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2024-05-05 13:11:57

Gene list

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COG category: Signal transduction mechanisms
Organism: Shigella boydii Sb227, Sb227

Number of genes found: 158

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SBO_4093 conserved hypothetical proteinchromosome CDS4135185 741 + 0.426451
NA SBO_1226 conserved hypothetical proteinchromosome CDS1222114 837 + 0.512545
NA SBO_1568 putative enzymechromosome CDS1561151 2424 + 0.502888
NA SBO_2406 putative sensor proteinchromosome CDS2400601 1698 + 0.510601
NA SBO_0726 conserved hypothetical proteinchromosome CDS744655 1329 + 0.434913
NA SBO_1640 conserved hypothetical proteinchromosome CDS1625903 948 - 0.506329
NA SBO_2642 conserved hypothetical proteinchromosome CDS2646223 891 + 0.491582
NA SBO_2407 putative 2-component transcriptional regulatorchromosome CDS2402313 735 + 0.47483
NA SBO_0956 putative tail fiber assembly proteinchromosome CDS988095 546 - 0.492674
NA SBO_0725 conserved hypothetical proteinchromosome CDS744222 426 + 0.431925
NA SBO_1421 conserved hypothetical proteinchromosome CDS1396270 714 + 0.42437
NA SBO_1609 conserved hypothetical proteinchromosome CDS1598070 264 + 0.458333
NA SBO_4428 putative inner membrane proteinchromosome CDS4483172 348 + 0.445402
NA SBO_2740 conserved hypothetical proteinchromosome CDS2752179 312 + 0.464744
NA SBO_1567 conserved hypothetical proteinchromosome CDS1560524 627 + 0.451356
NA SBO_2378 conserved hypothetical proteinchromosome CDS2366652 486 - 0.530864
NA SBO_1247 conserved hypothetical proteinchromosome CDS1242287 552 - 0.481884
NA SBO_1720 conserved hypothetical proteinchromosome CDS1701738 1293 + 0.474091
NA SBO_2409 putative PTS system enzyme IIA component, enzyme Ichromosome CDS2403920 2496 - 0.548077
NA SBO_0255 putative phage repressorchromosome CDS270767 675 + 0.447407
aceK SBO_4036 isocitrate dehydrogenase kinase/phosphatasechromosome CDS4076688 1725 + 0.529855
aer SBO_2931 aerotaxis sensor receptor, flavoproteinchromosome CDS2934186 1521 - 0.549638
apaH SBO_0038 diadenosine tetraphosphatasechromosome CDS39442 843 - 0.556346
arcA SBO_4464 negative response regulator of genes in aerobic pathwayschromosome CDS4517761 717 - 0.509066
arcB SBO_3172 aerobic respiration sensor-response proteinchromosome CDS3182112 2337 + 0.506632
argT SBO_2347 lysine-, arginine-, ornithine-binding periplasmic proteinchromosome CDS2335904 783 - 0.503193
artI SBO_0797 arginine 3rd transport system periplasmic binding proteinchromosome CDS805062 732 - 0.501366
artJ SBO_0794 arginine 3rd transport system periplasmic binding proteinchromosome CDS802649 732 - 0.456284
baeR SBO_0905 transcriptional response regulatory proteinchromosome CDS934645 723 + 0.536653
baeS SBO_0904 sensor protein for BaeRchromosome CDS933245 1404 + 0.539174
barA SBO_2667 sensor-regulatorchromosome CDS2671770 2757 + 0.498731
basR SBO_4140 transcriptional regulatory proteinchromosome CDS4182771 669 - 0.529148
basS SBO_4139 sensor protein for basRchromosome CDS4181670 1101 - 0.541326
bolA SBO_0329 possible regulator of murein geneschromosome CDS343286 351 + 0.481481
cheB SBO_1117 protein methylesterasechromosome CDS1121368 939 + 0.528221
cheR SBO_1116 protein glutamate methyltransferasechromosome CDS1120601 765 + 0.541176
