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2024-04-27 17:16:11

Gene list

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COG category: Signal transduction mechanisms
Organism: Escherichia coli W3110, K-12

Number of genes found: 187

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Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
aceK isocitrate dehydrogenase kinase/phosphatasechromosome CDS4222186 1737 + 0.527922
aer fused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis componentchromosome CDS3216212 1521 - 0.547666
apaH diadenosine tetraphosphatasechromosome CDS50380 843 - 0.557533
arcA DNA-binding response regulator in two-component regulatory system with ArcB or CpxAchromosome CDS4644270 717 - 0.51046
arcB hybrid sensory histidine kinase in two-component regulatory system with ArcAchromosome CDS3350544 2337 - 0.506205
argT lysine/arginine/ornithine transporter subunitchromosome CDS2432455 783 - 0.501916
artI arginine transporter subunitchromosome CDS902679 732 - 0.502732
artJ arginine transporter subunitchromosome CDS900266 732 - 0.448087
atoC fused response regulator of ato opeon, in two-component system with AtoSchromosome CDS2326536 1386 + 0.489899
atoS sensory histidine kinase in two-component regulatory system with AtoCchromosome CDS2324713 1827 + 0.485495
baeR DNA-binding response regulator in two-component regulatory system with BaeSchromosome CDS2166413 723 + 0.540802
baeS sensory histidine kinase in two-component regulatory system with BaeRchromosome CDS2165013 1404 + 0.537037
barA hybrid sensory histidine kinase, in two-component regulatory system with UvrYchromosome CDS2913713 2757 + 0.498368
basR DNA-binding response regulator in two-component regulatory system with BasSchromosome CDS4337960 669 - 0.532138
basS sensory histidine kinase in two-component regulatory system with BasRchromosome CDS4336859 1092 - 0.542125
bglJ DNA-binding transcriptional regulatorchromosome CDS4608894 624 + 0.456731
bipA GTP-binding proteinchromosome CDS3576451 1824 - 0.534539
bolA regulator of penicillin binding proteins and beta lactamase transcription (morphogene)chromosome CDS453696 318 + 0.484277
cdaR DNA-binding transcriptional regulatorchromosome CDS182463 1158 + 0.528497
cheA fused chemotactic sensory histidine kinase (soluble) in two-component regulatory system with CheB and CheYchromosome CDS1975074 1965 - 0.531298
cheB fused chemotaxis regulator and protein-glutamate methylesterase in two-component regulatory system with CheAchromosome CDS1969166 1050 - 0.542857
cheR chemotaxis regulatorchromosome CDS1970218 861 - 0.542393
cheW purine-binding chemotaxis proteinchromosome CDS1974550 504 - 0.519841
cheY chemotaxis regulator transmitting signal to flagellar motor componentchromosome CDS1968762 390 - 0.492308
cheZ chemotaxis regulatorchromosome CDS1968107 645 - 0.534884
chpA toxin of the ChpA-ChpR toxin-antitoxin system, endoribonucleasechromosome CDS2909412 336 - 0.46131
chpB toxin of the ChpB-ChpS toxin-antitoxin systemchromosome CDS4453372 351 + 0.538462
chpR antitoxin of the ChpA-ChpR toxin-antitoxin systemchromosome CDS2909747 249 - 0.485944
chpS antitoxin of the ChpB-ChpS toxin-antitoxin systemchromosome CDS4453127 252 + 0.503968
citA sensory histidine kinase in two-component regulatory system with citBchromosome CDS651458 1659 + 0.500904
citB DNA-binding response regulator in two-component regulatory system with citAchromosome CDS653085 681 + 0.50514
cmtB predicted mannitol-specific enzyme IIA component of PTSchromosome CDS3077543 444 - 0.423423
