Gene list
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COG category: Signal transduction mechanisms
Organism: Escherichia coli W3110, K-12
Number of genes found: 187
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| Escherichia coli W3110, K-12 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| aceK | isocitrate dehydrogenase kinase/phosphatase | RecName: Full=Isocitrate dehydrogenase kinase/phosphatase; Short=IDH kinase/phosphatase; Short=IDHK/P; EC=2.7.11.5; EC=3.1.3.-; | chromosome | CDS | 4222186 | 1737 | + | 0.527922 | |
| aer | fused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis component | RecName: Full=Aerotaxis receptor; | chromosome | CDS | 3216212 | 1521 | - | 0.547666 | |
| apaH | diadenosine tetraphosphatase | RecName: Full=Bis(5-nucleosyl)-tetraphosphatase [symmetrical]; EC=3.6.1.41; AltName: Full=Ap4A hydrolase; AltName: Full=Diadenosine 5,5-P1,P4-tetraphosphate pyrophosphohydrolase; AltName: Full=Diadenosine tetraphosphatase; | chromosome | CDS | 50380 | 843 | - | 0.557533 | |
| arcA | DNA-binding response regulator in two-component regulatory system with ArcB or CpxA | RecName: Full=Aerobic respiration control protein ArcA; AltName: Full=Dye resistance protein; | chromosome | CDS | 4644270 | 717 | - | 0.51046 | |
| arcB | hybrid sensory histidine kinase in two-component regulatory system with ArcA | RecName: Full=Aerobic respiration control sensor protein ArcB; EC=2.7.13.3; | chromosome | CDS | 3350544 | 2337 | - | 0.506205 | |
| argT | lysine/arginine/ornithine transporter subunit | RecName: Full=Lysine-arginine-ornithine-binding periplasmic protein; Short=LAO-binding protein; Flags: Precursor; | chromosome | CDS | 2432455 | 783 | - | 0.501916 | |
| artI | arginine transporter subunit | RecName: Full=Putative ABC transporter arginine-binding protein 2; Flags: Precursor; | chromosome | CDS | 902679 | 732 | - | 0.502732 | |
| artJ | arginine transporter subunit | RecName: Full=ABC transporter arginine-binding protein 1; Flags: Precursor; | chromosome | CDS | 900266 | 732 | - | 0.448087 | |
| atoC | fused response regulator of ato opeon, in two-component system with AtoS | RecName: Full=Acetoacetate metabolism regulatory protein AtoC; AltName: Full=Ornithine decarboxylase antizyme; AltName: Full=Ornithine/arginine decarboxylase inhibitor; | chromosome | CDS | 2326536 | 1386 | + | 0.489899 | |
| atoS | sensory histidine kinase in two-component regulatory system with AtoC | RecName: Full=Signal transduction histidine-protein kinase AtoS; EC=2.7.13.3; | chromosome | CDS | 2324713 | 1827 | + | 0.485495 | |
| baeR | DNA-binding response regulator in two-component regulatory system with BaeS | RecName: Full=Transcriptional regulatory protein BaeR; | chromosome | CDS | 2166413 | 723 | + | 0.540802 | |
| baeS | sensory histidine kinase in two-component regulatory system with BaeR | RecName: Full=Signal transduction histidine-protein kinase BaeS; EC=2.7.13.3; | chromosome | CDS | 2165013 | 1404 | + | 0.537037 | |
| barA | hybrid sensory histidine kinase, in two-component regulatory system with UvrY | RecName: Full=Signal transduction histidine-protein kinase BarA; EC=2.7.13.3; | chromosome | CDS | 2913713 | 2757 | + | 0.498368 | |
| basR | DNA-binding response regulator in two-component regulatory system with BasS | RecName: Full=Transcriptional regulatory protein BasR; | chromosome | CDS | 4337960 | 669 | - | 0.532138 | |
| basS | sensory histidine kinase in two-component regulatory system with BasR | RecName: Full=Sensor protein BasS; EC=2.7.13.3; | chromosome | CDS | 4336859 | 1092 | - | 0.542125 | |
| bglJ | DNA-binding transcriptional regulator | RecName: Full=Transcriptional activator protein BglJ; | chromosome | CDS | 4608894 | 624 | + | 0.456731 | |
| bipA | GTP-binding protein | RecName: Full=GTP-binding protein TypA/BipA; AltName: Full=Tyrosine phosphorylated protein A; | chromosome | CDS | 3576451 | 1824 | - | 0.534539 | |
| bolA | regulator of penicillin binding proteins and beta lactamase transcription (morphogene) | RecName: Full=Protein BolA; | chromosome | CDS | 453696 | 318 | + | 0.484277 | |
| cdaR | DNA-binding transcriptional regulator | RecName: Full=Carbohydrate diacid regulator; AltName: Full=Sugar diacid regulator; | chromosome | CDS | 182463 | 1158 | + | 0.528497 | |
| cheA | fused chemotactic sensory histidine kinase (soluble) in two-component regulatory system with CheB and CheY | RecName: Full=Chemotaxis protein CheA; EC=2.7.13.3; | chromosome | CDS | 1975074 | 1965 | - | 0.531298 | |
