Gene list
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COG category: Signal transduction mechanisms
Organism: Escherichia coli O157:H7 EDL933, EDL933
Number of genes found: 210
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| Escherichia coli O157:H7 EDL933, EDL933 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Z2736 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2466222 | 714 | - | 0.421569 |
| NA | Z0954 | unknown protein encoded by prophage CP-933K | SubName: Full=Uncharacterized protein; | chromosome | CDS | 898894 | 432 | + | 0.451389 |
| NA | Z5692 | putative histidine kinase | SubName: Full=Putative histidine kinase; SubName: Full=Putative histidine protein kinase; | chromosome | CDS | 5196438 | 2271 | + | 0.575077 |
| NA | Z0326 | unknown protein encoded in prophage CP-933I | SubName: Full=Uncharacterized protein; | chromosome | CDS | 312381 | 618 | + | 0.305825 |
| NA | Z2092 | unknown protein encoded within prophage CP-933O | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1883871 | 426 | + | 0.530516 |
| NA | Z0258 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 256527 | 1302 | - | 0.56682 | |
| NA | Z3933 | unknown protein encoded by prophage CP-933Y | SubName: Full=Putative serine/threonine protein phosphatase; SubName: Full=Serine/threonin protein phosphatase; SubName: Full=Uncharacterized protein; | chromosome | CDS | 3555705 | 666 | - | 0.45045 |
| NA | Z2421 | orf, hypothetical protein | RecName: Full=Uncharacterized protein YdaM; | chromosome | CDS | 2169839 | 1293 | + | 0.470998 |
| NA | Z1467 | unknown protein encoded by bacteriophage BP-933W | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1356135 | 447 | + | 0.53915 |
| NA | Z3047 | orf, hypothetical protein | RecName: Full=Cellulose synthesis regulatory protein; | chromosome | CDS | 2726082 | 1695 | - | 0.514454 |
| NA | Z0309 | putative cI repressor protein for prophage CP-933H | SubName: Full=Putative cI repressor protein for prophage CP-933H; SubName: Full=Repressor protein CI; | chromosome | CDS | 301940 | 714 | - | 0.462185 |
| NA | Z2182 | orf, hypothetical protein | RecName: Full=Uncharacterized protein YneF; | chromosome | CDS | 1952706 | 948 | + | 0.503165 |
| NA | Z2858 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2575430 | 1629 | + | 0.50399 |
| NA | Z0462 | putative sensor kinase; hexosephosphate transport | SubName: Full=Putative sensor histidine protein kinase; SubName: Full=Putative sensor kinase hexosephosphate transport; | chromosome | CDS | 443763 | 1542 | - | 0.536965 |
| NA | Z3358 | putative repressor protein CI of prophage CP-933V | SubName: Full=Putative repressor protein CI of prophage CP-933V; | chromosome | CDS | 3004015 | 648 | + | 0.521605 |
| NA | Z2220 | putative sensor kinase | SubName: Full=Putative sensor kinase; | chromosome | CDS | 2001483 | 1266 | + | 0.509479 |
| NA | Z2879 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2592668 | 552 | - | 0.481884 |
| NA | Z1057 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 998971 | 2349 | + | 0.416347 |
| NA | Z3603 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3252698 | 486 | - | 0.534979 |
| NA | Z0463 | putative response regulator; hexosephosphate transport | SubName: Full=Putative response regulator hexosephosphate transport; SubName: Full=Putative transcription regulator; | chromosome | CDS | 445304 | 630 | - | 0.538095 |
| NA | Z3645 | putative sensor protein | RecName: Full=Sensor histidine kinase YpdA; EC=2.7.13.3; | chromosome | CDS | 3296765 | 1698 | + | 0.507656 |
| NA | Z1478 | unknown protein encoded by bacteriophage BP-933W | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1364398 | 1008 | + | 0.531746 |
| NA | Z3126 | putative repressor protein of prophage CP-933U | SubName: Full=Putative repressor protein of prophage CP-933U; | chromosome | CDS | 2782567 | 591 | + | 0.431472 |