cpxA sensory histidine kinase in two-component regulatory system with CpxRchromosome CDS3531706 1374 + 0.545852
cpxP periplasmic protein combats stresschromosome CDS3530361 501 - 0.500998
cpxR DNA-binding response regulator in two-component regulatory system with CpxAchromosome CDS3531011 699 + 0.513591
creB DNA-binding response regulator in two-component regulatory system with CreCchromosome CDS4640687 690 + 0.552174
creC sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulonchromosome CDS4641376 1425 + 0.538947
crp DNA-binding transcriptional dual regulatorchromosome CDS4153664 633 - 0.492891
csrA pleiotropic regulatory protein for carbon source metabolismchromosome CDS2817617 186 - 0.494624
cstA carbon starvation proteinchromosome CDS629117 2106 + 0.572175
cusR DNA-binding response regulator in two-component regulatory system with CusSchromosome CDS593983 684 - 0.538012
cusS sensory histidine kinase in two-component regulatory system with CusR, senses copper ionschromosome CDS592551 1443 - 0.520443
dcuR DNA-binding response regulator in two-component regulatory system with DcuSchromosome CDS4353993 720 - 0.493056
dcuS sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respirationchromosome CDS4354709 1632 - 0.499387
dksA transcriptional regulator of rRNA transcription, DnaK suppressor proteinchromosome CDS160149 456 - 0.526316
dos cAMP phosphodiesterase, heme-regulatedchromosome CDS1565048 2400 - 0.502083
envZ sensory histidine kinase in two-component regulatory system with OmpRchromosome CDS4104548 1353 + 0.570584
etp phosphotyrosine-protein phosphatasechromosome CDS1044652 447 - 0.52349
evgA DNA-binding response regulator in two-component regulatory system with EvgSchromosome CDS2489201 615 + 0.4
evgS hybrid sensory histidine kinase in two-component regulatory system with EvgAchromosome CDS2489820 3594 + 0.40818
fecR transmembrane signal transducer for ferric citrate transportchromosome CDS4521444 954 - 0.590147
fhlA DNA-binding transcriptional activatorchromosome CDS2852994 2079 + 0.525734
fimZ predicted DNA-binding transcriptional regulatorchromosome CDS563071 633 - 0.366509
fliY cystine transporter subunitchromosome CDS2001722 801 - 0.498127
fnr DNA-binding transcriptional dual regulator, global regulator of anaerobic growthchromosome CDS1400488 753 - 0.5166
frvA predicted enzyme IIA component of PTSchromosome CDS3543858 447 + 0.501119
frvR predicted regulatorchromosome CDS3546826 1749 + 0.500286
gatA galactitol-specific enzyme IIA component of PTSchromosome CDS2178069 315 - 0.447619
glnE fused deadenylyltransferase and adenylyltransferase for glutamine synthetasechromosome CDS3195457 2841 - 0.559662
glnG fused DNA-binding response regulator in two-component regulatory system with GlnL, nitrogen regulator I (NRI)chromosome CDS3581403 1410 + 0.569504
glnH glutamine transporter subunitchromosome CDS847680 747 - 0.487282
glnL sensory kinase in two-component regulatory system with GlnGchromosome CDS3580342 1050 + 0.552381
gltI glutamate and aspartate transporter subunitchromosome CDS687261 909 - 0.487349
gmr modulator of Rnase II stabilitychromosome CDS1346471 1986 - 0.484894
hisJ histidine/lysine/arginine/ornithine transporter subunitchromosome CDS2431452 783 - 0.487867
htrG predicted signal transduction proteinchromosome CDS3199863 621 + 0.52657
hyfR DNA-binding transcriptional activator, formate sensingchromosome CDS2610556 2013 + 0.52608
kdpD fused sensory histidine kinase in two-component regulatory system with KdpEchromosome CDS722152 2685 - 0.575791