| cheB | fused chemotaxis regulator and protein-glutamate methylesterase in two-component regulatory system with CheA | RecName: Full=Chemotaxis response regulator protein-glutamate methylesterase; EC=3.1.1.61; | chromosome | CDS | 1969166 | 1050 | - | 0.542857 | |
| cheR | chemotaxis regulator | RecName: Full=Chemotaxis protein methyltransferase; EC=2.1.1.80; | chromosome | CDS | 1970218 | 861 | - | 0.542393 | |
| cheW | purine-binding chemotaxis protein | RecName: Full=Chemotaxis protein CheW; | chromosome | CDS | 1974550 | 504 | - | 0.519841 | |
| cheY | chemotaxis regulator transmitting signal to flagellar motor component | RecName: Full=Chemotaxis protein CheY; | chromosome | CDS | 1968762 | 390 | - | 0.492308 | |
| cheZ | chemotaxis regulator | RecName: Full=Protein phosphatase CheZ; EC=3.1.3.-; AltName: Full=Chemotaxis protein CheZ; | chromosome | CDS | 1968107 | 645 | - | 0.534884 | |
| chpA | toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease | RecName: Full=mRNA interferase MazF; EC=3.1.-.-; AltName: Full=Endoribonuclease MazF; AltName: Full=Toxin MazF; | chromosome | CDS | 2909412 | 336 | - | 0.46131 | |
| chpB | toxin of the ChpB-ChpS toxin-antitoxin system | RecName: Full=mRNA interferase ChpB; EC=3.1.-.-; AltName: Full=Endoribonuclease ChpB; AltName: Full=Toxin ChpB; | chromosome | CDS | 4453372 | 351 | + | 0.538462 | |
| chpR | antitoxin of the ChpA-ChpR toxin-antitoxin system | RecName: Full=Antitoxin MazE; | chromosome | CDS | 2909747 | 249 | - | 0.485944 | |
| chpS | antitoxin of the ChpB-ChpS toxin-antitoxin system | RecName: Full=Antitoxin ChpS; | chromosome | CDS | 4453127 | 252 | + | 0.503968 | |
| citA | sensory histidine kinase in two-component regulatory system with citB | RecName: Full=Sensor histidine kinase DpiB; EC=2.7.13.3; AltName: Full=Sensor histidine kinase CitA; | chromosome | CDS | 651458 | 1659 | + | 0.500904 | |
| citB | DNA-binding response regulator in two-component regulatory system with citA | RecName: Full=Transcriptional regulatory protein DpiA; AltName: Full=Destabilizer of plasmid inheritance; | chromosome | CDS | 653085 | 681 | + | 0.50514 | |
| cmtB | predicted mannitol-specific enzyme IIA component of PTS | RecName: Full=Mannitol-specific cryptic phosphotransferase enzyme IIA component; EC=2.7.1.-; AltName: Full=EIIA-Mtl; AltName: Full=EIII-Mtl; AltName: Full=PTS system mannitol-specific EIIA component; | chromosome | CDS | 3077543 | 444 | - | 0.423423 | |
| cpxA | sensory histidine kinase in two-component regulatory system with CpxR | RecName: Full=Sensor protein CpxA; EC=2.7.13.3; | chromosome | CDS | 3531706 | 1374 | + | 0.545852 | |
| cpxP | periplasmic protein combats stress | RecName: Full=Periplasmic protein CpxP; Flags: Precursor; | chromosome | CDS | 3530361 | 501 | - | 0.500998 | |
| cpxR | DNA-binding response regulator in two-component regulatory system with CpxA | RecName: Full=Transcriptional regulatory protein CpxR; | chromosome | CDS | 3531011 | 699 | + | 0.513591 | |
| creB | DNA-binding response regulator in two-component regulatory system with CreC | RecName: Full=Transcriptional regulatory protein CreB; | chromosome | CDS | 4640687 | 690 | + | 0.552174 | |
| creC | sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon | RecName: Full=Sensor protein CreC; EC=2.7.13.3; | chromosome | CDS | 4641376 | 1425 | + | 0.538947 | |
| crp | DNA-binding transcriptional dual regulator | RecName: Full=cAMP-activated global transcriptional regulator CRP; AltName: Full=Catabolite activator protein; Short=CAP; AltName: Full=Catabolite gene activator; AltName: Full=cAMP receptor protein; Short=CRP; AltName: Full=cAMP regulatory protein; | chromosome | CDS | 4153664 | 633 | - | 0.492891 | |
| csrA | pleiotropic regulatory protein for carbon source metabolism | RecName: Full=Carbon storage regulator; | chromosome | CDS | 2817617 | 186 | - | 0.494624 | |
| cstA | carbon starvation protein | chromosome | CDS | 629117 | 2106 | + | 0.572175 | ||
| cusR | DNA-binding response regulator in two-component regulatory system with CusS | RecName: Full=Transcriptional regulatory protein CusR; | chromosome | CDS | 593983 | 684 | - | 0.538012 | |
| cusS | sensory histidine kinase in two-component regulatory system with CusR, senses copper ions | RecName: Full=Sensor kinase CusS; EC=2.7.13.3; | chromosome | CDS | 592551 | 1443 | - | 0.520443 | |
| dcuR | DNA-binding response regulator in two-component regulatory system with DcuS | RecName: Full=Transcriptional regulatory protein DcuR; | chromosome | CDS | 4353993 | 720 | - | 0.493056 | |