cheY SBO_1118 chemotaxis regulatorchromosome CDS1122321 390 + 0.484615
cheZ SBO_1119 CheY protein phophatasechromosome CDS1122721 645 + 0.533333
chpA SBO_2663 ChpAchromosome CDS2667469 336 - 0.46131
chpR SBO_2664 ChpRchromosome CDS2667804 249 - 0.485944
citB SBO_0485 CitBchromosome CDS504271 681 + 0.503671
cmtB SBO_3055 PTS system mannitol-specific enzyme II component, crypticchromosome CDS3054214 444 + 0.421171
cpxA SBO_3929 CpxAchromosome CDS3957178 1374 - 0.545852
cpxR SBO_3930 transcriptional regulator in 2-component systemchromosome CDS3958548 699 - 0.513591
creB SBO_4461 catabolic regulation response regulatorchromosome CDS4514202 666 + 0.551051
creC SBO_4462 catabolite repression sensor kinase for PhoBchromosome CDS4514867 1425 + 0.541754
crp SBO_3339 cyclic AMP receptor proteinchromosome CDS3324863 633 + 0.496051
csrA SBO_2822 carbon storage regulatorchromosome CDS2832873 186 + 0.5
cstA SBO_0459 carbon starvation proteinchromosome CDS478371 2106 + 0.570275
dinI SBO_2003 damage-inducible protein Ichromosome CDS1975199 246 + 0.47561
dksA SBO_0134 dnaK suppressor proteinchromosome CDS146368 456 - 0.526316
envZ SBO_3391 EnzVchromosome CDS3376612 1353 - 0.569106
evgA SBO_2395 putative positive transcription regulatorchromosome CDS2385687 615 + 0.403252
evgS SBO_2396 putative sensor for regulator EvgAchromosome CDS2386306 3594 + 0.411241
fhlA SBO_2789 formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operonschromosome CDS2796819 2079 - 0.525253
fimZ SBO_0429 fimbrial Z proteinchromosome CDS443861 576 - 0.373264
fliY SBO_1086 putative periplasmic binding transport proteinchromosome CDS1096069 801 + 0.498127
fnr SBO_1727 Fnrchromosome CDS1710057 753 + 0.511288
frvA SBO_3916 PTS system fructose-specific IIA componentchromosome CDS3945417 447 - 0.498881
frvR SBO_3913 putative frv operon regulatory proteinchromosome CDS3941147 1749 - 0.496284
gatA SBO_0915 galactitol-specific enzyme IIA of phosphotransferase systemchromosome CDS944777 453 - 0.426049
glnE SBO_2909 glutamine synthetase adenylylating enzymechromosome CDS2911447 2841 - 0.556846
glnG SBO_3880 response regulator for glnchromosome CDS3908189 1410 - 0.566667
glnH SBO_0702 periplasmic glutamine-binding proteinchromosome CDS716933 747 - 0.485944
glnL SBO_3881 histidine protein kinase sensor for GlnG regulatorchromosome CDS3909610 1050 - 0.552381
hisJ SBO_2346 histidine-binding periplasmic protein of high-affinity histidine transport systemchromosome CDS2334901 783 - 0.48659
hnr SBO_1834 Hnrchromosome CDS1812588 1014 - 0.489152
hydG SBO_4025 response regulator of hydrogenase 3 activitychromosome CDS4061723 1227 + 0.566422
hydH SBO_4024 sensor kinase for HydGchromosome CDS4060350 1377 + 0.540305
kdpD SBO_0557 sensor for high-affinity potassium transport systemchromosome CDS572636 2685 - 0.576536
kdpE SBO_0556 regulator of kdp operonchromosome CDS571962 678 - 0.567847
lexA SBO_4074 regulator for SOS(lexA) regulonchromosome CDS4115936 609 - 0.518883
narL SBO_1845 pleiotrophic regulation of anaerobic respirationchromosome CDS1827363 651 + 0.516129
narP SBO_2114 nitrate/nitrite response regulatorchromosome CDS2093733 648 - 0.518519
narQ SBO_2485 sensor for nitrate reductase systemchromosome CDS2475781 1701 + 0.514991
narX SBO_1844 NarXchromosome CDS1825574 1797 + 0.531998
