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2024-05-02 04:01:23

Gene list

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COG category: Signal transduction mechanisms
Organism: Escherichia coli K12, K-12

Number of genes found: 186

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Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA b2856 orf, hypothetical proteinchromosome CDS2992959 156 - 0.365385
aceK b4016 isocitrate dehydrogenase kinase/phosphatasechromosome CDS4216619 1737 + 0.527922
aer b3072 aerotaxis sensor receptor, flavoproteinchromosome CDS3215578 1521 - 0.547666
apaH b0049 diadenosine tetraphosphatasechromosome CDS50380 843 - 0.557533
arcA b4401 negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA)chromosome CDS4637613 717 - 0.51046
arcB b3210 aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcAchromosome CDS3348711 2337 - 0.506205
argT b2310 lysine-, arginine-, ornithine-binding periplasmic proteinchromosome CDS2425031 783 - 0.501916
artI b0863 arginine 3rd transport system periplasmic binding proteinchromosome CDS901480 732 - 0.502732
artJ b0860 arginine 3rd transport system periplasmic binding proteinchromosome CDS899067 732 - 0.448087
atoC b2220 response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS)chromosome CDS2319888 1386 + 0.489899
atoS b2219 sensor protein AtoS for response regulator AtoCchromosome CDS2318065 1827 + 0.485495
baeR b2079 transcriptional response regulatory protein (sensor BaeS)chromosome CDS2162300 723 + 0.540802
baeS b2078 sensor protein (for BaeR)chromosome CDS2160900 1404 + 0.537037
barA b2786 sensor-regulator, activates OmpR by phophorylationchromosome CDS2913079 2757 + 0.498368
basR b4113 transcriptional regulatory protein, member of 2-component regulatory system,chromosome CDS4331305 669 - 0.532138
basS b4112 sensor protein for basRchromosome CDS4330204 1092 - 0.542125
bglJ b4366 2-component transcriptional regulatorchromosome CDS4602183 678 + 0.452802
bipA b3871 GTP-binding proteinchromosome CDS4056430 1824 + 0.534539
bolA b0435 possible regulator of murein geneschromosome CDS453663 351 + 0.481481
cdaR b0162 regulator of D-galactarate, D-glucarate and D-glycerate metabolismchromosome CDS182445 1176 + 0.528061
cheA b1888 sensory transducer kinase between chemo-signal receptors and CheB and CheYchromosome CDS1971384 1965 - 0.531298
cheB b1883 response regulator for chemotaxis (cheA sensor); protein methylesterasechromosome CDS1965476 1050 - 0.542857
cheR b1884 response regulator for chemotaxis; protein glutamate methyltransferasechromosome CDS1966528 861 - 0.542393
cheW b1887 positive regulator of CheA protein activitychromosome CDS1970860 504 - 0.519841
cheY b1882 chemotaxis regulator transmits chemoreceptor signals to flagelllar motor componentschromosome CDS1965072 390 - 0.492308
cheZ b1881 chemotactic response; CheY protein phophatase; antagonist of CheY as switch regulatorchromosome CDS1964417 645 - 0.534884
chpA b2782 probable growth inhibitor, PemK-like, autoregulatedchromosome CDS2908778 336 - 0.46131
chpB b4225 probable growth inhibitor, PemK-like, autoregulatedchromosome CDS4446715 351 + 0.538462
chpR b2783 suppressor of inhibitory function of ChpA, PemI-like, autoregulatedchromosome CDS2909113 249 - 0.485944
chpS b4224 suppressor of inhibitory function of ChpB, PemI-like, autoregulatedchromosome CDS4446464 258 + 0.507752
citA b0619 putative sensor-type proteinchromosome CDS651458 1659 + 0.500904