| NA | Z6021 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2281573 | 912 | - | 0.379386 |
| NA | Z3646 | putative 2-component transcriptional regulator | RecName: Full=Transcriptional regulatory protein YpdB; | chromosome | CDS | 3298477 | 735 | + | 0.472109 |
| NA | Z1491 | unknown protein encoded by bacteriophage BP-933W | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1377180 | 657 | + | 0.531202 |
| NA | Z1528 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1421055 | 1611 | + | 0.366853 | |
| NA | Z2221 | SubName: Full=Oxygen sensing protein; SubName: Full=Uncharacterized protein; | chromosome | CDS | 2002793 | 1104 | + | 0.496377 | |
| NA | Z2836 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2554523 | 849 | + | 0.487633 | |
| NA | Z1772 | unknown protein encoded by prophage CP-933N | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1630668 | 426 | + | 0.528169 |
| NA | Z3235 | partial putative sensor kinase | SubName: Full=Partial putative sensor kinase; SubName: Full=Uncharacterized protein; | chromosome | CDS | 2889330 | 534 | + | 0.543071 |
| NA | Z1444 | putative serine/threonine kinase encoded by bacteriophage BP-933W | SubName: Full=Putative serine/threonine kinase encoded by bacteriophage BP-933W; | chromosome | CDS | 1340932 | 1047 | - | 0.354346 |
| NA | Z3766 | putative cytochrome C-type biogenesis protein | SubName: Full=Putative cytochrome C-type biogenesis protein; | chromosome | CDS | 3412673 | 2244 | - | 0.464795 |
| NA | Z5684 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 5189540 | 726 | + | 0.548209 |
| NA | Z3236 | partial putative sensor kinase | SubName: Full=Partial putative sensor kinase; | chromosome | CDS | 2889841 | 2808 | + | 0.523148 |
| NA | Z1058 | orf, hypothetical protein | RecName: Full=Uncharacterized membrane protein YliF; | chromosome | CDS | 1001327 | 1329 | + | 0.434913 |
| NA | Z2090 | putative repressor protein encoded within prophage CP-933O | SubName: Full=Putative repressor protein encoded within prophage CP-933O; | chromosome | CDS | 1882915 | 639 | - | 0.43662 |
| NA | Z2219 | orf, hypothetical protein | RecName: Full=Diguanylate cyclase DosC; Short=DGC; EC=2.7.7.65; AltName: Full=Direct oxygen-sensing cyclase; | chromosome | CDS | 2000100 | 1383 | + | 0.445409 |
| NA | Z4875 | putative phosphotransferase system enzyme subunit | SubName: Full=Putative phosphotransferase system enzyme IIA; SubName: Full=Putative phosphotransferase system enzyme subunit; | chromosome | CDS | 4421785 | 474 | + | 0.495781 |
| NA | Z4176 | putative 2-component transcriptional regulator | RecName: Full=Uncharacterized response regulatory protein YgeK; | chromosome | CDS | 3784402 | 447 | - | 0.360179 |
| NA | Z5693 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 5198532 | 177 | + | 0.615819 | |
| 'yeaJ | Z2826 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2548849 | 1491 | + | 0.458753 | |
| aceK | Z5602 | isocitrate dehydrogenase kinase/phosphatase | RecName: Full=Isocitrate dehydrogenase kinase/phosphatase; Short=IDH kinase/phosphatase; Short=IDHK/P; EC=2.7.11.5; EC=3.1.3.-; | chromosome | CDS | 5095741 | 1737 | + | 0.527922 |
| aer | Z4425 | aerotaxis sensor receptor, flavoprotein | SubName: Full=Aerotaxis sensor receptor, flavoprotein; | chromosome | CDS | 4024402 | 1521 | - | 0.554241 |
| apaH | Z0058 | diadenosine tetraphosphatase | RecName: Full=Bis(5-nucleosyl)-tetraphosphatase, symmetrical; EC=3.6.1.41; AltName: Full=Ap4A hydrolase; AltName: Full=Diadenosine 5,5-P1,P4-tetraphosphate pyrophosphohydrolase; AltName: Full=Diadenosine tetraphosphatase; | chromosome | CDS | 55350 | 849 | - | 0.559482 |
| arcA | Z6004 | negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) | RecName: Full=Aerobic respiration control protein ArcA; | chromosome | CDS | 5526383 | 717 | - | 0.509066 |
