYPITLGSEKLG
FIIIAADKDKLTEEAREFLNNLILMSGPLVKLYLLKNYLAEISLRDPLTQ
AFNRRFLEDAILENRDCNYSLIFIDLDKFKEINDTYGHNAGDLVLIKLTQ
KIRENLRSQDQVIRMGGDEILIYLPNTPIELTREIANRIMELIRKEQFTV
MKDTKTVTFNVSASMGIGSCREGESFEEVLARVDKALYRAKELGRNQIVV
AAD
>CHY_2485 N-acetylmuramoyl-L-alanine amidase
MRKGCRSNLRGQALAFLLVFLFSIFFGFRLPVLAASYGVVTASTLNVRSG
PGINYAKIGVLSRGQKVEITAKTGEWFKIRYKNGYGYVSGKYISPVVGSS
RSTQASRTGIVTATILNVRTTPSTSAAIAGKLAKNTRVEIYKEQNGWYYI
KAGSIAGWVVKTYIKVTETSRGTTPTPPQSSTNTSIKTISGVYAVKATSL
NLRSGPGTSYSVIKTLPQGTKVEGLQVSGDWMKVKAGSTTGWVAKAYLVP
YVAETSRGDGLRIIKTVYPQVDPVNVFNGAGFSTGVKATISGEKSFGVLE
EKDGWYRLALAGREIGWAEKAYFSDTPVEPVHPVQIKGETAPASLTWQIT
TTANLTYTLSDDKLTAKIVLENGQIDNLTAPDLSFPVKSLTTATENGNVV
VNFAGFVPLNLTVEKINGGYNVRIFPEPVLSGKKIVLDPGHGGSDPGTIG
KVYGIKEKDVNLDIALKLKGYLEALGATVYMTRTGDTYPTLSKRVEYANG
LSADLFLSIHQNSVGSPAYYSANGTQVYYYPDPNNQAQEKALADNLMVAL
NEVLNSKNKGIYTNQGFYVIKYTEMPSALVEVGYLSNAEEEKKLSTPEYR
TKAAAALAQGITKWFLGK
>CHY_0606 DNA-binding response regulator
MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVI
LDLNLPKQDGFSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLT
KPFSPAELMLRIKAVLRRYRKGRGEEEILKYGKVAVNLKTREVLKNGEPV
ELTSKEYALLELLFKNPNRIFTKEQIMDRLWPDTFPEDPNIVSVLVRRLR
EKIEEDPSSPRIIKTVWGVGYKAEKI
>CHY_0885 conserved domain protein
MERLVTGIENFDEVLGGGIPLYSINIIAGNPGSGKTILVQNILFNAARRG
LKSLYFTTVSESQFKMVRNLADFEFFDNSFLGEQIIYRDLGLILKKEGLN
GAFAAVDDLMKKFRPDILVIDSFKALRSLVDSEKEFRAMVFELASKLAVW
ETTTFLVGEYIEEELSTLSEFAIADGIIYLYGQQERKFQKRYLRILKMRG
TGTIPGEHIFLIGKDGIKLYPRMLLSQEELVYDVEKGLGLEVRDNFGIEG
LDNLLGGGIYRGSSTLLAGATGTGKTLFSLKFALEAAQRGEKEPKC
>CHY_0581 sigma-54 dependent transcriptional regulator
MEAIKILLLGLGQGGTRFLKILGKKSNLKLMAVEKNPEALGVKIAKDLNI
PVFSTLEEGLTKAPNLIIDTTGDPQIEKTLKNLKENIPYLSGYIAKLFIS
LADELFYQEKELEAIINSAHDGLIAVNREGIITWFNSAAEKITGINRNQA
LGKYVVDAIPNTRLHVILKTGKAEINQFQDLGQAKIITSRIPLFNEFGEV
IGAFAIFKDITDMQKLAEELTNLQEIKTLLTSIIDCTQDAISVVDERGYG
LLINKAYSELTGLTEKDVIGKPATVDIAEGESVHFRVLQEKRPIKNITMK
VGPLKKEVVVNAAPLIVDGTLKGSVAVIHDVSELKRLTEEIDRLKRSLAS
SARYTFDDIIGEHPLLISAIELAKLAAQTSATVLLRGESGTGKELFAHAI
HNQSPRAKKPFIRINCAALTESLLESELFGYEEGAFTGAKKGGKKGVFEE
ANGGTLFLDEITTLSSNLQAKLLRVLQEKEIVRVGGNQPIPVDVRIIAAT
NLNLEEAVKNKTFREDLYYRINVIPINLPALRERKTDIPALARAIVQKLN
REYGRNIKFIDPEVFRYLMSYSWPGNIRELENYLGRAMLKVSLAENRLGP
EHLPKLFEETPQTSFSKTQSSDLNLKKLTREFEKSVVKEALEKAKYNKTK
AAQLLGITPRSLYNKLKEFDLL
>CHY_1906 sensory box/GGDEF domain/EAL domain protein
MNDREFHPRKKGNFMEESQKSITYLKQKEEFLSKILENEQLLIVVWTLES
GVVWFNRYTQNLFDIAIEEQLEKIDVSLIIPENLISYLKEQLDDTGERSF
RYIDEKPMVLKNGREIYIMWHNSIFSDEEGHKYIVSTGIDVTELKKTEKR
FEEANRNLLALNEELLAQQEELSAMNEELMAREEEVRQNLIEIQRQQDEL
KKSEERYRLVVEGASDGLWDWDLETDTAYISERWRDLIGFDKEVINNYCE
TWIKFIHPRDVKAVINNLRNHLEKKTPFYLCEYRIKTKDGKYIWILSRGK
ALWNKEGKAIRMAGSHTDITQRKQMESKLEYMAFHDPLTNLPRRDVFLER
LKVAMADARRNGKKLAVFFVDLDNFKIINDSLGHHTGDRLLKKIAKELTK
CVRETDTISRVGGDEFIILLPDVNSIEDTDKVAKRILELFDQPIKLNNYE
LPVTISIGIAIYPDHGKSERAILKNADIAMYTAKRKGKNGFQYFDIAMKS
EVEFANTVKRDLRLALEKNQFILYYQPLIDLKTGKIASMEALLRWQHPKK
GMISPFHFIPIAEETRQIISIGEWVLRTACRQMKEWLGMGYSGFSVSVNV
SVHQLEQPNFAKVVCDILKEIELEPRYLELEITETVLIEAVETVVENLYH
LKKAGVKIIIDDFGTENSSFRYMQKFTVDGLKIDRSFVNGIKIDVNKAII
DAIILLGHRLKLPVTAEGVETREQLECLIESGCDKVQGFYFSKPLPPDEV
IHLVQKGDQCFLISHNTQK
>CHY_1547 sigma-54 dependent transcriptional regulator
MRRLQIVTTDKEKCKACYACVRNCPVKAIKIEEQKAEVLEERCIACGNCV
RVCSQGAKKIYSFKEVVLEKIKNGGKVIALLAPSYPVSFYPLKPGEVHGK
LKAFGFTRVEEVTAGVEIILPEYGKYLKETQDYVISSACPAIVSLIEKHY
PTLVNHLAPIKSPMEALAKYIKMEEPDAFLVFIGPCIAKKNEALNFRENY
VDAVLTFKEIKELLKGVNGGDTYEYPRNFTQSFPIPGGLILSLKQRGYEI
ESQRSISVEGKEQIIETLESLTNNRTSGVLFYDLLFCRGCIDGPEIDSEL
TYIERRQYLLELSKGNKTILSKKPAGTFRVRYTVKARKLPLPTEEEIREI
LAYTDKFTPEDELNCGACGYNSCREKAIAVYQGLAEIDMCLPFLLKKTRG
EAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQG
ESGVGKEIAARTIHYLSERADKPFVAINCAAIPENLLESELFGYEEGAFT
GAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSN
TPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDD
IPLLVNRFMNEFCERRKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERA
YYLAEGNLIKPEHLPAQLTSKALSGERITKITTFKEAVAEVEKKLIIEGL
KATNYNKLACAKLLGIPRATLYQKIKEYGIEA
>CHY_1589 conserved hypothetical protein
MNQIIIATSRYGEEIEALLKIGLAEQIKNGLLNLDKYQAGKYKFLALNII
KTNLLSSTNDCFLTKVSSILAKIYVDFWEKDLISKIAAFEYPYFKREELE
RIKNNAVKILTMDREREIGKKIYEFLLENSLINLDGFILFRLQKEVSEIY
HSLDLAVEEQILEKEYQEFIKVVKCFLEIQPVKVRMVQVFWVNGYLVLVD
EHQRKVEDKFIENLLTQRQRLFLEDILISALISLAPEKIIIHRHDDSINF
DLKPIKDIFEERVEICTKCEGYREG
>CHY_0657 sensor histidine kinase
MTAFEGFFEFYVFFPEGLKLLLPVILLFLINFFGVYVASYFFRTFRVITL
KKEEQDQLNPLMLANEALPIIKQGLNVETAGKIAEIIQRISDMEAVAITD
REKVLAYVGVGCERHKIGDPIRTFATKEAIRTGELKIIDHSLKYICSVKD
CDCPLQAAVVVPLKIRGQVVGTIKLYQTKKGEMPAQTVKLAMGIAQILNL
QMEIAELDRQAQMVTKAQLEALQAKINPHFLFNTLNTIIMFNRTNPELAR
KLLIHLAKFFRQTLKKQGMFGTLKEELDYVNTYLVLEKARFRQKLRIIRD
IDRELLNYQFPVLTLQPLVENAVKHGITPKESQGTVLIRIKRDGEKINVE
IKDDGVGISPSMVGRVLEPGFGSGNGVGMSNVHERLLSLYGREAGLKIES
KLGVGTTVSFSIPALKVEEEGERENEN
>CHY_1905 HD domain protein
MTIKVNFFNFFNLIKNMFSAFDANELGLNKHHWKVAYVSYLLGDKLGLTE
FEKNDLIYLGMIHDIGVLPWGKDEQLINFFEEEEFEHCLRGYNFLKNTYF
DQYAPVILSHHDHFKGKNKTGLAGKEIPLFSRIIYLADRVAFFFQDNMHP
LLVKDKVVEKIVSGKNILFDPEIVDVFLVVAETEDFWLTLGDGDILNQCL
NIHPGQHRWLELDEVINIAQLFAKIIDHKSHFTFYHSQLIAEVAKFAGEI
FGFNLEERKALEVAGLLHDLGKLTVPEEILEKPAALSREEFSVIKQHTFY
TYYWLIDVFPEEIVRTAAFHHEKLDGSGYPFKKKGEEISLQERLLGVVDM
FVALTEDRPYRKGLEYREVKEILLNEVRANRIDRECVKILLDSYPEIITR
MQKVLETEEG
>CHY_1510 ACT domain protein
MQEKALITVIGEDRVGIIAKVATLLAEANVNILDISQTITGGLFTMIMMV
DITHCNLEFEALKKSLSDLGAQLNLKIEIQHENIFRAMHRI
>CHY_1367 C4-dicarboxylate response regulator
MIKTVIVEDDPMVLEINKNFIKEVEGFEIIAALKSGSELLNFLKNHSPEL
LILDIYLPDIDGLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVD
YIIKPFKKERLVKALLTYKNKYLKIGRKRSVQQEDIDRLFARSSAGGELP
KGLNDITLKKILSLLEETREPLAAAEVAKRAGISRVTARRYLEYLEREGL
AGKEIRYGSIGRPVNYYYLR
>CHY_1124 sensor histidine kinase
MKQKIIKKIFLVTLIVAAILLPHEATTLARLTDRFIIDSVWEGQSSKVFQ
AVLIGTGYYLMRDIGALIFIFYFFETVNKLKPILKTFLSFLLLISFYGYL
YYKFQIGDFVFGILIGCVLFFLFSGLKTPENIFWSKSFLVLQVLLAFSWL
KYSPFINKFFYSFGTPAEEVSLVAQFYGADTALNWITVIMFFIIMMTALI
STFLISIYSTQMEIISRQKENELEVERYRLQVQEARVFQELHSLVHDLKT
PLMTIQGLSSLIGLMVDSPKLQEYVQKIEQAVENVNKMISEILYDDVRKT
ITVEELINYVRAHVFPKYTGQGIFFELLDQKEKLLINHIRVARSLINVIE
NAFAATANKPDGRVTIKTYKEGNYICFEIADNGVGIPPEIQEEIWTWGFS
