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# Shigella sonnei Ss046, Ss046

>SSO_0871 hypothetical bacteriophage protein
MRTYLSGLTASGYAHPKIIPGAIYLDKNGNRVTVKELMFDRVYFIRDGYS
FHSSLNVEIFISRFRREIPLSRNNHVSCMDVDKKLQELKNMIAAWREQK
>SSO_1790 conserved hypothetical protein
MTWLFCDRIATKIDKNNGISMITHNFNTLDLLTSPVWIVSPFEEQLIYAN
SAARLLMQDLTFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRK
EEETALNCRLVLRKLTEAEPVIIFEGIEASATLGLKASRSANYQRKKQGF
YARFFLTNSAPMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEIN
MLGRRVMPIMHEISHLPGGHKPLNFIHKLADGSTRHVQTYAGPIEIYGDK
LMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA
IAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFR
WGGEEFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHE
GNESIDELFKRVDDALYRAKNDGRNRVLAA
>SSO_2396 conserved hypothetical protein
MQVFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLV
SPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGV
ASVLVISHLPLVGYLVAELCPGETPPMFTTSAIASVTLDESGNGTFNWQM
SPCNLKMAKAI
>SSO_1345 conserved hypothetical protein
MSPYAYRVARMQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRN
LNQQRVVQFANHAVEELDKVLLPLQAGSEVLLPLIGLPCSVAHLPLRKQA
AKLQTVRSIGLVQDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDR
ALIKGSPVLIQWTPAAGSSNAGVMEMINIDLLTAMLLEPQLPQISSASLT
VDKRHLLYGNGLVDSLPQPEDNENYQVSSQRFPFTINVNGPGATALAWHY
LPTQLPLAVLLSLLVGYIAWLATAYRMSFSREINLGLAQHEFELFCQPLL
NARSQQCIGVEILLRWNNPRQGWISPDVFIPIAEEHHLIVPLTRYVMAET
IRQRHVFPMSSQFHVGINVAPSHFRRGVLIKDLNQYWFSAHPIQQLILEI
TERDALLDVDYRIARELHRKNVKLAIDDFGTGNSSFSWLETLRPDMLKID
KSFTAAIGSDAVNSTVTDIIIALGQRLNIELVAEGVETQEQAKYLRRHGV
HILQGYLYAQPMPLRDFPKWLAGSQPPPARHNGHITPIMPLR
>SSO_1329 conserved hypothetical protein
MLILIGWQFQVRQTSDYIMNKTEFYADLNRDFNALMAGETSFLATLANTS
ALLYERLTDVNWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVAR
NQVQRIEDVHAFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRF
TDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG
>SSO_3892 putative transposase
MWQINEVVLFDNDPYRILAIEDGQVVWMQISADKGVPQARAELLLMQYLD
EGRLVRTDDPYVHLDLEEPSVDSVSFQKREEDYRKILPIINSKDRFDPKV
RSELVEHVVQEHKVTKATVYKLLRRYWQRGQTPNALIPDYKNSGAPGERR
SATGTAKIGRAREYGKGEGTKVTPEIERLFRLTIEKHLLNQKGTKTTVAY
RRFVDLFAQYFPRIPQEDYPTLRQFRYFYDREYPKAQRLKSRVKAGVYKK
DVRPLSSTATSQALGPGSRYEIDATIADIYLVDHHDRQKIIGRPTLYIVI
DVFSRMITGFYIGFENPSYVVAMQAFVNACSDKTAICAQHDIEISSSDWP
CVGLPDVLLADRGELMSHQVEALVSSFNVRVESAPPRRGDAKGIVESTFR
TLQAEFKSFAPGIVEGSRIKSHGETDYRLDASLSVFEFTQIILRTILFRN
NHLVMDKYDRDADFPTDLPSIPVQLWQWGMQHRTGSLRAVEQEQLRVALL
PRRKVSISSFGVNLWGLYYSGSEILREGWLQRSTDIARPQHLEAAYDPVL
VDTIYLFPQVGSRVFWRCNLTERSRQFKGLSFWEVWDIQAQEKHNKANAK
QDELTKRRELEAFIQQTIQKANKLTPSTTEPKSTRIKQIKTNKKEAVTSE
RKKRAEHLKPSSSGDEAKVIPFNAVEADDQEDYSLPTYVPELFQDPPEKD
ES
>SSO_1634 conserved hypothetical protein
MEMYFKRMKDEWTGLVEQADPLIRAKAAEIAVAHAHYLSIEFYRIVRIDP
HAEEFLSNEQVERQLKSAMERWIINVLSAQVDDVERLIQIQHTVAEVHAR
IGIPVEIVEMGFRVLKKILYPVIFSSDYSAAEKLQVYHFSINSIDIAMEV
MTRAFTFSDSSASKEDENYRIFSLLENAEEEKERQIASILSWEIDIIYKI
LLDSDLGSSLPLSQADFGLWFNHKGRHYFSGIAEVGHISRLIQDFDGIFN
QTMRNTRNLNNRSLRVKFLLQIRNTVSQIITLLRELFEEVSRHEVGMDVL
TKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDVDKFKEINDTWGHNTGD
EILRKVSQAFYDNVHSSDYVFRYGGDEFIIVLTEASENETLRTAERIRSR
VEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGR
NRVELWKASL
>SSO_0248 conserved hypothetical protein
MPEEKLQTLSLQVINGSELESGRAARCLFTQQGNVGHGPECHWSVQDRQQ
SIPAQAFTVILHDGTFCLRPQTAQLWLNQAKVTATSDLIQLRQGDEIQIG
RLMVRVHLNRGDIPHYDEEMATPETIVTNRDMLTDTLLSTEGAPHYPGMT
HRHQLADTVVNGFSADPLQALQSESLITTGDPLSGIAAVRPSAPLSDPAS
NGGINTPFMDLPPIYASPGDRNDDVSAAEMAQRHVAVTPLLRGLGGSLTM
SNSDDADDFLEEAGRTLQAAIKGLLDLQQQRNSLSDKHLRPLEDNPLRLN
MDYATALDVMFAEGKSPVHLAAPAAVSESLRNVRHHEEANRAAIVESLRV
LLDAFSPQNLLRRFVQYRRSHELRQPLDDAGAWQMYSHYYEELASDRQQG
FEMLFNEVYAQVYDRVLREKQREPEA
>SSO_2013 conserved hypothetical protein
MGVVRVQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWREV
VVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDF
TSLRNAVTEFEQHRDEHAWQIELNRRRTLSVNGVSDALVSEGNLLSRENE
SLDNEITAALEVGYLLRLAHNTSSMVEQAMYVSRAGFYVSTQPTLFTRNV
PTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEHASNTEPQVTVSVPVD
SNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRFLTSSNPD
HPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLVRVH
TLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQSSLQ
WQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAIND
RFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAE
VAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADR
RLYLAKQAGRNRVCASDNA
>SSO_1635 putative enzyme
MRQDAEVIMKLTDAENAADGIFFPALEQNMMGAVLINENDEVMFFNPAAE
KLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQ
LEKKDGSKIWTRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAV
DHLDRPVIVLDPERHIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPA
DNRIRLQQLLWKTARDQDEFLLLTRTGEKIWIKASISPVYDVLAHLQNLV
MTFSDITEERQIRQLEGNILAAMCSSPPFHEMGEIICRNIESVLNESHVS
LFALRNGMPIHWASSSHGAEVQNAQSWSATIRQRDGAPAGILQIKTSSGA
ETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHN
YLDDLVDKAVSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLK
PDQYLCRIEGTQFVLVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLT
LSIGISYDVGKNRDYLLSTAHNAMDYIRKNGGNGWQFFSPAMNEMVKERL
VLGAALKEAISNNQLKLVYQPQIFAETGELYGIEALARWHDPQHGHVPPS
RFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQNIHIPALSVNLSALHFR
SNQLPNQVSDAMQAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGV
GLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITS
IGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMS
SVLPLKI
>SSO_1452 conserved hypothetical protein
MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIPTSRVIA
QLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNY
AGELLKYPFIELLINENYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNST
MKAVFDGLFTRVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGG
IDTAEILAQITPFDFHALQGCLWPAVPINQITTLVQR
>SSO_2436 putative endopeptidase
MSRVTAIISALVICIIVCLSLAVNHYRDNAIAYKEQRDNKASELEKANAT
IADMRKRQRDVAELDARYIKELADANATIESLRADVSAGRKRLQVAATCA
KSTTGASGMGDGESPGLTADAELNYYRLRSGIDKITAQVNYLQEYIRTQC
LK
>SSO_2585 putative cytochrome C-type biogenesis protein
MKLNATYIKMRDKWWGLPLFLPSLILPIFAHINTFAHISSGEVFLFYLPL
ALMISMMMFFSWAALPGIALGIFVRKYAELGFYETLSLTANFIIIIILCW
GGYRVFTPRRNNVSHGDTRLISQRIFWQIVFPATLFLILFQFAAFVGLLA
SRENLVGVMPFNLGTLINYQALLVGNLIGVPLCYFIIRVVRNPFYLRSYY
SQLKQQVDAKVTKKEFALWLLALGALLLLLCMPLNEKSTIFSTNYTLSLL
LPLMMWGAMRYGYKLISLLWAVVLMISIHSYQNYIPIYPGYTTQLTITSS
SYLVFSFIVNYMAVLATRQRAVVRRIQRLAYMDPVVHLPNVRALNRALRD
APWSALCYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLEPGEDVYQL
SGNDLALRLNTESHQERITALDSHLKQFRFFWDGMPMQPQIGVSYCYVRS
PVNHIYLLLGELNTVAELSIVTNAPENMQRRGAMYLQRELKDKVAMMNRL
QQALEHNHFFLMAQPITGMRGDVYHEILLRMKGENDELIVPDSFLPVAHE
FGLSSSIDMWVIEHTLQFMAENRAKMPAHRFAINLSPTSVCQARFPVEVS
QLLAKYQIEAWQLIFEVTESNALTNVKQAQITLQHLQELGCQIAIDDFGT
GYASYARLKNVNADLLKIDGSFIRNIVSNSLDYQIVASICHLARMKKMRV
VAEYVENEEIREAVLSLGIDYMQGYLIGKPQPLIDTLNEIEPIRESA
>SSO_1606 hypothetical protein
MLADWFSEQFSTGVLIVPLTVMLLDIDYFKSINDNYGHECGDKVLSVFAR
HIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW
QQKTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCLYRSKKDGRNRTS
TMRYGEEVV
>SSO_2473 putative 2-component transcriptional regulator
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAI
FLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYIL
KPYQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVT
PINDIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFC
VNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQLMHL
>SSO_4515 putative inner membrane protein
MLILAIGLPDSKGFLWLANDKNYHMILVIIINERDETMLQRTLGSGWGVL
LPGLLIAGLMYADLSPDQWRIVILMGLVLTPVMLYHKQLRHYVLLPSCLA
LIAAIMLMIMNLNQG
>SSO_3210 aer, aerotaxis sensor receptor, flavoprotein
MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGFTLQELQG
QPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAV
PMVREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTSKRIHKGLVVRK
GWLGKLPSLPLRWRARGVMTLMFILLAAMLWFVAAPVVTYFLCVLVVLLA
SACFEWQIVRPIENVARQALKVATGERNSVEHLNRSDELGLTLRAVGQLG
LMCRWLINDVSSQVSSVRNGSETLAKGTDELNEHTQQTVDNVQQTVATMN
QMAASVKQNSATASAADKLSITASNAAVQGGEAMTTVIKTMDDIADSTQR
IGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRS
ANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQIS
HSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLED
AVTVLH
>SSO_0057 apaH, diadenosine tetraphosphatase
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLR
YVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLN
WLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPF
FLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESP
EEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWG
GTLTCLRWEDKQYFVQPSNRHKDLGEAAAS
>SSO_4551 arcA, negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA)
MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINL
VIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRS
LIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRT
VDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED
>SSO_3358 arcB, histidine protein kinase/phosphatase
MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQV
ESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRER
DLSLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQL
EQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKP
VDVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY
DRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTISHELRTPLNG
IVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQ
LDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLR
QILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKI
FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFT
LTIHAPSVAEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGN
SVDVAMTGKAALEMFKPGEYDLVLLDIQLPDMTGLDISRELTKRYPREDL
PPLVALTANVLKDKQEYLNAGMDDVLSKPLSVPALTAMIKKFWDTQDDEE
STVTTEENSKSEALLDIPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVL
ESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSPDLPAWEDNV
GEWIEEMKEEWRHDVEVLKAWVAKATKK
