Gene list
Applied filters:
COG category: Signal transduction mechanisms
Organism: Shigella flexneri 2a str. 301, 301
Number of genes found: 142
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shigella flexneri 2a str. 301, 301 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SF2535 | similar to formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons | chromosome | CDS | 2600007 | 1833 | + | 0.521549 |
NA | SF1571 | orf, conserved hypothetical protein | chromosome | CDS | 1602941 | 948 | + | 0.504219 |
NA | SF0466 | orf, partial conserved hypothetical protein | chromosome | CDS | 479460 | 294 | - | 0.404762 |
NA | SF2447 | putative 2-component transcriptional regulator | chromosome | CDS | 2503224 | 735 | + | 0.47483 |
NA | SF1022 | putative ATP-binding protein | chromosome | CDS | 1068479 | 924 | + | 0.527056 |
NA | SF1393 | orf, conserved hypothetical protein | chromosome | CDS | 1433393 | 498 | + | 0.497992 |
NA | SF1524 | orf, conserved hypothetical protein | chromosome | CDS | 1554987 | 714 | + | 0.42577 |
NA | SF3434 | PemK protein | chromosome | CDS | 3514985 | 366 | + | 0.469945 |
NA | SF0784 | orf, conserved hypothetical protein | chromosome | CDS | 819492 | 1329 | + | 0.433409 |
NA | SF1156 | orf, conserved hypothetical protein | chromosome | CDS | 1198442 | 1524 | + | 0.450787 |
NA | SF1413 | orf, conserved hypothetical protein | chromosome | CDS | 1450268 | 1599 | - | 0.500938 |
NA | SF2418 | orf, conserved hypothetical protein | chromosome | CDS | 2465290 | 486 | - | 0.528807 |
NA | SF0995 | similar to histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA | chromosome | CDS | 1041099 | 2430 | - | 0.541564 |
NA | SF3992 | orf, conserved hypothetical protein | chromosome | CDS | 4120936 | 369 | + | 0.479675 |
NA | SF1963 | similar to periplasmic glutamine-binding protein; permease | chromosome | CDS | 1995731 | 858 | - | 0.495338 |
NA | SF3509 | orf, conserved hypothetical protein | chromosome | CDS | 3602067 | 762 | + | 0.372703 |
NA | SF3433 | orf, conserved hypothetical protein | chromosome | CDS | 3514722 | 270 | + | 0.5 |
apaH | SF0046 | diadenosine tetraphosphatase | chromosome | CDS | 49698 | 843 | - | 0.559905 |
arcA | SF4433 | negative response regulator of genes in aerobic pathways (sensors, ArcB and CpxA) | chromosome | CDS | 4605141 | 717 | - | 0.51046 |
arcB | SF3250 | histidine protein kinase/phosphatase, aerobic respiration sensor-response protein, sensor for arcA | chromosome | CDS | 3342856 | 2337 | - | 0.506205 |
argT | SF2386 | lysine-, arginine-, ornithine-binding periplasmic protein | chromosome | CDS | 2435121 | 783 | - | 0.498084 |
artI | SF0817 | arginine 3rd transport system periplasmic binding protein | chromosome | CDS | 848990 | 732 | - | 0.489071 |
artJ | SF0814 | arginine 3rd transport system periplasmic binding protein | chromosome | CDS | 846576 | 732 | - | 0.456284 |
baeR | SF2144 | transcriptional response regulatory protein (sensor BaeS) | chromosome | CDS | 2171058 | 723 | + | 0.538036 |
baeS | SF2143 | sensor protein for BaeR | chromosome | CDS | 2169658 | 1404 | + | 0.547721 |
barA | SF2799 | sensor-regulator | chromosome | CDS | 2874043 | 2757 | + | 0.498731 |