LKEKKSGLGLPFVKRVVENHNGYIQLHSEVNKGTTVKIFLPLGGYGESTH
N
>CHY_0716 regulatory protein, PemK family
MEIRRGDIFYANLSPVVGSEQGGTRPVLILQNDIGNLYSPTTIIAAITSQ
INKAKLPTHVEISAEESGLEKDSVILLEQIRTIDKSRLKEKVSSLNKELM
RKVNQALEISLGLVEI
>CHY_0091 sensor histidine kinase
MSLKFRLILSYLAMLVIPILLSAVASFLVGLIYIGDAGQAFNLPHGPKAF
REVFRERQETINEVKINILKQPEKALSKSFWAAEEKKLVNHQTYLVVKKG
KDLIYASELMREQKLLEKLPAFGNPEEEGAIKAPDGKRYLLKQVDFYFSD
KTPGSIYFITDVENVRKILTRFSITMLVVFLLILVATNGTLTFLVSRSIL
KPLSQLKQASEQIKNGNLDFTVKNSAKDEIGELFVAFEEMRKRLKESEEL
KKQYEENRKELIANISHDLKTPITAIKGYVEGIRDGVADSPEKLSRYVDT
IYRKILEVDGLIDELFLFSKLDLKKLPFNFEKVNLNRYLSDVAEELEFDL
RKKGIELKLHLPCQQVFVWADREKLKRVINNIVDNSVKFMDKENSQVVIN
VKDEEKRVIIEIADNGRGIPLDAIPKIFERFYRVDSARTGTSGSGLGLSI
AAKIIEEHGGEIWANSVLNEGTTISFTLKKLGEGA
>CHY_0883 HD domain protein
MLLTSFLNRFNLFAIYSYALLKYNQIIAIERVFKFFIMIEDYLKNNLPSM
RLHAFNVAYWTIEIAKKLNLPKDEREKLYYAALFHDIGKINVKNSIVNKE
GPLTPEEYEEIKEHAEFGYVITRELFDNIYPDIPFWIKWHHENYDGSGYP
EGLKKNEIPFPSRILRVANVIDVLHSPKSYKKPVTVKELVEELKRCTGKD
FDPDVVDAALDVINERIVLPMDILKSNVEKIFPALLSLRTFRDVYNFNGY
FVFNEKRSYFKSTDLNGNSVKDLWDLQSASLVVEIFNSMYEYEVEVIPVE
EHTYIISNIRPMEKKNFISILWELEAELIAASGKSLNVKVKRLSGDYLLF
AHDNSCPLDMSSLYKMKIKFEDGEELILNGIITYYYNASTNYAFYKYAFV
NIGETTRDKLFKQIFKKQIYLRSFLKKDRWIKNKAG
>CHY_1359 sigma-54 dependent transcriptional regulator
MAINPINHLSLLNILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKAL
GKNINEVLPFSGLNKVLKTGESHIGRKFKIGDNLYVVNRTPLYYKGKIIG
AIGVAQEINELKNIADELENVLALKQTLETILEAGQEGYMVLDLDKTVTH
ANKAIADLFGLKLSDIVNKPINSLTANPFFCELPESADDIKTEVVEINGR
QVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQLNSELSYYKNE
LTKYTSKQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKEL
VAHALHVESGRPGSFIKVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIG
KFELANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRV
IAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFI
EKFNKEYGTNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLVEGKVI
EKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSK
AANLLGISRQWLHKRLKYFNLLP
>CHY_0703 response regulator/ANTAR domain protein
MFGATVIIASADSNFRQMVKSAVKNLDYIVVGECADGPTALKMARNFQPD
MFIIDDHLIGVPGREIAKILSFDRQCAVVLAMEFEIDKLDEFLGEMGVVG
VVIKPLEEEQLIMTVQVTEHNYQRIKELEKEIESLKDALETRKLVEKAKG
ILMESLGISEKEAFRKIQKQSMDKRISMRAVAEAIILAYDVNQKK
>CHY_1875 sensory box protein
MGFPLSAKIVFLINVIFTIAAFILFPARLGVELPLWVFLLIPMFLLPLYL
GWSGFWLYVGYLIVVYVAAHLSGNVGVEFHTFLEMISLFSGAFTYLLYLE
KYRQNYLYFFKTVAQSPNVVIIFDEKGNIIYLNKKAMEVIGPEAEKYLNE
NLNNLSHAVLRRLEVVRKALATGSPIMNETINIKLNGKKYSFLVDVQFYD
FPGKGREMFLIARDITRMIELEEKLKATIAELEGMVVKDPLTKLYNYSYL
MEQLEVSLKFAEKYGNKIALILLDLDEFGRYNDAFGIKAGDELLCVIAEK
LNEIKPLRAFLARLGGDEFAFLIPDYNNIEEAFSFAEKVQKLLSEIDFPG
REVFPKGVIAASLGIAFYPENGKTAEELMNKAKDALYQAKQFGKNITKSY
FSVLEELSRKSGVVNEEIIVSLKTIISIINSRDKYTYGHTERVAEYAEAL
ALELGLPPEKVEEIKLGAFFHDVGKIEIPGEVLRKKTPLTGEEWELLKQH
PVFGVELIQPLKIYDKYLPYILYHHERYDGKGYPYGLKGEEIPLGVRILT
LADSFDAMTTDRPYKKGKTLDEAIEELQRCAGTQFDPELTKVFVKYLKRE
RLLGDHARQTG
>CHY_1029 methyl-accepting chemotaxis protein
MSKTLPPLPEGSFQKEKGVKASTSEALVSQAEVQKKLEAQRKQARTFAKQ
QQMAERLAVATEELSSSVAEATAAVEELRGSMEQISAGAEEARAATAESL
QAVNQIVKNITIAAENAKKGNEKGVAAEKLIHTTGESIEGLVNGVVDAAQ
RNEMAADAVAKLEAEAENIGNIVKTVVKIADQTNLLALNAAIEAARAGEH
GRGFAVVADEVRTLAEISEKAANDIRNMVNEIQSEVKAVADAINNAAKTA
KDEALKGKEVSAKLEEINRNIKELVASAENVDKMSQEMERMALEFQKGVE
EIATAAELQSGSAYEALTAIEEQVKAMTEISAASNQLANMADELKHSTDV
KKSSEELAAAAEQLSASIEEANQTSQQIMAAIEQIDEAAKKQSAATEQSN
GAVIRLEQYTQQVAGFAHRMLEETKTMVELLDANKQRVLNLIEGIKKAVE
ANRENVKMLASLSQKSRQIDKIVDTIVNVGIQTNMLAVSGAIEAARAGEY
GKGFAVVAADIRNLAQDSQKNAEQIKELVRNIQEQVAEVANEINRLGEFI
EKEAQSSQKTVDYLNQLTDDMNELLAGNEVILTGSEEIATALGQSKKAIE
QIATAAQEAASATAQASSAAQEQAAGFRELVKAIEEISALADEMQQL
>CHY_2047 DNA-binding response regulator
MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPDLVIL
DIMLPGMSGLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDY
MVKPFSPRELVARVKARLRRLEGREGKKEGIIKIKDIVIDQEKFAVYVKG
KKMDFTPKEFELLKLLASNPGKVFTREYLLEKIWGYEFLGDTRTVDVHIR
HIRQKIEDNPADPVYIETVRGVGYRFGEEKK
>CHY_0658 DNA-binding response regulator
MKIRTLIVDDEYPARQELRFLLAEIPEIEVVGEAATASEALALIRAVDYS
LLFLDIEMPGLSGLELAKEINALPHPPYVVFVTAYDEYALKAFEVNAVDY
LLKPIEPKRLKKAVEKVKKLIQENGLPKGEEVFSAYRTTGRLDRIPAEKG
GKTVLVGEQEIIYAYTEQDYVYLKTYQDKYFTRFTLKELEGRLNPTVFFR
CHRCFIVNLQKVKEIIPFFNGTYTLVVDDKEKSEVPVSRAQAKKLRKILG
L
>CHY_0425 phoH-like protein
MAKKEQRMVVADKEFFRALFGKYDENLKLIEELLPVTINLREGEILIAGE
EDAVNKAVGLVEDLYNYYLAGNPITTREIRYAFSAEKRGVLGLLGDETVY
ITPRGKKIKPKSLRQKMYLEAIKKYDIVFAIGPAGTGKTYLAVVMAVLAL
KQKEVARIILTRPAVEAGEKLGFLPGDLQEKVNPYLRPLYDSLYDILGLE
TTQKYLEKQIIEVAPLAYMRGRTLDDAFIILDEAQNTTPEQMKMFLTRLG
FGSKAVITGDTTQVDLPRGQESGLVEAEQILKPIKGINFSYFTREDVVRH
PLVQEIIEQYEKARQIKDREGTGHS
>CHY_2634 hypothetical protein
MRDIYSALENYKNDRVDEIVNHIAATSSEYKQLTCSVKIACEKIFSSFLD
NNKSWLEKYEDLVGQREALVFRFLYEQGFKDGLKIGFLLNNAIFKDEVKT
>CHY_0216 methyl-accepting chemotaxis protein
MNYNNWFYWLNLVLGGISGIVFGIIYSNFIFLLIGGILVFTNLWGYYFIY
LKEKKEFAKILEFGVAAKNKNLRELLNYQPPQKGILNELGETFKFLGEQI
YNSVKYAGEDAQTQSEIIESLTSAFEQVATGTQHQVGQIQNLTLSLEKLA
KEINEVAKLAANTEQLAQRARELTQKGVKQSEVAGQEMESISQSINDLEK
NSANIAAILEVINEIADQTSLLALNAAIEAARAGEAGRGFAVVADEVRKL
ADKSRESVMKIEEIIKDVQGKTKVAVNNTKNGVAAITSLSQAFNEINTHV
QEMTEYMAQVSEKTEIQAAASEEVSGAAQTIAAVIEEISASTQEIAATSK
KLTEINAALKEHVASHIL
>CHY_0134 signal tranducer domain protein
MEDSVLLSRYQETLSFLNLTAEDLQLMAEFKELFIQKAQEFVNKFYQHLT
KFPYLQELIKKHSTVEKLSKTQAEYFISLTSEKIDADYIKNRLAVGKKHM
EIALYPNWYIGAYRLYYEVVGELVARKYSPGTELYFKAVNAFYKRINFDI
QLAIENYIAEQLKYLAAIQEQVADAAGFISSIATKTNILALNASIEAGRA
GEHGRAFGVVAQEVRKLAQESSKVAKEITEMIKHNMEEIEKIRRQNSGMM
>CHY_0017 conserved hypothetical protein
MLNFTAVMRPEVILGAFGLNLIFFLLLLNLYIKTVKLRRELKDLLKGNSG
QNLENILLDLARNNEVLKGEVTNLKKYTEELNQRLLVAVQKVGMVRYKAL
PDLGSELSFSVAFLDANNNGVVITSLYGREQCLVYGKPVERGISTYPLTE
EEQKAIRKAMEEGR
>CHY_0372 sensory box protein
MNLTTIRRYALDILDNINDGVFVTNKKRKIIYWNKAAVEITGKTRKEVLN
KSCYEVMNFPQNDQGKCLCENNCPLLSTIKEGKAIKRYRTIFTKGEEKIT
LEVSTSPIINPLGQVLGGVAVFREIKD
>CHY_1507 putative transcriptional regulator
MDIAIFKKMLLKLKEEYEKRLLELKKSEENPFFESTQELSFYDNHPGDLG
SESFERSKDFALIDNLKLKLRQIDEAIALINQGKYGLCIDCGQKIPVDRL
FANPVAIRCVACQKRVEERTVPSIRPVEEQVLSPFMEKFNHDNTSQTLFD
GEDSWQAVANFNTRENIFYEDLPPEEENSSTDEVDSIPFEIGDDGVIYQN