>SSO_2368 argT, lysine-, arginine-, ornithine-binding periplasmic protein
MKKSILALSLLVGLSAAASSYAALPETVRIGTDTTYAPFSSKDAKGDFVG
FDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQ
QEIAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGSTQEAYANE
TWRSKGVDVVAYANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKAF
AFAGSSVKDKKYFGDGTGVGLRKDDAELTAAFNKALGELRQDGTYDKMAK
KYFDFNVYGD
>SSO_0848 artI, arginine 3rd transport system periplasmic binding protein
MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIVGFDVDL
AQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLF
TTPYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITT
VPYDSYQNAKLDLQNGRIDGVFGDTAVVTEWLKDNPKLAAVGDKVTDKDY
FGTGLGIAVRQGNTELQQKLNTALEKVKKDGTYETIYNKWFQK
>SSO_0845 artJ, arginine 3rd transport system periplasmic binding protein
MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIVGFDIDL
AKALCKQMQAECTFTNHAFDSLIPSLKFRKYDSVISGMDITPERSKQVSF
TTPYYENSAVVIAKKDTYKTFADLKGKRIGMENGTTHQKYIQDQHPEVKT
VSYDSYQNAFIDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQY
FGTGLGIAVRPDNKALLEKLNNALAAIKADGTYQKINDQWFPQ
>SSO_2279 atoC, response regulator of ato
MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPD
VVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAF
DYVIKPFDLDELNLIVQRALQLQSMKKEIRHLHQALSASWQWGHILTNSP
AMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKV
NCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP
LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFRE
DLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAM
SLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEV
KTASVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYK
LQEYGIDPADV
>SSO_2278 atoS, sensor protein AtoS for response regulator AtoC
MHYMKWIYPRRLRNQMILMAILMVIVPTLTIGYIVETEGRSAVLSEKEKK
LSAVVNLLNQALGDRYDLYIDLPREERIRALNAELAPITENITHAFPGIG
AGYYNKMLDAIITYAPSALYQNNVGVTIAADHPGREVMRTNTPLVYSGRQ
VRGDILNSMLPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTADL
LISLLLIVLFSRRLSANIDIITDGLSTLAQNIPTRLPQLPGEMGQISQSV
NNLAQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRH
ELVGQPYSMLFDNTQFYSPVLDTLEHGTEHVALEISFPGRDRTIELSVTT
SRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATLGELMAGVAHEV
RNPLTAIRGYVQILRQQTSDPIHQEYLSVVLKEIDSINKVIQQLLEFSRP
RHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELL
KQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQK
KIFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI
NPQGNQTV
>SSO_2131 baeR, transcriptional response regulatory protein
MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV
RQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGL
EIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRF
QASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRT
IDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV
>SSO_2130 baeS, sensor protein (for BaeR)
MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIKHGNEQR
LQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPP
HGWRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVER
LTRNTDINFDKQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGT
HKLAAGDFTTRVTPTSEDELGKLAQDFNQLASTLEKNQQMRRDFMADISH
ELRTPLAVLRGELEAIQDGVRKFTPETVASLQAEVGTLTKLVDDLHQLSM
SDEGALAYQKAPVDLIPLLEVAGGAFRERFASRGLKLQFSLPDSITVFGD
RDRLMQLFNNLLENSLRYTDSGGSLKISAEQHDKTVRLTFADSAPGVSDE
QLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGG
VSITVELPLERDLQREV
>SSO_2943 barA, sensor-regulator, activates OmpR by phophorylation
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIE
PLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSN
FHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDA
KNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMR
DVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAY
HEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANM
SHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLD
FSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPD
NVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIR
DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDI
SFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQ
CTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLA
KAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFC
HHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSG
HQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAH
AMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVN
EIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVG
ENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELL
ELLDEMDNVAREASKILG
>SSO_4288 basR, transcriptional regulatory protein
MKILIVEDDTLLLQGLILAAQTEGYTCDGVTTARMAEQSLEAGHYSLVVL
DLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLV
KPFALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELIL
TPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDK
VGKARIRTVRGFGYMLVANEEN
>SSO_4287 basS, sensor protein for BasR
MRFLRRPISLRQRLILTIGAILLVFELISIFWLWHESTEQIQLFEQALRD
NRNNDRHIMREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQK
ELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADV
AHELRTPLAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAG
QSFSSGNYQHVKLLEDVILPSYDELSTMLDQRQQTLLLPESAADITVQGD
ATLLRMLLRNLVENAHRYSPQGSNIMIKLQEDGGAVMAVEDEGPGIDESK
CGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQETSGTRAW
VRLKKDQYVANQI
>SSO_4513 bglJ, 2-component transcriptional regulator
MEHSRIKKRNVALIEKCVMSSIGIESLFRKFAGNPYKLHTYTSQESFQDA
MSRISFAAVIFSFSAMRSERREGLSCLTELAIKFPRTRRLVIADDDIEAR
LIGSLSPSPLDGVLSKASTLEIFHQELFLSLNGVRQATDRLNNQWYINQS
RTLSPTEREILRFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVSSD
AGLLEAADILLCMRHCEASNVLHPY
>SSO_0418 bolA, possible regulator of murein genes
MTSQRCRRRYFMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHF
KVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQ
DTVFASPPCRGAGSIA
>SSO_1229 cheA, sensory transducer kinase between chemo-signal receptors and CheB and CheY
MSMDISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIFRAAHSI
KGGAGTFGFSVLQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQE
QLDAYKQSQEPDAASFDYICQALRQLALEAKGETPSAVTRLSVVAKSEPQ
DEQSRSQSPRRIILSRLKAGEVDLLEEELGHLTTLTDVVKGADSLSAILP
GDIAEDDITAVLCFVIEADQITFETVEVSPKISTPPVLKLAAEQAPTGRV
EREKTTRSNESTSIRVAVEKVDQLINLVGELVITQSMLAQRSSELDPVNH
GDLITSMGQLQRNARDLQESVMSIRMMPMEYVFSRYPRLVRDLAGKLGKQ
VELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSV
GNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSENMSDDEV
AMLIFAPGFSMAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTT
IRILLPLTLAILDGMSVRVGDEVFILPLNAVMESLQPREADLHPLAGGER
VLEVRGEYLPIVELWKVFNVAGAKTEATQGIVVILQSGGRRYALLVDQLI
GQHQVVVKNLESNYRKVPGISAATILGDGSVALIVDVSALQAINREQRMA
NTAA
>SSO_1234 cheB, response regulator for chemotaxis
MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNP
DVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELG
AIDFVTKPQLGIREGMLAYSEMIAEKVRTAAKASLAAHKPLSAPTTLKAG
PLLSSEKLIAIGASTGGTEAIRHVLQPLPLSSPALLITQHMPPGFTRSFA
DRLNKLCQIGVKEAEDGERVLPGHAYIAPGDRHMELARSGANYQIKIHDG
PAVNRHRPSVDVLFHSVAKQAGRNAVGVILTGMGNDGAAGMLAMRQAGAW
TLAQNEASCVVFGMPREAINMGGVCEVVDLSQVSQQMLAKISAGQAIRI
>SSO_1233 cheR, response regulator for chemotaxis; protein glutamate methyltransferase
MTSSLPCGQTSLLLQMTERLALSDAHFRRISQLIYQRAGIVLADHKRDMV
YNRLVRRLRSLGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREA
HHFPLLADHAHRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKV
FASDIDTEVLEKARSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLVRVRQ
ELANYVDFAPLNLLAKQYTVPGPFDAIFCRNVMIYFDQNTQQEILRRFVP
LLKPDGLLFAGYSENFSHLERRFTLRGQTVYALSKD
>SSO_1230 cheW, positive regulator of CheA protein activity
MTGMTNVTKLASEPSGQEFLVFTLGDEEYGIDILKVQEIRGYDQVTRIAN
TPAFIKGVTNLRGVIVPIVDLRIKFSQVDVDYNDNTVVIVLNLGQRVVGI
VVDGVSDVLSLTAEQIRPAPEFAVTLSTEYLTGLGALGDRMLILVNIEKL
LNSEEMALLDSAASEVA
>SSO_1235 cheY, chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components
MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG
YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQ
AGASGYVVKPFTAATLEEKLNKIFEKLGM
>SSO_1236 cheZ, chemotactic response; CheY protein phophatase; antagonist of CheY as switch regulator
MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPD
ARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFAD
PIDLADARELVTDTRQFLADVPAHTSFTNAQLLEIMMAQDFQDLTGLVIK
RMMDVIQEIERQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSKVGVVA
SQDQVDDLLDSLGF
>SSO_2939 chpA, probable growth inhibitor, PemK-like, autoregulated
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVP
CTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQ
LIKAKINVLIG
>SSO_2940 chpR, suppressor of inhibitory function of ChpA, PemI-like, autoregulated
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKE
PVFTLAELVNDITPENLHENIDWGEPKDKEVW
>SSO_0572 citA, putative sensor-type protein
MLQLNENKQFAFFQRLAFPLRIFLLILVFSIFVIAALAQYFTASFEDYLT
LHVRDMAMNQAKIIASNDSVISAVKTRDYKRLATIANKLQRDTDFDYVVI
GDRHSIRLYHLNPEKIGYPMQFTKQGALEKGESYFITGKGAMGMAMRAKT
PIFDDDGKVIGVVSIGYLVSKIDSWRAEFLLPMAGVFVVLLGILMLLSWF
LAAHIRRQMMGMEPKQIARVVRQQEALFSSVYEGLIAVDPHGYITAINRN
ARKMLGLSSPGRQWLGKPIAEVVRPADFFTEQIDEKRQDVVANFNGLSVI
ANREAIRSGDDLLGAIISFRSKDEISTLNAQLTQIKQYVESLRTLRHEHH
NWMSTLNGLLQMKEYDRVLAMVQGESQAQQQLIDSLREAFADRQVAGLLF
GKVQRARELGLKMIIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLR
SDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADEP
GEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIYIPKVKPNDSSINPI
DR
>SSO_0573 citB, sequence similarity to Shigella regulator
MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK
PGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCG
VFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGE
PKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISCTTARRYLEY
CASRHLIIAEIVHGKVGRPQRIYHSG
>SSO_3088 cmtB, PTS system, mannitol-specific enzyme II component, cryptic
MRLSDYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQAIKDST
INNGPYYILAPGVAMPHARPECGALKTGMSLTLLEQGVYFPGNDEPIKLL