| dcuS | sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration | RecName: Full=Sensor histidine kinase DcuS; EC=2.7.13.3; AltName: Full=Fumarate sensor; | chromosome | CDS | 4354709 | 1632 | - | 0.499387 | |
| dksA | transcriptional regulator of rRNA transcription, DnaK suppressor protein | RecName: Full=RNA polymerase-binding transcription factor DksA; AltName: Full=DnaK suppressor protein; | chromosome | CDS | 160149 | 456 | - | 0.526316 | |
| dos | cAMP phosphodiesterase, heme-regulated | RecName: Full=Oxygen sensor protein DosP; EC=3.1.4.52; AltName: Full=Direct oxygen-sensing phosphodiesterase; Short=Direct oxygen sensor protein; AltName: Full=Ec DOS; AltName: Full=Heme-regulated cyclic di-GMP phosphodiesterase,; | chromosome | CDS | 1565048 | 2400 | - | 0.502083 | |
| envZ | sensory histidine kinase in two-component regulatory system with OmpR | RecName: Full=Osmolarity sensor protein EnvZ; EC=2.7.13.3; | chromosome | CDS | 4104548 | 1353 | + | 0.570584 | |
| etp | phosphotyrosine-protein phosphatase | RecName: Full=Low molecular weight protein-tyrosine-phosphatase etp; EC=3.1.3.48; | chromosome | CDS | 1044652 | 447 | - | 0.52349 | |
| evgA | DNA-binding response regulator in two-component regulatory system with EvgS | RecName: Full=Positive transcription regulator EvgA; | chromosome | CDS | 2489201 | 615 | + | 0.4 | |
| evgS | hybrid sensory histidine kinase in two-component regulatory system with EvgA | RecName: Full=Sensor protein EvgS; EC=2.7.13.3; Flags: Precursor; | chromosome | CDS | 2489820 | 3594 | + | 0.40818 | |
| fecR | transmembrane signal transducer for ferric citrate transport | RecName: Full=Protein FecR; | chromosome | CDS | 4521444 | 954 | - | 0.590147 | |
| fhlA | DNA-binding transcriptional activator | RecName: Full=Formate hydrogenlyase transcriptional activator; | chromosome | CDS | 2852994 | 2079 | + | 0.525734 | |
| fimZ | predicted DNA-binding transcriptional regulator | RecName: Full=Fimbriae Z protein; | chromosome | CDS | 563071 | 633 | - | 0.366509 | |
| fliY | cystine transporter subunit | RecName: Full=Cystine-binding periplasmic protein; Short=CBP; AltName: Full=Protein FliY; AltName: Full=Sulfate starvation-induced protein 7; Short=SSI7; Flags: Precursor; | chromosome | CDS | 2001722 | 801 | - | 0.498127 | |
| fnr | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth | RecName: Full=Fumarate and nitrate reduction regulatory protein; | chromosome | CDS | 1400488 | 753 | - | 0.5166 | |
| frvA | predicted enzyme IIA component of PTS | RecName: Full=Fructose-like phosphotransferase enzyme IIA component; EC=2.7.1.-; AltName: Full=PTS system fructose-like EIIA component; | chromosome | CDS | 3543858 | 447 | + | 0.501119 | |
| frvR | predicted regulator | RecName: Full=Putative frv operon regulatory protein; Includes: RecName: Full=Putative phosphotransferase EIIA component; EC=2.7.1.-; AltName: Full=Putative PTS system EIIA component; | chromosome | CDS | 3546826 | 1749 | + | 0.500286 | |
| gatA | galactitol-specific enzyme IIA component of PTS | RecName: Full=Galactitol-specific phosphotransferase enzyme IIA component; EC=2.7.1.-; AltName: Full=EIIA-Gat; AltName: Full=PTS system galactitol-specific EIIA component; | chromosome | CDS | 2178069 | 315 | - | 0.447619 | |
| glnE | fused deadenylyltransferase and adenylyltransferase for glutamine synthetase | RecName: Full=Glutamate-ammonia-ligase adenylyltransferase; EC=2.7.7.42; AltName: Full=Glutamine-synthetase adenylyltransferase; Short=ATase; AltName: Full=[Glutamate--ammonia-ligase] adenylyltransferase; | chromosome | CDS | 3195457 | 2841 | - | 0.559662 | |
| glnG | fused DNA-binding response regulator in two-component regulatory system with GlnL, nitrogen regulator I (NRI) | RecName: Full=Nitrogen regulation protein NR(I); | chromosome | CDS | 3581403 | 1410 | + | 0.569504 | |
| glnH | glutamine transporter subunit | RecName: Full=Glutamine-binding periplasmic protein; Short=GlnBP; Flags: Precursor; | chromosome | CDS | 847680 | 747 | - | 0.487282 | |
| glnL | sensory kinase in two-component regulatory system with GlnG | RecName: Full=Nitrogen regulation protein NR(II); EC=2.7.13.3; | chromosome | CDS | 3580342 | 1050 | + | 0.552381 | |
| gltI | glutamate and aspartate transporter subunit | RecName: Full=Glutamate/aspartate periplasmic-binding protein; Flags: Precursor; | chromosome | CDS | 687261 | 909 | - | 0.487349 | |
| gmr | modulator of Rnase II stability | RecName: Full=Cyclic di-GMP phosphodiesterase Gmr; EC=3.1.4.52; | chromosome | CDS | 1346471 | 1986 | - | 0.484894 | |