FKGVDDESRPQHR
>CHY_0886 methyl-accepting chemotaxis protein
MKINKILETVSDYQKLFTEDATFIVSDLEKYLYYRPGRIDFGFKPGDKIV
EGTLMERAMKQNKKIVARVEKEQSKFGFPYIATVIPITDEEGVVGAMAVA
FSTETQDMVINMSADLARVTGEIRESATEFSTSAAELANTNQRIAGESKE
LQAEIAGIQEIVNLINIISDKTHILGLNAAIEAARVGDKGRGFAVVAEEI
RKLAQQTKFSAQDIRNKINQSLHRLNELVQSIQNLAAISEEQSAMAQQLT
AAIEEISGVAEDLKNIAFKLK
>CHY_1018 chemotaxis response regulator
MSARVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKPDV
VTMDITMPEMDGIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAID
FIVKPFQQDRILQAFEKTLKR
>CHY_2567 DNA-binding response regulator
MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLI
VLDWMMPEMSGIEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYV
VKPFSLRELSARIKTILKRLEAKTINEEIVLTEGDLTLYPHKREVFLKGK
PLDLTPTEFKLLEAFLKNPGKAYSRLELLEYAIGEAYEGYERTIDTHISN
LRKKIEKDPANPEYIQTVFGIGYKLKPRGEKDENHG
>CHY_0549 hypothetical protein
MSEKEMVLVEVNPSEIVYLDFLLEGFNGLGIGHTLDPKIARVAIYTTSSM
KAELISTLKKLPINVTLIGEE
>CHY_2195 sensory box protein
MTALKDKLILMVKELSEEKLSALERFITALERGENLLEKLYLYEKIIDSL
PDATLAIDKYGRVIVWNQAMEEMTGVKKEEILGKGDYIYAEPFFGRRKPI
CVDLVLGNFSEIGINGYEKLEKRGKVIVGEGVAPNAYGGKGACYWTLAAP
IEDDEGNLLGAVQCVRDVTEKRIIENELKYCSTRDVLTGLYNRAFFEEEV
KRMEKGREYPISVLICDLDNLKAVNDMFGHDKGDLLLKRAAEVLRNGVRQ
SDVVARIGGDEFGILLPGTSREAAEEIAQRILEKVGEYNKLHPDLPLSLS
IGVSTASKPGVSLWETLREADDAMYRNKLASGNDARVALVKALKTALMER
DFHNTERMKKVALKFGPALKLSREEMDKLVLLVEMHDIGKLGVPENVLNK
PEPLSPEERRIIERHPEIGYRIALTSGELSAIAPLILQHHERWDGKGYPQ
GLRGEEIAYLSRIMAIIDAYDAMLSPRPYRAPLTRKEVLKELLKGSGTQF
DPDLVKVFVSLFLKEEDISEKRDLKGEVS
>CHY_1866 conserved hypothetical protein
MKKQNWFKRLAAGLVIGGVLLATVPATIFAAETTTTTPAVVQTMKGYGAR
LGQTFGSMLDSIAKFLGIDTTTLITERQSGKSLAQIAKEKGKSETDLVNF
IVKERTAQLEQLVKDGKITQAQADLAKSQMVERVKANINKTTVGGNGYGK
GRGMGQGKGQFRGQGRGQAGNCIYTTPSTTN
>CHY_0135 HDIG domain protein
MVTFNRFNFIKNMSKALDLSMEGLQDHHRRVAYIAYRLGERYNLTPTQKR
DLVYLGLIHDIGILRWDANDERIRQIAENEFEHCRRGALILKNSYFDHYA
RYIFSHHDHYVGKNPSGLTGEEIPLLCRVLFLADRIAVNFNPESCILEKV
KYWREYFTKRKIFDPRLLEVFFELAEAEEFWLTLGDSDILNQRLEEIGYA
EELINLPDMIGLAELFAKLVDHKSRFTFFHSQLVGEIAEYLGKVLNFGQE
DVSFLKIAGLLHDIGKMSVPESILEKPGDLTEEEFLCMKKHSFYTYYLLN
GVFPEKIVKVAAYHHEKLDGSGYPFKKKGEELGFEERLLAVIDIFVALLE
ERPYRKGLDYREIKGIMEEMGQKNKIDRELVRVVLDNYPELQAIKKKLSE
A
>CHY_0880 response regulator/sensory box protein/GGDEF domain protein
MKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPD
LILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAY
GYVMKSATEQVLITIVEMALRLYEANVHANMYWQILEDSLNEIYIFNPET
LRFHVVNRGARKNLGYTLEELNTMTPLDLKPEFDLKSFRALLEPLLSGKE
EQIVFYTVHRRKDGSLYPVEVHLQLFDYRGEKLCLALVIDLTERKALEEE
NRRKEEQLRLMLEALPNPTYLINRERQIIALNQVAKERGAVVGDYCWHSI
HHLKTISPVERQFFENTGKPLPGTKCYFCRADEALNRKQKENCEVNLDGL
FWNIWWVPIDENTYLHYVIDVTKYKKMEEEIREQKEFLRLILDSMPAGVM
VVDAKTFRIENVNLEAAAMIGASPEEIIGKSCFEIFPESKGLCLITAVGQ
EMDWAERILHRMDGSQLPVLKIVKRLRTKSGEKLIETFIDLTERKKLEEQ
LYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFALIMLDIDHFKNV
NDRFGHAAGDLVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEKA
AGLAEELREQLSMLEIPGVGRVTASFGVTGYCPGDTLDTLLMRADQMLYT
AKASGRNCVRFSEKCPEK
>CHY_0719 response regulator
MQVLVADDQPGIRMLLKIILEQMGFGVHEAKNGQEAVEKALNIRPGLIIM
DMRMPYKSGDEAIAEIHSFLPQTDFIVMTAYTAPEVLERIDRKKVFEVVA
KPFDVEEFKMILNKYLKEKFPWKYSFV
>CHY_2097 peptidase, homolog
MSFKVVHTFFLYALFGPLFGYTLLLLIGKRLLKNNSYFWSEILTIPLLIP
VLAVIIYWGKPCPLLTLANPPLKFIGGFLCFLGDGAAKYFTPVFIFAAFY
GLHEIIRPYFTFNRFLKAHRLKKDEQLNGILAELKEKMGIKKEVFCYLAP
GNITIFTFKFDKPVVIVGEEYAKRLDFEELKAVLAHELAHIKANDSLIIS
LCQFATYLYFFVPGLKKYFEKILLFRELRADKVALGYLGKKEPLASALVK
TYKFGANASWIGFALDLGGDFEIKRMQAIIESDLKIPRRNFTYFAVMTLI
VSLSLIFLYFIC
>CHY_1858 GGDEF domain protein
MRAGRKSLAFNLLLIGGLLLTFILYFLKKDGDLIWNFFLMFQVIWAIGLS
LLFKEVSVQANTDALTGLFNRNYFNEKLYNIKTKGPISLILLDLDNFKNI
NDLYGHLAGDTVLQKVAEILKNVTRKVDIIVRWGGDEFAVVLWETTEQEA
LNIAQRIKTQIENYDFVFGQSRVRISVSIGIASMQESDLNDKDQLFKTAD
EALYLAKGKKKLITVST
>CHY_1961 anti-sigma F factor antagonist
MEKEVKNKVLFVRITGEVDLKEADRLRREVDEIIENYPVKDIVFNLKNVD
FIDSSGLGVILGRFKKIRSLGGRVYLASTNEKIKKILELSGFFRIMKGIS
REEEVWEEKAYEA
>CHY_2022 extracellular solute-binding protein, family 3/sensory box histidine kinase
MSKKGVRVIFGIILFIASFLVLAANPALAREKVIVVGDNDYPPLCYLDGN
NNPAGFDVDLIVAVARKAGIDIEIKLLPWAEARKMVEDGKADVLLGVNYT
RTRAKLYDFTEAYLENRQVIFVRSDNYVVKSFDDLRNLKVGVQRADVALD
FIGDYPDITLEYFENQQQALKALGQNEVDAVIGNYYTGLYWLQKLNLENK
IKVVGIPLSITRYGLGVKKGQNQELLKKLNGAIVKLKTTGELDSLKTKWF
GESPYEKRLYFNRIRTYVIVGIFIFTTILLFILWLNRLLQQKVERATYEL
NLAYRELAAQKDLMDKMLEHELNGIITLDENRIIKRINNSALRILGITDK
QLEGKHFSFTPLKDYFPEPFLERAYRGQTCSLNEYRVVVEGQTKFLSINF
ISIPSIRAVLINFRDVTEEKKSLELMINRDKLITVGQLVAGFVHEIKNPL
FTVKSYLELLPLKANDPAFREEVINILKNELDNVQKLINDLLNYARPQNS
KKEIVVLEEVIAPLLNLLEPQFIAKQITVFKENLGFAVYADPMQLRHVFM
NLLLNAIDAIQDKGEIKIKAAEYGDKIKIEVQDTGIGIPPQYLNQIFNLF
FTSKKDGNGIGLAICQKLIQENGGSILVDSTPGAGTTFTIFLPKGVPLTV
QDEKVG
>CHY_2046 sensory box histidine kinase
MEIGLLLLFLVNLIVLFLVEGKLLSILEGIFLAALGYIIFGAFIKEVNNK
FKLLEEFTSKWRQGQYSKVSYYNDKELGKIVDNVNHLIEQLENCKRAINE
GEKRLTAILAGIKAGVMVLDRDGRVILVNKGLENLFGKLNFTGEPKPLLE
VIRNYELEKFLKEALANLKEMTREIEFLLPNSKTILIHVTPLKDEHDQKV
GLVAVFDDITEERKLEKMRSEFIANVSHELRTPLTSIKGFLETLLDGALE
DKTIAKHFLQIMNSETERLTRLIDDLLSLSKIEAKKVDFAPKPLMLQELI
QKMKLLFKSRLEEKELSFIISLPENLPLVLADGDMISQVLINLIDNAIKY
TPAGGKIEVTAAVKGSWVEVVVKDTGIGIPEESQKRIFERFYRVDKARSR
ELGGTGLGLAIVKHIIELHNGKVWVKSKVGEGSAFGFTIPIAQTVQKEE
>CHY_0126 response regulator
MTKPSILIVDDQPGIIKLLKDALELRGYVVYTAGNTGTAKALVLEKKPLL
LILDVNLGGENSFVLARQIKDILPEGKIIFITAYQEEEILRQIRELGGEV
LVKPFSLEELYRKVQAVVSSDGRWEILSNCDTRNF
>CHY_0083 putative carbon monoxide oxidation system transcription regulator CooA-2
MLLMPLDAFRKMLARYPNLMYGLIRVLGDALKHSLDVIEQLVFMEAKIRL
ANLLYQWTFSRGIHQHDGILVHTGLTREELAYLIGATRQTLTTLLKEFEA
QQIITVYKRSILVRDIDALKKVIFQLSL
>CHY_0881 HD domain protein
MLSINITSLALSLNRNFGLYEKKEHLYRLRMALIGLLIGKKLNLSEEEMK
KIFIHSLLKGNLDSNCNIISNSIEEIICLARLVAKLLGRRNVCIFVKDKV
RKYILNEYLNVFPMTPVVMALLELMEEEAFWFNLEKEFLFLDILKMTMGW
EDNKILKEEEIKKVANLLTRLIENKDVQTREHSQRVARIALRLSEELKLS
EEQIQKVELASLIHDIGKLAIPAKILHKPGKLTEREFLLVKSHPFYTYKL
FETVDGLDEVAKWAGYHHEKLDGSGYPFKVKKEDLDIEARVIQVADITAA
LLEKRSYRDSMDKEQVIKILRLEAQNNKIDLEVSELTQRLLLEDELLKDD
ITYSIAIL
>CHY_0504 glutamine ABC transporter, glutamine-binding protein
MKKFGALFLVVVLTLGLILTACGNKQAEQTNSAQNQEQKQEQKQKIVVAS
