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2024-04-30 04:39:48

Gene list

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COG category: Signal transduction mechanisms
Organism: Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720

Number of genes found: 181

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Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
STM0029 putative transcription regulatorchromosome CDS32545 450 - 0.371111
STM0052 putative transcription regulator sensor for citratechromosome CDS61106 687 - 0.486172
STM0053 putative transcription regulatorchromosome CDS61794 1620 - 0.480247
STM0082 putative secreted proteinchromosome CDS94771 291 - 0.463918
STM0307 homology to Shigella VirG proteinchromosome CDS350943 408 - 0.470588
STM0343 putative diguanylate cyclase/phosphodiesterase domain 1chromosome CDS387109 1575 + 0.484444
STM0551 putative diguanylate cyclase/phosphodiesterase domain 0chromosome CDS612233 312 - 0.426282
STM0561 sensor proteinchromosome CDS618590 330 - 0.493939
STM0571 putative inner membrane proteinchromosome CDS629330 2730 + 0.516117
STM0652 putative sigma-54 dependent transcriptional regulatorchromosome CDS714545 1929 + 0.500778
STM1616 putative sugar specific PTS enzyme IIchromosome CDS1705470 438 + 0.570776
STM1633 putative periplasmic binding proteinchromosome CDS1723891 762 + 0.396325
STM1657 putative methyl-accepting chemotaxis proteinchromosome CDS1751277 1155 - 0.489177
STM1697 putative diguanylate cyclase/phosphodiesterase domain 2chromosome CDS1789095 597 - 0.482412
STM1827 putative diguanylate cyclase/phosphodiesterasechromosome CDS1924779 1704 + 0.533451
STM1987 putative inner membrane proteinchromosome CDS2069743 1713 - 0.533567
STM2230 putative peptidasechromosome CDS2330961 504 - 0.511905
STM2314 putative chemotaxis signal transduction proteinchromosome CDS2420643 1002 + 0.520958
STM2344 putative phosphotransferase systemchromosome CDS2456687 444 - 0.497748
STM2361 putative regulatory proteinchromosome CDS2472873 1428 + 0.521008
STM2503 putative diguanylate cyclasechromosome CDS2618585 2214 - 0.476965
STM2714 Fels-2 prophage proteinchromosome CDS2859028 429 - 0.608392
STM2721 Fels-2 prophage proteinchromosome CDS2863059 834 - 0.582734
STM2731 Fels-2 prophage proteinchromosome CDS2873542 228 - 0.578947
STM3138 putative methyl-accepting chemotaxis proteinchromosome CDS3300619 1059 - 0.430595
STM3152 putative methyl-accepting chemotaxis proteinchromosome CDS3314324 1644 - 0.571776
STM3216 putative methyl-accepting chemotaxis proteinchromosome CDS3380802 1566 - 0.505109
STM3258 galactitol-specific enzyme IIA of phosphotransferase systemchromosome CDS3428115 465 + 0.541936
STM3388 putative membrane domain protein involved in signal transductionchromosome CDS3557926 2100 + 0.541905
STM3773 putative NtrC family transcriptional regulatorchromosome CDS3972549 2799 - 0.549125
STM3784 putative phosphotransferase system mannitol/fructose-specific IIA domain containing proteinchromosome CDS3983948 474 - 0.440928
STM4351 putative arginine-binding periplasmic proteinchromosome CDS4595404 741 - 0.491228
STM4534 putative NtrC family transcriptional regulator, ATPase domainchromosome CDS4792067 2766 + 0.547722
STM4551 putative diguanylate cyclase/phosphodiesterase domain 1 containing proteinchromosome CDS4809046 1065 - 0.495775
STM4596 putative inner membrane proteinchromosome CDS4853733 672 - 0.427083
aceK isocitrate dehydrogenase kinase/phosphatasechromosome CDS4405078 1752 + 0.526827
aer aerotaxis sensor receptorchromosome CDS3382755 1521 - 0.551611
apaH diadenosine tetraphosphatasechromosome CDS101424 849 - 0.563015
arcA response regulator (OmpR family) in two-component regulatory system with ArcB (or CpxA)chromosome CDS4855370 717 - 0.524407
arcB sensory histidine kinase in two-component regulatory system with ArcAchromosome CDS3490492 2337 - 0.519469
argT lysine/arginine/ornithine transport proteinchromosome CDS2465511 783 - 0.505747
artI arginine transport systemchromosome CDS960294 732 - 0.51776
artJ arginine 3rd transport systemchromosome CDS957935 732 - 0.486339