| hisJ | histidine/lysine/arginine/ornithine transporter subunit | RecName: Full=Histidine-binding periplasmic protein; Short=HBP; Flags: Precursor; | chromosome | CDS | 2431452 | 783 | - | 0.487867 | |
| htrG | predicted signal transduction protein | RecName: Full=Uncharacterized protein YgiM; Flags: Precursor; | chromosome | CDS | 3199863 | 621 | + | 0.52657 | |
| hyfR | DNA-binding transcriptional activator, formate sensing | chromosome | CDS | 2610556 | 2013 | + | 0.52608 | ||
| kdpD | fused sensory histidine kinase in two-component regulatory system with KdpE | RecName: Full=Sensor protein KdpD; EC=2.7.13.3; | chromosome | CDS | 722152 | 2685 | - | 0.575791 | |
| kdpE | DNA-binding response regulator in two-component regulatory system with KdpD | RecName: Full=KDP operon transcriptional regulatory protein KdpE; | chromosome | CDS | 721478 | 678 | - | 0.566372 | |
| lexA | DNA-binding transcriptional repressor | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 4260705 | 609 | + | 0.518883 | |
| luxS | S-ribosylhomocysteinase | RecName: Full=S-ribosylhomocysteine lyase; EC=4.4.1.21; AltName: Full=AI-2 synthesis protein; AltName: Full=Autoinducer-2 production protein LuxS; | chromosome | CDS | 2812874 | 516 | - | 0.515504 | |
| narL | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) | RecName: Full=Nitrate/nitrite response regulator protein NarL; | chromosome | CDS | 1276756 | 651 | - | 0.517665 | |
| narP | DNA-binding response regulator in two-component regulatory system with NarQ or NarX | RecName: Full=Nitrate/nitrite response regulator protein NarP; | chromosome | CDS | 2293834 | 648 | + | 0.524691 | |
| narQ | sensory histidine kinase in two-component regulatory system with NarP (NarL) | RecName: Full=Nitrate/nitrite sensor protein NarQ; EC=2.7.13.3; | chromosome | CDS | 2584387 | 1701 | + | 0.516167 | |
| narX | sensory histidine kinase in two-component regulatory system with NarL | RecName: Full=Nitrate/nitrite sensor protein NarX; EC=2.7.13.3; | chromosome | CDS | 1277399 | 1797 | - | 0.533667 | |
| norR | DNA-binding transcriptional activator | RecName: Full=Anaerobic nitric oxide reductase transcription regulator NorR; | chromosome | CDS | 2829431 | 1515 | - | 0.568317 | |
| ompR | DNA-binding response regulator in two-component regulatory system with EnvZ | RecName: Full=Transcriptional regulatory protein OmpR; | chromosome | CDS | 4103832 | 720 | + | 0.551389 | |
| phoB | DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) | RecName: Full=Phosphate regulon transcriptional regulatory protein PhoB; | chromosome | CDS | 416366 | 690 | + | 0.544928 | |
| phoH | conserved hypothetical protein with nucleoside triphosphate hydrolase domain | RecName: Full=Protein PhoH; AltName: Full=Phosphate starvation-inducible protein PsiH; | chromosome | CDS | 1085414 | 1065 | + | 0.522066 | |
| phoP | DNA-binding response regulator in two-component regulatory system with PhoQ | RecName: Full=Transcriptional regulatory protein PhoP; | chromosome | CDS | 1191353 | 672 | - | 0.477679 | |
| phoQ | sensory histidine kinase in two-compoent regulatory system with PhoP | RecName: Full=Sensor protein PhoQ; EC=2.7.13.3; EC=3.1.3.-; AltName: Full=Sensor histidine protein kinase/phosphatase PhoQ; | chromosome | CDS | 1189893 | 1461 | - | 0.513347 | |
| phoR | sensory histidine kinase in two-component regulatory system with PhoB | RecName: Full=Phosphate regulon sensor protein PhoR; EC=2.7.13.3; | chromosome | CDS | 417113 | 1296 | + | 0.530093 | |
| pphA | serine/threonine-specific protein phosphatase 1 | RecName: Full=Serine/threonine-protein phosphatase 1; EC=3.1.3.16; | chromosome | CDS | 1924027 | 657 | - | 0.47793 | |
| pphB | serine/threonine-specific protein phosphatase 2 | RecName: Full=Serine/threonine-protein phosphatase 2; EC=3.1.3.16; | chromosome | CDS | 2858416 | 657 | + | 0.423135 | |
| proQ | predicted structural transport element | RecName: Full=ProP effector; | chromosome | CDS | 1916550 | 699 | - | 0.529328 | |
| prpR | DNA-binding transcriptional regulator | RecName: Full=Propionate catabolism operon regulatory protein; | chromosome | CDS | 346081 | 1587 | - | 0.551985 | |
| pspA | regulatory protein for phage-shock-protein operon | RecName: Full=Phage shock protein A; | chromosome | CDS | 1369793 | 669 | + | 0.493274 | |
| pspC | transcriptional activator | RecName: Full=Phage shock protein C; | chromosome | CDS | 1370739 | 360 | + | 0.502778 | |
| pspF | DNA-binding transcriptional activator | RecName: Full=Psp operon transcriptional activator; AltName: Full=Phage shock protein F; | chromosome | CDS | 1368649 | 978 | - | 0.517382 | |