DTSYAPFEFQDPSTGKYVGFDMDLIQAIGEAVGFEVEIKSMNFDGVLTSV
QSGTVDAAISAISITDKRKEVMNFSEPYYDSGLAIVVKGDNNTIKGIDDL
KGKRVAVQIATTGADYANELKAKGIVKEVKTFNTLPDALMELRNNGVDAV
INDWPVNAYYIKQSFSDLKMVGDKLTGESYGIAVPKSKPEILAKINEGLK
KVKESGKYAEIYEKWFGEKPKN
>CHY_0209 conserved domain protein
MQIEIRGAEKLSFRERQVVVLKEMGYTNEQVAKKLKINVSSVATLYNRAK
SKGYQVVIVIPGDHLGLFDPGDEGEEE
>CHY_0217 methyl-accepting chemotaxis protein
MKMKINNWYQWLNVLLGLTGIGAGVITENILALALGIGLGLTTIANYFLY
LKENEERKRLLQLGEAVKNRNLKELVEYTPPPKGSFKELGETFKFLGKVV
YNSIKFAGKDAKTQGEIIESLTAALEQVATGTQHQVGQIQNLTLSLEKLA
QEINEVARFALATENLARKTRELTQNGVVQSETAQREMESIKQSINELEK
NSANIAAILEVINEIADQTSLLALNAAIEAARAGEAGRGFAVVAEEVRKL
ADKSRESVKKIEEIVKDVQFKTSTAVTMTQNGVMALARLSQAFSEINANV
EEVVSHMATVSEKTGIQAAASEEVSGAAQAIAAVIEEISASTQELAATSQ
KLKEITDGLKKRVASYQL
>CHY_0605 sensor histidine kinase
MMHEIKLSQKLMLGMGVVIGFFSLLAFIWNVAETRYSYQKELLEKARVIT
SGLVATRRVIAENQDKINYDSQGHFEFKHLNPAAVGRQVAKYFNQTTGYR
LKQTRLKYRNPENAPDPVEKEMLKELAANPQKQELYRNIERDGHRYFYYM
KPLYIEEPCLDCHGEPVGVKDIAGYPKEGYKLGDFAGAISLVVPADNLQV
EFERKLKGNFLLFLAFLGTIGLFSFTVIKNTIEEPLKEIVAMTGEVATGN
FKTKVIETNSREIKELSENFHQMAQKLKELYHNLEEKVRERTHELSLANE
ELARANAFKSEIIAMVSHELKTPLTSILAFGEILLADSENLLPWQKEYLE
DIMESGQELLKQIETLLTMAKIEAGKITVTYSPVNLQQFLEQCFKFYKNK
ARSRRVSLKIKTNITGILITDEHKLKLILGNIIGNAIKFTPPGGKISVGL
RKIFGRLYIYVKDSGPGIAPEDLPNIFNKFWRKDQKVDGTGLGLTLAKDL
CELLGYEIKVKSKLGRGSSFYIVIKEGFSDV
>CHY_2566 sensor histidine kinase
MKITVKITAALLIVAVLSVLVTSFFAVKEISDSFDFYVKQNINARAKMIL
SYIGELYFAGGWEAVQAGLQMSHGRRSGGPGGPRQERIIITAPDGTVVVD
NNWEYLGQKEKDLPLKNGQEIYLNGQKIGTLYYQPFTVYGLLEESFISSV
KRANFFGGLLAVAVALVLGFFLSQRLLAPLKTLIAVVGKFSSKNLHLRAP
ETSNDEIGELARAFNRMAEALERNEKLRRQMIADIAHELRTPLSILQGNF
ELLLEKVIEADEETLRSLAEEVKRLSRLVEELRELSLAEAGELKILPVEV
EVNQFFSEVAAPFTSLAEAKSISFETTLPAKGEKYSFDPDRMKQVVYNLL
TNAFQYTGEGGKVKLEVKLLDGKLLIEVTDTGPGIPPEDLPYIFERFYRG
EKSRSRTTGGSGLGLAIAKSLVEAHGGKIWVESTVGQGTTFKVVV
>CHY_2218 DNA-binding response regulator
MITAVVVDDEPLAREELKYLLEETERVEVIGEADSGEELFEVLRDRKPDV
VFLDIEMYGLNGLDVALELLKEKDPPLIVFATAYDQYAVKAFELNALDYL
LKPFSAERVKLTLEKIEEKLRDKEIYKQKMWQSIQAIAPQQKVFIQTADK
ILPLKREEIYFVEAQGRYARLRLKNKWVMCRHSLSELEDMLGEKNFVKVH
KSFLVNFEQIKEIIPLFGGGLILRMGDDGASEVPVGRTFLKSFKEKIGLN
I
>CHY_1343 putative serine/threonine protein kinase
MGITIKEVSRISGVFGQQGEEKVAEVLKEHLPDGYKIINSYRLNYQGDSW
DIDHIVIGPNGIFVIETKNMRGRVFGGAMGNWWQEKWAGGQKEKIKIGNP
AAQVNHYAKLVKEFLRLYFPEEETRILVYPVVVFAHEEADFSKLRFTRPG
RIGKTKILSLYELPAFILSREEVSYDSDFIDKAINFLIPEDEREKTGMFK
TGLYYQNLQEQFSRRYRLEDLIGEGNFSKVYWAYDNKLDREVAVKEINLT
DLPGDIKDKIYNEAQLMAKINHENIVKLYDTFYFDDKIYLIIELVQGKTL
VEYLEEKGGMLSVKKAVNIMIQIAKALSYIHQHNIIHRDLKPENILISTD
DIVKITDFGIAQLNEEEKEEGFILGTPVVMAPEQILKTGIDQRTDIFALG
CIFYYLLTGHYPFSGTNFSELSYNILHFDPEPIRTYNSHCSLEIEKIILK
CLEKNPENRYQKVSELLQDLIKYQEQKNLGLFFNKKTFLKIALVVLGIAF
LYLFTLGTSMQNQGSAPISLNEILNKEQITLTNDNFNQVFANNYLAGAKV
KITGRILDIIGAQNGRTLCYFLLEPASLKDNKLTIALNLDPFSIFNGTKY
YQLEGFLAYSPLVENGAAKPVVIVERYKPLEPWHLFDPPIKTVEVKQTLK
RKDKEIIFEKIEFGKNETRLFITLRNLSNHPVNFNLLEPRASQKDRFYVE
ALYQNRDYPKLKDQLGPKEIVRGIIVLEKMDYQIKEAVFFLGLTMAGEEP
YIFHVRWGDENTGN
>CHY_1318 sigma-54-dependent transcriptional regulator
MCGNVNEEGVKKYLKELSNKKNVVPVFVSVFNLKGELLAFYCKVCENCKF
KESPFPLEHELLNMCFNDELKIIVESIIEEVDRLDDLVIKVKTVKISSLL
KKIKELSFLQEELEAIIESSYDGIYVSDCTGKTLRINKAYERITGIKKDE
VIGRRLDELKAEGYFSEIVYKQVVKEKRPVTILQKIKNEKEVVVTGNPVL
DNSGEVKRVVTNVRDISELNMLRRELAEVKEKSKHYQRKIVELQEKLTLF
CQAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARF
IHFNSLRKDKAFLPVNCGAIPENLMESEFFGYEPGAFTGALKTGKMGFFE
LAQGGTLFLDEVGELPLHLQVKLLRALQTKEIMRLGSTKPIKVDVRIIAA
TNRNLAKLVEEGKFREDLYYRLNVISIEIPPLRKRKEEIIPMAMEFLTRI
NEKYGSEKKFTREVLEILKEYKWPGNIRELENVIEHAYVVSQDEINVEDL
PIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKYGT
ETRAASVLGVNQSTISRKIKKYNIDVKKIIEKNNEKELS
>CHY_1333 putative sigma-54-dependent transcriptional regulator
MRKDFTEALKEIFGLVTDLPKKCLSLIPRPQVGYRVLSTPCTPTCPEAAT
CPYDLILTFNLKDEGFWVAFPKKRENNANITPALLLKFLLIVLENLQALE
QEVDNSLVKNALQFLASQLDTNIFLFDRKGQVIVSQSNSPISISTFDLWK
KLNQAGEPEGLIETTEGNFYYRAFTKNGKMAGILAWKTEPIQPEETDSYF
SKDSIFIIPGKNPRFLEIKKLVRQIAITNNTVLLQGESGTGKELFARYIH
YLSPRKDRPFIAINCAAIPENLLESELFGYEDGSFTGARRGGKPGKFELA
NGGTIFLDEIGDMPIQLQAKLLRVLEERRVERIGATVSYPVDIRIIAATN
KNLQELIDAKLFREDLFFRLNVFPVHIPPLRERRDDIPLLLDFYLKNICL
EQNKPFKIFSPEAVQILKNYHWPGNVRELKNVVAYAVSLCEGDIITPPFL
PKYLLNGSLVSTPQPKVINPGFPNLESRKLKERLEILLAEYGHSTQAKRL
IAQELGVSLATLYRWLNKYRLK
>CHY_1412 sensor histidine kinase
MINSLKLKFWLALVLLVVAATSSILWTTTIYMGQKYFSQQQENLFRAGEK
LAEYIVAERDIEKIFHQMEIMGSYLNANITLTDAVGRVIICTGRAGFPQN
SCQMWAADIIPQELVKNLLSGKKVAVRVESKLLKQDVLFTGVPVILQDRV
LFAILLQAPVKEISGNFFELIKINIFSTIIGIILATILAFWLSTSITKPL
VQIKTAAQKIANRDFSHRISYQGKDELGDIVQTINQMAAQLEKYIIAYNK
REQNRREFLANVSHELRTPLTIIQGYTEALLDGIVTDEKIREEHLKNILQ
EAERLKAMANELLDLASIEEGREKLKFEKIDLANFAQDCFNAFKTQFFEK
GIELELEVNVQDGKVVGDRSKLLRVVGNLLSNALKFTPAGGKVKFEVIEG
EKDYQIHVKDSGPGIPEQDLEKIFERFYKVDKARSSKGFGLGLAITKSIV
EAHGGQIFARNNPEGGAKFTVVLPKLPPSAGNDLPNDQ
>CHY_1125 response regulator
MRVLIIDDDEGIRYTVGEIIAFMGWEAIKAENGAIGIEKFVREKPDMVLV
DYHMPALDGLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFAL
KPIKAPDLIARLKVHARMIEINRSQEKKDQDGFLAKGINKKTFNLIVEYL
KEQKEPQTIEEITEGVGLAYPTVHRYLLYMVNEGIVSIECDYGRIGRPKN
KYKLV
>CHY_0302 sensory box histidine kinase
MRGIKGRYFYLTLLLVLPLVVQGTVMYYFLYLEIPELSEKNLTYVAVHMA
KEIEKDLTDIDINNLEIAELNEINLILTHFPDMMISFIKYPNLEIIAHYS
NKNGKLAKDNEIIGGVLTGEVKDIIIKKRYPYFGKLSLADGKAYVYLQPV
YVKGELVGFVLTHQNRNYLSVVVGEILRLTGTVLFLMLLVGIGYSLHYVF
LNDRRTIALTKSNWDLQRKLNAVLENAQTGIVLVDRDLTITYINPMAEDF
FKISFAEAVGKQYDEFIKSYIITDEEKKSSFLVHTLKTGNTVYKKTITFK
VLGEMRLGEVCTGIIQNNLGQIDGAFLFIQDITDKRQKEELAAKTLQLAA
AGEIMSELTHELKNAFMVLTGLSKLCQDGRPELKMLDEEINRLYRLTTDF
LSLTRAYRAKKERFDFQQLVVEVLALVDKEARKQKVKIETFLHYPPYLKG
DRNLLKQALLNVLLNAVEAMEGGGVLKVYLDYNVKSQEIVLTVADSGPGI
PPEILQKICQPFFTTKERGTGLGLPFTKRVVEYHLGKLMIKSEVGKGTWV
IITLPVEENIHEKVQVV
>CHY_1017 chemotaxis protein CheC
MAEVNDSLKMDALKEIGNIGIANAATALAQFLARRIDMDVPEAVVIGFDE
ILQRIGSPEELVACVFLGIKGDAPGTILFIFNQESTNKLLKLVIGTETTG
YEMDEFSASALKEICNILAGSFAQAISSLTGLTLLSEVPLFSYDMLAATL
STGLIASGAFDDQVLVIDTNLIEQGEKIKGHFFFVPKPGSLQKIFAALGL
S
>CHY_0910 transcriptional regulator, truncation
MHSLDDQARKTLSGAKVIIKYKEEKVIVDAFYEQYQHYFADKTKITLKNY
LTPTEYRLLVFLWENRGRIVSKEVIMERVLADFAGVSDESLKWHLKNLRK