| arcB | Z4574 | aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA | RecName: Full=Aerobic respiration control sensor protein ArcB; EC=2.7.13.3; | chromosome | CDS | 4160259 | 2337 | - | 0.504493 |
| argT | Z3572 | lysine-, arginine-, ornithine-binding periplasmic protein | SubName: Full=Lysine-, arginine-, ornithine-binding periplasmic protein; | chromosome | CDS | 3223135 | 783 | - | 0.510856 |
| artI | Z1093 | arginine 3rd transport system periplasmic binding protein | SubName: Full=Arginine 3rd transport system periplasmic binding protein; | chromosome | CDS | 1032513 | 732 | - | 0.491803 |
| artJ | Z1090 | arginine 3rd transport system periplasmic binding protein | SubName: Full=Arginine 3rd transport system periplasmic binding protein; | chromosome | CDS | 1030100 | 783 | - | 0.469987 |
| baeR | Z3248 | transcriptional response regulatory protein (sensor BaeS) | SubName: Full=Transcriptional response regulatory protein (Sensor BaeS); | chromosome | CDS | 2909928 | 723 | + | 0.538036 |
| baeS | Z3247 | sensor protein (for BaeR) | SubName: Full=Sensor protein (For BaeR); SubName: Full=Sensor protein for BaeR; | chromosome | CDS | 2908528 | 1404 | + | 0.539174 |
| barA | Z4101 | sensor-regulator, activates OmpR by phophorylation | RecName: Full=Signal transduction histidine-protein kinase BarA; EC=2.7.13.3; | chromosome | CDS | 3704754 | 2757 | + | 0.49728 |
| basR | Z5715 | transcriptional regulatory protein, member of 2-component regulatory system, | SubName: Full=2-component regulatory system regulatory protein BasR; SubName: Full=Transcriptional regulatory protein 2-component regulatory system member; | chromosome | CDS | 5217716 | 669 | - | 0.532138 |
| basS | Z5714 | sensor protein for basR | SubName: Full=Sensor protein BasS for basR; SubName: Full=Sensor protein for basR; | chromosome | CDS | 5216615 | 1092 | - | 0.545788 |
| bglJ | Z5967 | 2-component transcriptional regulator | SubName: Full=2-component transcriptional regulator; | chromosome | CDS | 5492514 | 678 | + | 0.454277 |
| bolA | Z0539 | possible regulator of murein genes | SubName: Full=Possible regulator of murein genes; SubName: Full=Putative regulator of murein genes; | chromosome | CDS | 520494 | 351 | + | 0.481481 |
| cheA | Z2942 | sensory transducer kinase between chemo-signal receptors and CheB and CheY | SubName: Full=Sensory transducer kinase CheA; SubName: Full=Sensory transducer kinase between chemo-signal receptors and CheB and CheY; | chromosome | CDS | 2650499 | 1965 | - | 0.53028 |
| cheB | Z2937 | response regulator for chemotaxis (cheA sensor); protein methylesterase | RecName: Full=Chemotaxis response regulator protein-glutamate methylesterase; EC=3.1.1.61; | chromosome | CDS | 2644593 | 1050 | - | 0.539048 |
| cheR | Z2938 | response regulator for chemotaxis; protein glutamate methyltransferase | RecName: Full=Chemotaxis protein methyltransferase; EC=2.1.1.80; | chromosome | CDS | 2645645 | 861 | - | 0.54007 |
| cheW | Z2941 | positive regulator of CheA protein activity | RecName: Full=Chemotaxis protein CheW; | chromosome | CDS | 2649975 | 504 | - | 0.511905 |
| cheY | Z2936 | chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components | RecName: Full=Chemotaxis protein CheY; | chromosome | CDS | 2644189 | 390 | - | 0.494872 |
| cheZ | Z2935 | chemotactic response; CheY protein phophatase; antagonist of CheY as switch regulator | RecName: Full=Protein phosphatase CheZ; EC=3.1.3.-; AltName: Full=Chemotaxis protein CheZ; | chromosome | CDS | 2643534 | 645 | - | 0.534884 |
| chpA | Z4097 | probable growth inhibitor, PemK-like, autoregulated | RecName: Full=mRNA interferase MazF; EC=3.1.-.-; AltName: Full=Endoribonuclease MazF; AltName: Full=Toxin MazF; | chromosome | CDS | 3700453 | 336 | - | 0.473214 |
| chpB | Z5836 | probable growth inhibitor, PemK-like, autoregulated | SubName: Full=Probable growth inhibitor; SubName: Full=Probable growth inhibitor, PemK-like, autoregulated; | chromosome | CDS | 5334158 | 351 | + | 0.535613 |