citB b0620 sequence similarity to Shigella regulatorchromosome CDS653085 681 + 0.50514
cmtB b2934 PTS system, mannitol-specific enzyme II component, crypticchromosome CDS3076909 444 - 0.423423
cpxA b3911 probable sensor protein (histidine protein kinase), acting on arcAchromosome CDS4101625 1374 - 0.545852
cpxP b4484 periplasmic repressor of cpx regulon by interaction with CpxAchromosome CDS4103843 501 + 0.500998
cpxR b3912 transcriptional regulator in 2-component systemchromosome CDS4102995 699 - 0.513591
creB b4398 catabolic regulation response regulatorchromosome CDS4634030 690 + 0.552174
creC b4399 catabolite repression sensor kinase for PhoB; alternative sensor for pho regulonchromosome CDS4634719 1425 + 0.538947
crp b3357 cyclic AMP receptor proteinchromosome CDS3484142 633 + 0.494471
csrA b2696 carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface propertieschromosome CDS2816983 186 - 0.494624
cstA b0598 carbon starvation proteinchromosome CDS629117 2106 + 0.572175
cusR b0571 response regulator of copper sensing systemchromosome CDS593983 684 - 0.538012
cusS b0570 sensor kinase of copper sensing two-component system.chromosome CDS592551 1443 - 0.520443
dcuR b4124 response regulator of fumarate two-component regulatory systemchromosome CDS4347338 720 - 0.493056
dcuS b4125 sensor of fumarate two-component regulatory systemchromosome CDS4348054 1632 - 0.499387
dksA b0145 dnaK suppressor proteinchromosome CDS160149 456 - 0.526316
dos b1489 putative phosphodiesterase, oxygen-sensing proteinchromosome CDS1561358 2424 - 0.502475
envZ b3404 protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompCchromosome CDS3532538 1353 - 0.570584
evgA b2369 putative positive transcription regulator (sensor EvgS)chromosome CDS2481777 615 + 0.4
evgS b2370 putative sensor for regulator EvgAchromosome CDS2482396 3594 + 0.40818
fecR b4292 regulator for fec operon, periplasmicchromosome CDS4514787 954 - 0.590147
fhlA b2731 formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operonschromosome CDS2852360 2079 + 0.525734
fimZ b0535 fimbrial Z protein; probable signal transducerchromosome CDS563071 633 - 0.366509
fliY b1920 putative periplasmic binding transport proteinchromosome CDS1997609 801 - 0.498127
fnr b1334 transcriptional regulation of aerobic, anaerobic respiration, osmotic balancechromosome CDS1396798 753 - 0.5166
frvA b3900 PTS system, fructose-specific IIA componentchromosome CDS4090400 447 - 0.501119
frvR b3897 putative frv operon regulatory proteinchromosome CDS4086130 1749 - 0.500286
gatA b2094 galactitol-specific enzyme IIA of phosphotransferase systemchromosome CDS2172619 453 - 0.426049
glnE b3053 adenylylating enzyme for glutamine synthetasechromosome CDS3194823 2841 - 0.559662
glnG b3868 response regulator for gln (sensor glnL) (nitrogen regulator I, NRI)chromosome CDS4051892 1410 - 0.569504
glnH b0811 periplasmic glutamine-binding protein; permeasechromosome CDS846481 747 - 0.487282
glnL b3869 histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII)chromosome CDS4053313 1050 - 0.552381
gltI b0655 glutamate/aspartate periplasmic binding proteinchromosome CDS686062 909 - 0.487349
hisJ b2309 histidine-binding periplasmic protein of high-affinity histidine transport systemchromosome CDS2424028 783 - 0.487867
hnr b1235 Hnr proteinchromosome CDS1289465 1014 + 0.486193
hyfR b2491 putative 2-component regulator, interaction with sigma 54chromosome CDS2609943 1992 + 0.525602