baeR response regulator in two-component regulatory system with BaeSchromosome CDS2224537 723 + 0.538036
baeS sensory kinase in two-component regulatoyr system wtih BaeRchromosome CDS2223137 1404 + 0.566239
barA sensory histidine kinasechromosome CDS3106519 2757 + 0.526659
basR response regulator in two-component regulatory system with BasSchromosome CDS4533719 669 - 0.539611
basS sensory kinase in two-component regulatory system with BasRchromosome CDS4532639 1071 - 0.546219
bglJ transcriptional regulator (activator) of bgl operonchromosome CDS4806803 675 + 0.49037
bolA morphogene; putative regulator of murein genes (BolA family)chromosome CDS501001 318 + 0.490566
cdaR putative inner membrane proteinchromosome CDS246072 1158 + 0.556995
cheA sensory histitine protein kinasechromosome CDS2017178 2016 - 0.553075
cheB methyl esterasechromosome CDS2012690 1050 - 0.558095
cheM methyl accepting chemotaxis protein IIchromosome CDS2014756 1662 - 0.555355
cheR glutamate methyltransferasechromosome CDS2013736 867 - 0.527105
cheW purine-binding chemotaxis proteinchromosome CDS2016654 504 - 0.531746
cheY chemotaxis regulator proteinchromosome CDS2012283 390 - 0.515385
cheZ chemotactic response proteinchromosome CDS2011628 645 - 0.573643
copR Copper resistance transcriptional regulatory proteinchromosome CDS1183637 747 - 0.500669
copS Copper resistance; histidine kinasechromosome CDS1182280 1365 - 0.515018
cpxA sensory kinase in two-component regulatory system with CpxRchromosome CDS4268376 1374 - 0.573508
cpxP periplasmic repressor of cpx regulon by interaction with CpxAchromosome CDS4270595 501 + 0.506986
cpxR response reguator in two-component regulatory system with CpxAchromosome CDS4269746 699 - 0.546495
creB response regulator in two-component regulatory system with CreCchromosome CDS4844233 690 + 0.581159
creC sensory kinase (alternative) in two-component regulatory system with CreB (or alternatively PhoB)chromosome CDS4844922 1425 + 0.582456
crp catabolite activator protein (CAP)chromosome CDS3615645 633 + 0.50237
csrA carbon storage regulatorchromosome CDS2970951 186 - 0.510753
cstA carbon starvation proteinchromosome CDS661274 2106 + 0.569326
dcuR response regulator in two-component regulatory system with DcuSchromosome CDS4549177 720 - 0.4875
dcuS sensory histidine kinase in two-component retgulatory system with DcuRchromosome CDS4549893 1632 - 0.534926
dksA dnaK suppressor proteinchromosome CDS216398 456 - 0.537281
dpiA response regulator in two-component regulatory system with DpiBchromosome CDS689657 681 + 0.537445
dpiB sensory histidine kinase in two-component regulatory system with DpiAchromosome CDS688027 1662 + 0.518652
ecnR putative luxR family bacterial regulatory proteinchromosome CDS4580656 588 - 0.465986
envZ sensory histidine kinase in two-component regulatory system with OmpRchromosome CDS3658257 1353 - 0.57354
fimZ fimbrial protein Zchromosome CDS610256 633 - 0.410742
fliY putative periplasmic binding transport proteinchromosome CDS2043190 801 - 0.516854
fnr transcriptional regulatorchromosome CDS1754332 795 + 0.498113
glnE adenylyl transferase for glutamine synthetasechromosome CDS3364040 2844 - 0.571027
glnG EBP family response regulator in two-component regulatory system with GlnLchromosome CDS4212857 1410 - 0.567376
glnH glutamine high-affinity transporterchromosome CDS896264 747 - 0.488621
glnL sensory kinase (phosphatase) in two-component regulatory system with GlnG (nitrogen regulator II, NRII)chromosome CDS4214275 1050 - 0.569524
gltI glutamate/aspartate transporterchromosome CDS728909 927 - 0.511327
hisJ histidine transport proteinchromosome CDS2464491 783 - 0.521073
hnr Response regulator in protein turnoverchromosome CDS1848939 1014 - 0.510848
hydG response regulator in two-component reguatory system with HydHchromosome CDS4389839 1326 + 0.555807
hydH sensory kinase in two component regulatory system with HydGchromosome CDS4388436 1398 + 0.547926
kdpD sensory kinase in two-component regulatory system wtih KdpEchromosome CDS767013 2685 - 0.588827
kdpE response regulator in two-component regulatory system with KdpDchromosome CDS766339 678 - 0.563422