| ptsN | sugar-specific enzyme IIA component of PTS | RecName: Full=Nitrogen regulatory protein; EC=2.7.1.-; AltName: Full=Enzyme IIA-NTR; AltName: Full=PTS system EIIA component; AltName: Full=Phosphotransferase enzyme IIA component; | chromosome | CDS | 3346433 | 492 | + | 0.522358 | |
| ptsP | fused PEP-protein phosphotransferase (enzyme I) of PTS system | RecName: Full=Phosphoenolpyruvate-protein phosphotransferase PtsP; EC=2.7.3.9; AltName: Full=Enzyme I-Ntr; AltName: Full=Phosphotransferase system, enzyme I; | chromosome | CDS | 2964844 | 2247 | - | 0.538941 | |
| qseB | DNA-binding response regulator in two-component regulatory system with QseC | RecName: Full=Transcriptional regulatory protein QseB; | chromosome | CDS | 3168484 | 660 | + | 0.516667 | |
| qseC | sensory histidine kinase in two-component regulatory system with QseB | RecName: Full=Sensor protein QseC; EC=2.7.13.3; | chromosome | CDS | 3169140 | 1350 | + | 0.53037 | |
| rcsB | DNA-binding response regulator in two-component regulatory system with RcsC and YojN | RecName: Full=Transcriptional regulatory protein RcsB; AltName: Full=Capsular synthesis regulator component B; | chromosome | CDS | 2319511 | 651 | + | 0.477727 | |
| rcsC | hybrid sensory kinase in two-component regulatory system with RcsB and YojN | RecName: Full=Sensor histidine kinase RcsC; EC=2.7.13.3; AltName: Full=Capsular synthesis regulator component C; | chromosome | CDS | 2320361 | 375 | - | 0.501333 | |
| rcsC | hybrid sensory kinase in two-component regulatory system with RcsB and YojN | RecName: Full=Sensor histidine kinase RcsC; EC=2.7.13.3; AltName: Full=Capsular synthesis regulator component C; | chromosome | CDS | 2322075 | 2424 | - | 0.509076 | |
| rcsD | phosphotransfer intermediate protein in two-component regulatory system with RcsBC | RecName: Full=Phosphotransferase RcsD; EC=2.7.2.-; AltName: Full=Phosphotransfer intermediate RcsD; | chromosome | CDS | 2316822 | 2673 | + | 0.493827 | |
| relA | (p)ppGpp synthetase I/GTP pyrophosphokinase | RecName: Full=GTP pyrophosphokinase; EC=2.7.6.5; AltName: Full=(p)ppGpp synthase; AltName: Full=ATP:GTP 3-pyrophosphotransferase; AltName: Full=ppGpp synthase I; | chromosome | CDS | 2910073 | 2235 | - | 0.537808 | |
| rfaP | kinase that phosphorylates core heptose of lipopolysaccharide | RecName: Full=Lipopolysaccharide core heptose(I) kinase RfaP; EC=2.7.1.-; | chromosome | CDS | 3834465 | 798 | + | 0.433584 | |
| rfaZ | lipopolysaccharide core biosynthesis protein | RecName: Full=Lipopolysaccharide core biosynthesis protein RfaZ; | chromosome | CDS | 3840219 | 852 | + | 0.325117 | |
| rseA | anti-sigma factor | RecName: Full=Anti-sigma-E factor RseA; AltName: Full=Regulator of SigE; AltName: Full=Sigma-E anti-sigma factor RseA; AltName: Full=Sigma-E factor negative regulatory protein; | chromosome | CDS | 2707410 | 651 | - | 0.522273 | |
| rseB | anti-sigma factor | RecName: Full=Sigma-E factor regulatory protein RseB; Flags: Precursor; | chromosome | CDS | 2706454 | 957 | - | 0.507837 | |
| rseC | RseC protein involved in reduction of the SoxR iron-sulfur cluster | RecName: Full=Protein RseC; | chromosome | CDS | 2705978 | 480 | - | 0.547917 | |
| rssB | response regulator of RpoS | RecName: Full=Regulator of RpoS; | chromosome | CDS | 1291819 | 1014 | + | 0.486193 | |
| rstA | DNA-bindng response regulator in two-component regulatory system with RstB | RecName: Full=Transcriptional regulatory protein RstA; | chromosome | CDS | 1683864 | 729 | + | 0.491084 | |
| rstB | sensory histidine kinase in two-component regulatory system with RstA | RecName: Full=Sensor protein RstB; EC=2.7.13.3; | chromosome | CDS | 1684596 | 1302 | + | 0.506912 | |
| rtcR | sigma 54-dependent transcriptional regulator of rtcBA expression | RecName: Full=Transcriptional regulatory protein RtcR; | chromosome | CDS | 4080550 | 1599 | - | 0.557849 | |
| rtn | conserved hypothetical protein | RecName: Full=Protein Rtn; | chromosome | CDS | 2274060 | 1557 | + | 0.505459 | |
| sgcA | predicted phosphotransferase enzyme IIA component | RecName: Full=Putative phosphotransferase IIA component SgcA; EC=2.7.1.-; AltName: Full=Putative PTS system EIIA component; | chromosome | CDS | 4532229 | 432 | - | 0.543981 | |
| sixA | phosphohistidine phosphatase | RecName: Full=Phosphohistidine phosphatase SixA; EC=3.1.3.-; AltName: Full=RX6; | chromosome | CDS | 2461773 | 486 | - | 0.532922 | |
