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COG category: Signal transduction mechanisms
Organism: Thiobacillus denitrificans ATCC 25259, ATCC 25259

Number of genes found: 162

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Thiobacillus denitrificans ATCC 25259, ATCC 25259
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Tbd_1269 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulationchromosome CDS1333954 2118 + 0.675165
NA Tbd_2094 hypothetical proteinchromosome CDS2185603 558 - 0.682796
NA Tbd_1287 Two component Transcriptional regulator, Winged helix familychromosome CDS1355283 699 + 0.685265
NA Tbd_1495 Metal dependent phosphohydrolase, HD regionchromosome CDS1585581 1215 - 0.658436
NA Tbd_2271 Response regulator receiver domain protein (CheY)chromosome CDS2342437 567 + 0.687831
NA Tbd_0531 Possible PTS IIA-like nitrogen-regulatory protein PtsNchromosome CDS556823 456 - 0.633772
NA Tbd_1516 hypothetical proteinchromosome CDS1603840 363 - 0.592287
NA Tbd_1806 Periplasmic Sensor Signal Transduction Histidine Kinasechromosome CDS1908016 1860 + 0.680645
NA Tbd_2705 PhoH-like proteinchromosome CDS2786675 960 - 0.676042
NA Tbd_1622 chemotaxis sensory transducerchromosome CDS1707478 1719 - 0.645724
NA Tbd_2549 chemotaxis sensory transducerchromosome CDS2624763 2124 - 0.655838
NA Tbd_0019 Two Component Transcriptional Regulator, Fis familychromosome CDS19966 1275 + 0.672157
NA Tbd_2093 Putative Sigma E regulatory protein, MucB/RseBchromosome CDS2184647 957 - 0.664577
NA Tbd_1743 Two Component Transcriptional Regulator, LuxR familychromosome CDS1830866 630 - 0.688889
NA Tbd_1598 CheW proteinchromosome CDS1683463 954 + 0.640461
NA Tbd_1750 Multi-sensor Signal Transduction Histidine Kinasechromosome CDS1840872 1392 + 0.68319
NA Tbd_1735 universal stress proteinchromosome CDS1820773 906 - 0.698676
NA Tbd_0135 Periplasmic Sensor Signal Transduction Histidine Kinasechromosome CDS144248 1368 - 0.723684
NA Tbd_1616 CheD, stimulates methylation of MCP proteinschromosome CDS1698122 609 - 0.619048
NA Tbd_2212 Putative diguanylate cyclase (GGDEF domain)chromosome CDS2290719 1506 - 0.686587
NA Tbd_1480 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS1565966 3039 - 0.666996
NA Tbd_0197 Two Component Transcriptional Regulator, Fis familychromosome CDS212222 1350 - 0.652593
NA Tbd_1660 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS1743752 2097 - 0.658083
NA Tbd_0616 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS645161 2025 - 0.653827
NA Tbd_2501 PAS/PAC Sensor Signal Transduction Histidine Kinasechromosome CDS2573303 1092 - 0.671245
NA Tbd_0730 Transcriptional Regulator, Fis familychromosome CDS772372 1167 - 0.667524
NA Tbd_0503 putative glutamate-ammonia-ligase adenylyltransferasechromosome CDS525926 2685 - 0.701676
NA Tbd_2500 Two Component Transcriptional Regulator, Fis familychromosome CDS2571869 1431 - 0.686932
NA Tbd_0217 PAS/PAC Sensor Signal Transduction Histidine Kinasechromosome CDS237503 1350 + 0.672593
NA Tbd_1565 Protein tyrosine phosphatasechromosome CDS1648884 498 - 0.648594
NA Tbd_0995 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS1061004 2289 - 0.654434
NA Tbd_0471 Metal dependent phosphohydrolase, HD regionchromosome CDS493680 2217 - 0.662607
NA Tbd_2614 universal stress proteinchromosome CDS2688062 843 + 0.723606
NA Tbd_2570 Two Component Transcriptional Regulator, LuxR familychromosome CDS2643729 675 + 0.677037
NA Tbd_2227 Possible Transcriptional Regulator, Fis familychromosome CDS2306178 1293 + 0.697602
NA Tbd_2235 Histidine Kinasechromosome CDS2313456 1374 + 0.644105
NA Tbd_1807 Two Component Transcriptional Regulator, Fis familychromosome CDS1909872 1323 + 0.664399
NA Tbd_2693 Putative diguanylate cyclase (GGDEF domain)chromosome CDS2773375 1713 - 0.685931