lexA SOS response regulatorchromosome CDS4459249 609 + 0.550082
luxS quorum sensing proteinchromosome CDS2966270 516 - 0.534884
narL response regulator in two-component regulatory system with NarX (or NarQ)chromosome CDS1866071 651 + 0.537634
narP response regulator in two-component regulatory system with NarQ (or NarX)chromosome CDS2346702 648 + 0.526235
narQ sensory histidine kinase in two-component regulatory system with NarP ( NarL)chromosome CDS2591762 1701 + 0.540858
narX sensory histidine kinase in two component regulatory system with NarLchromosome CDS1864282 1797 + 0.540345
ompR response regulator in two-component regulatory system with EnvZchromosome CDS3659606 720 - 0.556944
pgtA activator proteinchromosome CDS2507261 1248 - 0.518429
pgtB protein for signal transmissionchromosome CDS2508498 2007 - 0.538615
phoB response regulator in two-component regulatory system with PhoR (or CreC)chromosome CDS450795 690 + 0.546377
phoH PhoB-dependent ATP-binding pho regulon componentchromosome CDS1214315 855 + 0.507602
phoL putative phosphate starvation-inducible protein, ATP-bindingchromosome CDS733236 1086 - 0.537753
phoP response regulator in two-component regulatory system with PhoQchromosome CDS1318689 675 - 0.517037
phoQ sensory kinase protein in two-component regulatory system with PhoPchromosome CDS1317226 1464 - 0.515027
phoR sensory kinase in two-component regulatory system with PhoB, regulates pho regulonchromosome CDS451554 1296 + 0.537809
pphB serine/threonine specific protein phosphatase 2chromosome CDS3048771 657 + 0.415525
proQ activator of proPchromosome CDS1943202 687 - 0.537118
prpA serine/threonine protein phosphatasechromosome CDS1950689 651 - 0.525346
prpR regulator for prp operon (EBP family)chromosome CDS416087 1626 - 0.557196
pspA phage shock proteinchromosome CDS1781747 669 - 0.515695
pspC phage shock proteinchromosome CDS1781104 360 - 0.522222
pspF transcription activatorchromosome CDS1782586 981 + 0.543323
ptsN sugar specific PTS family enzyme IIAchromosome CDS3486271 492 + 0.53252
ptsP general PTS system enzyme I, transcriptional regulator with NPR and NTR proteinschromosome CDS3159909 2247 - 0.571429
ptxA putative PTS enzyme IIsga subunitchromosome CDS4626961 465 + 0.548387
rcsA positive transcriptional regulator of capsular/exo-polysaccharide synthesis (LuxR/UhpA family)chromosome CDS2067427 624 + 0.387821
rcsB LuxR/UhpA family response regulator in two-component regulatory system with RcsCchromosome CDS2369994 651 + 0.490015
rcsC sensory histidine kinase in two-component regulatory system with RcsBchromosome CDS2370747 2847 - 0.534247
relA (p)ppGpp synthetase Ichromosome CDS3102880 2235 - 0.555705
rseA anti sigma E (sigma 24) factor, negative regulatorchromosome CDS2778746 651 - 0.542243
rseB anti sigma E (sigma 24) factor, negative regulatorchromosome CDS2777790 957 - 0.551724
rseC regulator of sigma E (sigma 24) factorchromosome CDS2777314 480 - 0.58125
rstA response regulator in two-component regulatory system with RstB (OmpR family)chromosome CDS1551289 732 - 0.531421
rstB sensory histidine kinase in two-component regulatory system with RstAchromosome CDS1546405 1302 - 0.541475
rtcR sigma N (sigma 54)-dependent regulator of rtcBA expressionchromosome CDS3684868 1584 + 0.601641
rtn putative membrane protein involved in resistance to lambda and N4 phageschromosome CDS2314556 1557 + 0.518947
sipB cell invasion proteinchromosome CDS3029114 1782 - 0.523008
sixA phosphohistidine phosphatasechromosome CDS2497411 486 - 0.549383
spoT (p)ppGpp synthetase IIchromosome CDS3934070 2112 + 0.537405
sptP protein tyrosine phosphatechromosome CDS3022071 1632 - 0.441176
spy periplasmic protein related to spheroblast formationchromosome CDS1388557 486 + 0.5
sseB secretion system effectorchromosome CDS1483934 591 + 0.433164
ssrA secretion system regulator: Sensor componentchromosome CDS1476836 2763 - 0.4249
ssrB secretion system regulator: transcriptonal activatorchromosome CDS1476167 639 - 0.395931
tcp methyl-accepting transmembrane citrate/phenol chemoreceptorchromosome CDS3744842 1644 + 0.556569
tctD tricarboxylic transport regulatory proteinchromosome CDS2933761 675 - 0.54963