KLRDLGYENIILCHKGYGYSFNKETLFNFEFD
>CHY_1376 sigma-54 dependent transcriptional regulator
MEQAVMANPDFFIADNKGLSQITDLVLAQKMREELLKILDSLQEGIEIAD
EKGEIKYINQAFTRITGIEKEERIGKNIFEVSPYGALAQAIKLMKPVIGH
RTLVGGSKAEVVSNAVPIFIDGKLSGGAVVFQTVTDILKISEQLSKTQEM
LESFSQKLSELSGCRYTFNDIIGKDEKLLEAKKIAKKAAKSDATVLLLGE
SGTGKEMFAQAIHMESSRSSKPFVKINCAAIPENLLESELFGYEKGAFTG
ATKTKMGKFELAHQGTIFLDEIGDLNLFLQAKLLRVLEDKQFERVGGIET
ITTDVRVIAATNRDLKRMVKERKFREDLYFRLKVIDIELPPLRKRNKEDI
LLIAENIIGRLNRRFGKKVKGLTPKAQELFQNYPWPGNIRELENLLERTI
ILVDDEYLDEHHFYGYFSKANEPPVLEKSFPIKKLGDIEKEVISMALEKY
GRSLSAKKMIAEKLGISLASLYNKIKRYNL
>CHY_0905 HDIG domain protein
MNFKWIIESYGEYLERISHKFQDILTEQNGAFILLVEVSESNRYVCRFCE
FAGNVPYDLKREINEKVNGSLIPGNLDWLKTLTEPRVLNKDQVQSYFPEL
NQVEVMQIIPIYVDKNSKNIMIIGYFQDLTPSSISFNVNELQNYLYIEQF
YNLIFEIIIMFNRVIEEKEPLIRGHMERVVEYADLIAGEIGREETQRLIL
QIAGAVHDVGKIMVPDFILQHIGKYTEEMRQKMQKHSEFGYELLKNLPMF
NEVAEVILYHHEHYDGQGYPKGLKGNEIPLYSRILAIADSFDAMVSERVY
KVSMGYDEALEELVNNKGKQFDPELVEAFIAGFRKTRLLNPLKYKVPDLP
KLFCRVTLAVGNQYFDGRVSYRLENSQKVFIKLYQTLSFDMKEAYEKPLT
LYFQDKGMSAYVRGHMQFYNVYNQTLIFEVKENPGFVVPEQFVSLPISRG
GLLVSGSNNIPILIVELGGNGLRFVVNKAKLKEVGLVLKENTRVTILFGL
KVEEEEQYFGFKGTIIETPKTSLNESYLVKFEDVDEKHRDRLISTLLKYQ
ISLRRRGLL
>CHY_1254 sigma-54 dependent transcriptional regulator
MEITVNIVLIAPYKNLLEIAIEVKKDFDFAFNLELGDLSEGVKIAQEWEK
KGADIIISRGGTYQLIKEAVSIPVVEIKVSPFDILRQFKGLIGYSEPIGV
AGYMNVIYGSEVIGEVLNLNLIKIEIKKETEALFQIAEAKEKGAKIIIGD
TIGACCAAQLGLKSRLIISGKEAVANALSEAFRLAEAIKSEKEKTEQIKT
IVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKKVETVIPNTRL
YEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVATFQDVAEIQN
MEQKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLIL
GETGTGKELFAQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAF
TGARKGGKAGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGD
DRLIPVDVRIICATNRNLIEMINEGKFKRDLFYRISILQIHIPSLRERKE
DIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWDYPGNVRELESIIER
ACAICEGNIIDVRDIKLYNDQDSMENKVSSQSFLEIKPLDEIEKEYIKKV
IKFTDGNLSEAAKKLGISRTTLWRKLKNFN
>CHY_2489 putative methyl-accepting chemotaxis protein
MTRITNIRDIYLSLKTKYFIAFGSIFAIIFVGIAFGYVIFFGLVNAVNQF
GSHGNLAVLHGAAKKATHNVLLLMVAMFIPMLGALIFFSRQIIKDLFEPI
KRLTKYCDVISSGDLTADAFQRKAMFGRDELDDLVKAYNTMISRNKSILS
LMQQETQKLNSSMEGILGAVEQINTGVIREAELVNNVTSIAEQLKETAEN
LAVLINQAVKETGYIQKKSEEGRQTSEETVKRIEELITKVNRAAQTSNAL
MEVAEFITEIAEQTNLLSLNAAIEAARAGEAGRGFAVVAQEVKKLADSTR
NKANEIKEELLNIHRQLQEVGKDASKAGEVVRQTAENYREFSEKAKELRH
GAEIISERTGQMQNMATHLANTAVETSSFVEETTAMVEEVGANITELGRV
VEELNQEIGKYKL
>CHY_0965 methyl-accepting chemotaxis protein
MGGFKLRLGIRAKLFILTFILASMMVIGGTGAVFSTYLVNRSHEKQNKEL
LGELQRLGELKTSLFQYFNTANDFLLFPNSQRLVEVQKTYQELKNLLTNA
RKLAHSSEETQQYDEIAAILNKSQNLLEKNATNPNFEQTQNAMNMLQTSA
RNIMHHLNKLEDTAKQEDNKAREKLLKIFKIAAGAVGGSTVLAAILAMII
GYFITNPIIVAIQKLRETVHKVEEGCLNCTVDIKQADELGELATDLNNMV
EKLNSLISTISTELENLYGISDQVASVAEQVSRGATEQAAQVQGATTAVD
EIVQGIQEAANQAANAARVSEETMAQAQTGAKTVDQLSASMEKINREIKR
LGSNISRITEFLAVIEDIAEQTSLLALNAAIEAARAGEHGRGFAVVAENV
RKLAERSAKSTKEIEQLVFEIQKSSQETFAAINDGNEMVGKNKDAFNQIL
NAVNSVVAMIEEIAKHGNEVAERANRTMEMINSISAVIQETAATTEELAA
TSHTLVETSNKIKSQVAYFNTK
>CHY_0074 EAL domain protein
MSPTEKIVPFFQPVFSVNTFSVLGYEVLARKITPQGIESLGAFFHDPQVP
PENKIKVDRFVRRRALELFKQSNKNLRLFLNIQPQWLYPFISKETNFPTL
EYLDEYGISADRVIIEISETEFSADYENLSRLIDRYRKAGCQIAVDDVGR
GFNNLERIIAIRPDFLKVDTQLVRRSIKENMARNLLETLGSFAEKSGLGL
ILEGIESAELFRLGLEIGACYYQGFFIACPAPHLTEAKDSVNFIKQEVED
YIRNEIHKRNSQYQRNEELNKLMKNFNFSNIKQSLEEKISNLIQFLPDYC
FRVYACDCYGYQRTPNFTRNLGGGWTVSGEYLNRNWSWRPYFFRGVTTAS
QLGRGISSEPYIDLETKLKVWTFCYDLGDNLYLFIDCLT
>CHY_2035 CBS/cyclic nucleotide-binding domain protein
MPQTLSHIYPFSLLPENLLEELSNSLTSRNYQPGEYIFREKEPARNGLFL
VFNGILEIVVTSERGQDLVIALRRPGEFFGETVLFSGEPYPAGIRAATEA
LIGFIPKNIFMEILNKNLPFTAAFNKILTDRLRDLYLEISRESQTDSYSP
LNIIKKASQLMNPEVVKATPGESIKTIANLMAQHQVSSVVIVDNYNRPLG
IITEHDLVRKVLAESKTPTDSLIALDIMNKNPATISPDAYYSQILLEMIK
KQVRHLLVTENETLLGIITLKDLLKSRETGTITIVNSLETASSPKEIKQG
LKDAEGVLTALVSEKAGIAEIYKIMTEFFDRAYRKAVELALTEMEKESGP
PPADFCFINMGSAGREEQYLRTDLDNGLIWDNPQEEPKIVQDYFLKLGQK
INNLLIEVGFSPCKGGVMASNPFWNGQIVHWEQKLLDWFLNLTGENIRLF
SIFLDFRPVYGNFNLAEKLKEQVLEQLSQTPIVFFHLARDEYLNKVPLNV
WHSFITPRSGPRKDMLDLKRQGTIHFVDAIRLFALREKYYSSSATLTRLK
FLETKQIFSQEEIENFQFAFETISLFRIKENLSKIKVNLTPTNLINPYHL
PRKDQMLLKEALIYAQKLQQLTATAFRVTAF
>CHY_2467 GGDEF domain protein
MEGYKKKLFLVFAGAFLFLAFARYFTPTMYRIYSHEQYLGIHTFLELITV
FVSFAIFSMVWLMREGLTGRSGRFLYVLGSLFFAVGWVDLLHALSYKGMP
LFITESSYQKATFLWLYGRFIVAFAVIIASLHLWGSTRAVVRPWFIVFTD
IVLIVIAFLFSTVYLKYVPPLFIEGQGLTSLKVSLEHLLMTLYGLGFLLV
FAKRQELKLSLITNLGYFLIFTFFSEAAFTFYKSVYDTYNLIGHLYKVLA
YIFLFRAIYLSGIITYFYNLSEMAKMSEELLKHQIDLEAILKIHGDKLQQ
LIPKAERIAIYLKEGEHTYRAGYSSGKFQEMFPERGMIYFKDLEKVFGLS
VEVFENLNNVLEMLHHKEFTPLIKEIFAHSKQVLYIPLVTDGELYGFILA
YIFRPFVKFDEDDFDTAHFFQKFATLAIVQAKRQEIMERLSYEDSLTGLH
NRRYFFEELNKTKYDADRYGEPFTVVFLDMNGLKEINDNLGHQAGDLALK
LIGQKIRENIRQSDVGARLGGDEFGIIYRKMGLEEGKKKIAELKKNFSAL
KIKKYQREFSLAVGGATYPVEAGSLEILLKLADDRMYEDKGKNRRSIEVG
KRIKYK
>CHY_0935 sensory box histidine kinase
MIFCVLISFFFLLTLILVFNQKGLFTLSIKNSKKSKILKKILSFNRLTYL
YFTILDNSPNIIIAIDKNNKVIFLNSRAEEVFGITKEEILGKNYEIFFQK
FGVLERSILMDSLKYKKTFEVENYPIEVKNCVKRFWGKSYPLFGPKGEIS
GAVLVLWDTKDKQILTRELINQEKFSVVKTIATGTAHEIRNPLTTVKGFI
QLLGQEKLNDPESKVFLNTVLQEINRIEKIISELLILGSDKGLKKTFFNL
NYLIEKVVENFTPTAYLNNISIVKNLAKELPLFYGDEESLYLAITSILNN
AFEALQKDGVIVIETFYEHGSNEIGLRIADNGPGIPEELRSKIFEPFFTT
KPEGTGLGLAICYRTIEEHGGEIRVYNNETGGATFEITLPLPLENAHTQN
SANCAG
>CHY_2001 putative sporulation protein
MKFWEFFKEMERDKLVFFVSLAIIGLVFLAWGDSPKSKTTTPELPKSSAQ
IESEISRQEKELAERLEGILGKIAGVGEVAVEVKLLRSSAKEYALNRNAG
QKITNESEKSGINRSINENTDQKEVVLIKDREGQESPVLLTEETPVVGGV
VVVAEGAGNPALKEKIVQAVASALAVPLHKIEVLEGGSGVVRH
>CHY_0709 response regulator protein
MENLKVVLGIRDYTERKRFKEILRTMGVLIVGEGEEIRALINLSSRVCPD
LVILDEKLGTTKTLPYTKIFYESRLCPVILYVEQLEWEYLEDFKKGPTLS
LLVKPVTALSLMGAIYTALTNFNTYLDLVAQKEEMEKRLEERRLIDRAKA
LLIRWENLTEDEAYRYLREESRRQNISMGKVAKKIIEKYT
>CHY_0962 HDIG domain protein
MRRIPVEYLIPGLKVGYPVMDGQGRILINAGTILTSVMINRLKKLKYSWL
YIYDGKDDFTEAFVISEMVRRRALNVVNNLYQDILQERYFAIKVANYREQ
LKEIAAEMLAELLDKKGFLLDLYDIRNLDDYTYFHSVNVALLSMATALKA
GFKHDEIINLGISGLLHDIGKTQVPWTILNKPGKLSPEEMEIIRLHPEKG
GEIVSRYLNFGSSVVQGVIQHHERLDGSGYLQGLSGDKIHKFAKIIMVAD