NA Tbd_1191 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulationchromosome CDS1251929 2511 - 0.66587
NA Tbd_2463 GAF Sensor Signal Transduction Histidine Kinasechromosome CDS2536185 1248 + 0.653045
NA Tbd_2325 putative CBS-domain-containing membrane proteinchromosome CDS2399686 858 - 0.653846
NA Tbd_0100 Predicted signal transduction proteinchromosome CDS106695 1641 + 0.65326
NA Tbd_0541 hypothetical proteinchromosome CDS565804 1788 + 0.691834
NA Tbd_1758 GTP diphosphokinase, RelA/SpoT proteinchromosome CDS1848989 2169 - 0.68142
NA Tbd_0198 Periplasmic Sensor Signal Transduction Histidine Kinasechromosome CDS213568 2082 - 0.667627
NA Tbd_2279 Histidine Kinasechromosome CDS2352009 1344 + 0.674851
NA Tbd_0090 CBS signal-transduction proteinchromosome CDS94422 1890 - 0.65873
NA Tbd_1927 Putative diguanylate cyclase (GGDEF domain)chromosome CDS2023227 762 + 0.681102
NA Tbd_1277 Putative diguanylate cyclase (GGDEF domain)chromosome CDS1343320 726 - 0.672176
NA Tbd_2036 universal stress protein (Usp)chromosome CDS2126962 468 - 0.688034
NA Tbd_0476 Protein serine/threonine phosphataseschromosome CDS498656 909 + 0.638064
NA Tbd_2571 Periplasmic Sensor Hybrid Histidine Kinasechromosome CDS2644400 1905 + 0.705512
NA Tbd_1483 peptidase S24, LexA repressorchromosome CDS1570775 786 - 0.659033
NA Tbd_2428 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS2496538 2865 - 0.66911
NA Tbd_2791 Two component Transcriptional regulator, Winged helix familychromosome CDS2871834 666 + 0.701201
NA Tbd_1288 Periplasmic Sensor Signal Transduction Histidine Kinasechromosome CDS1355978 1299 + 0.672055
NA Tbd_0636 Putative diguanylate cyclase (GGDEF domain)chromosome CDS675129 1680 + 0.683929
NA Tbd_2406 chemotaxis sensory transducerchromosome CDS2477203 1701 - 0.685479
NA Tbd_0079 Transcriptional Regulator, Crp/Fnr familychromosome CDS82263 678 + 0.640118
NA Tbd_1626 hypothetical proteinchromosome CDS1712338 564 - 0.666667
NA Tbd_2814 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domainchromosome CDS2895176 966 + 0.671843
NA Tbd_1399 Two Component Transcriptional Regulator, LuxR familychromosome CDS1478925 660 - 0.645455
NA Tbd_1531 putative stress-induced morphogen BolAchromosome CDS1617104 264 + 0.655303
NA Tbd_2593 Transcriptional Regulator, Crp/Fnr familychromosome CDS2668109 765 + 0.662745
NA Tbd_0136 Two component Transcriptional regulator, Winged helix familychromosome CDS145612 663 - 0.695324
NA Tbd_0987 Multi-sensor Hybrid Histidine Kinasechromosome CDS1050974 2541 - 0.672176
NA Tbd_1929 conserved hypothetical proteinchromosome CDS2024865 822 - 0.676399
NA Tbd_1192 Response regulator receiver domain protein (CheY)chromosome CDS1254470 444 - 0.653153
NA Tbd_0231 Response regulator receiver domain protein (CheY)chromosome CDS253043 765 + 0.679739
NA Tbd_1366 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS1446133 2217 + 0.629229
NA Tbd_0611 Protein of unknown function RIO1chromosome CDS640033 849 - 0.650177
NA Tbd_1422 Putative diguanylate phosphodiesterase (EAL domain)chromosome CDS1512295 786 + 0.695929
NA Tbd_2551 Response regulator receiver domain protein (CheY)chromosome CDS2627475 366 - 0.606557
NA Tbd_2237 Two Component Transcriptional Regulator, LuxR familychromosome CDS2315267 636 - 0.605346
NA Tbd_1588 Two Component Transcriptional Regulator, LuxR familychromosome CDS1673561 648 + 0.637346
NA Tbd_2353 Periplasmic Sensor Signal Transduction Histidine Kinasechromosome CDS2427465 1287 - 0.711733
NA Tbd_0671 Putative Adenylate/Guanylate Cyclasechromosome CDS712034 1782 + 0.671156
NA Tbd_0670 Two Component Transcriptional Regulator, LuxR familychromosome CDS711144 798 + 0.619048
NA Tbd_0903 Multi-sensor Signal Transduction Histidine Kinasechromosome CDS957431 2697 + 0.669262
NA Tbd_1749 Two component Heavy metal response Transcriptional regulator, Winged helix familychromosome CDS1840147 729 + 0.644719