basR | SF4110 | transcriptional regulatory protein, | chromosome | CDS | 4274607 | 669 | + | 0.532138 |
basS | SF4111 | sensor protein for BasR | chromosome | CDS | 4275276 | 1101 | + | 0.543143 |
bglJ | SF4399 | 2-component transcriptional regulator | chromosome | CDS | 4571170 | 528 | + | 0.464015 |
bolA | SF0379 | possible regulator of murein genes | chromosome | CDS | 389538 | 351 | + | 0.48433 |
cheA | SF1937 | chemotaxis protein CheA | chromosome | CDS | 1971989 | 1965 | - | 0.531807 |
cheB | SF1932 | response regulator for chemotaxis (cheA sensor); protein methylesterase | chromosome | CDS | 1966081 | 1050 | - | 0.537143 |
cheR | SF1933 | response regulator for chemotaxis; protein glutamate methyltransferase | chromosome | CDS | 1967133 | 861 | - | 0.538908 |
cheW | SF1936 | positive regulator of CheA protein activity | chromosome | CDS | 1971465 | 504 | - | 0.515873 |
cheY | SF1931 | chemotaxis protein CheY | chromosome | CDS | 1965677 | 390 | - | 0.489744 |
cheZ | SF1930 | chemotaxis protein CheZ | chromosome | CDS | 1965022 | 645 | - | 0.533333 |
cpxA | SF3990 | probable sensor protein (histidine protein kinase) | chromosome | CDS | 4118586 | 1374 | - | 0.545124 |
cpxR | SF3991 | transcriptional regulator in 2-component system | chromosome | CDS | 4119956 | 699 | - | 0.51216 |
creB | SF4430 | catabolic regulation response regulator | chromosome | CDS | 4601559 | 690 | + | 0.549275 |
creC | SF4431 | catabolite repression sensor kinase for PhoB, alternative sensor for pho regulon | chromosome | CDS | 4602248 | 1425 | + | 0.538947 |
crp | SF3376 | cyclic AMP receptor protein | chromosome | CDS | 3455330 | 633 | + | 0.49763 |
csrA | SF2719 | carbon storage regulator | chromosome | CDS | 2792461 | 186 | - | 0.494624 |
cstA | SF0512 | carbon starvation protein | chromosome | CDS | 533257 | 2106 | + | 0.57075 |
dksA | SF0137 | dnaK suppressor protein | chromosome | CDS | 151927 | 456 | - | 0.526316 |
envZ | SF3423 | protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompC | chromosome | CDS | 3503803 | 1353 | - | 0.569845 |
evgA | SF2436 | putative positive transcription regulator (sensor EvgS) | chromosome | CDS | 2486818 | 615 | + | 0.406504 |
evgS | SF2437 | putative sensor for regulator EvgA | chromosome | CDS | 2487437 | 3594 | + | 0.407624 |
fhlA | SF2748 | formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons | chromosome | CDS | 2822687 | 2079 | + | 0.525253 |
fnr | SF1836 | global transcription regulator Fnr | chromosome | CDS | 1875732 | 753 | + | 0.508632 |
frvA | SF3977 | PTS system, fructose-specific IIA component | chromosome | CDS | 4106234 | 447 | - | 0.503356 |
gatA | SF2156 | galactitol-specific enzyme IIA of phosphotransferase system | chromosome | CDS | 2180275 | 453 | - | 0.421634 |
glnE | SF3094 | adenylylating enzyme for glutamine synthetase | chromosome | CDS | 3185926 | 2841 | - | 0.552974 |
glnG | SF3938 | sensor glnL response regulator (nitrogen regulator I, NRI) | chromosome | CDS | 4066558 | 1410 | - | 0.564539 |
glnH | SF0762 | periplasmic glutamine-binding protein; permease | chromosome | CDS | 791320 | 747 | - | 0.485944 |
