Gene list
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COG category: Signal transduction mechanisms
Organism: Shewanella oneidensis MR-1, MR-1
Number of genes found: 304
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| Shewanella oneidensis MR-1, MR-1 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| SO0013 | hypothetical protein | chromosome | CDS | 14311 | 801 | + | 0.460674 | ||
| SO0056 | transporter, putative | SubName: Full=ABC-type transport system substrate binding component; | chromosome | CDS | 63429 | 759 | + | 0.498024 | |
| SO0060 | sensor histidine kinase | SubName: Full=Two component signal transduction system controlling the osmosenstive K+ channel histidine kinase KdpD; EC=2.7.13.3; | chromosome | CDS | 67096 | 1047 | - | 0.495702 | |
| SO0091 | hypothetical protein | SubName: Full=Cyclic nucleotide binding domain protein; | chromosome | CDS | 99494 | 597 | - | 0.321608 | |
| SO0111 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 121746 | 615 | - | 0.458537 | |
| SO0141 | sensory box protein | SubName: Full=Nitrate/nitrite-responsive bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain; EC=2.7.7.65; | chromosome | CDS | 146606 | 3234 | - | 0.462276 | |
| SO0159 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 165737 | 357 | + | 0.431373 | |
| SO0341 | sensory box protein | SubName: Full=Multifunctional sensory protein/diguanylate cyclase/signalling protein with EAL domain; EC=2.7.7.65; | chromosome | CDS | 341460 | 4548 | - | 0.459543 | |
| SO0351 | DNA-binding response regulator, LuxR family | SubName: Full=Two component signal transduction system response regulator LuxR family; | chromosome | CDS | 358578 | 597 | - | 0.519263 | |
| SO0352 | sensor histidine kinase, putative | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 359174 | 1080 | - | 0.457407 | |
| SO0427 | sensory box protein | SubName: Full=Bifunctional diguanylate cyclase / phosphodiesterase with PAS sensory domain; EC=2.7.7.65; | chromosome | CDS | 444828 | 4476 | + | 0.442583 | |
| SO0437 | sensory box protein | RecName: Full=Cyclic di-GMP phosphodiesterase PdeB; EC=3.1.4.52; AltName: Full=Phosphodiesterase biofilm protein; | chromosome | CDS | 461211 | 2571 | + | 0.464022 | |
| SO0497 | hypothetical protein | SubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; | chromosome | CDS | 521627 | 1962 | + | 0.476555 | |
| SO0500 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer with 4HB_MCP sensory domain; | chromosome | CDS | 525133 | 1632 | - | 0.49326 | |
| SO0533 | arsenate reductase, putative | SubName: Full=Thioredoxin-coupled cytoplasmic arsenate reductase ArsC2; | chromosome | CDS | 554287 | 516 | + | 0.46124 | |
| SO0544 | sensory box histidine kinase | SubName: Full=Two component signal transduction system histidine kinase with CHASE and PAS sensory domains; EC=2.7.13.3; | chromosome | CDS | 564464 | 2154 | + | 0.436862 | |
| SO0545 | response regulator | chromosome | CDS | 567052 | 1728 | + | 0.427083 | ||
| SO0549 | chemotaxis protein CheY/response regulator receiver domain protein | chromosome | CDS | 571288 | 804 | - | 0.446517 | ||
| SO0555 | conserved hypothetical protein | SubName: Full=Bifunctional diguanylate cyclase/phosphodiesterase; | chromosome | CDS | 574760 | 1755 | - | 0.464387 | |
| SO0569 | sensory box/GGDEF family protein | SubName: Full=Diguanylate cyclase with PAS sensory domain; EC=2.7.7.65; | chromosome | CDS | 589618 | 975 | - | 0.45641 | |
| SO0570 | response regulator | SubName: Full=Chemotaxis signal transduction system inhibitor of MCP methylation CheC; | chromosome | CDS | 590611 | 996 | - | 0.452811 | |
| SO0576 | PhoH family protein | SubName: Full=Predicted ATPase PhoH family; | chromosome | CDS | 597575 | 1395 | + | 0.455914 | |
| SO0577 | sensory box histidine kinase/response regulator | chromosome | CDS | 599381 | 3567 | + | 0.495935 | ||
| SO0579 | serine/threonine protein kinase, putative | SubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; | chromosome | CDS | 605524 | 1809 | - | 0.466003 | |
| SO0584 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer with PAS sensory domain; | chromosome | CDS | 609335 | 1575 | + | 0.47619 | |
| SO0621 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 648335 | 1329 | - | 0.47705 | |
| SO0622 | DNA-binding response regulator | SubName: Full=Two component signal transduction system response regulator; | chromosome | CDS | 649660 | 675 | - | 0.463704 | |
| SO0628 | GGDEF domain protein | SubName: Full=Bifunctional diguanylate cyclase/phosphodiesterase; | chromosome | CDS | 653468 | 2187 | + | 0.468679 | |
| SO0661 | zinc finger-related protein | SubName: Full=Mu phage mom transcriptional regulator Com; | chromosome | CDS | 681856 | 213 | + | 0.511737 | |
| SO0670 | hypothetical protein | SubName: Full=Mu phage uncharacterized protein; | chromosome | CDS | 688755 | 894 | - | 0.410515 | |
| SO0736 | conserved hypothetical protein | RecName: Full=Uncharacterized protein SO_0736; Flags: Precursor; | chromosome | CDS | 750477 | 795 | - | 0.41761 | |
| SO0796 | GGDEF family protein | chromosome | CDS | 808860 | 912 | - | 0.440789 | ||
| SO0816 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 829377 | 729 | + | 0.45679 | |
| SO0841 | GGDEF domain protein | SubName: Full=Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase; EC=2.7.7.65; | chromosome | CDS | 861295 | 1470 | + | 0.435374 | |
| SO0859 | sensory box histidine kinase/response regulator | SubName: Full=Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain; EC=2.7.13.3; | chromosome | CDS | 882701 | 5298 | + | 0.453756 | |
| SO0860 | response regulator | chromosome | CDS | 888057 | 1020 | + | 0.471569 | ||
| SO0864 | transcriptional regulator, LuxR family | chromosome | CDS | 892542 | 768 | + | 0.429688 | ||
| SO0925 | GGDEF domain protein | SubName: Full=Signalling protein with GGDEF domain; | chromosome | CDS | 954005 | 1008 | - | 0.450397 | |