NA Tbd_0056 Predicted signal transduction protein containing EAL and modified HD-GYP domainschromosome CDS58176 1335 + 0.681648
NA Tbd_1507 Putative diguanylate cyclase (GGDEF domain)chromosome CDS1595584 1110 - 0.651351
NA Tbd_2611 Two component Transcriptional regulator, Winged helix familychromosome CDS2685767 702 - 0.675214
NA Tbd_2771 Two Component Transcriptional Regulator, Fis familychromosome CDS2853286 1350 + 0.699259
NA Tbd_1589 Putative diguanylate cyclase (GGDEF domain)chromosome CDS1674329 1617 + 0.658627
NA Tbd_1613 chemotaxis protein CheZchromosome CDS1695835 693 - 0.652237
NA Tbd_1290 Two Component Transcriptional Regulator, LuxR familychromosome CDS1360804 630 + 0.62381
NA Tbd_1615 Response regulator receiver domain protein (CheY)chromosome CDS1697024 1071 - 0.633987
NA Tbd_2769 Periplasmic Sensor Signal Transduction Histidine Kinasechromosome CDS2851281 1455 + 0.692784
NA Tbd_0085 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and Response Regulator Receiver modulationchromosome CDS88385 2217 + 0.661705
NA Tbd_2670 Metal dependent phosphohydrolase, HD regionchromosome CDS2743877 1035 + 0.676328
NA Tbd_2550 twitching motility protein PilIchromosome CDS2626940 525 - 0.657143
NA Tbd_1232 Putative Serine protein kinase, PrkAchromosome CDS1290908 1920 + 0.605208
NA Tbd_0634 conserved hypothetical proteinchromosome CDS672757 807 - 0.665428
NA Tbd_2585 Putative diguanylate cyclase (GGDEF domain)chromosome CDS2660755 1440 - 0.663194
NA Tbd_0230 two-component system sensor ATPasechromosome CDS252040 1077 + 0.68338
NA Tbd_0152 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS162197 2787 - 0.673843
NA Tbd_0009 hypothetical proteinchromosome CDS8567 393 - 0.653944
NA Tbd_2552 Response regulator receiver domain protein (CheY)chromosome CDS2627867 393 - 0.636132
NA Tbd_2689 Periplasmic Sensor Signal Transduction Histidine Kinasechromosome CDS2769192 1260 + 0.699206
NA Tbd_1942 Serine/Threonine protein kinasechromosome CDS2035564 1866 - 0.689711
NA Tbd_1456 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)chromosome CDS1539712 3639 + 0.655125
NA Tbd_1938 Putative diguanylate phosphodiesterase (EAL domain)chromosome CDS2031840 1269 + 0.660362
NA Tbd_1039 Putative diguanylate cyclase (GGDEF domain)chromosome CDS1102188 1182 - 0.650592
NA Tbd_1617 MCP methyltransferase, CheR-typechromosome CDS1698727 870 - 0.626437
NA Tbd_1728 Nucleotide binding proteinchromosome CDS1812412 1398 + 0.623033
NA Tbd_1618 chemotaxis sensory transducerchromosome CDS1699711 1674 - 0.651732
NA Tbd_0551 Two Component Transcriptional Regulator, Fis familychromosome CDS577920 1431 - 0.649196
NA Tbd_1744 Histidine Kinasechromosome CDS1831479 1893 - 0.70206
NA Tbd_2354 Two component Transcriptional regulator, Winged helix familychromosome CDS2428761 708 - 0.675141
NA Tbd_2533 Transcriptional regulators, TraR/DksA familychromosome CDS2605056 420 + 0.647619
NA Tbd_2690 Two Component Transcriptional Regulator, Fis familychromosome CDS2770448 540 + 0.681481
NA Tbd_0168 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical)chromosome CDS182154 822 + 0.703163
NA Tbd_0983 adenylyl cyclase class-3/4/guanylyl cyclasechromosome CDS1046077 2214 + 0.692864
NA Tbd_1400 Periplasmic Sensor Signal Transduction Histidine Kinasechromosome CDS1479590 1935 - 0.669767
NA Tbd_1625 Response regulator receiver domain protein (CheY)chromosome CDS1711923 363 - 0.628099
NA Tbd_1061 Putative diguanylate phosphodiesterase (EAL domain) with GAF sensorchromosome CDS1123136 1365 - 0.65348
NA Tbd_1819 hypothetical proteinchromosome CDS1918187 762 - 0.654856
NA Tbd_2236 Response regulator receiver domain protein (CheY)chromosome CDS2314831 468 - 0.638889
NA Tbd_0084 Histidine Kinasechromosome CDS86420 1962 + 0.703364