nrfB SBO_4102 formate-dependent nitrite reductase complex penta-heme cytochrome cchromosome CDS4145507 573 + 0.539267
ompR SBO_3392 OmpRchromosome CDS3377961 720 - 0.547222
phoB SBO_0293 positive response regulator for pho regulonchromosome CDS306208 690 + 0.543478
phoH SBO_2038 PhoB-dependent, ATP-binding pho regulon componentchromosome CDS2004659 1065 - 0.521127
phoP SBO_1909 transcriptional regulatory proteinchromosome CDS1889212 672 + 0.46875
phoQ SBO_1910 sensor protein PhoQchromosome CDS1889883 1461 + 0.512663
phoR SBO_0294 positive and negative sensor protein for pho regulonchromosome CDS306955 1296 + 0.528549
pphA SBO_1253 protein phosphatase 1 modulates phosphoproteinschromosome CDS1248969 660 - 0.478788
pphB SBO_2786 protein phosphatase 2chromosome CDS2792819 657 - 0.421613
proQ SBO_1246 activator of ProP osmoprotectant transporterchromosome CDS1241492 699 - 0.532189
pspA SBO_1758 phage shock proteinchromosome CDS1733588 669 - 0.493274
pspC SBO_1756 phage shock proteinchromosome CDS1732951 360 - 0.505556
pspF SBO_1759 psp operon transcriptional activatorchromosome CDS1734407 993 + 0.519637
ptsN SBO_3178 phosphotransferase system enzyme IIAchromosome CDS3188068 492 - 0.520325
ptsP SBO_2721 PTS system enzyme Ichromosome CDS2731437 2247 - 0.538051
ptxA SBO_4260 putative PTS system enzyme II A componentchromosome CDS4311434 465 - 0.554839
qseB SBO_2884 QseBchromosome CDS2888396 660 + 0.513636
qseC SBO_2885 QseCchromosome CDS2889052 1350 + 0.526667
rcsA SBO_1056 positive regulator for ctr capsule biosynthesis, positive transcription factorchromosome CDS1069835 624 - 0.378205
rcsB SBO_2090 positive response regulator for colanic capsule biosynthesischromosome CDS2068776 651 - 0.47619
rcsC SBO_2089 sensor for ctr capsule biosynthesischromosome CDS2065775 2802 + 0.510707
relA SBO_2665 (p)ppGpp synthetase Ichromosome CDS2668130 2235 - 0.540492
rfaP SBO_3632 RfaPchromosome CDS3650756 798 - 0.474937
rseA SBO_2600 sigma-E factorchromosome CDS2605833 651 - 0.520737
rseB SBO_2599 regulates activity of sigma-E factorchromosome CDS2604877 957 - 0.508882
rseC SBO_2598 sigma-E factorchromosome CDS2604401 480 - 0.554167
rstA SBO_1528 response transcriptional regulatory proteinchromosome CDS1509339 729 - 0.486968
rstB SBO_1527 sensor histidine protein kinasechromosome CDS1508034 1302 - 0.506912
rtcR SBO_3410 putative 2-component regulatorchromosome CDS3401056 1599 + 0.545341
rtn SBO_2148 conserved hypothetical proteinchromosome CDS2122734 1557 - 0.504817
spoT SBO_3727 (p)ppGpp synthetase IIchromosome CDS3743804 2109 - 0.539118
spy SBO_1347 Spychromosome CDS1331191 471 + 0.505308
torR SBO_2236 response transcriptional regulator for torAchromosome CDS2223178 693 + 0.52381
torS SBO_2238 sensor protein torSchromosome CDS2224945 2715 + 0.541436
tsr SBO_4414 methyl-accepting chemotaxis protein Ichromosome CDS4468358 1656 + 0.547705
uhpA SBO_3700 UhpAchromosome CDS3715333 591 + 0.588832
uhpB SBO_3701 UhpBchromosome CDS3715920 1506 + 0.573041
umuD SBO_1889 UmuDchromosome CDS1874304 420 - 0.483333
uspA SBO_3493 universal stress proteinchromosome CDS3485070 435 + 0.494253
uvrY SBO_1092 putative 2-component transcriptional regulatorchromosome CDS1101093 657 + 0.496195
wzb SBO_0888 probable protein-tyrosine-phosphatasechromosome CDS906531 444 - 0.536036
yaeG SBO_0151 conserved hypothetical proteinchromosome CDS168474 1164 + 0.526632