IGLSAADADSHIGAIQALSELLCEEEILEQLLTAASEKQLADIISRG
>SSO_4081 cpxA, probable sensor protein acting on arcA
MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQRQGLMIE
QHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERS
EMQIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPAS
SSQSDFINLLFDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEV
AQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTSQQRLLSDISHEL
RTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSMINDLLVMSRNQQK
NALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNAL
ESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIF
RPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIW
LPLYKRS
>SSO_4082 cpxR, transcriptional regulator in 2-component system
MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLL
DVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPK
PFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASF
DGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMH
ISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS
>SSO_4548 creB, catabolic regulation response regulator
MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDV
MILDVGLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADD
YVAKPFSPREVCARVRTLLRRVKKFSSPSPVIRIGHFELNEPAAQISWFD
TPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIK
TLRAKLRAINPDLSPINTHRGMGYSLRGL
>SSO_4549 creC, catabolite repression sensor kinase for PhoB
MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLIDTATLLA
ELARPDLLSGDPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDA
QGKVLFDSANKAVGQDYSRWNDVWLTLRGQYGARSTLQNPADPESSVMYV
AAPIMDGSRLIGVLSVGKPNAAMAPVIKRSERRILWASAILLGIALVIGA
GMVWWINRSIARLTRYADSVTDNKPVPLPDLGSSELRKLAQALESMRVKL
EGKNYIEQYVYALTHELKSPLAAIRGAAEILREGPPPEVVARFTDNILTQ
NARMQALVETLLRQARLENRQEVVLTAVDVAALFRRVSEARTVQLAEKNI
TLHVTPTEVNVAAEPALLDQALGNLLDNAIDFTPESGRITLSAEVDQEHV
TLKVLDTGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFN
GEVTLRNVQEGGVLASLRLHRHFT
>SSO_3488 crp, cyclic AMP receptor protein
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAV
LIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISY
KKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLN
LAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAH
GKTIVVYGTR
>SSO_2840 csrA, carbon storage regulator
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQR
IQAEKSQQSSY
>SSO_0549 cstA, carbon starvation protein
MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCIYLIAYR
FYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAG
PLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGEL
VKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTI
PLAIFMGIYLRYLRPGRIGEVSVIGLVFLIFAIISGGWVAESPTWAPYFD
FTGVQLTWMLVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAVGILI
MRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIACGAVSGFHALISSGTT
PKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAVL
APAGTADVVASAAQVVSSWGFAITPDTLNQIASEVGEQSIISRAGGAPTL
AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQD
LLGVVSPGLKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPL
FGIANQMLAGMALMLCAVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQK
AFSPDAKVGFLAIANKFQAMIDSGNIPSQYTESQLAQLVFNNRLDAGLTI
FFMVVVVVLALFSIKSALAALKDPKPTAKETPYEPMPENVEEIVAQAKGA
H
>SSO_0157 dksA, dnaK suppressor protein
MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQ
LRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIE
KTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMA
G
>SSO_3535 envZ, protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompC
MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQQFNKVL
AYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLR
WAQHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLT
EIHQGDFSPLFRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGI
IPPPLREYGASEVRSVTRAFNHMAAGVKQLADDRTLLMAGVSHDLRTPLT
RIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEMPMEMAD
LNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAAR
YGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTIS
GTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTKEG
>SSO_2460 evgA, putative positive transcription regulator (sensor EvgS)
MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVI
IDVDIPGVNGILVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFV
SKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEIS
VMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQR
NKIG
>SSO_2461 evgS, putative sensor for regulator EvgA
MKFLPYIFLLCCGLWSTISFADEDYIEYRGISSNNRVILDPVRLSNKELR
WLASKKNLVIAVHKSQTATLLHTDSQQRVRGINADYLNLLKRTLNIKLTL
REYADHQKAMDALEEGEVDIVLSHLVASPPLNDDIAATKPLIITFPALVT
TLHDSMRPLTSSKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALAS
VSAGQNDYFIGSNIITSSMISRYFTHSLNVVKYYNSPRQYNFFLTRKESV
VLNEVLNRFVDALTNEVRYEVSQNWLDTGNLAFLNKPLELTEHEKQWIKQ
HPDLKVLENPYSPPYSMTDENGSVRGVMGDILNIITLQTGLNFSPITVSH
NIHAGTQLNPGGWDILPGAIYSEDRENNVLFAEAFITTPYVFVMQKAPDS
EQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIKVDNASAAFHKVKEGELD
ALVATQLNSRYMIDHYYPNELYHFLIPGVPNASLSFAFPRGEPELKDIIN
KALNAIPPSEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSS
LLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVIS
HNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRTIYT
QVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEV
ERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEA
ISLAYSTGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFG
AIAASKSIALICSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVK
ITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGS
GLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAE
HPITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM
QHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLS
CGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDIEALKNNTANDLQ
LMQEILMTFQHETHKDLPAAFQALEAGDNRTFHQCIHRIHGAANILNLQK
LINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND
>SSO_4464 fecR, regulator for fec operon, periplasmic
MNPLLTDSRRQALRSASHWYAVLSGERVSPQQEARWQQWYEQDQDNQWAW
QQVENLRNQLGGVPGDVASRALHDTRLTRRHVMKGLLLLLGAGGGWQLWQ
SETGEGLRADYRTAKGTVSRQQLEDGSLLTLNTQSAADMRFDAHQRTVRL
WYGEIAITTAKDALQRPFRVLTRQGQLTALGTEFTVRQQDNFTQLDVQQH
AVEVLLASAPAQKRIVNAGESLQFSASEFGAVKPLDDESTSWTKDILSFS
DKPLGEVIATLTRYRNGVLRCDPAVAGLRLSGTFPLKNTDAILNVIAQTL
PVKIQSITRYWINISPL
>SSO_1197 fliY, putative periplasmic binding transport protein
MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLLVGLEGT
YPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKR
IDVVINQVTISDERKKKYDFSTPYTISGIQALVKKGNEGTIKTADDLKGK
KVGVGLGTNYEEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLA
ALDLVKKTNDTLAVTGEAFSRQESGVALRKGNEDLLKAVNDAIAEMQKDG
TLQALSEKWFGADVTK
>SSO_1799 fnr, transcriptional regulation of aerobic, anaerobic respiration, osmotic balance
MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDNIIERKK
PIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVG
FDAIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGE
IKGDQDMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDI
GNYLGLTVETISRLLGRFQKSGMLAVKGKYITIENNDALAQLAGHTRNVA
>SSO_4070 frvA, PTS system, fructose-specific IIA component
MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQTLLLREK
MHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICL
GVPQSGEEDQVKIIGTLCRKIIHQDFIHQLQQGDADQVLALLNQTLSS
>SSO_4067 frvR, putative frv operon regulatory protein
MLNERQLKIVDLLEQQPRTPGELAQQTGVSGRTILRDIDYLNFTLNGKAR
IFASGSAGYQLEIFERRSFFQLLQKHDNDDRLLALLLLNTFTPRAQLASA
LNLPETWVAERLPRLKQRYERTCCLASRPGLGHFIDETEEKRVILLANLL
RKDPFLIPLAGVTRDNFQHLSTACDNQHRWPLMQGDYLSSLILAIYALRN
QLTDEWPQYPGNEIKQIVEQSGMFLGDNAVRTLTGLIEKQHQQAQVISAD
HVLGLLQRVPGIASLNIIDTQLVENITGHLLRCLAAPVWIAEHRQSSMNN
LKAAWPAAFDMSLHFITLLREQLDIPLFDSDLIGLYFACALERHQNERQP
IILLSDQNAIATINQLAIERDVLHCRVIIARSLSELIAIREEIEPLLIIN
NSHYLLDDAVNNYITVKNIITAADIEQIKHFLATAFIRQQPERFFSAPGS
FHYSNVRGESWQHITRQICAQLVAQHHITADEAQRIIAREGEGENLIVNR
LAIPHCWSEQERRFRGFFITLAQPVEVNNEVINHVLIACAAADARHELKI
FSYLASVLCQHPAEVIAGLTGYEAFMELLHKG
>SSO_3190 glnE, adenylylating enzyme for glutamine synthetase
MKPLSSPLQQYRQTVVERLPEPLAEEPLSAQAKSVLTFSDFVQDSIIAHR
EWLTELESQPPQADEWQHYAAWLQEALSNVSDEAGLMRELRLFRRRIMVR
IAWAQTLALVTEESILQQLSYLAETLIVAARDWLYDACCREWGTPCNAQG
EAQPLLILGMGKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFT
RMGQRLIKVLDQPTQDGFVYRVDMRLRPFGESGPLVLSFAALEDYYQEQG
RDWERYAMVKARIMGDSEGVYANELRAMLRPFVFRRYIDFSVIQSLRNMK
GMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQLIRGGREPSLQSCSLL
PTLSAIAALHLLSENDAEQLRVAYLFLRRLENLLQSINDEQTQTLPSDEL
NRARLAWAMDFADWPQLTGALTAHMNNVRRVFNELIGDDESETQEESLSE
QWRELWQDALQEDDTTPVLAHLSEDDRKQVLTLISDFRKELDKRTIGPRG
RQVLDHLMPHLLSDVCAREDAAVTLSRITALLVGIVTRTTYLELLSEFPA
ALNHLISLCAASPMIASQLARYPLLLDELLDPNTLYQPTATDAYRDELRQ
YLLRVPEDDEEQQLEALRQFKQAQLLRIAAADIAGTLPVMKVSDHLTWLA
EAMIDAVVQQAWVQMVARYGKPNHLNDREGRGFAVVGYGKLGGWELGYSS
DLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMHLFSTRTSSGILYE
VDARLRPSGAAGMLVTSTEAFADYQKNEAWTWEHQALVRARVVYGDPQLT
AHFDAVRREIMTLPREGRTLQTEVREMREKMRAHLGNKHRDRFDIKADEG
GITDIEFITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMAL
TRAYTTLRDELHHLALQELPGHVSGDCFTAERDLVRASWQKWLVEE
>SSO_4040 glnG, response regulator for gln
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDV
LLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFD
YLPKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAPAMQDV
FRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAI
PKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQT
RLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR
LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR
LAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAR
LLGWGRNTLTRKLKELGME
>SSO_0791 glnH, periplasmic glutamine-binding protein
MKSVLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGDKYVGFD
VDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKA
IDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANI
KTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGD
SLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTEPK
>SSO_4041 glnL, histidine protein kinase sensor for GlnG regulator
MATGTQPDAGQILNSLINSILLIDDNLAIHYANPAAQQLLAQSSRKLFGT
PLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMP
DGMILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRG
AAQLLSKALPDPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIH
KVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNAL
QALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTL
FYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIRK
>SSO_2367 hisJ, histidine-binding periplasmic protein of high-affinity histidine transport system
MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGELVG
FDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQ
QEIAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNE
HWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDY
KFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAK
KYFDFDVYGG
>SSO_1944 hnr, Hnr protein
MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF
TPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRL
GVEDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNP
AAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAF
YCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNH
LLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP
LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE
>SSO_4177 hydG, response regulator of hydrogenase 3 activity (sensor HydH)
MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVF
DLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGA
LDYLIKPLDFDNLQATLEKALAHTHSIDAETPAVSASQFGMVGKSPAMQH
LLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAA
LNESLLESELFGHEKGAFTGADRRREGRFVEADGGTLFLDEIGDISPMMQ
VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYY
RLNVVAIEVPSLRQRREDIPLLAVHFLQRFAERNRKAVKGFTPQAMDLLI
HYDWPGNIRELENAVERAVVLLTGEYISERELPLAIAGTPIPLGQSQDIQ
PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR
>SSO_4176 hydH, sensor kinase for HydG, hydrogenase 3 activity
MRFMQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRETAAARQTLL
EKGSVLIRALESGSRVGMGMRMHHAQQQALLEEMAGQPGVRWFAVTDEQG
TIVMHSNSGMVGKQLYSPQEMQQLHPGDEEAWRRIDSADGEPVLEIYRQF
QPMFAAGMHRMRHMQQYAATPQAIFIAFDASNIVSAEDREQRNTLIILFA
LATVLLASVLSFFWYRRYLRSRQLLQDEMKRKEKLVALGHLAAGVAHEIR
NPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKP
THLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL
TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLDA
IFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVT
ITRKGPQG
>SSO_2572 hyfR, putative 2-component regulator, interaction with sigma 54
MFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELH
VLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRT
HGCRFTPQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVL
VDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC
SDLSASHCACLPRNMPGDSVLLTQTLQTRQPTLTHRADDLFLWQRDPLLL
LLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRI
AIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGVGDIIYQSQAMEDL
LQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAI
PASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQP
KLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR
LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRSIDAIPTEALRQLMS
WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSHLLPTLNEDSALRSS
MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLS
RMQRLGLSVREVL
>SSO_0646 kdpD, sensor for high-affinity potassium transport system
MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAEAQRLRA
QGLDIVVGVVETHGRKDTAAMLEGLAVLPPKRLAYRGRHICEFDLDAALA
RRPALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESL
NDVVSGVTGIQVRETVPDPFFDAADDVVLVDLPPDDLRQRLKEGKVYIAG
QAERAIEHFFRKGNLIALRELALRRTADRVDEQMRAWRGHPSEEKVWHTR
DAILLCIGHNTGSEKLVRAAARLASRLGSVWHAVYVETPALHRLPEKKRR
AILSALRLAQELGAETATLSDPAEEKAVVRYAREHNLGKIILGRPASRRW
WRRETFADRLARIAPDLDQVLVALDEPPARTINNAPDSRSFKDKWRVQIQ
GCVVAAALCAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVV
ATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRY
QARVARYREQRTRHLYEMSKALAVGRSPQDIAATSEQFIASTFHARSQVL
LPDDNGKLQPLTHPQGMTPWDDAIAQWSFDKGLPAGAGTDTLPGVPYQIL
PLKSGEKTYGLVVVEPGNLRQLMIPEQQRLLETFTLLVANALERLTLTAS
EEQARMASEREQIRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPH
ARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQ
MLEPGLSSPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIG
IDAHFEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKESAVPGVGLGLA
ICRAIVDVHGGTITAFNRPEGGACFRVTLPQQTAPELEDFHEDM
>SSO_0645 kdpE, regulator of kdp operon
MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLII
LDLGLPDGDGIEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLS
KPFGIGELQARLRVALRRHSATAAPDPLVKFSDVTVDLAARVIHRGEEEV
HLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLR
QKLEQDPARPRHFITETGIGYRFML
>SSO_4223 lexA, regulator for SOS(lexA) regulon
MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL
ARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQV
DPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID
DEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGD
WL
>SSO_1956 narL, pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes
MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES
LDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALK
RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTE
RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKL
KSRVEAAVWVHQERIF
>SSO_2251 narP, nitrate/nitrite response regulator
MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR
LDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALID
AGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDP
FSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRS
RVAATILFLQQRGAQ
>SSO_2549 narQ, sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL)
MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAINIAGSLR
MQSYRLGYDLQSGSPQLNAHRQLFQQALHSSVLTNLNVWYVPEAVKTRYA
HLNANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLV
VAISLAGGIGIFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPL
DTSLPNELGLLAKTFNQMSSELHKLYLSLEASVEEKTRDLHEAKRRLEVL
YQCSQALNTSQIDVHCFRHILQIVRDNEAAEYLELNVGENWRISEGQPNP
ELPMQILPVTMQETVYGELHWQNSHVSSSEPLLNSVSSMLGRGLYFNQAQ
KHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIPEDNATAQS
IMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK
LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDG
NHTVYIRDNGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTL
VSISFRSAEGEESQLM
>SSO_1955 narX, nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator
MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSAHAINKA
GSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDEQLAQLQ
GLQDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIE
TVVLVHRVMAVFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQR
ANISGRNEMAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEHKNQILSF
LWQANRRLHSRAPLCERLSPVLNGLQNLTLLRDIELRVYDTDDEENHQEF
TCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRLADSHTQYGILLATLPQ
GRHLSHDQQQLLDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHD
SIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWAQLRELLT
TFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLL
QIAREALSNALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNH
YGMIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE
>SSO_4252 nrfB, formate-dependent nitrite reductase
MNMSVLRSLLTAGVLASGLLWSLNGITATPAAQASDDRYEVTQQRNPDAA
CLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMR
FNEPMYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQ
DTMQTLSDKGRIKICVDCHSDQRTNPNFNPASVPLLKEQP
>SSO_3536 ompR, response regulator
MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH
LMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGAD
DYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTR
EMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERS
IDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA
>SSO_0376 phoB, positive response regulator for pho regulon
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQLNEPWPDLI
LLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGAD
DYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGE
EPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIR
RLRKALEPGGHDRMVQTVRGTGYRFSTRF
>SSO_1039 phoH, PhoB-dependent, ATP-binding pho regulon component
MVTSCTGHVLDNQRATTRGVFSSGSHLVTLHFQPHPFFSCVTDAVNGARS
RFSAFYPKANYGLQGSQPSDVRAHNRAANGACDEYKQLKVLSMGRQKAVI
KARREAKRVLRRDSRSHKQREEESVTSLVQMGGVEAIGMARDSRDTSPIL
ARNEAQLHYLKAIESKQLIFATGEAGGGKTWISAAKAAEALIHKDVDRII
VTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPE
IGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIV
NGDITQCDLPRGVCSGLSDALERFEEDEMVGIVRFGKEDCVRSALCQRTL
HAYS
>SSO_1148 phoP, transcriptional regulatory protein
MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIV
DLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVT
KPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKL
TAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKK
IQAQYPQEVITTVRGQGYLFELR
>SSO_1147 phoQ, sensor protein PhoQ
MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFR
LLRGESNLFYTLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQR
DVPWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDD
DDAEMTHSVAVNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLS
ANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLNPATTRELTSL
VRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSV
SDAEPVMLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSA
LNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEI
SARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAR
EITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE
>SSO_0377 phoR, positive and negative sensor protein for pho regulon
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNL
LRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRF
RSGAESLPDAVVLTTEESGIFWCNGLAQQILGLRWPEDNGQNILNLLRYP
EFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQL
EGARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQT
QRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKKQT
FTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGA
EFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNH
HESRLNIESTVGKGTRFSFVIPERLIAKNSD
>SSO_2056 pocR, pdu/cob regulatory protein
MISAATLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQMM
RQHPQLSTRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLV
GFVLCGQVRLRNDDVDLVDILNVDDCWQADPELLNEFRKVPEMDYSRVMA
SADLLKLIVENCLKKQLNFVVIKENKSRSDSVRQTRAPNPHDNTVIFAKF
SVRLIRLRRRCIDSK
>SSO_1330 proQ, Activator of ProP osmoprotectant transporter
MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVDRVAGEM
NLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHAR
KQLEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPTTPRRKE
GAERKPRAQKPVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNA
MDATVLEITKDGVRVQLNSGMSLIVRAEHLVF
>SSO_1836 pspA, phage shock protein
MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARA
LAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDL
IKSLEHEVTLVNDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSR
DVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAEL
KADDAISEQLAQLKAKMKQDNQ
>SSO_1834 pspC, phage shock protein
MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLA
LFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLRE
MERYVTSDTFTLRSRFRQL
>SSO_1837 pspF, psp operon transcriptional activator
MANFIMAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELI
ASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGR
FERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLV
CATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAI
QMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNAVERSVYRHGTSDY
PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSL
QKGKYNQKRAAELLGLTYHQFRALLKKHQI
>SSO_3352 ptsN, phosphotransferase system enzyme IIA, regulates N metabolism
MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLSLPPQVV
FEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAID
NQPVDLLFALLVSADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELY
QIITDTEGTPDEA
>SSO_2986 ptsP, PTS system enzyme I
MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLADHDRRCY
YLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIP
SVKEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQM
AAILSQSQLTALFGQYRQTRIRALPAAPGVAIAEGWQDATLPLMEQVYQA
STLDPALERERLTGALEEAANEFRRYSKRFAAGAQKETAAIFDLYSHLLS
DTRLRRELFAEVDKGSVAEWAVKTVIEKFAEQFAALSDNYLKERAGDLRA
LGQRLLFHLDDANQGPNAWPERFILVADELSATTLAELPQDRLVGVVVRD
GAANSHAAIMVRALGIPTVMGADIQPSVLHRRTLIVDGYRGELLVDPEPV
LLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK
LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTL
DVGADKQLPYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATG
NLNILLPMVTSLDEVDEARRLIERAGREVEEMIGYEIPKPRIGIMLEVPS
MVFMLPHLAKRVDFISVGTNDLTQYILAVDRNNTRVANIYDSLHPAMLRA
LAMIAREAEIHGIDLRLCGEMAGDPMCVAILIGLGYRHLSMNGRSVARVK
YLLRRIDYAEAENLAQRSLEAQLATEVRHQVAAFMERRGMGGLIRGGL
>SSO_4377 ptxA, putative PTS system enzyme II A component
MKLRDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYYQAILDA
VEQHGPYFVLAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVD
ILITMAAVDANTHQEVGIMQIVNLFEDEENFDRLRACRTEQEVLDLIDRT
NAAA
>SSO_3164 qseB, quorum sensing regulator B
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVIL
DLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLC
KPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTL
KPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRK
LGSDFIRTVHGIGYTLGEK
>SSO_3165 qseC, quorum sensing regulator C
MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELFDTQLML
FAKRLSTLDLNEINAADRMAQTPNKLKHGHVDDDALTFAIFTHDGRMVLN
DGDNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWE
YREDMALAIVAGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRD
PDSEKPLNATGVPSEVRPLVESLNQLFARTHAMMVRERRFTSDAAHELRS
PLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLD
SLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTLNAHSIKRTGQP
LLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGVTPEALARI
GERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW
>SSO_2276 rcsB, positive response regulator for colanic capsule biosynthesis
MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDA
HVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLD
LDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKR
LSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIA
LLNYLSSVTLSPADKD
>SSO_2277 rcsC, sensor for ctr capsule biosynthesis
MFRALALVLWLLIAFSSVFYIVNALHQRESEIRQEFNLSSDQAQRFIQRT
SDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPLFADSDCSAMSN
TWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMPVE
RDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLA
NRLQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKG
DPRWMQERSWFGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLI
LNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASA
PVGICILRTADGVNILSNELAHTYLNMLTHEDRQRLTQIICGQQVNFVDV
LTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESLQEMAQAAEQA
SQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSS
LLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG
LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDY
LSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLIS
MMDGDISVDSEPGMGSQFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNA
SLCQFLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFC
RRHIGIPLEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALPSTD
KAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK
NHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLE
SGMDSCLSKPVTLDVIKQTLTVYAERVRKSRES
>SSO_2941 relA, (p)ppGpp synthetase I
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHP
DASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVG
KSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVV
IKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELED
YCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVY
GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHY
RHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELG
VAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQ
VFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQD
RDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGD
IRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVE
GVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPE
RIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASR
SDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>SSO_2696 rseA, sigma-E factor, negative regulatory protein
MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMRGDTPEV
LHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWHKMPFWQKVRPWAAQ
LTQMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSL
GVPSEATANNGQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQ
AAVQVPGLQTLGTQSQ
>SSO_2695 rseB, regulates activity of sigma-E factor
MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISI
NKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPF
TLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD
GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVISFNVNQDISSSMQT
LAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIE
SRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL
PPQTAKRIAENIKFGAAQ
>SSO_2694 rseC, sigma-E factor
MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLGPQTTHT
IVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLF
ASDVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPDLVRF
ETSSEDASQ
>SSO_1552 rstA, response transcriptional regulatory protein (RstB sensor)
MNVMNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPD
LVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACD
YILKTTPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTID
PINRVVTLANTEISLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDG
LDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE
>SSO_1551 rstB, sensor histidine protein kinase
MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMNSSLYLM
RSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEI
VALDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALITFIAISLA
FPVFIWMRPHWQDMLKLEAAAQRFGDGHLNERIHFDEGSSFERLGIAFNQ
MADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDNLSAAESQALNR
DISQLEALIEELLTYARLDRPQNELHLSEPDLPLWLSTHLADIQAVTPDK
TVRIKTLAQGHYAALDMRLMERVLDNLLNNALRYCHSTVETSLLLSGNRA
TLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLAIVHSIALA
MGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA
>SSO_2232 rtn, conserved hypothetical protein
MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYDTLIIDV
QKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVK
DKKTFCSSATGEMDIPLNELIPALNINKNVDMAILPGTPMVPNKPAIVIW
YRNPLLKNSGVFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSR
LMNVNELTDMPVRETKIAGIPLTVRLYADDWTWNDVWYAFLLGGMSGTVV
GLLCYYLMSVRMRPGREIMTAIKREQFYVAYQPVVDTQALRVTGLEVLLR
WRHPVAGEIPPDAFINFAESQKMIVPLTQHLFELIARDAAELEKVLPVGV
KFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERDMLKEQEAT
QLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTET
ITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRP
LPLDDFVRWLKKPYTPQW
>SSO_3755 spoT, (p)ppGpp synthetase II
MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPV
AVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGV
SKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSL
RPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKE
VVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLK
EQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKA
NGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTT
AQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVEL
PAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG
ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKL
NEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPP
ATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCR
NIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTT
TSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN
RN
>SSO_1414 spy, periplasmic protein related to spheroblast formation
MRKLTALFVASTLALGAANLAHAADTTTAAPADAKPMMHHKGKFGPHQDM
MFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKAK
AEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERP
AAR
>SSO_1232 tap, methyl-accepting chemotaxis protein IV
MFNRIRISTTLFLILILCGILQIGSNGMSFWAFRDDLQRLNQVEQSNQQR
AALAQTRAVMLQASTALNKAGTLTALSYPADDIKTLMTTARASLTQSTTL
FKSFMAMTAGNEHVRALQKETEKSFARWHNDLEHQATWLESNQLSDFLTA
PVQGSQNAFDVNFEAWQLEINHVLEAASAQSQRNYQISTLVFISMIIVAA
IYISSALWWTRKMIVQPLAIIGSHFDSIAAGNLARPIAVYGRNEITAIFA
SLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQ
TAASMEQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEI
ATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVR
NLASRSAQAAKEIKGLIEESVNRVQQGSKLVNNAAATMIDIVSSVTRVND
IMGEIASASEEQQRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQ
ADHLSSRVAVFTLEEHEVARHESAQLQIAPVVS
>SSO_1231 tar, methyl-accepting chemotaxis protein II
MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSNQLREQQ
GELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDSARKTLAQA
ATHYKKFKSMAPLPEMVATSRNIDEKYKNYYTALTELIDYLDYGNTGAYF
AQPTQGMQNAMGEAFAQYALSSEKLYRDIVTDNADDYRFAQWQLAVIALV
VVLILLVAWYGIRRMLLTPLAKIIAHIREIAGGNLANTLTIDGRSEMGDL
AQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASAL
EETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMH
EIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGE
VRNLASRSAQAAKEIKALIEDSVARVDTGSVLVESAGETMNNIVNAVTRV
TDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALE
EQASRLTQAVSAFRLAASPLTNKPQTPSRPASEQPPAQPRLRIAEQDPNW
ETF
>SSO_1003 torR, response transcriptional regulator for torA
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLI
LLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYV
TKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLE
RDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVD
VLIRRLRHKLSADLLVTQHGEGYFLAADVC
>SSO_1001 torS, sensor protein torS
MGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASA
WELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIE
QQEQEISRSLRQQGELVGRRLQLRQQQQQLSQQIVAAADEIARLAQGQAN
NATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSA
LRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVA
TTLTTVSQYSDLLALFQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDT
IELRNQHGLAHQEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPL
AEQTQALQRLLDGDIDSPFPETAGVRELDTIGQLMGAFRSSVHALNRHRE
QLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLY
GILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGK
NVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPR
RIRQVITNLLSNALRFTDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLA
EIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRL
PLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVA
VGNAAQALETLQNSEPFAAALVDFDLPDVDGITLARQLAQQYPSLVLIGF
SAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQVNNDQSLDV
SQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIKRAAH
QLKSSCLSLGMRIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKD
LNAI
>SSO_1721 trg, methyl-accepting chemotaxis protein III
MNTTPSQRLGFLHHIRLVPLFACILGGILVLFALSSALAGYFLWQADRDQ
RDVTAEIEIRTGLANSSDFLRSARINMIQAGAASCIAEMEAMKRNIAQAE
SEIKQSQQGYRAYQNRPVKTPADEALDTELNQRFQAYITGMQPMLKYAKN
GMFEAIINHESEQIRPLDNAYTDILNKAVKIRSTRANQLAELAHQRTRLG
GMFMIGAFVLALVMTLITFMVLRRIVIRPLQHAAQRIEKIASGDLTMKDE
PAGRNEIGRLNRHLQQMQHSLGMTVGTVRQGAEEIYRGTSEISAGNADLS
SRTEEQAAAIEQTAASMEQLTATVKQNADNAHHASKLAQEASIKASDGGQ
TVSGVVKTMGAISTSSKKISEITAVINSIAFQTNILALNAAVEAARAGEQ
GRGFAVVASEVRTLASRSAQAAKEIEGLISESVRLIDLGSDEVATAGKTM
STIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVE
EASAAAVSLEEQAARLTEAVDVFRLHKHSVSAEPRGAGEPVSFATV
>SSO_3623 uhpA, response regulator, positive activator of uhpT transcription (sensor, uhpB)
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQV
CICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLS
KRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLA
QGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW
>SSO_3622 uhpB, sensor histidine protein kinase phosphorylates UhpA
MMKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFPFGLRL
GLMLQCPRGYWPVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVAL
ISRYRHQRDWRTLLLQGAALTAAALLQSLPWLWHGKESWNALLLTLTGGL
TLAPICLVFWHYLANNTWLPLGPSLVSQPINWRGRHLVWYLLLFVISLWL
QLGLPDELSRFTPFCLVLPIIALAWHYGWQGALIATLMNAIALIASQTWR
DHPVDLLLSLLVQSLTGLLLGAGIQRLRELNQSLQKELARNQHLAERLLE
TEESVRRDVARELHDDIGQTITAIRTQAGIVQRLAADNASVKQSGQLIEQ
LSLGVYDAVRRLLGRLRPRQLDDLTLEQAIRSLMREMELEGRGIVSHLEW
RIDESALSENQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVI
EDDGSGLPPGSGQQGFGLTGMRERVTALGGTLHISCLHGTRVSVSLPQRY
V
>SSO_1174 umuD, UmuD
MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSA
TYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQ
LRPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR
>SSO_3730 uspA, universal stress protein
MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGL
IDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIK
KYDMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE
>SSO_1204 uvrY, putative 2-component transcriptional regulator
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDV
VLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAG
YLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASL
SERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL
THLAIRHGLCNAETLSSQ
>SSO_3777 waaP, lipopolysaccharide core biosynthesis protein
MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLK
WHRGTTLKEIIKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAFGEK
GINPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMV
RDMHAVGINHRDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRR
WRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFVAPLKDILKQEQGLLSQAE
AKATKIRERTIRKSL
>SSO_2114 wzb, probable protein-tyrosine-phosphatase
MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKGADPTAI
SVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGK
VMLFGHWDNECEIPDPYRKSRETFAAVYTLLERSARQWAQALNAEQV
>SSO_0175 yaeG, conserved hypothetical protein
MHNGGLMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI
GELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGL
TGEPENLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEE
NTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDSAMAELQQLQNALTT
PERNNLVAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLITRMKEYGQL
RFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVL
LDSLRGDWQANELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKAL
FIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER
>SSO_0360 yaiC, conserved hypothetical protein
MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLA
GMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIY
NLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLM
VVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLA
EHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDID
HFKSINDTWGHDVGDEAIVALTRQLQITLRGSG
>SSO_0521 ybcZ, putative 2-component sensor protein
MVSKPFQRPFSLATRLTFFISLATIAAFFAFAWIMIHSVKVHFAEQDIND
LKEISATLERVLNHPDETQARRLMTLEDIVSGYSNVLISLADSHGKTVYH
SPGAPDIREFTRDAIPDKDAQGGEVYLLSGPTIMMPGHGHGHMEHSNWRM
INLPVGPLVDGKPIYTLYIALSIDFHLHYINDLMNKLIMTASVISILIVF
IVLLAVHKGHAPIRSVSRQIQNITSKDLDVRLDPQTEPIELEQLVLSFNH
MIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDV
LYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFE
ALAEDRGVELRFVGDKCQVAGDPLMLRRALSNLLSNALRYTPTRETIVVR
CQTVDHQVQVTVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLA
IVKSIVVAHKGTVAVTSDARGTRFVIMLPERE
>SSO_0559 ybdQ, conserved hypothetical protein
MYKTIIMPVDVFEMELSDKAVRHAEFLAQDDGVIHLLHVLPGSASLSLHR
FAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNEL
AEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVIR
>SSO_0609 ybeJ, putative periplasmic binding transport protein
MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVVGHRESS
VPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIP
LLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFAD
LKDKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHSDSFRTLESGRAV
AFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRKDDPQFKKLMD
DTTAQVQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFKEPNDKA
LN
>SSO_0614 ybeZ, putative ATP-binding protein in pho regulon
MFSFRRHTDKRNGLNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLG
IEINRRDNHFKLTGRPICVTAAADILRSLYVDTAPMRGQIQDIEPEQIHL
AIKEARVLEQSAESVPEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDI
TFGVGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGD
LSQKVDPYLRPLYDALFEMLGFEKVEKLIERNVIEVAPLAYMRGRTLNDA
FIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDLPRNTKSGLRHA
IEVLADVEEISFNFFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAALAAE
RKREEQEQK
>SSO_0782 ybiI, conserved hypothetical protein
MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQAR
REAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
>SSO_0989 yccY, putative phosphatase
MDSNMAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGLIK
HPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTA
IAPEVRGKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKRL
SR
>SSO_1800 ydaA, conserved hypothetical protein
MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDFSYEMTT
LLSPDERTAMRQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHNRPFEAI
IQEVISGGHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPW
PEGGKALVAVNLASEEPYHNALNEKLVKETIELAEQVNHTEVHLVGAYPV
TPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFGINENMTHVEKGLP
EEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIK
PDQYQTPVELDDEEDD
>SSO_1593 ydeH, conserved hypothetical protein
MIKKTTEIDAILLNLNKAIDAHYQWLVSMFHSVVARDASKPEITDNHSYG
LCQFGRWIDHLGPLDNDELPYVRLMDSAHQHMHNCGRELMLAIVENHWQD