| SO0928 | GGDEF domain protein | SubName: Full=Diguanylate cyclase; EC=2.7.7.65; | chromosome | CDS | 956612 | 954 | + | 0.445493 | |
| SO0936 | transcriptional regulator | SubName: Full=Transmembrane transcriptional regulator; | chromosome | CDS | 968070 | 747 | + | 0.43909 | |
| SO0943 | sensory box protein, putative | SubName: Full=Signalling protein with PAS and GGDEF domains; | chromosome | CDS | 973957 | 2238 | - | 0.463807 | |
| SO0981 | sensor histidine kinase | chromosome | CDS | 1010794 | 642 | - | 0.426791 | ||
| SO0984 | hypothetical protein | chromosome | CDS | 1012683 | 960 | + | 0.4375 | ||
| SO0987 | methyl-accepting chemotaxis protein | SubName: Full=Methyl accepting sensory transducer with Cache_2 small molecule binding domain; | chromosome | CDS | 1015101 | 1665 | + | 0.449249 | |
| SO1044 | amino acid ABC transporter, periplasmic amino acid-binding protein | SubName: Full=ABC-type arginine uptakesystem substrate-binding component ArtI; | chromosome | CDS | 1082233 | 735 | - | 0.444898 | |
| SO1055 | sensory box protein | SubName: Full=Diguanylate cyclase with PAS and GAF sensory domains; EC=2.7.7.65; | chromosome | CDS | 1093490 | 1389 | + | 0.438445 | |
| SO1056 | methyl-accepting chemotaxis protein | SubName: Full=Methyl accepting sensory transducer with Cache_1 small molecule binding domain; | chromosome | CDS | 1094947 | 1893 | - | 0.471738 | |
| SO1143 | conserved hypothetical protein | SubName: Full=Periplasmic substrate binding protein family 3; | chromosome | CDS | 1186243 | 768 | - | 0.466146 | |
| SO1144 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer; | chromosome | CDS | 1187307 | 1089 | - | 0.431589 | |
| SO1180 | PhoH family protein | chromosome | CDS | 1222546 | 1068 | - | 0.490637 | ||
| SO1208 | GGDEF domain protein | SubName: Full=Bifunctional diguanylate cyclase/phosphodiesterase; EC=2.7.7.65; | chromosome | CDS | 1252572 | 2055 | - | 0.445255 | |
| SO1254 | conserved hypothetical protein | chromosome | CDS | 1303494 | 753 | + | 0.468792 | ||
| SO1255 | cyclic nucleotide phosphodiesterase, putative | SubName: Full=Bifunctional diguanylate cyclase/phosphodiesterase; EC=2.7.7.65; | chromosome | CDS | 1304327 | 1530 | + | 0.454248 | |
| SO1260 | conserved hypothetical protein | SubName: Full=Extracellular solute-binding protein family 3; | chromosome | CDS | 1308754 | 822 | - | 0.420925 | |
| SO1278 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer; | chromosome | CDS | 1328993 | 2121 | + | 0.455446 | |
| SO1327 | sensor histidine kinase-related protein | SubName: Full=Histidine-containing phosphotransfer domain protein HptA; | chromosome | CDS | 1384496 | 366 | + | 0.442623 | |
| SO1329 | adenylate cyclase-related protein | chromosome | CDS | 1386019 | 1008 | - | 0.445437 | ||
| SO1385 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer with PAS sensory domain; | chromosome | CDS | 1441182 | 1563 | - | 0.478567 | |
| SO1387 | HD domain protein | chromosome | CDS | 1443222 | 1269 | + | 0.44602 | ||
| SO1392 | conserved hypothetical protein | SubName: Full=Membrane protein, HPP family; | chromosome | CDS | 1449692 | 480 | - | 0.491667 | |
| SO1416 | DNA-binding response regulator | SubName: Full=Two component signal transduction system response regulator LuxR family; | chromosome | CDS | 1473203 | 600 | - | 0.47 | |
| SO1417 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 1473777 | 1806 | - | 0.466777 | |
| SO1434 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer with 4HB_MCP sensory domain; | chromosome | CDS | 1495729 | 1632 | - | 0.405024 | |
| SO1461 | protein kinase, putative | SubName: Full=Serine/threonine protein kinase; | chromosome | CDS | 1519669 | 4131 | + | 0.455338 | |
| SO1480 | GGDEF family protein | SubName: Full=Diguanylate cyclase; EC=2.7.7.65; | chromosome | CDS | 1542160 | 1791 | + | 0.413177 | |
| SO1500 | sensory box protein | chromosome | CDS | 1570452 | 2997 | + | 0.464798 | ||
| SO1503 | ABC transporter, periplasmic substrate-binding protein, putative | SubName: Full=Periplasmic substrate binding protein family 3; | chromosome | CDS | 1576304 | 777 | - | 0.423423 | |
| SO1551 | GGDEF domain protein | SubName: Full=Diguanylate cyclase; EC=2.7.7.65; | chromosome | CDS | 1626097 | 1557 | - | 0.434811 | |
| SO1570 | GGDEF domain protein | SubName: Full=7TM intracellular signalling protein with GGDEF domain; EC=2.7.7.65; | chromosome | CDS | 1645940 | 1668 | + | 0.443046 | |
| SO1586 | conserved hypothetical protein | chromosome | CDS | 1662321 | 603 | + | 0.487562 | ||
| SO1646 | GGDEF family protein | SubName: Full=Diguanylate cyclase; EC=2.7.7.65; | chromosome | CDS | 1731310 | 891 | - | 0.466891 | |
| SO1695 | sensory box/GGDEF family protein | chromosome | CDS | 1783237 | 957 | - | 0.481714 | ||
| SO1774 | conserved hypothetical protein | SubName: Full=Transcriptional repressor of glycerate utilization SdaR; | chromosome | CDS | 1853738 | 1224 | - | 0.458333 | |
| SO1830 | GGDEF domain protein | SubName: Full=Diguanylate cyclase; | chromosome | CDS | 1922508 | 510 | - | 0.372549 | |
| SO1839 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1928896 | 828 | - | 0.410628 | |
| SO1860 | DNA-binding response regulator, LuxR family | SubName: Full=Two component signal transduction system response regulator UvrY; | chromosome | CDS | 1951805 | 645 | + | 0.471318 | |
| SO1942 | HDIG domain protein | SubName: Full=Cyclic di-GMP hydrolase; | chromosome | CDS | 2045492 | 1263 | - | 0.424386 | |
| SO1973 | conserved hypothetical protein | chromosome | CDS | 2077699 | 708 | + | 0.420904 | ||
| SO1985 | transcriptional activator, putative | SubName: Full=Anti-ECFsigma factor ChrR; | chromosome | CDS | 2088414 | 693 | - | 0.415584 | |
| SO2005 | dksA-type zinc finger protein | SubName: Full=DksA-type zinc finger protein; | chromosome | CDS | 2104257 | 360 | - | 0.5 | |
