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2024-05-03 18:30:37

Gene list

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COG category: Signal transduction mechanisms
Organism: Shigella flexneri 2a str. 2457T, 2457T

Number of genes found: 133

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA S3755 hypothetical proteinchromosome CDS3651915 369 - 0.479675
NA S1641 hypothetical proteinchromosome CDS1593363 714 + 0.42577
NA S2553 hypothetical proteinchromosome CDS2444747 486 - 0.528807
NA S4836 hypothetical proteinchromosome CDS4171175 762 - 0.372703
NA S2585 putative 2-component transcriptional regulatorchromosome CDS2481362 735 + 0.47483
NA S1509 hypothetical proteinchromosome CDS1470319 498 + 0.497992
NA S0827 hypothetical proteinchromosome CDS815650 1329 + 0.433409
NA S1528 hypothetical proteinchromosome CDS1487193 1599 - 0.500938
NA S1698 hypothetical proteinchromosome CDS1642592 948 + 0.504219
NA S1241 hypothetical proteinchromosome CDS1201348 1524 + 0.450787
NA S2710 hypothetical arsenate reductasechromosome CDS2604133 507 + 0.605523
apaH S0048 diadenosine tetraphosphatasechromosome CDS49184 843 - 0.559905
arcA S4704 negative response regulator of genes in aerobic pathways (sensors, ArcB and CpxA)chromosome CDS4597292 717 - 0.51046
arcB S3468 histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcAchromosome CDS3333973 2337 - 0.506205
argT S2521 lysine-, arginine-, ornithine-binding periplasmic proteinchromosome CDS2414578 783 - 0.498084
artI S0859 arginine 3rd transport system periplasmic binding proteinchromosome CDS843808 732 - 0.489071
artJ S0856 arginine 3rd transport system periplasmic binding proteinchromosome CDS841394 732 - 0.456284
baeR S2269 transcriptional response regulatory protein (sensor BaeS)chromosome CDS2153920 723 + 0.538036
baeS S2268 sensor protein for BaeRchromosome CDS2152520 1404 + 0.547721
barA S2993 sensor-regulatorchromosome CDS2868747 2757 + 0.498731
basR S3620 transcriptional regulatory protein,chromosome CDS3496896 669 - 0.532138
basS S3619 sensor protein for BasRchromosome CDS3495795 1101 - 0.543143
bglJ S4669 2-component transcriptional regulatorchromosome CDS4563323 528 + 0.464015
bolA S0386 possible regulator of murein geneschromosome CDS389339 351 + 0.481481
cheA S2028 chemotaxis protein CheAchromosome CDS1948644 1965 - 0.531807
cheB S2023 response regulator for chemotaxis (cheA sensor); protein methylesterasechromosome CDS1942736 1050 - 0.537143
cheR S2024 response regulator for chemotaxis; protein glutamate methyltransferasechromosome CDS1943788 861 - 0.538908
cheW S2027 positive regulator of CheA protein activitychromosome CDS1948120 504 - 0.515873
cheY S2022 chemotaxis protein CheYchromosome CDS1942332 390 - 0.489744
cheZ S2021 chemotaxis protein CheZchromosome CDS1941677 645 - 0.533333
cpxA S3758 probable sensor protein (histidine protein kinase)chromosome CDS3653260 1374 + 0.545124
cpxR S3757 transcriptional regulator in 2-component systemchromosome CDS3652565 699 + 0.51216
creB S4701 catabolic regulation response regulatorchromosome CDS4593710 690 + 0.549275
creC S4702 catabolite repression sensor kinase for PhoB, alternative sensor for pho regulonchromosome CDS4594399 1425 + 0.538947
crp S4387 cyclic AMP receptor proteinchromosome CDS4316742 633 - 0.49763
csrA S2910 carbon storage regulatorchromosome CDS2787095 186 - 0.494624
cstA S0518 carbon starvation proteinchromosome CDS529149 2106 + 0.57075
dksA S0140 dnaK suppressor proteinchromosome CDS151418 456 - 0.526316
envZ S4340 protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompCchromosome CDS4267522 1353 + 0.569845
evgA S2573 putative positive transcription regulator (sensor EvgS)chromosome CDS2464957 615 + 0.406504
evgS S2574 putative sensor for regulator EvgAchromosome CDS2465576 3594 + 0.407346
fhlA S2940 formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operonschromosome CDS2817298 2079 + 0.525253