VYDAMTSKRVYRDPIDPKEVYEFVLALGGGEFDLNTVKSFASSIAVYPVG
AKVLLNNGFEGIVTGTPVGFPDRPVIRVIADNGRPVEPYYLSLAEEYKLM
VTKIVLYPEVANESIVQILTQR
>CHY_0140 GGDEF domain protein
MAGKTKKLSKNYSMHKVNYWQIWRVIVSLAGFILTVFYLLKGSIQPPGAF
FALLTVSFILELTAIEICGSKIKGSYVFYLVTLLLKGKGFAVVLSFLAGL
LASFLTKEEKTFPGYFFEGAKNSLGILLGSHLAGYLPGGEFFLALIYTAG
FILVDAVFMILRAFFGENAGSTKEEIFYYGLNCFLTFTAGVLLTEAIKKN
FYQALFLGLLLTEAFYLVIKINQKLLNQSLDYVTLWNISRTFHRLETPDD
MLKAMLQELKNTFSYHTGVIYTYSESLRKYIPRYLNTDFPELPGPEFHNT
LLSEMGNRKTAALIKHPQLGSIAVVPLQNRRDVFGYLVIVAPKGQNYSHS
QLRRLENISGQVALAVYNGYLYLRLKELAQKDELTGLYNRRYFLERLNEE
HLRSRRHKLNYTIVLLDIDYFKKINDTYGHDCGDLVLNDFGRFLKDTLRR
TDLSARYGGEEFVVLLPQTGKKEAYLLAERLREKVKERVLIFQGQKVKYT
VSMGLAAYPEDAEEYRELLSLADKALYQAKNRGRDKVVMVNNF
>CHY_2488 5'-nucleotidase domain/Ser/Thr protein phosphatase domain protein
MLKLQKLRFLATVLVLALIFSFVNPGLAAIFASTPKTVDLLEVTDFHGYL
KYDTTLNGQPLEQKIAAVLAKKLKDIKASNPNTVILSGGDMFQGTPISNV
LRGKPVVEFMNNVGFDAMTLGNHEFDWGLDAVIDYNTNTIKGAKFPLLAA
NIVYKADNTRPPFFKPYTIIDKNGIKIGVIGLVSTDFPNVIMPAYIAPFK
ILDPVTTANALIPEVKAAGANIVVILAHMGAFDSTLTKTDIPDNELINLA
KNINGADVIFGGHTHTIIAGKVNGIPVAVAQNNGKGFARVTLTLDENNKI
VDSTVSFVSIVNDYNTQTPVIDPEVNAIVEAAKAEVGPMFSEVIGRAAFD
LTRTQSASPFGDSLLGNWAADVTRKKVGAQIGFANNGGLRTDLKAGNITV
GDIFTLMPFDNTIYKLQMKGSTIKKVLEQAVMDGGKGIQVAGLKFEYLPT
LPSMSRVTKVTLEDGTPLDDNAVYTVATNNFMATGGDNFTAFKEAVSAED
TFILVRDAFIEDIRSKGTITSQIDNRIKPATDIYKISILATSDLHGNIFP
LDYYQNIPYDQGLAKVYTYVKQVRAQNPVILVDNGDTIQGTPLNYYFNMI
DTESEYPMMKAMGYMGYDAWTLGNHEFNFGLNTLNRIILDATNEGIAVLS
ANIVWAKDGRTYVRPYIIKPVNTPFGTVKVGILGLTTKTIPSWENPANYK
GLEFKDPIETAKYWIPRMKAQGADYIIVTFHSGEESATDVIPENQVKALA
TSVDGINAIVAGHTHRNIGMNIYTSPSGNRVIVTQPDRWGRYVSHIDLIF
VKDSNGNYKFAGTTSKTVKMDANYPADQELLAVMQPYQDKVLAYTGTKIG
TAAGDFLATGITTQDTALMDLVNEVQRYYAKADLSIAAPLSTTAKIYKGD
ITIQDIMSLYIYENFLYGIKMTGKQLKDWLEWSARYYKQVTSPTDPVVKD
PVYNIPDYNLDMLHGATYTIDLTAPVGQRIKNLKVNGKLVKDTDVFKVAI
NNYRFNGGGGFMAAAGISNTDPSIVYFDSAKEMGDDGQIRSLIIRYIQEK
GTIVPKVDNNWRISTTPVEQEKDVEIKPTPNPAPAPQYAVVINLRAYVKA
NPSASAPTVAVVSGGSRYQIVVKDGSWYKVKVGSIFGYINAKDVLVTTQP
EKIVVYKKVKVTSKSGAYIRDKAVDGKVIATVRYGTTLEVIGFAGNRYKV
KYGNKTGYIWEKLVS
>CHY_0394 transcriptional regulator, Crp/Fnr family
MENWEVLKKIPLFGELSPDDLKEIGNLLYSRRLKKGQILFSEGDPGAAVY
FLKSGRIKLYKEDREGREHILHYVEPGDIFAEVVLFSKRPYPATAEVIEP
GEVLVIPNEEMENLLKKRGEIALNLIKVLLYRLDLANQKIKELALKDSLA
RVCSVLLRYGPVINLSQQEIANLAGVSRETASRIINEFKRLGVLRAEGRS
LEIINYDKLKDFS
>CHY_0103 HD domain protein
MARKANIFEKSFHASSRALLLTDWEGNLIAANQQFYQLFQQEKIDFANFN
IFRMFPTLKATKHSLTPKKGVILQTSKNLIVKVDIDCNQSFDFRLFYFKL
LQSEVKTFKLTNLINEAKNLQSVKLVSKILEIRDPYTSGHQENVARIAVA
IAQELGCPPPVLKSIYIASLLHDVGKIGIPIEILNKPGKLLKPEFELIKT
HPLTGYNLLNDVDFDYPISEFVLQHHERIDGSGYPNGLKGDEIYLEAKII
AVADVVEAMSAHRPYRPSLGIKAALKEIEAGAGKLYDQETVAACLYLFRK
KKFTLSP
>CHY_2441 HDIG domain protein
MYEIDLTDVVIALTKALEFTNEDLGYHHERVAYIAASIGKKLNLSEKDYE
TLFWAAYLHDLGAGAKLVDREIHNLDKYDTAHANFGYELLKDVPFFTEVA
QVIKHHHTKYINFTSAEKNSPLAFLSQIIFAADQVDLYLKPNKLALLQRS
EIERFFRKNVQILFNEDVVEAFLDLSQKESFWLDLTTYYIEDRLKALRPK
TKILAGEQGLKLLTVPFARIIDAKSPFTERHSLKVAALSGQLAEIAGLPG
QKSLIEIAGLLHDIGKLSVSNKILEKNGPLNDEEYALIKTHPYYTYYLLI
QVTGFEKVAQWAGYHHEQPNGQGYPFKLTKDQLDLPSRILAVADKWVALR
ENRPYRDALSIENALDILENMAQKEIVDPEVVKLLKENIDYLEKSQEEEI
GQITGKTNEPLLS
>CHY_0212 putative stage II sporulation protein E
METKIYPFARRKSNVKAPEVKRPRKKLKLSDIIFPVLAFSLGRASLAGDL
YPFGPAFLGAAVAYLGLGEAFFLFVFLLLGQIFIIPERYIIYKFSQLLVL
FILAGILLKNLNFKKKTVVLPLVVFCVVAFFGVYFDKAFSGTPLDFIKIG
LDASFSAILSVVFFLAFPALKGGPGKIVTGEELLPLMFVIGSALIGFPGF
FLGPLEVKQTIIHLTVLLTAFSGGPGLGAAGGAVLGVILCFGNGLPLENI
GIYTFAGLLSGIFRQFGKIGALIGFLLADVVLAFYLQSLSAAKGLAYQML
AASGIFLLIPNRYLDGLKEMLDSVTKKFQLFMNQPREIARERMNECRELF
LDLGNSFLELSATLGPEVIPEFRIEEVVERFPKDTCQNCTFTRLCWEREF
FGTYHALLEMLTILENKGQLFKSDVPGFFYKRCLRIKEFLNELLFTFLME
KEKSRWQKKLYEEEQLTKSQLKGVGEIFLELNKALDLDFVYDQKNTVKIF
KRLWEENLPVETVLAKPTGGRGMVVEVKSARCSGTKPCLNKIPVILREET
GGEFVLQQKRCGQTDGGECHLNYLPMEDLEGRIGIGMAGKTGEKVSGDSY
RVVRYSPGKLAVMLSDGMGSGELARRESSACLLMVERLLSFGLSPSKALE
AVDALIRLKNRQERYLTLDLALIDLISRQVTFYKRGAVTSFLKRGAVVEK
ITGENLPLGSGIELKPREKRQILFPGDILVLMSDGLLEALGGEERVVKIL
LEDNDLSPEILAEYFLAHAKLRHQNVITDDQTVIVVRFFEKTRSERVVR
>CHY_2502 conserved domain protein
MYSIKKVTEKSTKNPRKWFGFLNEEKQFNKQKWSRRRIFINKRIKAGRIS
GISERDISAYFETRNLEKLASLRKYTRQEIRDFLDADKLTPEIARKIKRL
LNE
>CHY_0949 GGDEF domain protein
MEQNLTKGLILLLLLVFNVNSPVLILLLLTLSGLIFVYNSHLNRYLSKPM
VVTATYFLSTLYFTFNWNDFASYPLIFLLNLSLKSVLFFPAIFTGMLLST
IFYHTPFDLTSIFKPFLTIALTEVLIKVNLKEKTSQRENYSAEEVRELLN
LSYTDNLTGLYNRHFLEKEAKIIDRQTSQSNFEYAILMADIDFFKQYNDS
LGHLAGDEALKKIAGIIKNSVRKQDKVFRFGGEEFLILLPETSPEKARQI
AERIRNSVARDLELSLTISIGIGHFPQNGKSFREVLKAADSALYQAKNKG
RNTVCPLKV
>CHY_2492 HD domain protein
MYKEKYIEAMKNYFGDDTRRINHALKVLNYAERIMEGENIEGDLKKIITI
TAILHDIGIIVAEQKYNSSAGKYQEIEGPPIAREIMVKNNEDKSIIERVC
YIIGGHHTAEKNDGLDFQIIWEADLLVNIEEDGLDKNKENVKKIIEKNFK
TNTGRNIAVKTYL
>CHY_2219 sensor histidine kinase
MNELFINLIERLSVIITLAFFVSKTRLFRNILQQELTIRQKLGLILGFGL
FGIIGTYWGIPIKGAIANSRVVGPAIAGIIGGPAAGLLAGLIAGVHRAWL
GGFTAVACGISTTVEGLIAGVLARRFPEKRFNVVFGILTGMFIETLQMII
ILLLARPFEDALSLVKVIGLPMILVNGIGIGVFLLILESTVKEKEHIGAV
YAEKALNIANETLPILREGLNRETAFKVSRIILNKTDADAVALTDKNIIL
AHVGSGEDHHLSGTPIKTAATAKALNNGELTVVLNKEAIGCSNSNCKLAS
AVIAPLFIRNEVVGALKLYYNKPDKIGEFTITFIEGLSRLISTQLELSML
EHQAKLLARAELKALQAQINPHFLFNSLNTIVALCRKNPDQARELIIKLS
EYFRRNLREWEPLIPLAEELKNVELYLTFEKARFSDKLQVNLNIDDKVKE
VMVPPFAVETLVENAVKHGILPKKGGLVQINAKLQDNKAVIEIVDNGVGL
REDVKVGVGLSNLKERLRNLFREEGQFYLYSREDGGTISRLIIPLLSKEA
LR
>CHY_1969 HDIG domain protein
MVDQIIGDFHRLRFLALVGALLFFLFNSEPINKKAFLIFLIAVIYSIVLY
AYLLKKPEKRDFGYKVSFWLDCLLLTALIYYTGLGHSLFYFGYVLLVAIH
TFYYGPQFGLLTATVSTAMYFIVCYLDPEVKWFDFLFKAGFLFVMVIGVA
VVYWENYRLKKLYLEEISKLRDLTAKTQKIAQIQDLKELADFGLKMAVNI
SGALAGIVWVLDERRKNLHPIAVFGIEKKDLPWVLPAEILSSLISAENCE
AIITGESFTKLTFEKNYQKVYTVCLAGKEQRIGFLNLYGNGEFKNLDYLT
IFCGYLASQMSIVRLYEQSKELCFSITQALVMAIEAKDSYTAGHSLRVTA
IAEKIGKKLGFSLERLEKLRKAALLHDIGKIGISEKILNKPGKLLPEEYR
EIQNHPGIGVEIIKPIEQMQDIIEIIYHHHEWYDGTGYPARLKGEEIPLE
ARVLAVADAFEAMTSDRSYRKALTKEEAIAEIIKQKGKQFDPQVVEAFLE
VVKEVGG
>CHY_0082 universal stress family protein
MFKKILVGIDGSAKGDKALEMAIGLAKESGAEIHLVHVTPWPILPNVFPP
GAIAYVPESVIQELTDELKAKAEKTLRERLLRVEEAGVSGKIKVLEGEPA
SAIVNYAQEEGVELIVVGNRGISGVKELLLGSVSHKVSQLARCPVLIVK
>CHY_1856 sensor histidine kinase
MKFWKRIKIKVLAFGILMSIIPLVSLAYLNVRAAEKDLLVSIQQRNTDLV