| SO2039 | conserved domain protein | SubName: Full=Signalling protein with EAL domain; | chromosome | CDS | 2135528 | 702 | - | 0.454416 | |
| SO2049 | GGDEF family protein | chromosome | CDS | 2149297 | 960 | + | 0.433333 | ||
| SO2083 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer; | chromosome | CDS | 2178871 | 1518 | - | 0.461133 | |
| SO2104 | DNA-binding response regulator YgiX, putative | SubName: Full=AI-3-responsive two component signal transduction system response regulator QseB; | chromosome | CDS | 2201569 | 660 | + | 0.459091 | |
| SO2105 | sensor protein YgiY, putative | chromosome | CDS | 2202308 | 1431 | + | 0.440252 | ||
| SO2117 | methyl-accepting chemotaxis protein | chromosome | CDS | 2221890 | 1134 | + | 0.415344 | ||
| SO2118 | SpoIIAA family protein | SubName: Full=Chemotaxis locus anti-sigma factor antagonist; | chromosome | CDS | 2223038 | 285 | + | 0.34386 | |
| SO2119 | response regulator | SubName: Full=Protein phosphatase with response regulator reciever modulation; EC=3.1.3.16; | chromosome | CDS | 2223331 | 1698 | + | 0.352179 | |
| SO2123 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer; | chromosome | CDS | 2228055 | 1965 | + | 0.450891 | |
| SO2127 | response regulator | SubName: Full=Diguanylate cyclase with response regulator receiver modulation; EC=2.7.7.65; | chromosome | CDS | 2232563 | 1635 | - | 0.421407 | |
| SO2145 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase; | chromosome | CDS | 2252137 | 936 | + | 0.417735 | |
| SO2174 | cyclic nucleotide phosphodiesterase, putative | SubName: Full=Diguanylate cyclase with PAS sensory domain; EC=2.7.7.65; | chromosome | CDS | 2285015 | 963 | - | 0.438214 | |
| SO2192 | sensor histidine kinase | chromosome | CDS | 2303438 | 2064 | - | 0.505329 | ||
| SO2193 | DNA-binding response regulator | SubName: Full=Two component signal transduction system controlling sortase system response regulator; | chromosome | CDS | 2305630 | 693 | - | 0.499278 | |
| SO2197 | GGDEF family protein | SubName: Full=Diguanylate cyclase; EC=2.7.7.65; | chromosome | CDS | 2310820 | 1026 | - | 0.454191 | |
| SO2208 | phosphotyrosine protein phosphatase | SubName: Full=Low molecular weight phosphotyrosine protein phosphatase PtpA; EC=3.1.3.48; | chromosome | CDS | 2320084 | 516 | + | 0.45155 | |
| SO2216 | sensory box protein | SubName: Full=Bifunctional diguanylate cyclase with GAF and PAS sensory domains/signalling protein with EAL domain; EC=2.7.7.65; | chromosome | CDS | 2329348 | 2259 | + | 0.442231 | |
| SO2240 | methyl-accepting chemotaxis protein | SubName: Full=Energy taxis modulating methyl accepting sensory transducer with Cache_2 sensory domain; | chromosome | CDS | 2355819 | 1638 | - | 0.454212 | |
| SO2319 | anti-anti-sigma factor, putative | SubName: Full=Chemotaxis locus antisigma factor antogonist; | chromosome | CDS | 2429018 | 321 | + | 0.429907 | |
| SO2323 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer; | chromosome | CDS | 2432836 | 1941 | + | 0.415765 | |
| SO2355 | universal stress protein family | SubName: Full=Universal stress protein UspE; | chromosome | CDS | 2462461 | 933 | - | 0.445874 | |
| SO2366 | response regulator | SubName: Full=Two component signal transduction system response regulator with DUF3369 and HD domains; | chromosome | CDS | 2472307 | 1578 | - | 0.413815 | |
| SO2426 | DNA-binding response regulator | chromosome | CDS | 2533900 | 714 | - | 0.436975 | ||
| SO2434 | extracellular solute-binding proteins, family 3/GGDEF domain protein | SubName: Full=Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase; EC=2.7.7.65; | chromosome | CDS | 2543523 | 2814 | - | 0.459844 | |
| SO2498 | sensory box protein | chromosome | CDS | 2623052 | 2328 | - | 0.457474 | ||
| SO2507 | GGDEF domain protein | SubName: Full=Bifunctional diguanylate cyclase/phosphodiesterase; | chromosome | CDS | 2633593 | 1905 | + | 0.432021 | |
| SO2520 | GGDEF domain protein | SubName: Full=Signalling protein with GGDEF domain; | chromosome | CDS | 2646164 | 975 | - | 0.436923 | |
| SO2538 | response regulator | SubName: Full=Two component signal transduction system response regulator; | chromosome | CDS | 2668304 | 1113 | - | 0.421384 | |
| SO2539 | response regulator | SubName: Full=Two component signal transduction system response regulator with cyclic diguanylate phosphodiesterase activity and PAS sensory domain; | chromosome | CDS | 2669426 | 1977 | - | 0.417299 | |
| SO2540 | response regulator | SubName: Full=Two component signal transduction system response regulator; | chromosome | CDS | 2671411 | 579 | - | 0.402418 | |
| SO2541 | response regulator | SubName: Full=Two component signal transduction system response regulator; | chromosome | CDS | 2672082 | 1326 | + | 0.435143 | |
| SO2543 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 2674599 | 1383 | + | 0.354302 | |
| SO2544 | sensor histidine kinase/response regulator | SubName: Full=Two component signal transduction system hybrid histidine kinase/response regulator with Hpt domain; EC=2.7.13.3; | chromosome | CDS | 2675965 | 3060 | + | 0.328431 | |
| SO2545 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase with PAS sensory domain; EC=2.7.13.3; | chromosome | CDS | 2679073 | 1290 | - | 0.36124 | |
| SO2546 | conserved hypothetical protein | SubName: Full=Chemotaxis signal transduction system inhibitor of MCP methylation CheC; | chromosome | CDS | 2680365 | 573 | - | 0.396161 | |
| SO2547 | response regulator | SubName: Full=Chemotaxis signal transduction system response regulator CheY; | chromosome | CDS | 2680934 | 366 | - | 0.434426 | |
| SO2550 | transcriptional regulator-related protein | SubName: Full=cAMP binding protein; | chromosome | CDS | 2682564 | 693 | + | 0.441558 | |
| SO2551 | transcriptional regulator-related protein | SubName: Full=Transcriptional regulator Crp/Fnr family; | chromosome | CDS | 2683382 | 768 | + | 0.445312 | |