kdpD b0695 sensor for high-affinity potassium transport systemchromosome CDS720953 2685 - 0.575791
kdpE b0694 regulator of kdp operon (transcriptional effector)chromosome CDS720279 678 - 0.566372
lexA b4043 regulator for SOS(lexA) regulonchromosome CDS4255138 609 + 0.518883
narL b1221 pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor geneschromosome CDS1274402 651 - 0.517665
narP b2193 nitrate/nitrite response regulator (sensor NarQ)chromosome CDS2288522 648 + 0.524691
narQ b2469 sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL)chromosome CDS2583753 1701 + 0.516167
narX b1222 nitrate/nitrate sensor, histidine protein kinase acts on NarL regulatorchromosome CDS1275045 1797 - 0.533667
nrfB b4071 formate-dependent nitrite reductase; a penta-haeme cytochrome cchromosome CDS4287262 573 + 0.537522
ompR b3405 response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesischromosome CDS3533887 720 - 0.551389
phoB b0399 positive response regulator for pho regulon, sensor is PhoR (or CreC)chromosome CDS416366 690 + 0.544928
phoH b1020 PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvationchromosome CDS1084215 1065 + 0.522066
phoP b1130 transcriptional regulatory proteinchromosome CDS1188999 672 - 0.477679
phoQ b1129 sensor protein PhoQchromosome CDS1187539 1461 - 0.513347
phoR b0400 positive and negative sensor protein for pho regulonchromosome CDS417113 1296 + 0.530093
pphA b1838 protein phosphatase 1chromosome CDS1920337 660 - 0.477273
pphB b2734 protein phosphatase 2chromosome CDS2857782 657 + 0.423135
proQ b1831 regulator of ProPchromosome CDS1912860 699 - 0.529328
prpR b0330 regulator for prp operonchromosome CDS346081 1587 - 0.551985
pspA b1304 phage shock protein, inner membrane proteinchromosome CDS1366103 669 + 0.493274
pspC b1306 phage shock protein: activates phage shock-protein expressionchromosome CDS1367049 360 + 0.502778
pspF b1303 psp operon transcriptional activatorchromosome CDS1364959 993 - 0.516616
ptsN b3204 phosphotransferase system enzyme IIA, regulates N metabolismchromosome CDS3344600 492 + 0.522358
ptsP b2829 PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins)chromosome CDS2964210 2247 - 0.538941
ptxA b4195 putative PTS system enzyme II A componentchromosome CDS4419731 465 + 0.539785
rcsB b2217 positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)chromosome CDS2314199 651 + 0.477727
rcsC b2218 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsBchromosome CDS2315049 2802 - 0.509993
relA b2784 (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factorchromosome CDS2909439 2235 - 0.537808
rfaP b3630 lipopolysaccharide core biosynthesis; phosphorylation of core heptose; attaches phosphate-containing substrate to LPS cochromosome CDS3803176 798 - 0.433584
rfaZ b3624 lipopolysaccharide core biosynthesischromosome CDS3797368 852 - 0.325117
rseA b2572 sigma-E factor, negative regulatory proteinchromosome CDS2706776 651 - 0.522273
rseB b2571 regulates activity of sigma-E factorchromosome CDS2705820 957 - 0.507837
rseC b2570 sigma-E factor, negative regulatory proteinchromosome CDS2705344 480 - 0.547917
rstA b1608 response transcriptional regulatory protein (RstB sensor)chromosome CDS1680174 729 + 0.491084
rstB b1609 sensor histidine protein kinase (RstA regulator)chromosome CDS1680906 1302 + 0.506912
rtcR b3422 sigma54-dependent regulator of rtcBA expressionchromosome CDS3556290 1599 + 0.557849
rtn b2176 orf, hypothetical proteinchromosome CDS2268748 1557 + 0.505459