KGIAMDIGQLISEIEDKISAAGNVFGEALLQQNRESQEKFLYIFLRDIPA
VEDISLLDERGREVARVSKREVITPQKLSQVDPELLSKEGMVKSYQTADR
RTMVSLIIPVKSLLTREIKGGFYVQVNLRPVMNTVLAKYGNQDGDIFVVN
NDGKLIAHEDFSQVLRQTPVNSSLAVRRFMEGKEYEGTLPLRYVSFNGEK
VLGVYAPIKKLGWAAVMEIPVREAYKPITALKFKFLIITFFVVVLVVITS
ILFALRFTKPIEVLEQGARRVAAGDLNFVLPKTTDDEIGQLVDAFNFMTQ
QIKQKSAELIQTEKMAALGLLAAGVAHEINNPLATVSAYAEDLLERIAEE
DVRELHRSGELARYLQVIGKQIERCKKITGSLLNFARQPAGHMIDINLNE
LLEDTLALVNHRIKQLGIQVEKEFNVDLPVVKGDLSQLQQVLLNIIGNAL
DAMETTGGRLKLVTEKREKDLVIKIIDTGTGIAQEELKRVFDPFYTTKPL
GKGTGLGLSICYGIVKEMKGDIQISSSLGKGTTVTIILPMERKEGEKDEG
NN
>CHY_1025 methyl-accepting chemotaxis protein
MIPFFAKKRENEEVVRRELTLELQDSLSILEKQIEKVIQLSEAAVLEMGQ
AAENSMNMLKNSKDLITSSLQEVLELNRANVAAISNVVEENARVLQEVKA
YLHQLIIKIDGVFRLWGKEEQEQLVELLENVTRKTRVVALNASIEAARLG
AAGRSFAVVAQEIQNLVGTTSEAIENLAEHNRAFEQKVEELSKNLDELES
YFINQLSSANEKIIHSGKISQEWGQKTKEIFQKADKALENLEEVITRGAA
NFQFQDIIAQRLNNVIKGLKLIKEYLKNKGQGELLRKIETLYTSEDEKII
HRTALNNSQERDAELLNNVEFFNQ
>CHY_1023 methyl-accepting chemotaxis protein
MKLNSLRVKILAILLLMVTIPLLVNTAFNYYEAQKVLYNKLQNTARDAAK
LGDVAIDHFLGGIQQTIDTLAQEDNAINFYDIPGCAQWFGKTLDNTRKNN
PAIMSIYIGTVRGEIYLYPKQPLPAGYDPRKRPWYQKALASPGKAVWTEP
YQDAFTGKTVVTVARLVEKNGKPVGVVAADILLDHFNDKIKEIKVGKTGY
LFAIDQKGTVLAHKDPKLLGKSFANYDFAQKMLSRDSGFFKYHYNGVDKY
LAFITSPRTGWKMAANFEAAEIGADTKTILTASIIIFLITVILLTILALF
VARYISNPIQHVVEKLNLIRSGDLTVAIEGTERNDELGVLAKSLQDTVAG
VAALVQKIREVASSVAAAAQEISASTQQIATGSQNQTSEINAIAMEMDAF
AEKAAKAAAYVSEMLKLAEETVFSATQGEKALNENFGGLEEIKAKVSDLE
KSAQAISGMLEIINEIAEQTNLLALNAAIEAARAGEHGRGFAVVAEEVRK
LAERSARATEEISAVVKEISAGMQVALKAVNEGERLGRVASESFKEIFGK
IEALDERIREISTIAQQQSEGSEKVARSLQNISAITEEISATIEENSAAT
EELAASAQELVANVEKFKV
>CHY_2106 conserved domain protein
MVNLAEEEGYDLIVLGARGLSGIKRYLLGSVSEAVVRLAHCPVLIVKSKK
>CHY_0530 putative phosphoesterase
MLLAFIGDIHGNLPALKEVLADAEMNKVEKIYHTGDLIGYGPYPNEVIEL
IRDKNIEGVLGNYDDGAANKKPTCGCDYKTAKEHEIGAKSLAFTVKSLLP
ENREYLKKLPNTIKFVIHGKNFLLFHGSPERLNEYLTPDLFPGRFNKLIE
DYPDIDVFVFGHTHYPFYFLHQGRHFLNPGSLGKPKTKDPRAVYAQVEVT
YDKLTVNFRPIPYPYDITAAAIRKKGLPEELAQIVSGNIPF
>CHY_1960 anti-sigma F factor
MKHNYFNLTIPALKENIGLVRIVVAAFAAQKDLTLPDLDDIKVAVSEAVT
NSIVHGYGNNPGEIKVNGYFTEEGMYIEVIDFGKGIEREKIREKMVLDPE
DEHPGLGFLFMQSLMDRVEIVPMERGTKVILFKRILKDNRTV
>CHY_2006 putative sporulation protein
MYLKLLGACLTVTGTGALGFYLGNRYLQRVRNLERLINLLNFLKTEIRYK
ATPLPEIFAKMANSEEGTVAKLFEIKDRTLPVNQGLKKALAEGFSQTALL
KREQEILLAFAEKIGISDLREQENLLNYTCEQLKLVLAESRQEAEKNVKL
VNYLGVLVGAFLVLLFF
>CHY_1479 putative serine/threonine protein phosphatase
MKIVGKTAKGPVRALNEDAYFIDEKKSILAVADGMGGHSGGAVASQLAVR
IIAEYFAQFRSGEITEAEKSIQEVFQIINKKIKEQQNKDANLKEMGTTLT
LGIFAGENLFIGHLGDSRAYVFRANKLLKLTQDHTYVAKMVSQGIITEED
AISHPYRHLLLKALDGANEEVDIVKFQVHPQDLYLFCTDGLLDGIKEAEL
AEFLDTNQTMALENLADELIRQALLKGSRDNITVVLARFAEEREVKK
>CHY_1697 putative prophage LambdaCh01, repressor protein
MNFGQRLRQLRTERDLTQAELAKLLSIGESTISFYESNKRQPDFDTLIKL
SNFFNVSIDFLLGRTDESNKFIQNTKTIPLLGTIRAGIPLLAEENWIEEI
ALPAGIKADFALQVEGESMIYAGIFPGDIAFFKQSETATNGQIVAAGVVE
ETWKANLKFYVKTNGKAFLRSANPKYKDIEITPQHKIIGIMTGLVRHNPP
SMTDYISLVITKDEFENSWIETIETALSLGMSPIHVKQLIEIQATLSKMI
KPNE
>CHY_2559 low molecular weight protein-tyrosine-phosphatase
MNVLFVCTGNTCRSPMAQYFFNKIVEEKGLPHEALSVGLFAFDGDPASEN
AVIAMQEEGIDLSPHKATRIFAEITQQADLILTMGKGHKEALLQLYPELE
NKVYTLKEYVGEEGDVADPFGGDIEVYRQTAQELKELIQKLIARLEKEGA
ENGEDSHRG
>CHY_1296 methyl-accepting chemotaxis protein
MKMPIGIKIGGGVILILLLFVAVAVWSLQIFDSIVTEVGDISTRIQMVDL
DHKLINAFKEANRDAEAYLLYGNEKYKNDYLQDVENFISLINKRINNCLA
EDRPKFDEVIANFNQYYDVLINQAFPLAAKGKLQDAISKAQSVSSYADAA
EKILEELILSNKENTTTSLSLIQSESQEGRWLIIILNIVSLILGIIIAFW
LTRMITKPLLLTVKEAQRIAEGDLTGGELLVKTKDELSLLVEAFNTMRAN
LRNIISTLIQTAKQVSDNSQQFANQAQQTAAGISETTAAMSEMATTVEQI
TQNTQAVSIRAEQVTAQATEGAKDVEHVMEQMKMIEESSNNASKVIEELY
KTTGEITRIVDLITQIADQTNLLALNAAIEAARAGEHGRGFAVVAEEVRK
LAEQSANAAKDIYELITNIQKETKRAVEAMATGVTEVKKGSVTVFEVGKK
FKEIVSSIEEVTRQIQDVASAAEEISAGVQNVVASTEEQTAAIEEISASS
EELASLAAELEKIAARFRV
>CHY_2083 putative membrane protein
MRERKDKLKKMFWTIIGSFFGIGAISFLAFIYKIPLLLPSLGATAVILFS
AYESPFARPKSVLGGHIISATVGVFIAHLAGSNWWSIALGVTLAIGAINY
GFFKKVFGRERNL
>CHY_0160 HDIG domain protein
MVAIKRLLDKNTIKLKLYYIIIGIIGLILFLTYFRSVFNLSGNILIAFIF
FILFEALSEKLAIKMPKVGFVSVAFGLDVAAFLIFGYKIAAIIAGFSFLL
DFGRIEKNNILFSLLTKIFNLSQIIITITLAGITYNILTKFFVLNSYITF
FSIFIFAFTYLFINVLLVCLAASLSLNLPFMYIFIDNFRGFIPNYALLAI
LGYLMALVYNSIGIPGIILFFIPLIITRYVFKLYSDLRESYLSTIRALVA
ALEAKDPYTKGHSERVSELAVEIAKEMGLNADQIDIIRHMALLHDVGKIG
ILDTVLNKKGTLDPEEKELIQEHPVLGAKIVEEIPFLKQYAGMVRHHHER
FDGTGYPDKVSGEKIPLGARIIAVADTYDAMTSDRPYRSALTKEQAMSEL
ELNAGQQHDPRVVKALLKVLERFDPREKEREAMAKAAAAEGT
>CHY_0967 cheA1, chemotaxis protein CheA
MFSDVEMAVFLDELEEKIQVLTDNLLLLEQSGEDDPKVLQEIFRAAHTIK
GSSAVMGFTKMSSLTHEIENIFDKMRNNELKPTSSLINVLFEALDALKIL
RDEIVAENAENYDTTEIIAKLKEAVAGTGAKSSETQAPKGETAEFSGDEI
EKIREFELKGYQLSEIKVYLDPAAVMKSVRAFIVLQQLKELGTVIKTVPA
EEILVKTEDFNDFIVYLATNEDEDRLQNILLTIPEVERVEISAKQLEDNI
EARNEEQKVEKTDVQDIVSEKTATVEKPAAEVKTKTSAVAPAEEKKVTQT
VRVDVQKLDTLMNLVGELVIDRTRLLSVIDKLYTLSRENNELVETLAEIS
SHVGQITTDLQDVIMKARMLPIAQVFNRFPRMVRDLAQKLNKEVEFIIEG
KETELDRNVIEVIGDPLIHLIRNALDHGIEPPEEREKLGKPRAGRLRLAA
AYLENNIVITVEDDGRGIDPDAVRKKAVEKGLISEREAEMLSDKEAIKLI
FRSGLSTAQKVNDISGRGVGMDIVKSQIEQINGEVQVESQVGKGTTFTIR
LPLTLAIIRALLVEHQGQIYAFPLNFVQETLIVGQEELRKVSDYDVMLLR
GKVLPLISLSKLFNLPEDQEQKQWYFVVILGTGNHRLGVIVDNLLGEQEI
VIKSLGEYLGQVKGLSGATILGDGRIGLIIDARGILQENEIGELNVAV
>CHY_1033 cheA2, chemotaxis protein CheA
MVLSDLRETFVFEAQELLEQLEPLILDLEINSSEETINALFRIAHTLKGS
AGIAGINSVKEFTHYLETVLEALRSHEIEISSDVVDLLLEAFDHLGELIT
ALTLGEERPYNKDIAEKLAGLITATNESTLPAQETNSLATVPLLNKSHLL
KLTASDCAKLLKAKAKKQNLYQISLDFSPNFFYFGHRLEYVLEDLKALGN
LVGKYYFWREVPNWTDFSPENLYLNFELYLATKKSPKDIEDVFLFIASEE
NSVRIAEITATDLEEFIKGEVDSQGLRKNYEKLTLVLQEIAEYNDREQIK
EALNRLLALFKDSAFSDNPWLAGGLVALIETIAELVESDWEKAQSIKQQV
LEIAFSILNEVTEQNYVETNLLTVLTDFYEFIGGDEGETEIEVDEKIQQK
AEKVEISLSYVEELLKQLLEGLRQVKGEIKEPVYQAAAKAINNVEKYLGI
DQTEWEGSLTFEQLTARLQFLLELISVPQEEEKPAIEESKETKEKVAQDT
KELEQENLAKAKRKSQALKISQELADKLLALAGELIIAKNSLPYLVKKLE
MLGQMEVARELKDKALYIDRLARDFQDSLMELRLLPVENIFKRFPRFVRD
TAKQLNKQVNLVLKGEETKLEKDILEELYEPLLHLVRNSLDHGLEEIEER
ITGGKPATGLLELAAYSQGNKVIIEVKDDGRGINREKVLKKARENGLITA
EEASRLRPEQVYELIFKPGFSTKDEVTDISGRGVGMDVVKQKVNALGGQV