NA Tbd_1620 chemotaxis sensory transducerchromosome CDS1703684 1680 - 0.628571
NA Tbd_2548 CheA Signal Transduction Histidine Kinases (STHK)chromosome CDS2618827 5883 - 0.689274
NA Tbd_1587 Possible Sensor with PAS/PAC domainchromosome CDS1672042 1482 + 0.678812
NA Tbd_2092 putative positive regulator of sigma E activitychromosome CDS2184202 435 - 0.698851
NA Tbd_1268 Multi-sensor Hybrid Histidine Kinasechromosome CDS1331609 2346 + 0.676471
NA Tbd_0216 Two component Transcriptional regulator, Winged helix familychromosome CDS236782 693 + 0.670996
NA Tbd_2159 Predicted signal transduction protein containing EAL and modified HD-GYP domainschromosome CDS2244620 1443 - 0.666667
NA Tbd_0660 chemotaxis sensory transducerchromosome CDS699960 1761 + 0.691652
NA Tbd_0772 GTP-binding protein TypAchromosome CDS816085 1833 - 0.6503
NA Tbd_2497 HPr kinasechromosome CDS2569417 930 + 0.68172
NA Tbd_2786 Two Component Transcriptional Regulator, LuxR familychromosome CDS2867097 633 + 0.63981
NA Tbd_1624 CheA Signal Transduction Histidine Kinases (STHK)chromosome CDS1709801 2076 - 0.646917
NA Tbd_0498 Transcriptional Regulator, Fis familychromosome CDS517334 1512 - 0.675265
NA Tbd_1700 Serine/Threonine protein kinasechromosome CDS1791286 1278 + 0.654147
NA Tbd_0018 Multi-sensor Signal Transduction Histidine Kinasechromosome CDS17837 2133 + 0.665729
NA Tbd_2023 Putative diguanylate cyclase (GGDEF domain)chromosome CDS2111574 1899 + 0.688784
NA Tbd_1265 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS1326515 2277 + 0.673254
NA Tbd_2578 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS2653096 2109 - 0.661925
NA Tbd_2610 Periplasmic Sensor Signal Transduction Histidine Kinasechromosome CDS2684512 1266 - 0.699052
NA Tbd_1619 chemotaxis sensory transducerchromosome CDS1701710 1680 - 0.630952
NA Tbd_0348 Two component Transcriptional regulator, Winged helix familychromosome CDS366627 648 - 0.658951
NA Tbd_0904 Two Component Transcriptional Regulator, Fis familychromosome CDS960127 1365 + 0.674725
NA Tbd_2634 Putative diguanylate cyclase (GGDEF domain)chromosome CDS2705731 2532 - 0.689179
NA Tbd_1289 Multi-sensor Signal Transduction Histidine Kinasechromosome CDS1357301 3507 + 0.68235
NA Tbd_1623 CheW proteinchromosome CDS1709276 504 - 0.611111
NA Tbd_0706 conserved hypothetical signal peptide proteinchromosome CDS745801 1224 - 0.642974
NA Tbd_2464 Two Component Transcriptional Regulator, LuxR familychromosome CDS2537429 666 + 0.663664
NA Tbd_2671 Periplasmic Sensor Hybrid Histidine Kinasechromosome CDS2744919 2526 + 0.62985
NA Tbd_1006 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS1073271 2193 + 0.604651
NA Tbd_1193 Multi-sensor Signal Transduction Histidine Kinasechromosome CDS1254910 2574 - 0.667832
NA Tbd_1087 Phosphohistidine Phosphatase, SixAchromosome CDS1149009 453 + 0.721854
NA Tbd_1953 Putative diguanylate cyclase (GGDEF domain)chromosome CDS2046487 1365 - 0.654212
NA Tbd_0691 Transcriptional regulators, TraR/DksA familychromosome CDS731275 420 + 0.585714
NA Tbd_1411 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domainchromosome CDS1496699 1971 - 0.665652
NA Tbd_1425 Protein tyrosine phosphatasechromosome CDS1515114 426 + 0.676056
NA Tbd_2792 Periplasmic Sensor Signal Transduction Histidine Kinasechromosome CDS2872496 1335 + 0.71161
NA Tbd_1614 Response regulator receiver domain protein (CheY)chromosome CDS1696529 396 - 0.59596
NA Tbd_2240 hypothetical proteinchromosome CDS2316788 300 + 0.706667
NA Tbd_0487 Putative diguanylate cyclase (GGDEF domain)chromosome CDS506550 1092 + 0.619048
NA Tbd_0530 HPr kinasechromosome CDS555878 939 - 0.663472
NA Tbd_1042 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s)chromosome CDS1104886 3180 - 0.672327
NA Tbd_0475 Serine/Threonine protein kinasechromosome CDS497701 945 + 0.621164