| SO2595 | BNR repeat protein | SubName: Full=BNR repeat protein; | chromosome | CDS | 2728329 | 1011 | - | 0.463897 | |
| SO2602 | conserved hypothetical protein | RecName: Full=Protein ProQ homolog; | chromosome | CDS | 2738348 | 642 | - | 0.456386 | |
| SO2603 | conserved hypothetical protein | SubName: Full=Free methionine-R-sulfoxide reductase YebR; EC=1.8.4.14; | chromosome | CDS | 2739267 | 459 | - | 0.453159 | |
| SO2648 | DNA-binding response regulator, LuxR family | SubName: Full=Two component signal transduction system response regulator activating acetyl-CoA synthase LuxR family; | chromosome | CDS | 2785216 | 663 | + | 0.463047 | |
| SO2674 | C4-type zinc finger protein, DksA/TraR family | SubName: Full=Mu phage Mom translational regulator Com; | chromosome | CDS | 2800361 | 216 | + | 0.462963 | |
| SO2677 | conserved hypothetical protein | SubName: Full=Mu phage small terminase subunit GpD; | chromosome | CDS | 2801187 | 582 | + | 0.512028 | |
| SO2717 | cyclic nucleotide binding protein, putative | SubName: Full=Nucleoside-responsive transcriptional activator of nucleoside utilization DeoR; | chromosome | CDS | 2835165 | 681 | + | 0.431718 | |
| SO2758 | GGDEF family protein | SubName: Full=Signalling protein with GGDEF domain; | chromosome | CDS | 2880233 | 1404 | - | 0.404558 | |
| SO2822 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase with GAF sensory domain YehU; EC=2.7.13.3; | chromosome | CDS | 2942458 | 1683 | + | 0.452763 | |
| SO2823 | response regulator | RecName: Full=Uncharacterized response regulatory protein SO_2823; | chromosome | CDS | 2944137 | 711 | + | 0.445851 | |
| SO2856 | CBS domain protein | SubName: Full=Putative nucleotidyltransferase DUF294; | chromosome | CDS | 2979531 | 1863 | - | 0.450349 | |
| SO2862 | HDIG domain protein | SubName: Full=Cyclic di-GMP hydrolase; | chromosome | CDS | 2986124 | 1206 | - | 0.44942 | |
| SO2882 | conserved hypothetical protein | SubName: Full=Serine protein kinase PrkA; EC=2.7.11.1; | chromosome | CDS | 3002305 | 1935 | + | 0.442377 | |
| SO2889 | sensory box histidine kinase | SubName: Full=Two component signal transduction system histidine kinase with Cache_1 and PAS sensory domains; EC=2.7.13.3; | chromosome | CDS | 3011321 | 2610 | + | 0.422605 | |
| SO2942 | hypothetical protein | SubName: Full=Lambda phage transcriptional regulator; | chromosome | CDS | 3081179 | 567 | - | 0.329806 | |
| SO3052 | methyl-accepting chemotaxis protein | SubName: Full=Methyl-accepting chemotaxis protein; | chromosome | CDS | 3164464 | 1740 | - | 0.458046 | |
| SO3059 | formate hydrogenlyase transcriptional activator, putative | SubName: Full=Sigma54 specific transcriptional regulator Fis family; | chromosome | CDS | 3172709 | 1527 | + | 0.465619 | |
| SO3084 | sensory box protein | SubName: Full=Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain; EC=2.7.7.65; | chromosome | CDS | 3205035 | 4269 | + | 0.350902 | |
| SO3124 | tyrosine-specific protein phosphatase, putative | SubName: Full=Dual specificity protein-tyrosine phosphatase; EC=3.1.3.16; EC=3.1.3.48; | chromosome | CDS | 3251864 | 471 | - | 0.492569 | |
| SO3162 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase with GAF sensory domain; EC=2.7.13.3; | chromosome | CDS | 3298460 | 1362 | - | 0.422908 | |
| SO3196 | response regulator | SubName: Full=Two component signal transduction system response regulator; | chromosome | CDS | 3337530 | 1104 | - | 0.4375 | |
| SO3203 | CheW domain protein | SubName: Full=Chemotaxis signal transduction system adaptor protein CheW; | chromosome | CDS | 3343186 | 981 | - | 0.439348 | |
| SO3207 | chemotaxis protein | SubName: Full=Chemotaxis signal transduction system histidine kinase CheA; EC=2.7.13.3; | chromosome | CDS | 3346681 | 2277 | - | 0.471673 | |
| SO3282 | methyl-accepting chemotaxis protein | SubName: Full=Energy taxis modulating methyl accepting sensory transducer; | chromosome | CDS | 3422537 | 2004 | + | 0.458583 | |
| SO3305 | DNA-binding response regulator, LuxR family | SubName: Full=Two component signal transduction system response regulator LuxR family; | chromosome | CDS | 3454571 | 621 | - | 0.37037 | |
| SO3306 | sensor histidine kinase | SubName: Full=Two component signal transduction system hybrid histidine kinase; EC=2.7.13.3; | chromosome | CDS | 3455194 | 3516 | - | 0.393345 | |
| SO3334 | GGDEF family protein | SubName: Full=Diguanylate cyclase with HAMP domain; EC=2.7.7.65; | chromosome | CDS | 3480763 | 1725 | + | 0.41913 | |
| SO3337 | conserved domain protein | chromosome | CDS | 3484043 | 1401 | - | 0.438258 | ||
| SO3389 | sensory box protein | SubName: Full=Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain; | chromosome | CDS | 3527778 | 2640 | - | 0.44697 | |
| SO3404 | methyl-accepting chemotaxis protein | SubName: Full=Methyl accepting sensory transducer with PAS sensory domain; | chromosome | CDS | 3542358 | 1569 | - | 0.477374 | |
| SO3412 | extracellular solute-binding proteins, family 3 protein | chromosome | CDS | 3551415 | 891 | - | 0.436588 | ||
| SO3457 | sensor histidine kinase/response regulator | chromosome | CDS | 3601960 | 2790 | + | 0.4681 | ||
| SO3480 | conserved hypothetical protein | SubName: Full=Cold-active protein-tyrosine phosphatase; | chromosome | CDS | 3627600 | 1155 | + | 0.450216 | |
| SO3481 | conserved hypothetical protein | SubName: Full=Periplasmic substrate binding protein family 3; | chromosome | CDS | 3628930 | 795 | + | 0.450314 | |
| SO3489 | GGDEF domain protein | SubName: Full=Diguanylate cyclase; | chromosome | CDS | 3636795 | 939 | - | 0.428115 | |
| SO3491 | HDIG domain protein | SubName: Full=Cyclic di-GMP hydrolase; | chromosome | CDS | 3638556 | 1269 | - | 0.43026 | |
| SO3510 | methyl-accepting chemotaxis protein, putative | chromosome | CDS | 3662623 | 975 | - | 0.459487 | ||
| SO3556 | cyclic nucleotide phosphodiesterase, putative | SubName: Full=Diguanylate cyclase with GAF sensory domain; | chromosome | CDS | 3714177 | 1263 | + | 0.437055 | |