kdpE DNA-binding response regulator in two-component regulatory system with KdpDchromosome CDS721478 678 - 0.566372
lexA DNA-binding transcriptional repressorchromosome CDS4260705 609 + 0.518883
luxS S-ribosylhomocysteinasechromosome CDS2812874 516 - 0.515504
narL DNA-binding response regulator in two-component regulatory system with NarX (or NarQ)chromosome CDS1276756 651 - 0.517665
narP DNA-binding response regulator in two-component regulatory system with NarQ or NarXchromosome CDS2293834 648 + 0.524691
narQ sensory histidine kinase in two-component regulatory system with NarP (NarL)chromosome CDS2584387 1701 + 0.516167
narX sensory histidine kinase in two-component regulatory system with NarLchromosome CDS1277399 1797 - 0.533667
norR DNA-binding transcriptional activatorchromosome CDS2829431 1515 - 0.568317
ompR DNA-binding response regulator in two-component regulatory system with EnvZchromosome CDS4103832 720 + 0.551389
phoB DNA-binding response regulator in two-component regulatory system with PhoR (or CreC)chromosome CDS416366 690 + 0.544928
phoH conserved hypothetical protein with nucleoside triphosphate hydrolase domainchromosome CDS1085414 1065 + 0.522066
phoP DNA-binding response regulator in two-component regulatory system with PhoQchromosome CDS1191353 672 - 0.477679
phoQ sensory histidine kinase in two-compoent regulatory system with PhoPchromosome CDS1189893 1461 - 0.513347
phoR sensory histidine kinase in two-component regulatory system with PhoBchromosome CDS417113 1296 + 0.530093
pphA serine/threonine-specific protein phosphatase 1chromosome CDS1924027 657 - 0.47793
pphB serine/threonine-specific protein phosphatase 2chromosome CDS2858416 657 + 0.423135
proQ predicted structural transport elementchromosome CDS1916550 699 - 0.529328
prpR DNA-binding transcriptional regulatorchromosome CDS346081 1587 - 0.551985
pspA regulatory protein for phage-shock-protein operonchromosome CDS1369793 669 + 0.493274
pspC transcriptional activatorchromosome CDS1370739 360 + 0.502778
pspF DNA-binding transcriptional activatorchromosome CDS1368649 978 - 0.517382
ptsN sugar-specific enzyme IIA component of PTSchromosome CDS3346433 492 + 0.522358
ptsP fused PEP-protein phosphotransferase (enzyme I) of PTS systemchromosome CDS2964844 2247 - 0.538941
qseB DNA-binding response regulator in two-component regulatory system with QseCchromosome CDS3168484 660 + 0.516667
qseC sensory histidine kinase in two-component regulatory system with QseBchromosome CDS3169140 1350 + 0.53037
rcsB DNA-binding response regulator in two-component regulatory system with RcsC and YojNchromosome CDS2319511 651 + 0.477727
rcsC hybrid sensory kinase in two-component regulatory system with RcsB and YojNchromosome CDS2320361 375 - 0.501333
rcsC hybrid sensory kinase in two-component regulatory system with RcsB and YojNchromosome CDS2322075 2424 - 0.509076
rcsD phosphotransfer intermediate protein in two-component regulatory system with RcsBCchromosome CDS2316822 2673 + 0.493827
relA (p)ppGpp synthetase I/GTP pyrophosphokinasechromosome CDS2910073 2235 - 0.537808
rfaP kinase that phosphorylates core heptose of lipopolysaccharidechromosome CDS3834465 798 + 0.433584
rfaZ lipopolysaccharide core biosynthesis proteinchromosome CDS3840219 852 + 0.325117
rseA anti-sigma factorchromosome CDS2707410 651 - 0.522273
rseB anti-sigma factorchromosome CDS2706454 957 - 0.507837
rseC RseC protein involved in reduction of the SoxR iron-sulfur clusterchromosome CDS2705978 480 - 0.547917
rssB response regulator of RpoSchromosome CDS1291819 1014 + 0.486193
rstA DNA-bindng response regulator in two-component regulatory system with RstBchromosome CDS1683864 729 + 0.491084