EVFSEEGKGTTIRLILPISMATTEVLKFTVGGKLFGIPLYTVRETVNVPV
KEIKSFKQKPVVVIRNNVIPLVNLAKTLGLKEKEQEEVKIIILHYGFALI
VDDLQGKEEVIIKPLTGELSHLSLYEGASILGDGSILLILAPTGLMGGEM
>CHY_0968 cheB1, protein-glutamate methylesterase CheB
MSRYKLFIVDDSALIRLRLKTSLALWPEIQIVGEAENGQEALKKIPLVKP
DVVTLDLEMPVLDGLSTLKELNKVYPVPVIMLSSLTTHGAKATIEALENG
AVDFVPKDGDWNKVVSELKEKIKIAVLAKKRPKPFTGGTLNPKNVILGKN
GRQLVVIGASTGGPPALREIIPKLPQTFPVPIVIIQHITRGFSKPLADQL
ARVSRLKVKEAEKDEQLLPGTVYVAPAGYTFKIDKQGGSLTAKIIEPVEY
LPAHFYPSVDEAMLSAAEVTGSKTIGVLLTGMGKDGALGMKAIKERGGYT
IAQDEETSVVYGMPKAAIDIGGVSRVLPLSAIAEEIAANI
>CHY_1031 cheB2, protein-glutamate methylesterase CheB
MSKIRVLIVDDSALMRKYLREILEQDPEIEVIAVARNGREAVEKALELSP
DVITMDINMPEMDGLTAIQYIMLHRPTPIIVISSLTQKGALTTFEALELG
AVDYVAKPDGTVSLKIKEVAEEILQKVKAVAKSRGVVRLKARKERPFVQE
VPKTRPVSPDTSFKKLILIGVSTGGPKALMEIIPRLPGNLDASVVIIQHM
PEKFTASFAARLNNYSELYVKEAEDGESLERGKVLVARGGINLKLERKLG
INVVRVRYTPLPRETIYWPSVDVAFRSALTVIEPHRIIAVLLTGMGDDGA
QAMVEIKQKGGYTIAESEETAVVWGMPREAIERGGASEILPVYQIADRIV
ELVR
>CHY_1015 cheD, chemotaxis protein CheD
MELQVGIADYKLGSSPVKIVTYGLGSCVGVSFYEPRLKLGALLHIMLPDS
TQFSGKLKPEKFADTGIPLVVRELEKQGARKSSLEVKMVGGAQMFSGPGA
QTVMNIGERNIEMCRKVIARMGLKLVAEDVGGNKGRTMILDTATGNVTVK
IIGNIVKVI
>CHY_1016 cheR1, chemotaxis protein methyltransferase
MNFAEFKAEVYKRYGIDLNQYKENQVQRRLNLFLEKSGLKDFGNLLLAMD
KDSKMFEKFIDTLTINVTEFFRDPKIFFKLYEKYLPEFKGKGNLKIWSAG
CSTGAEPYSVAIFLEELGFKNYRLDASDLDENILKAAREGKFGPEALKNV
PREWITKYFDREGEVYQVKAALRQKVNFKRQNLLKDSFDKGYHLILCRNV
IIYFTKEAQDGLYRKFSESLAPQGILFIGGSEVIFNPEKYRLIRLEPCFY
RRLG
>CHY_1028 cheR2, chemotaxis protein methyltransferase
MNFVEYQNLAEYLYQKTGIKFEDTKYDFVRRRVEERIKKLGFKSFREYFF
HLKYGDKGEEFQLLINILTINETYFFREYSQLKCFAEEVIPELIQKKTVK
HIKVWSAGCSTGEEPYTLAIILKEMLEGTGFTFQVDATDINSRVIEHARK
RLYTKRSVKDVPDVYLAKYFRPRGEVYELSAEIARYVNFQLLNLLDEIEM
SKMSGYDAIFCRNVLIYFDDKSRREVALHFYRALNPGGYIFLGHSESMSR
ITSVFKLKKFKNAIIYQKPGA
>CHY_0966 cheW1, chemotaxis protein CheW
MAENLTNKSEAQIVIFTLNQQQYGVDIAQVYEIIRMTDITKIPNTPYFVE
GVINLRGKIIPVIDLRKRLGMPEAERDKATRIIVVDVDGITVGMIVDSVM
EVFRLNDVEIESTPSMINDIDSSFIQGIAIKDERMIILLDLNRVLKGEEK
EALANM
>CHY_1030 cheW2, chemotaxis protein CheW
MDDARGQLITFHLGKERYGINLNYVQEIIRPPVILKVPMTPEYFLGLANL
RGEILPILDGRRKLQLPPNELSDSSRVVVLKLAQEKIGLLVDRMAEVVDL
EGAVFEEIANAQVNTRLVSRVVRLPHTEELIMEIKPEGIFEKKLDQVSRG
QKSFELTEVNESQEIAQENSSLEQLIGFKLGNEEFSLPIAAVQEIVRVPE
IISKTPGLPAYVEGIITLRNNTLPIINLRLFLGLERKEYDEKTRIIVLNL
SKEEGSYLFGLVTDEVTEVLRVQKSDIDDVPSYLANDAGELINGVCKLNS
GQRLIYTLVPEKLLAESKLQLEAKNEAEQREVISELMSQENQFVIFGLDT
GEYGVEIGNVQEIIHVPEITSIPQAPYFVEGIINLRGAILPVLNLRKKFN
LQLNSEREAERIIVVDYQGLKLGLMVDTVREVLKINEKEIEKTPALLNDE
IRQEFISGIAKINGGERLILLLDLKHVISREEKEQIEEALDIVQN
>CHY_1026 cheY1, chemotaxis protein CheY
MKKILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKEKFDLII
TDLNMPEMDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATA
WITKPFTPEQLLGVVEKVAR
>CHY_1032 cheY2, chemotaxis protein CheY
MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEALEKVLNGEFDLMTV
DVNMPKMDGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLV
KPVLPEQIISYAMLLTGS
>CHY_1835 cooA-1, carbon monoxide oxidation system transcription regulator CooA-1
MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKS
GRVRVYLAYEDKEFTLAILEAGDIFCTHTRAFIQAMEDTTILYTDIRNFQ
NIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAEFLVQAAMD
TGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQR
TLLLKDLQKLKEFSSGV
>CHY_0975 csrA, carbon storage regulator
MLVLNRKVNQKIIINGEIEITVLAVDSGRGQVKLGISAPQHYSIYREEIW
REIEKENKEAVGESIEKINFDM
>CHY_2217 cstA, carbon starvation protein A
MSALELIIGAALILVLAYRFYGSFLAAKVLTLDEMRKTPAEKYNDGKDYV
PMNKWVAFGHHFAAIAGAGPLVGPVLAAQFGYLPGTLWILIGSVLAGAVH
DMVVLFASIRHGGKSLSEIAKKEVGPVAGVATGIAVFFLIILTMAGLGLV
VVNALFKNPWGVFTIAMTIPIAIFIGLYMHKIRPGKIGEASLIGVILVLL
AVFLGPYVKNSFLAPYLTLSDKTLEILLPAYGFLAAALPVWLLLAPRDYL
SSYMKIGTILALALGIIIVNPQIQMPAFTKFIHGGGPIIGGKVWPFISIT
IACGAISGFHALVSSGTTPKMIANEKDIKIVGYGAMLTEAFVALMALIAA
TTLMPGDYFAINTKPEIFKTLNMPVVHLPELSKLVGEDVAGRPGGAVSLA
VGMANIFASIPGLKHLMAYWYQFAIMFEALFILTTIDAGTRVARYIAQDL
LGMIYEPIKESKSTVLAVVLSAFVSFTWGYLIYGGDIKTIWPVFGVANQT
IGVLALAIGTSMILQKSQKRIYALTTFLPMTFLFVTVMDAGFINLTKVYL
PQGQMVPAVLVAIMLSLSIIVMVSSIIKWLNILSKPQQPEVAVEN
>CHY_1378 lexA, LexA repressor
MKNSLLSHQEKKIISFIKQYLNENGYPPTIREICQGVGLSSPSTVHHHLK
NLESKGYLQRNPTKPRALELVAEKAPEELLSIPLLGNVAAGYPTLAIENA
EEEMQIPKSLFPEKELFALRIKGDSMIEEGILPGDVIIVKKQEVAENGDI
VVAYLEGEVTVKKFWKDSVNGVIKLIPANSKYEPIIINRETKILGKVIGL
LRRY
>CHY_1200 prkA, prkA protein
MEFLEKLEAYKKRERELAWEGSFKEYLDIVKKRPYVAQLAHSRIYNMIKS
YGIEETEEGKKYRFFASELFGLDKTLAKLVEEYFHPAARRLDVRKRILLL
MGPVSGGKSTLVTLLKRGLEKYSRTEEGALYAIKGCPMHEEPLHLIPKEL
REDFEKEFGVYIEGELCPRCQVMLEEEYQGNIEEVRVERIFFSEEKRIGI
GTFSPSDPKSQDIAELTGSVDFSALPKYGAESDPRAYRFDGELNIANRGI
MEFQEMLKCDEKFLWNLLSLSQEGNFKAGRFALIYADELIVAHTNEAEYK
AFISNKKNEALLSRMIVIKIPYNLKVSEEVKIYEKLIKQSDLTNIHIAPH
ALRVAAMFSVLSRLKESKKQGMDLIKKMKLYDGEHVEGFMPKDVAELQNE
VEEEGMSGVDPRYVINRLSSALIKTDTACINPLDVLRALKDGLDQHPSIT
KEEKERYLNLVSLVRKEYDEIAKKEVQKAFVYSFEESARNLFNNYLDNVE
AYCNGTKLKDPITDEELDPDEKLMRSIEEQIGISETAKKSFREEILIRLS
IYARKGKVFDYNAHERLKEAIEKKLFADLKDVVKITTSTKTPDVQQLKKL
NEVGERLINHHGYCPVCANELLKYVGSLLNR
>CHY_2223 relA, GTP pyrophosphokinase
MLSLEALLKKIKNYNNNMDEELIKKAYNFAAEAHAGQKRASGEDYITHPL
AVAFILAGLQMDDETIAAGLLHDVVEDTAYTIEDIAREFGEEVANLVDGV
TKLSRIEFKNKEEQQVENLRKMFLAMAKDIRVILIKLADRLHNMRTLKYH
NPEKQKEIARETLEIFAPLAHRLGIYRIKWELEDLAFRYLDPDNYYDIVE
KIAKTRAKREQYIQQVISILEEKLKSYNIKAKIEGRPKHLYSIFQKMREQ
QKDFSEVYDVMAVRVIVESVRDCYTVLGIIHTMWIPVPGRFKDYIAMPKS
NMYQSLHTTVIGPFGEPLEIQIRTFEMHRTAEYGIAAHWRYKEGGKGDKK
FDEKLSWLRQILEWQRELKDAREFMETLKVDIFSDSVFVFTPKGDVVELP
AGSVPIDFAYRIHTDVGNRCVGAKVNGRLVPLDYQLKNGDIVEIITKQGA
APSRDWLKIVKTSHAKGKIKSYFKKTQREELALRGRELIEKEIKKLGLNP
EEYSLEKISEVVKKLNFHSLEDLFAAVGDGTVTPNTVLNKIREGLPRTEK
SIEERVIKESKATLNKPTRGLVVRGEADLMVRLAQCCMPVPGDPIVGYVT
RGRGVSVHHTNCRNVEYFRRHEPERLVEVNWEGAIELPFTVRLEIRGHDR
AGFLNDILGVLAEQKISANYVSGRSTKNGGAVVDLALEVKNINQLKQITD
KLEKVRGVTEVYRVNK
>CHY_1978 spo0A, stage 0 sporulation protein A
MDPIRIVIIDDNREFCELLKEFINQQEDFFLAGIAHNGVDGLEVIAQQKP
DIVVLDIIMPHLDGIGVLEKLTEFEDRPKVILLTAFGQESITQKAVELGA
DYYILKPFDFSVLAARIRQLAQGTVASKPITASNTTSVLSSQLPKTKNLE
LLVTNIIHEMGVPAHIKGYHYLRDAILMVTKEVNLLGAITKELYPMIAQK
YHTTPSRVERATRHAIELAWDRGNIELINKYFGYTIDVERGKPTNSEFIA
IIADRLRLEAKVS