| SO3582 | methyl-accepting chemotaxis protein | SubName: Full=Methyl-accepting chemotaxis sensory transducer with 4HB sensory domain; | chromosome | CDS | 3748521 | 1626 | + | 0.434809 | |
| SO3594 | transcriptional regulatory protein RstA, putative | SubName: Full=Two component signal transduction system controlling curli production response regulator RstA; | chromosome | CDS | 3756694 | 714 | + | 0.459384 | |
| SO3595 | sensor protein RstB, putative | chromosome | CDS | 3757362 | 1323 | + | 0.470144 | ||
| SO3608 | serine/threonine protein kinase | chromosome | CDS | 3768974 | 1116 | - | 0.370072 | ||
| SO3642 | methyl-accepting chemotaxis protein | SubName: Full=Energy taxis modulating methyl accepting sensory transducer; | chromosome | CDS | 3800833 | 2022 | + | 0.457468 | |
| SO3660 | sigma-54 dependent transcriptional regulator/sensory box protein | SubName: Full=Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family; | chromosome | CDS | 3812853 | 1467 | + | 0.475801 | |
| SO3680 | universal stress protein family | chromosome | CDS | 3831692 | 441 | - | 0.473923 | ||
| SO3681 | universal stress protein family | SubName: Full=Universal stress protein family; | chromosome | CDS | 3832302 | 432 | - | 0.465278 | |
| SO3688 | nitrogen regulation protein NtrY, putative | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 3837368 | 1668 | - | 0.448441 | |
| SO3689 | sigma-54 dependent nitrogen response regulator | SubName: Full=Two component signal transduction system Sigma54-dependent response regulator Fis family; | chromosome | CDS | 3839093 | 1428 | - | 0.481092 | |
| SO3700 | extracellular solute-binding protein, family 3/GGDEF domain protein | SubName: Full=Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase; | chromosome | CDS | 3850422 | 1386 | + | 0.428571 | |
| SO3759 | GGDEF domain protein | SubName: Full=Diguanylate cyclase with GAF sensory domain; EC=2.7.7.65; | chromosome | CDS | 3906314 | 975 | - | 0.433846 | |
| SO3765 | conserved hypothetical protein | SubName: Full=PspA/IM30 family protein; | chromosome | CDS | 3914606 | 690 | + | 0.455072 | |
| SO3772 | conserved hypothetical protein | chromosome | CDS | 3921478 | 549 | + | 0.466302 | ||
| SO3782 | hypothetical protein | chromosome | CDS | 3934007 | 945 | - | 0.491005 | ||
| SO3821 | rtn protein | SubName: Full=Diguanylate phosphodiesterase; | chromosome | CDS | 3971030 | 1548 | - | 0.420543 | |
| SO3838 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer; | chromosome | CDS | 3987645 | 1863 | - | 0.428878 | |
| SO3859 | cyclic nucleotide phosphodiesterase, putative | SubName: Full=Diguanylate cyclase; EC=2.7.7.65; | chromosome | CDS | 4004991 | 1896 | + | 0.420359 | |
| SO3860 | conserved hypothetical protein | SubName: Full=Periplasmic substrate binding protein family 3; | chromosome | CDS | 4006888 | 798 | - | 0.468672 | |
| SO3890 | methyl-accepting chemotaxis protein | SubName: Full=Energy taxis-modulating methyl accepting sensory transducer with hemerythrin sensory domain; | chromosome | CDS | 4035586 | 1590 | - | 0.446541 | |
| SO3894 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 4038523 | 1632 | + | 0.416054 | |
| SO3909 | conserved hypothetical protein | SubName: Full=Predicted membrane protein; | chromosome | CDS | 4056057 | 201 | - | 0.452736 | |
| SO3973 | RIO1/ZK632.3/MJ0444 family, putative | SubName: Full=Ser/Thr protein kinase; EC=2.7.11.1; | chromosome | CDS | 4110385 | 858 | - | 0.475524 | |
| SO3976 | GAF domain protein | chromosome | CDS | 4113629 | 780 | + | 0.435897 | ||
| SO3978 | conserved hypothetical protein | chromosome | CDS | 4114642 | 921 | + | 0.453855 | ||
| SO3979 | conserved domain protein | chromosome | CDS | 4115895 | 144 | + | 0.5 | ||
| SO3982 | DNA-binding nitrate/nitrite response regulator | SubName: Full=Nitrate/nitrite-responsive two component signal transduction system response regulator NarP; | chromosome | CDS | 4119636 | 630 | + | 0.450794 | |
| SO3999 | sensor histidine kinase | chromosome | CDS | 4135773 | 933 | - | 0.449089 | ||
| SO4001 | chemotaxis protein CheY/response regulator receiver domain protein | chromosome | CDS | 4137990 | 690 | - | 0.468116 | ||
| SO4002 | sensory transduction histidine kinase | chromosome | CDS | 4138683 | 5070 | - | 0.462525 | ||
| SO4003 | response regulator | SubName: Full=Metal dependent phosphohydrolase with response regulator receiver modulation; | chromosome | CDS | 4143980 | 1074 | + | 0.46648 | |
| SO4010 | hypothetical protein | chromosome | CDS | 4153665 | 144 | + | 0.423611 | ||
| SO4016 | conserved hypothetical protein | SubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; | chromosome | CDS | 4161663 | 1344 | - | 0.474702 | |
| SO4053 | methyl-accepting chemotaxis protein | SubName: Full=Methyl-accepting chemotaxis protein; | chromosome | CDS | 4205753 | 1905 | + | 0.499213 | |
| SO4075 | hypothetical protein | chromosome | CDS | 4228730 | 738 | + | 0.457995 | ||
| SO4145 | conserved hypothetical protein | SubName: Full=Signalling protein with EAL and C2 domains; | chromosome | CDS | 4302768 | 1503 | - | 0.434464 | |
| SO4155 | sensor histidine kinase | SubName: Full=Thiosulfate/tetrathionate-responsive two component signal transduction system histidine kinase TtrS; EC=2.7.13.3; | chromosome | CDS | 4330014 | 1806 | - | 0.478405 | |
| SO4157 | DNA-binding response regulator | SubName: Full=Thiosulfate/tetrathionate-responsive two component signal transduction system response regulator TtrR; | chromosome | CDS | 4332021 | 609 | + | 0.45977 | |
| SO4172 | DNA-binding response regulator | SubName: Full=Oxygen-responsive two component signal transduction system controlling redox affected systems response regulator PrrA; | chromosome | CDS | 4344666 | 552 | - | 0.519928 | |
| SO4173 | sensor histidine kinase | chromosome | CDS | 4345214 | 1287 | - | 0.496504 | ||