glnL | SF3939 | histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII) | chromosome | CDS | 4067979 | 1050 | - | 0.544762 |
hisJ | SF2385 | histidine-binding periplasmic protein of high-affinity histidine transport system | chromosome | CDS | 2434106 | 795 | - | 0.496855 |
hnr | SF1235 | Hnr protein | chromosome | CDS | 1285281 | 1014 | + | 0.487179 |
hydG | SF4076 | response regulator of hydrogenase 3 activity (sensor HydH) | chromosome | CDS | 4222281 | 1326 | + | 0.567873 |
hydH | SF4075 | sensor kinase for HydG, hydrogenase 3 activity | chromosome | CDS | 4220908 | 1377 | + | 0.542484 |
lexA | SF4162 | regulator for SOS(lexA) regulon | chromosome | CDS | 4332059 | 609 | - | 0.52381 |
narL | SF1224 | nitrate/nitrite response regulator protein NarL | chromosome | CDS | 1270991 | 651 | - | 0.516129 |
narP | SF2277 | nitrate/nitrite response regulator (sensor NarQ) | chromosome | CDS | 2312501 | 648 | + | 0.523148 |
narX | SF1225 | nitrate/nitrite sensor protein NarX | chromosome | CDS | 1271634 | 1797 | - | 0.534224 |
nrfB | SF4131 | formate-dependent nitrite reductase | chromosome | CDS | 4299835 | 567 | + | 0.536155 |
ompR | SF3424 | response regulator (sensor, EnvZ) | chromosome | CDS | 3505152 | 720 | - | 0.547222 |
phoB | SF0336 | positive response regulator for pho regulon | chromosome | CDS | 346650 | 690 | + | 0.53913 |
phoP | SF1149 | transcriptional regulatory protein | chromosome | CDS | 1190960 | 672 | - | 0.480655 |
phoQ | SF1148 | sensor protein PhoQ | chromosome | CDS | 1189500 | 1461 | - | 0.514031 |
phoR | SF0337 | positive and negative sensor protein for pho regulon | chromosome | CDS | 347397 | 1296 | + | 0.533179 |
pspA | SF1309 | phage shock protein, inner membrane protein | chromosome | CDS | 1362226 | 669 | + | 0.491779 |
pspC | SF1311 | putative regulator of phage shock response | chromosome | CDS | 1363172 | 360 | + | 0.502778 |
pspF | SF1308 | psp operon transcriptional activator | chromosome | CDS | 1361082 | 993 | - | 0.520644 |
ptsN | SF3244 | phosphotransferase system enzyme IIA | chromosome | CDS | 3338747 | 492 | + | 0.518293 |
ptsP | SF2839 | PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) | chromosome | CDS | 2926550 | 2247 | - | 0.538051 |
ptxA | SF4350 | putative PTS system enzyme II A component | chromosome | CDS | 4525987 | 465 | + | 0.552688 |
rcsA | SF1996 | positive regulator for ctr capsule biosynthesis, positive transcription factor | chromosome | CDS | 2023835 | 624 | + | 0.383013 |
rcsB | SF2301 | positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) | chromosome | CDS | 2337580 | 651 | + | 0.477727 |
rcsC | SF2302 | sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB | chromosome | CDS | 2338430 | 2850 | - | 0.507719 |
relA | SF2797 | (p)ppGpp synthetase I (GTP pyrophosphokinase) | chromosome | CDS | 2870403 | 2235 | - | 0.53736 |
rseA | SF2634 | sigma-E factor regulatory protein RseA | chromosome | CDS | 2705969 | 651 | - | 0.519201 |
rseB | SF2633 | sigma-E factor regulatory protein RseB | chromosome | CDS | 2705013 | 957 | - | 0.507837 |
rseC | SF2632 | sigma-E factor | chromosome | CDS | 2704537 | 480 | - | 0.558333 |
rstA | SF1629 | response transcriptional regulatory protein (RstB sensor) | chromosome | CDS | 1656796 | 744 | + | 0.485215 |