tctE tricarboxylic transport regulatory proteinchromosome CDS2932359 1416 - 0.561441
torR response regulator in multi-component regualtory system wtih TorS (sensory kinase) and TorT (periplasmic sensor)chromosome CDS4024667 693 + 0.558442
torS sensory kinase in multi-component regulatory system with TorR (regulator) and TorT (periplasmic sensor)chromosome CDS4026452 2736 + 0.540936
trg methyl-accepting chemotaxis protein IIIchromosome CDS1715879 1626 - 0.541205
tsr methyl-accepting chemotaxis protein Ichromosome CDS4790082 1662 + 0.551745
ttrR tetrathionate reductase complex: response regulatorchromosome CDS1473102 621 + 0.550725
ttrS tetrathionate reductase complex: sensory transduction histidine kinasechromosome CDS1471349 1779 + 0.567735
typA GTP-binding elongation factor family proteinchromosome CDS4217384 1824 + 0.536732
uhpA response regulator (repressor) in two-component regulatory system wtih UhpBchromosome CDS3990554 591 - 0.58714
uhpB sensory histidine kinase in two-component regulatory sytem with UhpAchromosome CDS3989052 1503 - 0.615436
umuD error-prone repair: SOS-response transcriptional repressorchromosome CDS2081163 420 - 0.502381
uspA universal stress protein Achromosome CDS3760855 435 + 0.512644
uvrY putative LuxR/UhpA family response regulatorchromosome CDS2038247 657 - 0.51446
wzb putative protein-tyrosine-phosphatasechromosome CDS2201056 450 - 0.571111
yaiC putative diguanylate cyclase/phosphodiesterase domain 1chromosome CDS438129 1113 + 0.554358
ybdQ putative universal stress protein UspA and related nucleotide-binding proteinchromosome CDS677372 429 - 0.519814
ybiI putative DnaK suppressor proteinchromosome CDS891007 267 - 0.520599
yciR putative PAS/PAC domain proteinchromosome CDS1796542 1983 + 0.505295
ydaA putative universal stress proteinchromosome CDS1755277 948 + 0.518987
ydiV putative diguanylate cyclase/phosphodiesterase domain 1chromosome CDS1422798 714 + 0.460784
yeaG putative Ser protein kinasechromosome CDS1361828 1935 - 0.506977
yeaJ putative methyl-accepting chemotaxis proteinchromosome CDS1358285 1494 - 0.448461
yebR putative GAF domain-containing proteinchromosome CDS1943986 585 - 0.511111
yecG putative universal stress proteinchromosome CDS2022854 429 + 0.522144
yegE putative PAS/PAC domain proteinchromosome CDS2208530 2991 + 0.539285
yehT putative regulatorchromosome CDS2253744 720 - 0.506944
yehU putative sensor/kinase in regulatory systemchromosome CDS2254460 1686 - 0.529063
yfeA putative diguanylate cyclase/phosphodiesterase domain 1 containing proteinchromosome CDS2526558 2190 - 0.505936
yfhA putative transcriptional regulator of two-component regulator proteinchromosome CDS2704074 1338 - 0.554559
yfhK putative sensory kinase in regulatory systemchromosome CDS2706174 1443 - 0.551629
yfiN putative diguanylate cyclase/phosphodiesterasechromosome CDS2813496 1221 + 0.504505
ygaA putative EBP family regulatorchromosome CDS2983365 1521 - 0.593688
ygiM putative SH3 domain proteinchromosome CDS3368544 615 + 0.505691
ygiX putative transcriptional regulatorchromosome CDS3340798 660 + 0.562121
ygiY putative sensory histidine kinase in regulatory systemchromosome CDS3341454 1350 + 0.562963
yhdA putative diguanylate cyclasechromosome CDS3544867 1941 - 0.533745
yhjB putative transcriptional regulatorchromosome CDS3779468 603 - 0.482587
yhjH putative diguanylate cyclase/phosphodiesterase domain 3 containing proteinchromosome CDS3786584 768 - 0.541667
yhjK putative diguanylate cyclase/phosphodiesterasechromosome CDS3791714 1974 - 0.54458
yjcC putative diguanylate cyclase/phosphodiesterasechromosome CDS4502381 1602 + 0.475031
yjfJ putative phage shock protein Achromosome CDS4614875 699 + 0.543634
yjiY putative carbon starvation proteinchromosome CDS4787565 2151 - 0.576011
yjjQ putative LuxR/UhpA family transcriptional regulatorchromosome CDS4806117 726 + 0.436639
ylaB putative diguanylate cyclase/phosphodiesterase domain 2chromosome CDS524577 1551 - 0.521599
ynaF putative universal stress proteinchromosome CDS1746131 435 + 0.478161
yojN putative sensor/kinase in regulatory systemchromosome CDS2367308 2670 + 0.513858