| SO4180 | hypothetical protein | SubName: Full=Diguanylate cyclase-like protein MxdA; EC=2.7.7.65; | chromosome | CDS | 4352368 | 1389 | - | 0.406767 | |
| SO4207 | GGDEF domain protein | SubName: Full=7TM intracellular signalling protein with GGDEF domain; EC=2.7.7.65; | chromosome | CDS | 4372704 | 1878 | + | 0.43344 | |
| SO4240 | hypothetical protein | chromosome | CDS | 4417647 | 1161 | + | 0.453919 | ||
| SO4298 | cyclic nucleotide binding protein, putative | SubName: Full=Transcriptional activator of nicotinamideribose utilization PnuR; | chromosome | CDS | 4476754 | 675 | + | 0.506667 | |
| SO4323 | GGDEF domain protein | SubName: Full=Bifunctional diguanylate cyclase/phosphodiesterase LasD-like protein; | chromosome | CDS | 4509898 | 1920 | + | 0.43125 | |
| SO4324 | GGDEF domain protein | SubName: Full=Bifunctional diguanylate cyclase/phosphodiesterase with GAF sensory domain; EC=2.7.7.65; | chromosome | CDS | 4512635 | 2631 | + | 0.444698 | |
| SO4355 | hypothetical protein | SubName: Full=cAMP-binding regulator; | chromosome | CDS | 4547271 | 714 | + | 0.316527 | |
| SO4387 | sensor histidine kinase | chromosome | CDS | 4583032 | 1503 | + | 0.401863 | ||
| SO4388 | DNA-binding response regulator | SubName: Full=Two component signal transduction system response regulator; | chromosome | CDS | 4584567 | 684 | + | 0.413743 | |
| SO4407 | GGDEF family protein | SubName: Full=Diguanylate cyclase; EC=2.7.7.65; | chromosome | CDS | 4599742 | 1035 | + | 0.442512 | |
| SO4425 | GGDEF family protein | chromosome | CDS | 4615800 | 1308 | + | 0.454893 | ||
| SO4427 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 4617831 | 1257 | - | 0.478918 | |
| SO4428 | DNA-binding response regulator | SubName: Full=Two component signal transduction system response regulator OmpR family; | chromosome | CDS | 4619137 | 678 | - | 0.467552 | |
| SO4431 | conserved domain protein | chromosome | CDS | 4621083 | 216 | - | 0.458333 | ||
| SO4433 | conserved domain protein | chromosome | CDS | 4622568 | 603 | - | 0.38806 | ||
| SO4444 | capsular synthesis regulator component B, putative | SubName: Full=Two component signal transduction system response regulator of capsule flagella and curli biosynthesis RcsB; | chromosome | CDS | 4632035 | 639 | - | 0.363067 | |
| SO4445 | response regulator/sensor histidine kinase | SubName: Full=Two component signal transduction system hybrid histidine kinase/response regulator; EC=2.7.13.3; | chromosome | CDS | 4632770 | 3426 | + | 0.421775 | |
| SO4454 | methyl-accepting chemotaxis protein | chromosome | CDS | 4643423 | 1929 | + | 0.485744 | ||
| SO4457 | GGDEF domain protein | SubName: Full=Diguanylate cyclase; EC=2.7.7.65; | chromosome | CDS | 4646588 | 1458 | - | 0.423868 | |
| SO4466 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer; | chromosome | CDS | 4654062 | 1956 | - | 0.473415 | |
| SO4476 | spheroplast protein y precursor, putative | SubName: Full=Periplasmic stress adaptor protein CpxP; | chromosome | CDS | 4664291 | 492 | - | 0.473577 | |
| SO4487 | DNA-binding response regulator | SubName: Full=Two component signal transduction system response regulator with winged helix family DNA binding domain; | chromosome | CDS | 4674187 | 663 | + | 0.506787 | |
| SO4488 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 4674852 | 1317 | + | 0.490509 | |
| SO4528 | hypothetical protein | chromosome | CDS | 4723037 | 813 | - | 0.464945 | ||
| SO4552 | sensory box protein | SubName: Full=Bifunctional diguanylate cyclase with PAS sensory domain/signalling protein with EAL domain; EC=2.7.7.65; | chromosome | CDS | 4747944 | 2118 | + | 0.460812 | |
| SO4557 | methyl-accepting chemotaxis protein | SubName: Full=Methyl-accepting chemotaxis protein with Cache sensory domain; | chromosome | CDS | 4753426 | 1872 | - | 0.501603 | |
| SO4563 | conserved hypothetical protein | SubName: Full=HDOD domain protein; | chromosome | CDS | 4759697 | 825 | - | 0.48 | |
| SO4577 | conserved domain protein | chromosome | CDS | 4772183 | 306 | - | 0.405229 | ||
| SO4622 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 4817820 | 1242 | - | 0.419485 | |
| SO4623 | DNA-binding response regulator | SubName: Full=Two component signal transduction system response regulator; | chromosome | CDS | 4819048 | 678 | - | 0.477876 | |
| SO4624 | transcriptional regulator, LuxR family | SubName: Full=Transcriptional regulator LuxR family; | chromosome | CDS | 4819728 | 747 | - | 0.419009 | |
| SO4635 | methyl-accepting chemotaxis protein | SubName: Full=Chemotaxis signal transduction system methyl accepting sensory transducer; | chromosome | CDS | 4830958 | 1977 | + | 0.498735 | |
| SO4637 | DNA-binding response regulator | SubName: Full=Two component transcriptional regulator Winged helix family; | chromosome | CDS | 4834383 | 669 | + | 0.45441 | |
| SO4638 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 4835023 | 1293 | + | 0.46249 | |
| SO4647 | DNA-binding response regulator | SubName: Full=Two component signal transduction system response regulator OmpR family; | chromosome | CDS | 4842876 | 696 | + | 0.472701 | |
| SO4648 | sensor histidine kinase | SubName: Full=Two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 4843564 | 1365 | + | 0.491575 | |
| SO4677 | conserved hypothetical protein | RecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; | chromosome | CDS | 4875707 | 753 | - | 0.50332 | |
| SO4711 | HD domain protein | SubName: Full=Cyclic di-GMP hydrolase; | chromosome | CDS | 4913083 | 1185 | - | 0.428692 | |
| SO4714 | conserved hypothetical protein | SubName: Full=ABC-type amino acid uptake system substrate-binding component PAAT family; | chromosome | CDS | 4917940 | 726 | - | 0.421488 | |
| SO4717 | sensor histidine kinase | SubName: Full=Tungstate-responsive two component signal transduction system histidine kinase; EC=2.7.13.3; | chromosome | CDS | 4920395 | 2130 | - | 0.474178 | |