| spoT | bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | RecName: Full=Bifunctional (p)ppGpp synthase/hydrolase SpoT; Includes: RecName: Full=GTP pyrophosphokinase; EC=2.7.6.5; AltName: Full=(p)ppGpp synthase; AltName: Full=ATP:GTP 3-pyrophosphotransferase; AltName: Full=Stringent response-like protein; AltName: Full=ppGpp synthase II; Includes: RecName: Full=Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; EC=3.1.7.2; AltName: Full=Penta-phosphate guanosine-3-pyrophosphohydrolase; Short=(ppGpp)ase; | chromosome | CDS | 3815907 | 2109 | - | 0.537221 | |
| spy | envelope stress induced periplasmic protein | RecName: Full=Spheroplast protein Y; Flags: Precursor; | chromosome | CDS | 1826854 | 486 | - | 0.50823 | |
| tap | methyl-accepting protein IV | RecName: Full=Methyl-accepting chemotaxis protein IV; Short=MCP-IV; AltName: Full=Dipeptide chemoreceptor protein; | chromosome | CDS | 1971097 | 1602 | - | 0.535581 | |
| tar | methyl-accepting chemotaxis protein II | RecName: Full=Methyl-accepting chemotaxis protein II; Short=MCP-II; AltName: Full=Aspartate chemoreceptor protein; | chromosome | CDS | 1972744 | 1662 | - | 0.527677 | |
| torR | DNA-binding response regulator in two-component regulatory system with TorS | RecName: Full=TorCAD operon transcriptional regulatory protein TorR; | chromosome | CDS | 1057684 | 693 | - | 0.52381 | |
| torS | hybrid sensory histidine kinase in two-component regulatory system with TorR | RecName: Full=Sensor protein TorS; EC=2.7.13.3; | chromosome | CDS | 1053856 | 2745 | - | 0.537705 | |
| trg | methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor | RecName: Full=Methyl-accepting chemotaxis protein III; Short=MCP-III; AltName: Full=Ribose and galactose chemoreceptor protein; | chromosome | CDS | 1494184 | 1641 | + | 0.512492 | |
| tsr | methyl-accepting chemotaxis protein I, serine sensor receptor | RecName: Full=Methyl-accepting chemotaxis protein I; Short=MCP-I; AltName: Full=Serine chemoreceptor protein; | chromosome | CDS | 4596337 | 1656 | + | 0.546498 | |
| uhpA | DNA-binding response regulator in two-component regulatory system wtih UhpB | RecName: Full=Transcriptional regulatory protein UhpA; | chromosome | CDS | 3789689 | 591 | + | 0.588832 | |
| uhpB | sensory histidine kinase in two-component regulatory sytem with UhpA | RecName: Full=Sensor protein UhpB; EC=2.7.13.3; | chromosome | CDS | 3790279 | 1503 | + | 0.570858 | |
| ulaC | L-ascorbate-specific enzyme IIA component of PTS | RecName: Full=Ascorbate-specific phosphotransferase enzyme IIA component; EC=2.7.1.-; AltName: Full=PTS system ascorbate-specific EIIA component; | chromosome | CDS | 4426388 | 465 | + | 0.539785 | |
| umuD | DNA polymerase V, subunit D | RecName: Full=Protein UmuD; EC=3.4.21.-; Contains: RecName: Full=Protein UmuD; | chromosome | CDS | 1232344 | 420 | + | 0.480952 | |
| uspA | universal stress global response regulator | RecName: Full=Universal stress protein A; | chromosome | CDS | 3999870 | 435 | - | 0.491954 | |
| uspE | stress-induced protein | RecName: Full=Universal stress protein E; | chromosome | CDS | 1399386 | 951 | - | 0.505783 | |
| uspF | stress-induced protein, ATP-binding protein | RecName: Full=Universal stress protein F; | chromosome | CDS | 1436899 | 435 | - | 0.485057 | |
| uspG | universal stress protein UP12 | RecName: Full=Universal stress protein G; | chromosome | CDS | 640662 | 429 | - | 0.498834 | |
| uvrY | DNA-binding response regulator in two-component regulatory system with BarA | RecName: Full=Response regulator UvrY; | chromosome | CDS | 1996840 | 657 | - | 0.497717 | |
| wzb | protein-tyrosine phosphatase | RecName: Full=Low molecular weight protein-tyrosine-phosphatase wzb; EC=3.1.3.48; | chromosome | CDS | 2137792 | 444 | - | 0.545045 | |
| yahA | predicted DNA-binding transcriptional regulator | RecName: Full=Cyclic di-GMP phosphodiesterase YahA; EC=3.1.4.-; | chromosome | CDS | 331595 | 1089 | + | 0.459137 | |
| yaiC | predicted diguanylate cyclase | RecName: Full=Probable diguanylate cyclase AdrA; Short=DGC; EC=2.7.7.65; | chromosome | CDS | 402927 | 1116 | + | 0.536738 | |
| ybeZ | hypothetical protein with nucleoside triphosphate hydrolase domain | RecName: Full=PhoH-like protein; | chromosome | CDS | 692760 | 1080 | - | 0.542593 | |
| ybiI | conserved hypothetical protein | RecName: Full=Uncharacterized protein YbiI; | chromosome | CDS | 838612 | 267 | - | 0.520599 | |
| ycdT | predicted diguanylate cyclase | RecName: Full=Probable diguanylate cyclase YcdT; Short=DGC; EC=2.7.7.65; | chromosome | CDS | 1093298 | 1359 | + | 0.384842 | |
| ycgF | predicted FAD-binding phosphodiesterase | RecName: Full=Blue light- and temperature-regulated antirepressor YcgF; Short=Blrp; | chromosome | CDS | 1215841 | 1212 | - | 0.435644 | |