fnr S1434 global transcription regulator Fnrchromosome CDS1399664 753 - 0.508632
frvA S3771 PTS system, fructose-specific IIA componentchromosome CDS3666539 447 + 0.503356
gatA S2282 galactitol-specific enzyme IIA of phosphotransferase systemchromosome CDS2163137 453 - 0.421634
glnE S3299 adenylylating enzyme for glutamine synthetasechromosome CDS3174589 2841 - 0.552974
glnG S3808 sensor glnL response regulator (nitrogen regulator I, NRI)chromosome CDS3705253 1410 + 0.564539
glnH S0804 periplasmic glutamine-binding protein; permeasechromosome CDS787477 747 - 0.485944
glnL S3807 histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII)chromosome CDS3704192 1050 + 0.544762
hisJ S2520 histidine-binding periplasmic protein of high-affinity histidine transport systemchromosome CDS2413575 783 - 0.49553
hnr S1321 Hnr proteinchromosome CDS1285174 1014 + 0.487179
hydG S3659 response regulator of hydrogenase 3 activity (sensor HydH)chromosome CDS3549614 1326 - 0.567873
hydH S3660 sensor kinase for HydG, hydrogenase 3 activitychromosome CDS3550936 1377 - 0.542484
lexA S3569 regulator for SOS(lexA) regulonchromosome CDS3438963 609 + 0.52381
narL S1308 nitrate/nitrite response regulator protein NarLchromosome CDS1270706 651 - 0.516129
narP S2407 nitrate/nitrite response regulator (sensor NarQ)chromosome CDS2291958 648 + 0.523148
narX S1309 nitrate/nitrite sensor protein NarXchromosome CDS1271349 1797 - 0.534224
nrfB S3598 formate-dependent nitrite reductasechromosome CDS3472020 567 + 0.536155
ompR S4339 response regulator (sensor, EnvZ)chromosome CDS4266806 720 + 0.547222
phoB S0344 positive response regulator for pho regulonchromosome CDS345784 690 + 0.53913
phoP S1232 transcriptional regulatory proteinchromosome CDS1193853 672 - 0.480655
phoQ S1231 sensor protein PhoQchromosome CDS1192393 1461 - 0.514031
phoR S0345 positive and negative sensor protein for pho regulonchromosome CDS346531 1296 + 0.532407
pspA S1391 phage shock protein, inner membrane proteinchromosome CDS1362091 669 + 0.491779
pspC S1393 putative regulator of phage shock responsechromosome CDS1363037 360 + 0.502778
pspF S1390 psp operon transcriptional activatorchromosome CDS1360947 993 - 0.521652
ptsN S3462 phosphotransferase system enzyme IIAchromosome CDS3329864 492 + 0.518293
ptsP S3037 PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins)chromosome CDS2921231 2247 - 0.538051
ptxA S4620 putative PTS system enzyme II A componentchromosome CDS4518146 465 + 0.552688
rcsA S2090 positive regulator for ctr capsule biosynthesis, positive transcription factorchromosome CDS2000515 624 + 0.383013
rcsB S2432 positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)chromosome CDS2317037 651 + 0.477727
rcsC S2433 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsBchromosome CDS2317887 2850 - 0.509123
relA S2991 (p)ppGpp synthetase I (GTP pyrophosphokinase)chromosome CDS2865107 2235 - 0.53736
rseA S2807 sigma-E factor regulatory protein RseAchromosome CDS2699413 651 - 0.519201
rseB S2806 sigma-E factor regulatory protein RseBchromosome CDS2698457 957 - 0.507837
rseC S2805 sigma-E factorchromosome CDS2697981 480 - 0.558333
rstA S1761 response transcriptional regulatory protein (RstB sensor)chromosome CDS1696434 744 + 0.485215
rstB S1763 sensor histidine protein kinase, RstA regulatorchromosome CDS1698900 1302 + 0.503072
rtcR S4320 putative 2-component regulatorchromosome CDS4241588 1599 - 0.553471
rtn S2392 hypothetical proteinchromosome CDS2273382 1557 + 0.500963
spoT S4079 (p)ppGpp synthetase II and guanosine-3,5-bis pyrophosphate 3-pyrophosphohydrolasechromosome CDS3980433 2109 - 0.537696
spy S1600 periplasmic proteinchromosome CDS1558202 486 + 0.50823
tap S2025 methyl-accepting chemotaxis protein IV, peptide sensor receptorchromosome CDS1944667 1602 - 0.538702
tar S2026 methyl-accepting chemotaxis protein II, aspartate sensor receptorchromosome CDS1946314 1662 - 0.527076