rstB sensory histidine kinase in two-component regulatory system with RstAchromosome CDS1684596 1302 + 0.506912
rtcR sigma 54-dependent transcriptional regulator of rtcBA expressionchromosome CDS4080550 1599 - 0.557849
rtn conserved hypothetical proteinchromosome CDS2274060 1557 + 0.505459
sgcA predicted phosphotransferase enzyme IIA componentchromosome CDS4532229 432 - 0.543981
sixA phosphohistidine phosphatasechromosome CDS2461773 486 - 0.532922
spoT bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolasechromosome CDS3815907 2109 - 0.537221
spy envelope stress induced periplasmic proteinchromosome CDS1826854 486 - 0.50823
tap methyl-accepting protein IVchromosome CDS1971097 1602 - 0.535581
tar methyl-accepting chemotaxis protein IIchromosome CDS1972744 1662 - 0.527677
torR DNA-binding response regulator in two-component regulatory system with TorSchromosome CDS1057684 693 - 0.52381
torS hybrid sensory histidine kinase in two-component regulatory system with TorRchromosome CDS1053856 2745 - 0.537705
trg methyl-accepting chemotaxis protein III, ribose and galactose sensor receptorchromosome CDS1494184 1641 + 0.512492
tsr methyl-accepting chemotaxis protein I, serine sensor receptorchromosome CDS4596337 1656 + 0.546498
uhpA DNA-binding response regulator in two-component regulatory system wtih UhpBchromosome CDS3789689 591 + 0.588832
uhpB sensory histidine kinase in two-component regulatory sytem with UhpAchromosome CDS3790279 1503 + 0.570858
ulaC L-ascorbate-specific enzyme IIA component of PTSchromosome CDS4426388 465 + 0.539785
umuD DNA polymerase V, subunit Dchromosome CDS1232344 420 + 0.480952
uspA universal stress global response regulatorchromosome CDS3999870 435 - 0.491954
uspE stress-induced proteinchromosome CDS1399386 951 - 0.505783
uspF stress-induced protein, ATP-binding proteinchromosome CDS1436899 435 - 0.485057
uspG universal stress protein UP12chromosome CDS640662 429 - 0.498834
uvrY DNA-binding response regulator in two-component regulatory system with BarAchromosome CDS1996840 657 - 0.497717
wzb protein-tyrosine phosphatasechromosome CDS2137792 444 - 0.545045
yahA predicted DNA-binding transcriptional regulatorchromosome CDS331595 1089 + 0.459137
yaiC predicted diguanylate cyclasechromosome CDS402927 1116 + 0.536738
ybeZ hypothetical protein with nucleoside triphosphate hydrolase domainchromosome CDS692760 1080 - 0.542593
ybiI conserved hypothetical proteinchromosome CDS838612 267 - 0.520599
ycdT predicted diguanylate cyclasechromosome CDS1093298 1359 + 0.384842
ycgF predicted FAD-binding phosphodiesterasechromosome CDS1215841 1212 - 0.435644
ycgG conserved inner membrane proteinchromosome CDS1218905 1524 + 0.446194
ydaM predicted diguanylate cyclase, GGDEF domain signalling proteinchromosome CDS1408277 1233 - 0.476886
yddV predicted diguanylate cyclasechromosome CDS1567472 1044 - 0.431992
ydeH conserved hypothetical proteinchromosome CDS1624674 891 - 0.448934
ydiV conserved hypothetical proteinchromosome CDS1793021 714 - 0.422969
yeaG conserved hypothetical protein with nucleoside triphosphate hydrolase domainchromosome CDS1868622 1935 + 0.501292
yeaI predicted diguanylate cyclasechromosome CDS1872099 1476 + 0.384824
yeaJ predicted diguanylate cyclasechromosome CDS1873755 1491 + 0.460094
yeaP predicted diguanylate cyclasechromosome CDS1879429 1026 + 0.480507
yebR conserved hypothetical proteinchromosome CDS1917345 552 - 0.478261
yecG universal stress proteinchromosome CDS1981890 429 + 0.449883