| ycgG | conserved inner membrane protein | RecName: Full=Uncharacterized protein YcgG; | chromosome | CDS | 1218905 | 1524 | + | 0.446194 | |
| ydaM | predicted diguanylate cyclase, GGDEF domain signalling protein | RecName: Full=Probable diguanylate cyclase YdaM; Short=DGC; EC=2.7.7.65; | chromosome | CDS | 1408277 | 1233 | - | 0.476886 | |
| yddV | predicted diguanylate cyclase | RecName: Full=Diguanylate cyclase DosC; Short=DGC; EC=2.7.7.65; AltName: Full=Direct oxygen-sensing cyclase; | chromosome | CDS | 1567472 | 1044 | - | 0.431992 | |
| ydeH | conserved hypothetical protein | RecName: Full=Diguanylate cyclase YdeH; Short=DGC; EC=2.7.7.65; | chromosome | CDS | 1624674 | 891 | - | 0.448934 | |
| ydiV | conserved hypothetical protein | RecName: Full=Putative anti-FlhC(2)FlhD(4) factor YdiV; AltName: Full=c-di-GMP regulator CdgR; | chromosome | CDS | 1793021 | 714 | - | 0.422969 | |
| yeaG | conserved hypothetical protein with nucleoside triphosphate hydrolase domain | RecName: Full=Uncharacterized protein YeaG; | chromosome | CDS | 1868622 | 1935 | + | 0.501292 | |
| yeaI | predicted diguanylate cyclase | RecName: Full=Inner membrane protein YeaI; | chromosome | CDS | 1872099 | 1476 | + | 0.384824 | |
| yeaJ | predicted diguanylate cyclase | RecName: Full=Putative diguanylate cyclase YeaJ; Short=DGC; EC=2.7.7.65; | chromosome | CDS | 1873755 | 1491 | + | 0.460094 | |
| yeaP | predicted diguanylate cyclase | RecName: Full=Probable diguanylate cyclase YeaP; Short=DGC; EC=2.7.7.65; | chromosome | CDS | 1879429 | 1026 | + | 0.480507 | |
| yebR | conserved hypothetical protein | RecName: Full=Free methionine-R-sulfoxide reductase; Short=fRMsr; EC=1.8.4.14; | chromosome | CDS | 1917345 | 552 | - | 0.478261 | |
| yecG | universal stress protein | RecName: Full=Universal stress protein C; | chromosome | CDS | 1981890 | 429 | + | 0.449883 | |
| yedQ | predicted diguanylate cyclase | RecName: Full=Probable diguanylate cyclase YedQ; Short=DGC; EC=2.7.7.65; AltName: Full=Cellulose synthesis regulatory protein; | chromosome | CDS | 2028460 | 1695 | - | 0.513864 | |
| yedV | predicted sensory kinase in two-component regulatory system with YedW | RecName: Full=Probable sensor-like histidine kinase YedV; EC=2.7.13.3; | chromosome | CDS | 2038931 | 1359 | - | 0.396615 | |
| yedW | predicted DNA-binding response regulator in two-component system withYedV | RecName: Full=Probable transcriptional regulatory protein YedW; | chromosome | CDS | 2040289 | 672 | - | 0.447917 | |
| yegE | predicted diguanylate cyclase, GGDEF domain signalling protein | RecName: Full=Probable diguanylate cyclase YegE; Short=DGC; EC=2.7.7.65; | chromosome | CDS | 2145403 | 3318 | + | 0.523508 | |
| yehT | predicted response regulator in two-component system withYehU | RecName: Full=Transcriptional regulatory protein YehT; | chromosome | CDS | 2215577 | 720 | - | 0.493056 | |
| yehU | predicted sensory kinase in two-component system with YehT | RecName: Full=Sensor histidine kinase YehU; EC=2.7.13.3; | chromosome | CDS | 2216293 | 1686 | - | 0.505931 | |
| yeiL | DNA-binding transcriptional activator | RecName: Full=Regulatory protein YeiL; | chromosome | CDS | 2258689 | 660 | + | 0.45 | |
| yfeA | predicted diguanylate cyclase | RecName: Full=Uncharacterized protein YfeA; | chromosome | CDS | 2521089 | 2190 | - | 0.489954 | |
| yfgF | predicted inner membrane protein | RecName: Full=Cyclic di-GMP phosphodiesterase YfgF; EC=3.1.4.52; | chromosome | CDS | 2625351 | 2244 | - | 0.466132 | |
| yfhA | predicted DNA-binding response regulator in two-component system | RecName: Full=Transcriptional regulatory protein GlrR; | chromosome | CDS | 2686125 | 1335 | - | 0.547566 | |
| yfhK | predicted sensory kinase in two-component system | RecName: Full=Sensor histidine kinase GlrK; EC=2.7.13.3; | chromosome | CDS | 2688327 | 1428 | - | 0.531513 | |
| yfiN | predicted diguanylate cyclase | RecName: Full=Probable diguanylate cyclase YfiN; Short=DGC; EC=2.7.7.65; | chromosome | CDS | 2741039 | 1227 | + | 0.483293 | |
| yfjI | hypothetical protein | RecName: Full=Uncharacterized protein YfjI; | chromosome | CDS | 2757641 | 1410 | + | 0.379433 | |
| ygeK | predicted DNA-binding transcriptional regulator | RecName: Full=Putative uncharacterized response regulatory protein YgeK; | chromosome | CDS | 2993116 | 444 | - | 0.355856 | |
| ygeL | hypothetical protein | RecName: Full=Putative uncharacterized response regulatory protein YgeK; | chromosome | CDS | 2993593 | 156 | - | 0.365385 | |