rstB | SF1632 | sensor histidine protein kinase, RstA regulator | chromosome | CDS | 1659262 | 1302 | + | 0.503072 |
rtcR | SF3444 | putative 2-component regulator | chromosome | CDS | 3529479 | 1599 | + | 0.553471 |
rtn | SF2263 | orf, conserved hypothetical protein | chromosome | CDS | 2293929 | 1557 | + | 0.500963 |
spoT | SF3690 | (p)ppGpp synthetase II and guanosine-3,5-bis pyrophosphate 3-pyrophosphohydrolase | chromosome | CDS | 3792716 | 2109 | + | 0.537696 |
spy | SF1483 | periplasmic protein | chromosome | CDS | 1519826 | 486 | + | 0.50823 |
tap | SF1934 | methyl-accepting chemotaxis protein IV, peptide sensor receptor | chromosome | CDS | 1968012 | 1602 | - | 0.538702 |
tar | SF1935 | methyl-accepting chemotaxis protein II, aspartate sensor receptor | chromosome | CDS | 1969659 | 1662 | - | 0.527076 |
torR | SF0998 | TorCAD response regulator | chromosome | CDS | 1044894 | 693 | - | 0.526696 |
trg | SF1789 | methyl-accepting chemotaxis protein III, ribose sensor receptor | chromosome | CDS | 1825835 | 1641 | - | 0.508836 |
tsr | SF4386 | methyl-accepting chemotaxis protein I, serine sensor receptor | chromosome | CDS | 4557945 | 1665 | + | 0.53994 |
uhpA | SF3792 | response regulator | chromosome | CDS | 3900704 | 591 | + | 0.590525 |
uhpB | SF3793 | sensor histidine protein kinase, phosphorylates UhpA | chromosome | CDS | 3901294 | 1503 | + | 0.568862 |
umuD | SF1172 | mutagenesis and repair protein | chromosome | CDS | 1214458 | 420 | + | 0.478571 |
uspA | SF3526 | universal stress protein | chromosome | CDS | 3615796 | 435 | + | 0.485057 |
uvrY | SF1957 | putative 2-component transcriptional regulator | chromosome | CDS | 1990986 | 657 | - | 0.490107 |
waaP | SF3667 | lipopolysaccharide core biosynthesis protein | chromosome | CDS | 3774656 | 807 | - | 0.478315 |
waaY | SF3665 | putative LPS biosynthesis protein | chromosome | CDS | 3772873 | 708 | - | 0.305085 |
wzb | SF2125 | probable protein-tyrosine-phosphatase | chromosome | CDS | 2141015 | 444 | - | 0.538288 |
yaiC | SF0321 | orf, conserved hypothetical protein | chromosome | CDS | 332946 | 1116 | + | 0.536738 |
ybcZ | SF0471 | putative 2-component sensor protein | chromosome | CDS | 487232 | 1443 | - | 0.519058 |
ybdQ | SF0526 | orf, conserved hypothetical protein | chromosome | CDS | 547286 | 429 | - | 0.501166 |
ybeJ | SF0626 | putative periplasmic binding transport protein | chromosome | CDS | 662773 | 909 | + | 0.487349 |
ybeZ | SF0622 | putative ATP-binding protein in pho regulon | chromosome | CDS | 658302 | 1080 | + | 0.539815 |
ybiI | SF0753 | orf, conserved hypothetical protein | chromosome | CDS | 780815 | 267 | - | 0.509363 |
yccY | SF0984 | putative phosphatase | chromosome | CDS | 1032642 | 459 | - | 0.51634 |
ydaA | SF1837 | orf, conserved hypothetical protein | chromosome | CDS | 1876636 | 951 | + | 0.505783 |
yddV | SF1737 | orf, conserved hypothetical protein | chromosome | CDS | 1775180 | 1146 | + | 0.445899 |
yeaP | SF1430 | orf, conserved hypothetical protein | chromosome | CDS | 1468458 | 1026 | - | 0.478557 |
yebJ | SF1394 | orf, conserved hypothetical protein | chromosome | CDS | 1434566 | 120 | + | 0.525 |