yaiC SBO_0280 conserved hypothetical proteinchromosome CDS292873 1116 + 0.537634
ybdQ SBO_0472 conserved hypothetical proteinchromosome CDS491884 429 - 0.496504
ybeJ SBO_0518 putative periplasmic binding transport proteinchromosome CDS536130 909 - 0.484048
ybeZ SBO_0524 putative ATP-binding protein in pho regulonchromosome CDS543219 1080 - 0.54537
ybiI SBO_0691 conserved hypothetical proteinchromosome CDS704978 267 - 0.513109
yccY SBO_2248 putative phosphatasechromosome CDS2235627 459 + 0.520697
yciR SBO_1779 conserved hypothetical proteinchromosome CDS1756340 1986 + 0.485398
ydaA SBO_1728 conserved hypothetical proteinchromosome CDS1710961 951 + 0.50368
yeaG SBO_1310 conserved hypothetical proteinchromosome CDS1294441 1935 - 0.503876
yeaI SBO_1308 conserved hypothetical proteinchromosome CDS1291423 1476 - 0.382791
yecG SBO_1113 putative regulatorchromosome CDS1118289 429 - 0.452214
yedV SBO_1038 putative 2-component sensor proteinchromosome CDS1055009 1359 + 0.3922
yedW SBO_1037 putative 2-component transcriptional regulatorchromosome CDS1054290 720 + 0.431944
yehT SBO_0948 conserved hypothetical proteinchromosome CDS979817 735 - 0.496599
yehU SBO_0949 putative 2-component sensor proteinchromosome CDS980533 1686 - 0.506524
yfeA SBO_2421 conserved hypothetical proteinchromosome CDS2417664 2307 - 0.48938
yfhA SBO_2582 putative 2-component transcriptional regulatorchromosome CDS2584546 1335 - 0.540824
yfhK SBO_2584 putative 2-component sensor proteinchromosome CDS2586748 1491 - 0.525151
ygaA SBO_2809 putative 2-component transcriptional regulatorchromosome CDS2819482 1590 + 0.558491
ygaG SBO_2830 conserved hypothetical proteinchromosome CDS2837002 516 + 0.515504
ygiM SBO_2911 conserved hypothetical proteinchromosome CDS2915853 621 + 0.520129
yhdA SBO_3136 conserved hypothetical proteinchromosome CDS3138105 1941 + 0.50541
yhdW SBO_3262 putative periplasmic binding transport proteinchromosome CDS3267384 966 + 0.485507
yhjB SBO_3519 putative regulatorchromosome CDS3516858 603 - 0.484245
yhjH SBO_3524 conserved hypothetical proteinchromosome CDS3524038 771 - 0.523995
yhjK SBO_3528 conserved hypothetical proteinchromosome CDS3529247 1956 - 0.52454
yihK SBO_3883 putative GTP-binding factorchromosome CDS3912615 1824 + 0.531798
yiiO SBO_3931 Uncharacterized periplasmic proteinchromosome CDS3959393 504 + 0.498016
yiiT SBO_3940 putative regulatorchromosome CDS3966868 429 + 0.426573
yjaI SBO_4023 conserved hypothetical proteinchromosome CDS4059687 567 - 0.516755
yjdG SBO_4328 putative 2-component transcriptional regulatorchromosome CDS4379367 720 - 0.5
yjdH SBO_4329 putative 2-component sensor proteinchromosome CDS4380083 1632 - 0.5
yjfJ SBO_4273 putative alpha helical proteinchromosome CDS4322250 699 - 0.51216
yjiY SBO_4402 putative carbon starvation proteinchromosome CDS4454480 2166 - 0.558633
yjjQ SBO_4425 putative regulatorchromosome CDS4480957 726 + 0.443526
ylaB SBO_0353 conserved hypothetical proteinchromosome CDS368134 1497 - 0.480294
ylbE SBO_0424 conserved hypothetical proteinchromosome CDS438838 1002 - 0.573852
ymfL SBO_0254 conserved hypothetical proteinchromosome CDS269875 570 - 0.489474
ynaF SBO_1690 putative filament proteinchromosome CDS1677190 507 + 0.473373
yojN SBO_2091 putative 2-component sensor proteinchromosome CDS2069443 2673 - 0.493079