sgcA b4302 putative PTS system enzyme II A componentchromosome CDS4525572 432 - 0.543981
sixA b2340 phosphohistidine phosphatasechromosome CDS2454349 486 - 0.532922
spoT b3650 (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolasechromosome CDS3820423 2109 + 0.537221
spy b1743 periplasmic protein related to spheroblast formationchromosome CDS1823164 486 - 0.50823
tap b1885 methyl-accepting chemotaxis protein IV, peptide sensor receptorchromosome CDS1967407 1602 - 0.535581
tar b1886 methyl-accepting chemotaxis protein II, aspartate sensor receptorchromosome CDS1969054 1662 - 0.527677
torR b0995 response transcriptional regulator for torA (sensor TorS)chromosome CDS1056485 693 - 0.52381
torS b0993 sensor protein torS (regulator TorR)chromosome CDS1052657 2715 - 0.538122
trg b1421 methyl-accepting chemotaxis protein III, ribose sensor receptorchromosome CDS1490494 1641 + 0.512492
tsr b4355 methyl-accepting chemotaxis protein I, serine sensor receptorchromosome CDS4589680 1656 + 0.546498
uhpA b3669 response regulator, positive activator of uhpT transcription (sensor, uhpB)chromosome CDS3848159 591 - 0.588832
uhpB b3668 sensor histidine protein kinase phosphorylates UhpAchromosome CDS3846657 1506 - 0.571049
umuD b1183 SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuCchromosome CDS1229990 420 + 0.480952
uspA b3495 universal stress protein; broad regulatory function?chromosome CDS3638134 435 + 0.491954
uvrY b1914 putative 2-component transcriptional regulatorchromosome CDS1992727 657 - 0.497717
wzb b2061 low molecular weight protein-tyrosine-phosphatasechromosome CDS2133679 444 - 0.545045
yahA b0315 orf, hypothetical proteinchromosome CDS331595 1089 + 0.459137
yaiC b0385 orf, hypothetical proteinchromosome CDS402927 1116 + 0.536738
ybdQ b0607 orf, hypothetical proteinchromosome CDS640662 429 - 0.498834
ybeZ b0660 putative ATP-binding protein in pho regulonchromosome CDS691561 1080 - 0.542593
ybiI b0803 orf, hypothetical proteinchromosome CDS837413 267 - 0.520599
yccY b0982 putative phosphatasechromosome CDS1043453 459 - 0.520697
ycdT b1025 orf, hypothetical proteinchromosome CDS1092099 1359 + 0.385578
ycgF b1163 orf, hypothetical proteinchromosome CDS1213487 1212 - 0.435644
ycgG b1168 putative proteaseschromosome CDS1216509 1566 + 0.445722
yciR b1285 orf, hypothetical proteinchromosome CDS1342781 1986 - 0.484894
ydaA b1333 orf, hypothetical proteinchromosome CDS1395696 951 - 0.505783
ydaM b1341 orf, hypothetical proteinchromosome CDS1404587 1293 - 0.471771
yddV b1490 orf, hypothetical proteinchromosome CDS1563782 1383 - 0.443962
ydeH b1535 orf, hypothetical proteinchromosome CDS1620984 891 - 0.448934
ydiV b1707 orf, hypothetical proteinchromosome CDS1789331 714 - 0.422969
yeaG b1783 orf, hypothetical proteinchromosome CDS1864932 1935 + 0.501292
yeaI b1785 orf, hypothetical proteinchromosome CDS1868409 1476 + 0.384824
yeaJ b1786 orf, hypothetical proteinchromosome CDS1869885 1671 + 0.459007
yeaP b1794 orf, hypothetical proteinchromosome CDS1875610 1155 + 0.465801
yebR b1832 orf, hypothetical proteinchromosome CDS1913655 552 - 0.478261
yecG b1895 putative regulatorchromosome CDS1977777 429 + 0.449883
yedQ b1956 orf, hypothetical proteinchromosome CDS2024347 1710 - 0.51462
yedV b1968 putative 2-component sensor proteinchromosome CDS2034818 1359 - 0.396615
yedW b1969 putative 2-component transcriptional regulatorchromosome CDS2036176 720 - 0.4375
yegE b2067 putative sensor-type proteinchromosome CDS2141290 3318 + 0.523508