| SO4718 | sigma-54 dependent response regulator | SubName: Full=Tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family; | chromosome | CDS | 4922525 | 1383 | - | 0.490962 | |
| SO4734 | sensory box protein | chromosome | CDS | 4939626 | 2295 | - | 0.442702 | ||
| SOA0041 | transcriptional regulator, PemK family | RecName: Full=mRNA interferase; EC=3.1.-.-; | megaplasmid | CDS | 31077 | 318 | + | 0.380503 | |
| SOA0071 | conserved hypothetical protein | megaplasmid | CDS | 57546 | 423 | - | 0.416076 | ||
| SOA0106 | methyl-accepting chemotaxis protein | SubName: Full=Methyl-accepting chemotaxis protein; | megaplasmid | CDS | 85324 | 1641 | + | 0.427179 | |
| SOA0109 | hypothetical protein | SubName: Full=EAL domain protein; | megaplasmid | CDS | 89170 | 732 | + | 0.275956 | |
| apaH | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) | RecName: Full=Bis(5-nucleosyl)-tetraphosphatase, symmetrical; EC=3.6.1.41; AltName: Full=Ap4A hydrolase; AltName: Full=Diadenosine 5,5-P1,P4-tetraphosphate pyrophosphohydrolase; AltName: Full=Diadenosine tetraphosphatase; | chromosome | CDS | 3799911 | 825 | + | 0.476364 | |
| arcA | aerobic respiration control protein ArcA | SubName: Full=Two component signal transduction system controlling aerobic respiration response regulator ArcA; | chromosome | CDS | 4126001 | 717 | + | 0.461646 | |
| bipA | virulence regulator BipA | SubName: Full=GTP-binding protein BipA; EC=3.6.5.-; | chromosome | CDS | 4600865 | 1812 | - | 0.480132 | |
| bolA | bolA protein | chromosome | CDS | 1141356 | 294 | + | 0.459184 | ||
| cheA | chemotaxis protein CheA | SubName: Full=Chemotaxis signal transduction system histidine kinase CheA; EC=2.7.13.3; | chromosome | CDS | 2225414 | 2109 | + | 0.432907 | |
| cheB-1 | protein-glutamate methylesterase CheB | RecName: Full=Chemotaxis response regulator protein-glutamate methylesterase of group 2 operon; EC=3.1.1.61; | chromosome | CDS | 2231476 | 1056 | + | 0.467803 | |
| cheB-2 | protein-glutamate methylesterase CheB | RecName: Full=Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon; EC=3.1.1.61; | chromosome | CDS | 2436780 | 1071 | + | 0.482726 | |
| cheB-3 | protein-glutamate methylesterase CheB | RecName: Full=Chemotaxis response regulator protein-glutamate methylesterase of group 1 operon; EC=3.1.1.61; | chromosome | CDS | 3345536 | 1125 | - | 0.468444 | |
| cheD-1 | chemotaxis protein CheD | chromosome | CDS | 2230846 | 627 | + | 0.408293 | ||
| cheD-2 | chemotaxis protein CheD, putative | chromosome | CDS | 2436161 | 600 | + | 0.403333 | ||
| cheR-1 | chemotaxis protein methyltransferase CheR | RecName: Full=Chemotaxis protein methyltransferase; EC=2.1.1.80; | chromosome | CDS | 2230038 | 834 | + | 0.42446 | |
| cheR-2 | chemotaxis protein methyltransferase CheR | chromosome | CDS | 3388836 | 840 | - | 0.430952 | ||
| cheR-3 | chemotaxis protein methyltransferase CheR | RecName: Full=Chemotaxis protein methyltransferase; EC=2.1.1.80; | chromosome | CDS | 2435323 | 828 | + | 0.385266 | |
| cheV-1 | chemotaxis protein CheV | SubName: Full=Chemotaxis signal transduction system response regulator CheV; EC=2.7.3.-; | chromosome | CDS | 2091375 | 945 | + | 0.446561 | |
| cheV-2 | chemotaxis protein CheV | SubName: Full=Chemotaxis signal transduction system response regulator CheV; EC=2.7.3.-; | chromosome | CDS | 3250827 | 900 | - | 0.48 | |
| cheV-3 | chemotaxis protein CheV | SubName: Full=Chemotaxis signal transduction system response regulator CheV; EC=2.7.3.-; | chromosome | CDS | 3389778 | 921 | - | 0.422367 | |
| cheW-1 | purine-binding chemotaxis protein CheW | SubName: Full=Chemotaxis signal transduction system adaptor protein CheW; | chromosome | CDS | 2227537 | 513 | + | 0.442495 | |
| cheW-2 | purine-binding chemotaxis protein CheW | SubName: Full=Chemotaxis signal transduction system adaptor protein CheW; | chromosome | CDS | 2434790 | 537 | + | 0.417132 | |
| cheW-3 | purine-binding chemotaxis protein CheW | SubName: Full=Chemotaxis signal transduction system adaptor protein CheW; | chromosome | CDS | 3342684 | 495 | - | 0.428283 | |
| cheY-1 | chemotaxis protein CheY | SubName: Full=Chemotaxis signal transduction system response regulator CheY; | chromosome | CDS | 2225032 | 366 | + | 0.431694 | |
| cheY-2 | chemotaxis protein CheY | SubName: Full=Chemotaxis signal transduction system response regulator CheY; | chromosome | CDS | 2428640 | 366 | + | 0.439891 | |
| cheY-3 | chemotaxis protein CheY | SubName: Full=Chemotaxis signal transduction system response regulator CheY; | chromosome | CDS | 3349724 | 384 | - | 0.427083 | |
| cheZ | chemotaxis protein CheZ | RecName: Full=Protein phosphatase CheZ; EC=3.1.3.-; AltName: Full=Chemotaxis protein CheZ; | chromosome | CDS | 3348973 | 738 | - | 0.429539 | |
| cpxA | sensor protein CpxA | SubName: Full=Periplasmic stress-responsive two component signal transduction system histidine kinase CpxA; EC=2.7.13.3; | chromosome | CDS | 4665827 | 1350 | + | 0.488889 | |
| cpxR | transcriptional regulatory protein CpxR | SubName: Full=Periplasmic stress-responsive two component signal transduction system response regulator CpxR; | chromosome | CDS | 4665126 | 687 | + | 0.458515 | |
| crp | catabolite gene activator | SubName: Full=cAMP-responsive regulator of catabolite repression Crp; | chromosome | CDS | 650745 | 636 | - | 0.430818 | |
| csrA | carbon storage regulator | RecName: Full=Carbon storage regulator homolog; | chromosome | CDS | 3568169 | 198 | - | 0.439394 | |
| dctD | C4-dicarboxylate transport transcriptional regulatory protein | SubName: Full=C4-dicarboxylate-responsive two component Sigma54-dependent signal transduction system response regulator DctD; | chromosome | CDS | 3268059 | 1380 | + | 0.47971 | |
| dksA | DnaK suppressor protein | RecName: Full=RNA polymerase-binding transcription factor DksA; | chromosome | CDS | 904132 | 444 | - | 0.481982 | |