yedQ | SF2000 | orf, conserved hypothetical protein | chromosome | CDS | 2026190 | 1485 | - | 0.524579 |
yedV | SF2015 | putative 2-component sensor protein | chromosome | CDS | 2038913 | 1359 | - | 0.393672 |
yedW | SF2016 | putative 2-component transcriptional regulator | chromosome | CDS | 2040271 | 672 | - | 0.446429 |
yehT | SF2197 | orf, conserved hypothetical protein | chromosome | CDS | 2223233 | 720 | - | 0.490278 |
yehU | SF2198 | putative 2-component sensor protein | chromosome | CDS | 2223949 | 1686 | - | 0.507711 |
yeiL | SF2248 | putative transcriptional regulator | chromosome | CDS | 2277785 | 579 | + | 0.435233 |
yfhA | SF2601 | putative 2-component transcriptional regulator | chromosome | CDS | 2672340 | 1335 | - | 0.543071 |
yfhK | SF2603 | putative 2-component sensor protein | chromosome | CDS | 2674542 | 1491 | - | 0.52381 |
ygaA | SF2732 | putative 2-component transcriptional regulator | chromosome | CDS | 2804448 | 1590 | - | 0.556604 |
ygaG | SF2714 | orf, conserved hypothetical protein | chromosome | CDS | 2788116 | 516 | - | 0.515504 |
ygiM | SF3096 | orf, conserved hypothetical protein | chromosome | CDS | 3190332 | 621 | + | 0.523349 |
ygiX | SF3066 | putative 2-component transcriptional regulator | chromosome | CDS | 3163039 | 660 | + | 0.513636 |
ygiY | SF3067 | putative 2-component sensor protein | chromosome | CDS | 3163695 | 1275 | + | 0.52549 |
yhdA | SF3290 | orf, conserved hypothetical protein | chromosome | CDS | 3388964 | 1941 | - | 0.504894 |
yhdW | SF3520 | putative periplasmic binding transport protein | chromosome | CDS | 3609890 | 918 | - | 0.489107 |
yhdW | SF3304 | putative periplasmic binding transport protein | chromosome | CDS | 3401320 | 1026 | + | 0.493177 |
yhjB | SF3552 | putative regulator | chromosome | CDS | 3641452 | 603 | - | 0.47927 |
yhjH | SF3558 | orf, conserved hypothetical protein | chromosome | CDS | 3648580 | 768 | - | 0.528646 |
yhjK | SF3561 | orf, conserved hypothetical protein | chromosome | CDS | 3653793 | 1950 | - | 0.52359 |
yihK | SF3941 | putative GTP-binding factor | chromosome | CDS | 4070983 | 1824 | + | 0.531798 |
yiiT | SF4001 | putative regulator | chromosome | CDS | 4128276 | 429 | + | 0.431235 |
yjaI | SF4074 | orf, conserved hypothetical protein | chromosome | CDS | 4220245 | 567 | - | 0.516755 |
yjdG | SF4099 | putative 2-component transcriptional regulator | chromosome | CDS | 4258522 | 720 | + | 0.501389 |
yjdH | SF4098 | putative 2-component sensor protein | chromosome | CDS | 4256894 | 1632 | + | 0.501838 |
yjiY | SF4372 | putative carbon starvation protein | chromosome | CDS | 4543329 | 2166 | - | 0.562789 |
yjjQ | SF4398 | putative regulator | chromosome | CDS | 4570478 | 585 | + | 0.45812 |
ylaB | SF0402 | orf, conserved hypothetical protein | chromosome | CDS | 413598 | 1551 | - | 0.477112 |
ylcA | SF0472 | putative 2-component transcriptional regulator | chromosome | CDS | 488664 | 684 | - | 0.54386 |
ynaF | SF1824 | putative filament protein | chromosome | CDS | 1862500 | 507 | + | 0.473373 |
yojN | SF2300 | putative 2-component sensor protein | chromosome | CDS | 2334891 | 2673 | + | 0.492705 |