yedQ predicted diguanylate cyclasechromosome CDS2028460 1695 - 0.513864
yedV predicted sensory kinase in two-component regulatory system with YedWchromosome CDS2038931 1359 - 0.396615
yedW predicted DNA-binding response regulator in two-component system withYedVchromosome CDS2040289 672 - 0.447917
yegE predicted diguanylate cyclase, GGDEF domain signalling proteinchromosome CDS2145403 3318 + 0.523508
yehT predicted response regulator in two-component system withYehUchromosome CDS2215577 720 - 0.493056
yehU predicted sensory kinase in two-component system with YehTchromosome CDS2216293 1686 - 0.505931
yeiL DNA-binding transcriptional activatorchromosome CDS2258689 660 + 0.45
yfeA predicted diguanylate cyclasechromosome CDS2521089 2190 - 0.489954
yfgF predicted inner membrane proteinchromosome CDS2625351 2244 - 0.466132
yfhA predicted DNA-binding response regulator in two-component systemchromosome CDS2686125 1335 - 0.547566
yfhK predicted sensory kinase in two-component systemchromosome CDS2688327 1428 - 0.531513
yfiN predicted diguanylate cyclasechromosome CDS2741039 1227 + 0.483293
yfjI hypothetical proteinchromosome CDS2757641 1410 + 0.379433
ygeK predicted DNA-binding transcriptional regulatorchromosome CDS2993116 444 - 0.355856
ygeL hypothetical proteinchromosome CDS2993593 156 - 0.365385
ygeV predicted DNA-binding transcriptional regulatorchromosome CDS3002664 1779 - 0.45756
yhaC hypothetical proteinchromosome CDS3268270 1188 + 0.318182
yhdA conserved inner membrane proteinchromosome CDS3401247 1941 - 0.506955
yhdW predicted amino-acid transporter subunitchromosome CDS3419004 918 + 0.493464
yhjB predicted DNA-binding response regulator in two-component regulatory systemchromosome CDS3968521 603 + 0.477612
yhjH EAL domain containing protein involved in flagellar functionchromosome CDS3961228 768 + 0.527344
yhjK predicted diguanylate cyclasechromosome CDS3954836 1950 + 0.526154
yiiT stress-induced proteinchromosome CDS3522960 429 - 0.431235
yjcC predicted signal transduction proteinchromosome CDS4279061 1587 + 0.447385
yjfJ predicted transcriptional regulator effector proteinchromosome CDS4415233 699 + 0.513591
yjiY predicted inner membrane proteinchromosome CDS4593809 2151 - 0.560669
yjjQ predicted DNA-binding transcriptional regulatorchromosome CDS4608157 726 + 0.450413
ylaB conserved inner membrane proteinchromosome CDS476291 1551 - 0.480335
yliE conserved inner membrane proteinchromosome CDS873401 2349 + 0.415922
yliF predicted diguanylate cyclasechromosome CDS875757 1329 + 0.434913
ymfK repressor protein phage e14chromosome CDS1203836 675 - 0.444444
ymfL predicted DNA-binding transcriptional regulatorchromosome CDS1204833 570 + 0.494737
ynaA predicted tail proteinchromosome CDS1428168 1029 + 0.468416
yneF predicted diguanylate cyclasechromosome CDS1612621 948 - 0.504219
yoaD predicted phosphodiesterasechromosome CDS1900141 1599 + 0.505316
ypdA predicted sensory kinase in two-component system with YpdBchromosome CDS2504117 1698 + 0.514134
ypdB predicted response regulator in two-component system withYpdAchromosome CDS2505829 735 + 0.47483
yqeH conserved hypothetical protein with bipartite regulator domainchromosome CDS2986192 633 + 0.374408
yrbA predicted DNA-binding transcriptional regulatorchromosome CDS3336404 255 - 0.505882
zraP Zn-binding periplasmic proteinchromosome CDS3434993 426 + 0.535211
zraR fused DNA-binding response regulator in two-component regulatory system with ZraSchromosome CDS3432036 1326 - 0.562594
zraS sensory histidine kinase in two-component regulatory system with ZraRchromosome CDS3433358 1398 - 0.542918