| envZ | osmolarity sensor protein EnvZ | SubName: Full=Osmolarity-responsive two component signal transduction system histidine kinase EnvZ; EC=2.7.13.3; | chromosome | CDS | 4829525 | 1317 | + | 0.507213 | |
| etrA | electron transport regulator a | chromosome | CDS | 2463520 | 765 | - | 0.427451 | ||
| flgN | flagellar biosynthetic protein FlgN | SubName: Full=Secretion chaperone for FlgK and FlgL FlgN; | chromosome | CDS | 3392017 | 426 | + | 0.415493 | |
| flrA | flagellar regulatory protein A | SubName: Full=Sigma54-dependent transcriptional regulator for flagellar biosynthesis FlrA; | chromosome | CDS | 3371358 | 1434 | - | 0.472106 | |
| flrB | flagellar regulatory protein B | SubName: Full=Two component signal transduction system controlling flagellar biosynthesis histidine kinase with PAS sensory domain FlrB; EC=2.7.13.3; | chromosome | CDS | 3370167 | 1083 | - | 0.466297 | |
| flrC | flagellar regulatory protein C | SubName: Full=Two component signal transduction system controlling flagella biosynthesis Sigma54-dependent response regulator FlrC; | chromosome | CDS | 3368834 | 1341 | - | 0.477256 | |
| glnE | glutamate-ammonia-ligase adenylyltransferase | chromosome | CDS | 3907349 | 2973 | - | 0.490414 | ||
| kdpE | transcriptional regulatory protein KdpE | SubName: Full=Two component signal transduction system controlling the osmosenstive K+ channel response regulator KdpE; | chromosome | CDS | 66406 | 690 | - | 0.498551 | |
| lexA | LexA repressor | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 4799182 | 621 | + | 0.479871 | |
| luxS | autoinducer-2 production protein LuxS | RecName: Full=S-ribosylhomocysteine lyase; EC=4.4.1.21; AltName: Full=AI-2 synthesis protein; AltName: Full=Autoinducer-2 production protein LuxS; | chromosome | CDS | 1143141 | 510 | + | 0.452941 | |
| mshH | MSHA biogenesis protein MshH | chromosome | CDS | 4275178 | 1896 | - | 0.457278 | ||
| narQ | nitrate/nitrite sensor protein NarQ | chromosome | CDS | 4117886 | 1758 | + | 0.450512 | ||
| ntrB | nitrogen regulation protein | SubName: Full=Nitrogen-responsive two component signal transduction system histidine kinase with PAS sensory domain GlnL; EC=2.7.13.3; | chromosome | CDS | 4659592 | 1047 | + | 0.501433 | |
| ntrC | nitrogen regulation protein NR(I) | SubName: Full=Nitrogen-responsive two component signal transduction system Sigma54-dependent response regulator GlnG; | chromosome | CDS | 4660676 | 1416 | + | 0.507062 | |
| ompR | transcriptional regulatory protein OmpR | SubName: Full=Osmolarity-responsive two component signal transduction system response regulator OmpR; | chromosome | CDS | 4828759 | 726 | + | 0.545455 | |
| phoB | phosphate regulon response regulator PhoB | chromosome | CDS | 1634454 | 720 | + | 0.491667 | ||
| phoP | transcriptional regulatory protein PhoP | SubName: Full=Two component signal transduction system response regulator PhoP; | chromosome | CDS | 2049116 | 675 | - | 0.445926 | |
| phoQ | sensor protein PhoQ | SubName: Full=Two component signal transduction system histidine kinase PhoQ; EC=2.7.13.3; | chromosome | CDS | 2047776 | 1350 | - | 0.457037 | |
| phoR | phosphate regulon sensor protein PhoR | SubName: Full=Phosphate-responsive two component signal transduction system histidine kinase with PAS and DUF3329 domains PhoR; EC=2.7.13.3; | chromosome | CDS | 1635254 | 1299 | + | 0.468822 | |
| pspA | phage shock protein A | SubName: Full=PspF antagonist PspA; | chromosome | CDS | 1897828 | 684 | + | 0.444444 | |
| pspC | phage shock protein C | SubName: Full=Phage shock protein C PspC; | chromosome | CDS | 1898755 | 387 | + | 0.439276 | |
| pspF | psp operon transcriptional activator | SubName: Full=Sigma 54-dependent transcriptional activator of phage shock response PspF; | chromosome | CDS | 1896559 | 1092 | - | 0.466117 | |
| ptsN | nitrogen regulatory IIA protein | SubName: Full=Phosphotransferase system (PTS) sugar-specific IIA component PtsN; EC=2.7.1.-; | chromosome | CDS | 4103897 | 444 | + | 0.472973 | |
| ptsP | phosphoenolpyruvate-protein phosphotransferase PtsP | SubName: Full=Phosphotransferase system (PTS) enzyme I PtsP; EC=2.7.3.9; | chromosome | CDS | 1389120 | 2235 | + | 0.480984 | |
| relA | GTP pyrophosphokinase | SubName: Full=GTP pyrophosphokinase RelA; EC=2.7.6.5; | chromosome | CDS | 3598092 | 2208 | - | 0.503623 | |
| rseA | sigma-E factor negative regulatory protein | RecName: Full=Anti-sigma-E factor RseA; AltName: Full=Regulator of SigE; AltName: Full=Sigma-E anti-sigma factor RseA; AltName: Full=Sigma-E factor negative regulatory protein; | chromosome | CDS | 1399817 | 624 | + | 0.475962 | |
| rseB | sigma-E factor regulatory protein RseB | SubName: Full=Sigma E factor regulatory protein RseB; | chromosome | CDS | 1400453 | 933 | + | 0.457663 | |
| rseC | sigma-E factor regulatory protein RseC | SubName: Full=Sigma E factor positive regulatory protein RseC; | chromosome | CDS | 1401397 | 474 | + | 0.455696 | |
| sixA | phosphohistidine phosphatase SixA | SubName: Full=Phosphohistidine phosphatase SixA; EC=3.1.3.-; | chromosome | CDS | 3201321 | 471 | - | 0.467091 | |
| spoT | guanosine-3',5'-bis(diphosphate)3'-pyrophosphohy drolase | SubName: Full=Bifunctional ppGpp phosphohydrolase/GTP diphosphokinase SpoT; EC=2.7.6.5; EC=3.1.7.2; | chromosome | CDS | 368255 | 2106 | - | 0.51567 | |
| torR | torcad operon transcriptional regulatory protein TorR | SubName: Full=TMAO-responsive two component signal transduction system response regulator TorR; | chromosome | CDS | 1276228 | 711 | + | 0.448664 | |
| torS | sensor histidine kinase/response regulator TorS | SubName: Full=TMAO-responsive two component signal transduction system hybrid histidine kinase/response regulator TorS; EC=2.7.13.3; | chromosome | CDS | 1278074 | 3078 | + | 0.492853 | |
| umuD | umuD protein | SubName: Full=DNA polymerase V subunit UmuD; EC=3.4.21.-; | megaplasmid | CDS | 11335 | 405 | - | 0.471605 | |
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