torR S1065 TorCAD response regulatorchromosome CDS1049126 693 - 0.526696
trg S1485 methyl-accepting chemotaxis protein III, ribose sensor receptorchromosome CDS1446880 1641 + 0.508836
tsr S4656 methyl-accepting chemotaxis protein I, serine sensor receptorchromosome CDS4550098 1665 + 0.53994
uhpA S3976 response regulatorchromosome CDS3872000 591 - 0.590525
uhpB S3975 sensor histidine protein kinase, phosphorylates UhpAchromosome CDS3870498 1503 - 0.569528
umuD S1260 mutagenesis and repair proteinchromosome CDS1217359 420 + 0.478571
uspA S4242 universal stress proteinchromosome CDS4157618 435 - 0.485057
uvrY S2053 putative 2-component transcriptional regulatorchromosome CDS1967641 657 - 0.490107
waaP S4101 lipopolysaccharide core biosynthesis proteinchromosome CDS3999755 807 + 0.478315
waaY S4103 putative LPS biosynthesis proteinchromosome CDS4001637 708 + 0.305085
wzb S2249 probable protein-tyrosine-phosphatasechromosome CDS2123880 444 - 0.538288
yaiC S0329 hypothetical proteinchromosome CDS332080 1116 + 0.536738
ybcZ S0479 putative 2-component sensor proteinchromosome CDS487035 1443 - 0.519058
ybdQ S0531 hypothetical proteinchromosome CDS543178 429 - 0.501166
ybeJ S0648 putative periplasmic binding transport proteinchromosome CDS659005 909 + 0.487349
ybeZ S0644 putative ATP-binding protein in pho regulonchromosome CDS654535 1080 + 0.539815
ybiI S0794 hypothetical proteinchromosome CDS776972 267 - 0.509363
yccY S1051 putative phosphatasechromosome CDS1036098 459 - 0.51634
ydaA S1433 hypothetical proteinchromosome CDS1398562 951 - 0.505783
yeaG S1555 hypothetical proteinchromosome CDS1512927 1380 - 0.503623
yeaP S1545 hypothetical proteinchromosome CDS1505400 1026 - 0.478557
yebJ S1510 hypothetical proteinchromosome CDS1471492 120 + 0.525
yedV S2112 putative 2-component sensor proteinchromosome CDS2015585 1359 - 0.394408
yedW S2113 putative 2-component transcriptional regulatorchromosome CDS2016943 672 - 0.446429
yehT S2324 hypothetical proteinchromosome CDS2203991 720 - 0.490278
yehU S2325 putative 2-component sensor proteinchromosome CDS2204707 1686 - 0.507711
yeiL S2377 putative transcriptional regulatorchromosome CDS2257238 579 + 0.435233
yfhA S2773 putative 2-component transcriptional regulatorchromosome CDS2665927 1335 - 0.543071
yfhK S2775 putative 2-component sensor proteinchromosome CDS2668129 1491 - 0.52381
ygaA S2923 putative 2-component transcriptional regulatorchromosome CDS2799083 1590 - 0.556604
ygaG S2901 hypothetical proteinchromosome CDS2782751 516 - 0.515504
ygiM S3301 hypothetical proteinchromosome CDS3178995 621 + 0.523349
ygiX S3270 putative 2-component transcriptional regulatorchromosome CDS3151702 660 + 0.513636
ygiY S3271 putative 2-component sensor proteinchromosome CDS3152358 1275 + 0.52549
yhdA S3507 hypothetical proteinchromosome CDS3379046 1941 - 0.504894
yhdW S3521 putative periplasmic binding transport proteinchromosome CDS3391510 918 + 0.489107
yhjB S4215 putative regulatorchromosome CDS4131438 603 + 0.47927
yhjH S4210 hypothetical proteinchromosome CDS4124145 768 + 0.528646
yhjK S4206 hypothetical proteinchromosome CDS4117746 1950 + 0.524103
yihK S3805 putative GTP-binding factorchromosome CDS3700414 1824 - 0.53125
yiiT S3746 putative regulatorchromosome CDS3644515 429 - 0.431235
yjaI S3661 hypothetical proteinchromosome CDS3552409 567 + 0.516755
yjdG S3631 putative 2-component transcriptional regulatorchromosome CDS3512930 720 - 0.501389
yjdH S3632 putative 2-component sensor proteinchromosome CDS3513646 1632 - 0.501838
yjiY S4642 putative carbon starvation proteinchromosome CDS4535482 2166 - 0.562789
ylaB S0409 hypothetical proteinchromosome CDS413399 1551 - 0.477112
ylcA S0480 putative 2-component transcriptional regulatorchromosome CDS488467 684 - 0.54386
ynaF S1449 putative filament proteinchromosome CDS1413141 507 - 0.473373
yojN S2431 putative 2-component sensor proteinchromosome CDS2314348 2673 + 0.491957