AHFDAFQEGLLSFTAALTDYKIYLLTIRSNMDVLTGLPGRRVLDESFDHQ
LRNTDPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYE
TVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHSEGHINITVT
AGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDEQNVINRV
>SSO_1379 yeaG, conserved hypothetical protein
MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLMAIGEPV
MVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLE
EKKQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFC
LFNPQEDAQILEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVW
PSILQQIAIAKTEPGDENNQDISALVGKVDIRKLEHYAQNDPDAYGYSGA
LCRANQGIMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGISALPFNGIIL
AHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLRISEEIKIYEKLLNHSE
LTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGESLKDTDPKA
KSYQEYRDYAGVDEGMKGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVL
EQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQ
NIFDRYVTYADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPK
DFRNEIVNFVLRARANNSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVIS
FNAKTSTDEQKKHDDFVDRMMEKGYTRKQVRLLCEWYLRVRKSS
>SSO_1377 yeaI, conserved hypothetical protein
MIQSTRISMGLFFKYFLSLTKIDPGQNYISLPSIKSSTHIALLFMVSMGT
QKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFL
NAVIFLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGST
LIQTKSNDVSIFYIFRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLA
LIPFLVFPLLAHNLSSYNADYSLYVVDYCPDNHTATWGINYTKILVCLWA
FLLFFIIMRTRLASELWPLIALLCLASLCCNLLLLTLDEYNYTIWYISRG
IEVSSKLFVVSFLIYNIFQKLQLSSKLAVHDVLTNIYNRRYFFNSVESLL
SRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQQSIRPDDI
LARLEGEVFGLLFTELNSAQAKIIAERMRKNVELLTGFSNRYDVPEQMTI
SIGTVFSTGDTRNISLVMTEADKALREAKSEGGNKVIIHHI
>SSO_1375 yeaJ, conserved hypothetical protein
MLTSSFLIFELVASDRAMSAYLRYIVQKADSSFLYDKYQNQSIAAHVMRA
LAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHKYPGLRGTLQTASTDC
DTIVEAAALLPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDLNDRYVYF
YEPVNVEYFAMNNWSFLQSGSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQ
NVMSLLTPVYVAGQLKGIVLLDINKNNLRNIFYTHDRPLLWRFLNVTLTD
TDSGRDIIINQSEDNLFQYVSYVHDLPGGIRVSLSIDILYFITSSWKSVL
FWILTALILLNMVRMHFRLYQNVSRENISDAMTGLYNRKILTPELEQRLQ
KLVQSGSSVMFIAIDMDKLKQINDTLGHQEGDLAITLLAQAIKQSIRKSD
YAIRLGGDEFCIILVDSTPQIAAQLPERIEKRLQHIAPQKEIGFSSGIYA
MKENDTLHDAYKASDERLYVNKQNKNSRS
>SSO_1367 yeaP, conserved hypothetical protein
MQHYFYYIHSKHITSCFIFVGDVLSCLQRLNNQHLPAVSWSCFVSDQIIA
RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFAR
NSQKMHIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGIS
TFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKE
ALVEQLREANAALIAQSYTDSLTGLPNPRAIFENLTTLFSLARHLNHKIM
IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF
LVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET
TDADSALHAADIAMYQEKKHKQKTPFVAHSAPHC
>SSO_1222 yecG, putative regulator
MSYSNILVAVAVTPESQQLLAKAVSIARPVKGHISLITLASDPEMYNQLA
APMLEDLRSVMQEETQSFLDKFIQDAGYPVDKTFIAYGELSEHILEVCHK
HHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLTGD
>SSO_2026 yedV, putative 2-component sensor protein
MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTTLINRTA
QIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDGINKIVNRTNVSDDM
LNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASAR
HNMLEQYKINSIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYN
DSREPVEVSALPRELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTP
INALLGQNQVTLSQTRSIAEYQKTIAGNIEELENISRLTENILFLARADK
NNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICFKVECNQQIFADKILLQ
RMLSNLIVNAIRYSPEKSRIHITSFLDTNGYLNIDVASPGTKIHEPEKLF
RRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRIMLPQ
RN
>SSO_2027 yedW, putative 2-component transcriptional regulator
MVRRLRFSGPKTSIICTPMTSLKTSIKTITYLSDTGCLEIQGASLVSITY
DLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD
DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSG
ANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRNN
ISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIR
RLRAKVDDPFPEKLIATIRGMGYSFVAVKK
>SSO_2120 yegE, putative sensor-type protein
MSKQSQHVLIALPHPLLHLVSLGLVSFIFTLFSLELSQFGTQLAPLWFPT
SIMMVAFYRHAGRMWPGIALSCSLGNIAASILLFSTSSLNMTWTTINIVE
AVVGAVLLRKLLPWYNPLQNLADWLRLALGSAIVPPLLGGVLVVLLTPGD
DPLRAFLIWVLSESIGALALVPLGLLFKPHYLLRHRNPRLLFESLLTLAI
TLTLSWLSMLYLPWPFTFIIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMM
AADPSLLATPRTYLMSHMPWLPFLLILLPANIMTMVMYAFRAERKHISES
ETRFRNAMEYSAIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQL
TWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALLAVSLVRHT
DGTPLYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWERELKPN
VFSWDKRMFELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSP
FKLEFRITVKDGIRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNEAL
FQEKERLHITLDSIGEAVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPL
LTVLHITFGDNGPLMENIYSADTSRSAIEQDVVLHCRSGGSYDVHYSITP
LSTLDGSNIGSVLVIQDVTESRKMLRQLSYSASHDALTHLANRASFEKQL
RILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSM
LRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAVNDYHFIWEGRVH
RVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTVYEPQQAAA
HSERAAMSLDEQWRMIKENQLMMIAHGVASPRIPEARNLWLISLKLWSCE
GEIIDEQTFRRSFSDPALSHALDRRVFHEFFQQAAKAVASKGISIALPLS
VAGLSSATLVNDLLEQLENSPLPPRLLHLIIPAEAILDHAESVQKLQLAG
CRIVLSQVGRDLQIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQ
GHAQRLGMKTIAGPVVLPLVMDTLSGIGVDLIYGDVIADAQPLDLLVNSS
YFAIN
>SSO_2171 yehT, conserved hypothetical protein
MEGRGMIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHK
LRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHA
FDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRI
YLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQY
LVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
>SSO_2172 yehU, putative 2-component sensor protein
MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKFLCYIVF
SIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRY
SMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVA
EMVQMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAM
FEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAI
TDREKLLAFTGIGDDHHLPGKPISSPYTLKAIETGEVVYADGNEVPYRCS
LHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQL
LSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSE
QASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQV
NIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHL
MLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTR
ITLRLPWRDEA
>SSO_2219 yeiL, putative transcriptional regulator
MSESAFKDCFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTRGRARLY
ATLANGRVSLIDFFAAPCFIGEIELIDKDHEPRAVQAIEECWCLALPMKH
YRPLLLNDTLFLRKLCVTLSHKNYRNIVSLTQNQSFPLVNRLAAFILLSQ
EGDLYHEKHTQAAEYLGVSYRHLLYVLAQFIHDGLLIKSKKGYLIKNRKQ
LSGLALEMDPENKFSGMMQ
>SSO_2637 yfhA, putative 2-component transcriptional regulator
MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKV
DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGV
FSFLTKPVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQA
RLVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQL
LESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLR
VLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYRLNVV
SLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWP
GNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFEL
NYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE
>SSO_2639 yfhK, putative 2-component sensor protein
MLYLNFPSVSIRLFASDESNTLKRWPVFPRSLRQLVMLAFLLILLPLLVL
AWQAWQSLNALSDQAALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLD
DPTLAKVYQSQRKRYSEMLDAHAGVLPDDKLYQALRQDLNNLAQLQCNNS
GPDAAAAARLEAFASANTEMVQATRTVVFSRGQQLQREIAERGQYFGWQS
LVLFLVSLVMVLLFTRMIIGPVKNIERMINRLGEGRSLGNSVSFSGPSEL
RSVGQRILWLSERLSWLESQRHQFLRHLSHELKTPLASMREGTELLADQV
VGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQADSAVELENVELAP
LVETVVSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNAVHY
GAESGNICLRSSSHGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKG
AVKGSGLGLSIARDCIRRMQGELYLVDESGQDVCFRIELPSSKNTK
>SSO_2761 yfiN, conserved hypothetical protein
MTYSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNILASWHYTR
KDPGDTFSNFISHWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFS
LAVLTGCILLASGIAITLTRHLHNGLVEALKNITDVVHDVRSNRNFSRRV
SEERIAEFHRFALDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLAN
RAAFRSGINTLMNNSDARKTSALLFLDGDNFKYINDTWGHATGDRVLIEI
AKRLAEVGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPF
DLHNGHQTTMTLSIGYAMTIEHASAEKLQELADHNMYQAKHQRAEKLVR
>SSO_2853 ygaA, putative 2-component transcriptional regulator
MSSQNDYQSNGRYDNIYSQIDSEAKMSFSVDVLANIAIELQRGIGHQDRF
QRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPR
LEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLI
GALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMMPGD
ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA
KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF
EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLA
ATNRDLREEVMAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ
CRLRLGLSRVVLSAGARNLLQHYRFPGNVRELEHAIHRAVVLARATRNGD
EVILEAQHFAFPEVTLPPPEAAAVPVVKQNLREATEAFQRETIRQALAQN
HHNWAACARMLETDVANLHRLAKRLGMKD
>SSO_2831 ygaG, conserved hypothetical protein
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPE
RGIHTLEHLFAGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRV
ADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERD
VRINSNEELALPKEKLQELHI
>SSO_3020 ygeV, putative transcriptional regulator
MELATTQSVLMQIQPTIQRFARMLASVLQFEVEIVDENLCRVAGTGAYGK
FLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLG
TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLE
DQGPGDNISKIFATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNI
IGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMA
FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG
ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFT
GASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS
SPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED
IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL
VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE
MEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT
>SSO_3192 ygiM, conserved hypothetical protein
MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDHYRLVGTV
NAGEEVTLLQTDANTNYAQVKDSSGRTAWIPLKQLSTEPSLRSRVPDLEN
QVKTLTDKLTNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNELIV
AQKKVDAASVQLDDKQRTIIMQWFMYGGGVLGLGLLLGLVLPHLIPSRKR
KDRWMN
>SSO_3393 yhdA, conserved hypothetical protein
MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAID
THLVSNDFSTLRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGS
SDLFRELSVPLIKHPGMSLRLVYQDPMGNYFHSLMTTAPLTGAIGFIIVM
LFLAVRWLQRQLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALD
TLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLFFDNQLATLLEDQE
KVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYPGAL
LARYHRSDFAALLPHRTLKEAESIAGQLIKAVDTLPNNKMLDRDDMIHIG
ICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWR
TLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPM
VLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRD
TLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGL
TLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTHV
YATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV
>SSO_3409 yhdW, putative periplasmic binding transport protein
MQCGISDGLPGFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVKYTPLTA
KERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTDYDGIGFLTHDKA
GLKSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKA
LESGRCDTLASDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDD
EWFSIVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAHLLGKEGDYGK
DLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGIQY
APPVR
>SSO_3871 yhjB, putative regulator
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALV
MLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAI
VPRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREIL
TMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS
>SSO_3866 yhjH, conserved hypothetical protein
MMIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRLMAVEL
LTVVTHPLNPSQRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFVEHD
LLASVNIDGPTLIALRQQPKILRQIERLPWLRFELVEHIRLPKDSTFASM
CEFGPLWLDDFGTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFS
QLLHLMNRYCRGVIVEGVETPEEWRDVQNSPAFAAQGWFLSRPAPMETLN
TAVLAL
>SSO_3862 yhjK, conserved hypothetical protein
MAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTATQLESIARSVREPLSSAI
LKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIPERPVPIMVT
RLFELPVQISLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLVT
IYLLLSLILTVAISWCINRLILHPLRNIARELNAIPAQELVGHQLALPRL
HQDDEIGMLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLPNKALLMEMLE
QVVARKQTTALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRM
ILAQISGYDFAVIANGVQEPWHAITLGQQVLTIMSERLPIERIQLRPHCS
IGVAMFYGDLTAEQLYSRAISAAFTARHKGKNQIQFFDPQQMEAAQKRLT
EESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDG
LIDRIECCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQLMHP
NMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRV
ALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPEDSSMIAAIIMLA
QSLNLQMIAEGVETEAQRDWLAKAGVGIAQGFLFAHPLPIEIFEESYLEE
K
>SSO_4043 yihK, putative GTP-binding factor
MDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMV
DSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVD
QVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVD
HVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS
EGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQ
NVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHN
VALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREI
DGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYV
IPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNG
QGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKK
LTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHL
TENDRRRANRAPKDD
>SSO_4083 yiiO, Uncharacterized periplasmic protein
MMRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRSTQSHMFDGI
SLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQA
EKMANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQW
QKSSSLKLLSSSNSRSQ
>SSO_4092 yiiT, putative regulator
MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGI
YFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQ
KEQCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPFIDK
>SSO_4175 yjaI, conserved hypothetical protein
MSKNDSLPAAGESFLLVYHARLPVISAFHRWHGRCNTRSKTTTGGLTMKR
NTKIALVMMALSAMAMGSTSAFAHGGHGMWQQNAAPLTSEQQTAWQKIHN
DFYAQSSALQQQLVTKRYEYNALLAANPPDSSKINAVAKEMENLRQSLDE
LRVKRDIAMAEAGIPRGAGMGMGYGGCGGGGHMGMGHW
>SSO_4241 yjcC, conserved hypothetical protein
MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRTFAQLAL
DKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYAR
DNHFLCSSLIAPVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQR
GNYVAVINPLFWSEVMSDDPTLQWGVYDTVTKTFFSLSKEASAATFSPLI
HLKDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLITHFYNHLIFALPAG
ILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCI
GAEALLRWLGEQGQIMNPAEFIPLAEKEGMIEQITDYVIDNVFRDLGAYL
ATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFL
DVEKMTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVE
TLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQG
WFFAKAMPPQVFMQWMEQLPARELTRGQ
>SSO_4301 yjdG, putative 2-component transcriptional regulator
MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPI
DLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGV
VDYLIKPFQASRFEEALTDWRQKKMALEKHQYYDQAELDQLIHGSSSNEQ
DPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLI
WLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ
>SSO_4302 yjdH, putative 2-component sensor protein
MRHSLPYRMLRKRPMKLSTTVILMVSAVLFSVLLVVHLIYFSQISDMTRD
GLANKALAVARTLANSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVV
TDMQSLRYSHPEAQRIGQPFKGDDILKALNGKENVAINRGFLAQALRVFT
PIYDENHKQIGVVAIGLELSRVTQQINDSRWSIIWSVLFGMLVGLIGTCI
LVKVLKKILFGLEPYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDA
AQELLNYRKSQDDEKLSTLSHSWSQVVDVSEVLRDGTPRRDEEITIKDRL
LLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRLDGLVNYADALRERSHE
FMNKLHVILGLLHLKSYKQLEDYILKTANNYQEEIGSLLGKIKSPVIAGF
LISKINRATDLGHTLILNSESQLPDSGSEDQVATLITTLGNLIENALEAL
GPEPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSER
GVGLALVKQQVENLGGSIAVESEPGIFTQFFVQIPWDGERSNR
>SSO_4487 yjiY, putative carbon starvation protein
MPGFTMDTKKLFKHIPWVILGIIGAFCLAVVALRRGEHVSALWIVVASVS
VYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHF
AAIAGAGPLVGPVLAAQMGHLPGTLWLLAGVVLAGAVQDFMVLFISSRRN
GASLGEMIKEEMGPVPGTIALFGCFLIMIIILAVLALIVVKALAESPWGV
FTVCSTVPIALFMGIYMRFIRPGRVGEVSVIGIVLLVASIYFGGVIAHDP
YWGPALTFKDTTITFALIGYAFVSALLPVWLILAPRDYLATFLKIGVIVG
LALGIVVLNPELKMPAMTQYIDGTGPLWKGALFPFLFITIACGAVSGFHA
LISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIEPGLYFAM
NTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPE
QILQTAKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGIL
FEALFILTALDAGTRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGTAGCVG
LWGYLLYQGVVDPLGGVKSLWPLFGISNQMLAAVALVLGTVVLIKMKRTQ
YIWVTVVPAVWLLICTTWALGLKLFSTNPQMEGFFYMASQYKEKIANGTD
LTAQQIANMNHIVVNNYTNAGLSILFLIVVYSIIFYGFKTWLAVRNSDKR
TDKETPYVPIPEGGVKISSHH
>SSO_0444 ylaB, conserved hypothetical protein
MLVRTRHLVGLISGVLILSVLLPVGLSIWLAHQQVETSFIEELDTYSSRV
AIRANKVATQGKDALQELERWQGAACSEAHLMEMRRVSYSYRYIQEVVYI
DNNVPQCSSLEHESPPDTFPEPGKISKDGYRVWLTSHNDLGIIRYMVAMG
TAHYVVMIDPASFIDVIPYSSWQIDAAIIGNAHNVVITSSDEIAQGIITR
LQKTPGEHIENNGIIYDILPFPEMNISIITWASTKMLQKGWHRQVFIWLP
LGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLANGK
IVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSAFEDMGD
WLRQHPQQHISINLESTVLTSEKIPQLLREMINQSG
>SSO_0522 ylcA, putative 2-component transcriptional regulator
MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIIL
DIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLV
KPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRIT
LTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRG
KIDNDFEPKLIQTVRGVGYMLEVPDGQ
>SSO_1749 ynaF, putative filament protein
MNSVITQKVSSGVTLYADTKTGGFMNRTILVPIDISDSELTQRVISHVEA
EAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEII
KKFKLPTDRVHVHVEEGSPKDRILELAKKIPAHMIIIASHRPDITTYLLG
SNAAAVVRHAECSVLVVR
>SSO_2275 yojN, putative 2-component sensor protein
MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKS
YQIVDITHAIQKRVDTWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVY
YLEKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNG
QDNSLVLISTLPLKDLTSGFKESTVSDIVDSRRAEMLQQANALDERESFS
NMRRLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIPPGMPLDSFRL
EPDTTATGDNDNEKEGTDSVSIHFNSTKIEISSALNSTDMRLVWQVPYGT
LLLDTLQNILLPLLLNIGLLALALFGYTTFRHFSSRSTESLPNTAVNNEL
RILRAINEKIVSLLPLGLLVHDQESNRTVISNKIADHLLPHLNLQNITTM
AEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQ
AQRLYEKNQQGRMTFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQAD
VLVRLVDEIQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQ
LLINNHLKAHDMRRGDRDALRRILLLLMQYAVTSTQLGKITLEVDQDESS
EDRLTFRILDTGEGVSIHEMDNLHFPFINQTQNDRYGKADPLAFWLSDQL
ARKLGGHLNIKTRDGLGTRYSVHIKMLAAGPEVEEEEERLLDDVCVMVDV
TSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNPSNLTASGLLL
SDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLGGD
ENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAM
LNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL
>SSO_3006 yqeH, conserved hypothetical protein
MTSSITNEIMQLYTDREVLNMGLCSRYKSLTCNSCSMHCQIMPEESPRLQ
YCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLF
LEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNTAISAVIYNDDGLDV
ANEKIRQLFIGRYLSFTRGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI
RSIYAYKQRIEKRMGGKINELFIRSHSVQH