| ygeV | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized sigma-54-dependent transcriptional regulator YgeV; | chromosome | CDS | 3002664 | 1779 | - | 0.45756 | |
| yhaC | hypothetical protein | RecName: Full=Uncharacterized protein YhaC; AltName: Full=ORF B; AltName: Full=ORFX; | chromosome | CDS | 3268270 | 1188 | + | 0.318182 | |
| yhdA | conserved inner membrane protein | RecName: Full=RNase E specificity factor CsrD; AltName: Full=Regulator of CsrB and CsrC decay CsrD; | chromosome | CDS | 3401247 | 1941 | - | 0.506955 | |
| yhdW | predicted amino-acid transporter subunit | RecName: Full=Putative amino-acid ABC transporter-binding protein YhdW; Flags: Precursor; | chromosome | CDS | 3419004 | 918 | + | 0.493464 | |
| yhjB | predicted DNA-binding response regulator in two-component regulatory system | RecName: Full=Putative HTH-type transcriptional regulator YhjB; | chromosome | CDS | 3968521 | 603 | + | 0.477612 | |
| yhjH | EAL domain containing protein involved in flagellar function | RecName: Full=Cyclic di-GMP phosphodiesterase YhjH; EC=3.1.4.52; | chromosome | CDS | 3961228 | 768 | + | 0.527344 | |
| yhjK | predicted diguanylate cyclase | RecName: Full=Protein YhjK; | chromosome | CDS | 3954836 | 1950 | + | 0.526154 | |
| yiiT | stress-induced protein | RecName: Full=Universal stress protein D; | chromosome | CDS | 3522960 | 429 | - | 0.431235 | |
| yjcC | predicted signal transduction protein | RecName: Full=Putative cyclic-di-GMP phosphodiesterase YjcC; EC=3.1.4.52; | chromosome | CDS | 4279061 | 1587 | + | 0.447385 | |
| yjfJ | predicted transcriptional regulator effector protein | RecName: Full=Uncharacterized protein YjfJ; Flags: Precursor; | chromosome | CDS | 4415233 | 699 | + | 0.513591 | |
| yjiY | predicted inner membrane protein | RecName: Full=Inner membrane protein YjiY; | chromosome | CDS | 4593809 | 2151 | - | 0.560669 | |
| yjjQ | predicted DNA-binding transcriptional regulator | RecName: Full=Putative transcription factor YjjQ; | chromosome | CDS | 4608157 | 726 | + | 0.450413 | |
| ylaB | conserved inner membrane protein | RecName: Full=Putative cyclic-di-GMP phosphodiesterase YlaB; EC=3.1.4.52; | chromosome | CDS | 476291 | 1551 | - | 0.480335 | |
| yliE | conserved inner membrane protein | RecName: Full=Putative cyclic di-GMP phosphodiesterase YliE; EC=3.1.4.52; | chromosome | CDS | 873401 | 2349 | + | 0.415922 | |
| yliF | predicted diguanylate cyclase | RecName: Full=Putative lipoprotein YliF; Flags: Precursor; | chromosome | CDS | 875757 | 1329 | + | 0.434913 | |
| ymfK | repressor protein phage e14 | RecName: Full=Putative lambdoid prophage e14 repressor protein C2; | chromosome | CDS | 1203836 | 675 | - | 0.444444 | |
| ymfL | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized protein YmfL; | chromosome | CDS | 1204833 | 570 | + | 0.494737 | |
| ynaA | predicted tail protein | RecName: Full=Putative uncharacterized protein YnaA; | chromosome | CDS | 1428168 | 1029 | + | 0.468416 | |
| yneF | predicted diguanylate cyclase | RecName: Full=Uncharacterized protein YneF; | chromosome | CDS | 1612621 | 948 | - | 0.504219 | |
| yoaD | predicted phosphodiesterase | RecName: Full=Putative cyclic-di-GMP phosphodiesterase AdrB; EC=3.1.4.52; | chromosome | CDS | 1900141 | 1599 | + | 0.505316 | |
| ypdA | predicted sensory kinase in two-component system with YpdB | RecName: Full=Sensor histidine kinase YpdA; EC=2.7.13.3; | chromosome | CDS | 2504117 | 1698 | + | 0.514134 | |
| ypdB | predicted response regulator in two-component system withYpdA | RecName: Full=Transcriptional regulatory protein YpdB; | chromosome | CDS | 2505829 | 735 | + | 0.47483 | |
| yqeH | conserved hypothetical protein with bipartite regulator domain | RecName: Full=Uncharacterized protein YqeH; | chromosome | CDS | 2986192 | 633 | + | 0.374408 | |
| yrbA | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized protein YrbA; | chromosome | CDS | 3336404 | 255 | - | 0.505882 | |
| zraP | Zn-binding periplasmic protein | RecName: Full=Zinc resistance-associated protein; Flags: Precursor; | chromosome | CDS | 3434993 | 426 | + | 0.535211 | |
| zraR | fused DNA-binding response regulator in two-component regulatory system with ZraS | RecName: Full=Transcriptional regulatory protein ZraR; | chromosome | CDS | 3432036 | 1326 | - | 0.562594 | |
| zraS | sensory histidine kinase in two-component regulatory system with ZraR | RecName: Full=Sensor protein ZraS; EC=2.7.13.3; | chromosome | CDS | 3433358 | 1398 | - | 0.542918 | |
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