yehT b2125 orf, hypothetical proteinchromosome CDS2210265 735 - 0.496599
yehU b2126 putative 2-component sensor proteinchromosome CDS2210981 1686 - 0.505931
yeiL b2163 stationary phase nitrogen starvation regulatorchromosome CDS2253377 660 + 0.45
yfeA b2395 orf, hypothetical proteinchromosome CDS2513665 2307 - 0.488513
yfgF b2503 putative cytochrome C-type biogenesis proteinchromosome CDS2624717 2244 - 0.466132
yfhA b2554 putative 2-component transcriptional regulatorchromosome CDS2685491 1335 - 0.547566
yfhK b2556 putative 2-component sensor proteinchromosome CDS2687693 1491 - 0.529846
yfiN b2604 orf, hypothetical proteinchromosome CDS2740405 1227 + 0.483293
yfjI b2625 orf, hypothetical proteinchromosome CDS2757007 1410 + 0.379433
ygaA b2709 putative 2-component transcriptional regulatorchromosome CDS2828797 1590 - 0.557233
ygaG b2687 orf, hypothetical proteinchromosome CDS2812240 516 - 0.515504
ygeK b2855 putative 2-component transcriptional regulatorchromosome CDS2992482 447 - 0.355705
ygeV b2869 putative transcriptional regulatorchromosome CDS3002030 1779 - 0.45756
ygiM b3055 orf, hypothetical proteinchromosome CDS3199229 621 + 0.52657
ygiX b3025 putative 2-component transcriptional regulatorchromosome CDS3167850 660 + 0.516667
ygiY b3026 putative 2-component sensor proteinchromosome CDS3168506 1350 + 0.53037
yhaC b3121 orf, hypothetical proteinchromosome CDS3266437 1188 + 0.318182
yhdA b3252 orf, hypothetical proteinchromosome CDS3399414 1941 - 0.506955
yhdW b3268 putative periplasmic binding transport proteinchromosome CDS3417171 918 + 0.493464
yhjB b3520 putative regulatorchromosome CDS3669315 603 - 0.477612
yhjH b3525 orf, hypothetical proteinchromosome CDS3676443 771 - 0.526589
yhjK b3529 orf, hypothetical proteinchromosome CDS3681653 1956 - 0.526074
yiiT b3923 putative regulatorchromosome CDS4111316 429 + 0.431235
yjcC b4061 orf, hypothetical proteinchromosome CDS4273494 1587 + 0.447385
yjfJ b4182 putative alpha helical proteinchromosome CDS4408576 699 + 0.513591
yjiY b4354 putative carbon starvation proteinchromosome CDS4587152 2166 - 0.559557
yjjQ b4365 putative regulatorchromosome CDS4601500 726 + 0.450413
ylaB b0457 orf, hypothetical proteinchromosome CDS476291 1557 - 0.480411
yliE b0833 orf, hypothetical proteinchromosome CDS872202 2349 + 0.415922
yliF b0834 orf, hypothetical proteinchromosome CDS874558 1329 + 0.434913
ymfK b1145 putative lambdoid prophage e14 repressor proteinchromosome CDS1201482 675 - 0.444444
ymfL b1147 hypothetical protein in lambdoid prophage e14 regionchromosome CDS1202479 570 + 0.494737
ynaA b1368 putative alpha helix proteinchromosome CDS1424478 1029 + 0.468416
ynaF b1376 putative filament proteinchromosome CDS1433209 507 - 0.473373
yneF b1522 orf, hypothetical proteinchromosome CDS1608931 948 - 0.504219
yoaD b1815 orf, hypothetical proteinchromosome CDS1896421 1629 + 0.507673
yojN b2216 putative 2-component sensor proteinchromosome CDS2311510 2673 + 0.493827
ypdA b2380 putative sensor proteinchromosome CDS2496693 1698 + 0.514134
ypdB b2381 putative 2-component transcriptional regulatorchromosome CDS2498405 735 + 0.47483
yqeH b2846 orf, hypothetical proteinchromosome CDS2985498 693 + 0.369408
zraP b4002 Zn-binding periplasmic proteinchromosome CDS4199286 567 - 0.516755
zraR b4004 response regulator of Zn/Pb responsive two-component regulatory systemchromosome CDS4201343 1326 + 0.562594
zraS b4003 sensor kinase of Zn/Pb responsive two-component regulatory systemchromosome CDS4199949 1398 + 0.542918