| chpR | Z4098 | suppressor of inhibitory function of ChpA, PemI-like, autoregulated | RecName: Full=Antitoxin MazE; | chromosome | CDS | 3700788 | 249 | - | 0.485944 |
| chpS | Z5835 | suppressor of inhibitory function of ChpB, PemI-like, autoregulated | SubName: Full=Suppressor of inhibitory function of ChpB; SubName: Full=Suppressor of inhibitory function of ChpB, PemI-like, autoregulated; | chromosome | CDS | 5333907 | 258 | + | 0.507752 |
| citA | Z0764 | putative sensor-type protein | SubName: Full=Putative sensor-type protein; | chromosome | CDS | 733372 | 1659 | + | 0.499699 |
| citB | Z0765 | sequence similarity to Shigella regulator | RecName: Full=Transcriptional regulatory protein DpiA; AltName: Full=Destabilizer of plasmid inheritance; | chromosome | CDS | 734999 | 681 | + | 0.506608 |
| cmtB | Z4278 | PTS system, mannitol-specific enzyme II component, cryptic | RecName: Full=Mannitol-specific cryptic phosphotransferase enzyme IIA component; EC=2.7.1.-; AltName: Full=EIIA-Mtl; AltName: Full=EIII-Mtl; AltName: Full=PTS system mannitol-specific EIIA component; | chromosome | CDS | 3886806 | 444 | - | 0.425676 |
| cpxA | Z5456 | probable sensor protein (histidine protein kinase), acting on arcA | RecName: Full=Sensor protein CpxA; EC=2.7.13.3; | chromosome | CDS | 4972326 | 1374 | - | 0.545124 |
| cpxR | Z5457 | transcriptional regulator in 2-component system | RecName: Full=Transcriptional regulatory protein CpxR; | chromosome | CDS | 4973696 | 699 | - | 0.516452 |
| creB | Z6001 | catabolic regulation response regulator | SubName: Full=Catabolic regulation response regulator; | chromosome | CDS | 5522800 | 690 | + | 0.552174 |
| creC | Z6002 | catabolite repression sensor kinase for PhoB; alternative sensor for pho regulon | SubName: Full=Catabolite repression sensor kinase for PhoB alternative sensor for pho regulon; | chromosome | CDS | 5523489 | 1425 | + | 0.542456 |
| crp | Z4718 | cyclic AMP receptor protein | RecName: Full=cAMP-activated global transcriptional regulator CRP; AltName: Full=Catabolite activator protein; Short=CAP; AltName: Full=Catabolite gene activator; AltName: Full=cAMP receptor protein; Short=CRP; AltName: Full=cAMP regulatory protein; | chromosome | CDS | 4273248 | 633 | + | 0.496051 |
| csrA | Z3998 | carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties | RecName: Full=Carbon storage regulator; | chromosome | CDS | 3610180 | 186 | - | 0.494624 |
| cstA | Z0740 | carbon starvation protein | SubName: Full=Carbon starvation protein; | chromosome | CDS | 711146 | 2106 | + | 0.567901 |
| dksA | Z0156 | dnaK suppressor protein | RecName: Full=RNA polymerase-binding transcription factor DksA; | chromosome | CDS | 164472 | 456 | - | 0.52193 |
| envZ | Z4759 | protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompC | SubName: Full=Protein histidine kinase/phosphatase EnvZ; SubName: Full=Protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompC; | chromosome | CDS | 4313932 | 1353 | - | 0.569106 |
| espB | Z5105 | secreted protein EspB | SubName: Full=EspB; SubName: Full=EspB protein; SubName: Full=Secreted protein EspB; | chromosome | CDS | 4660026 | 939 | - | 0.474973 |
| evgA | Z3631 | putative positive transcription regulator (sensor EvgS) | RecName: Full=Positive transcription regulator EvgA; | chromosome | CDS | 3281851 | 615 | + | 0.4 |
| evgS | Z3632 | putative sensor for regulator EvgA | RecName: Full=Sensor protein EvgS; EC=2.7.13.3; Flags: Precursor; | chromosome | CDS | 3282470 | 3594 | + | 0.409293 |
| fhlA | Z4040 | formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons | SubName: Full=Formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons; SubName: Full=Formate hydrogenlyase activator protein; | chromosome | CDS | 3645320 | 2079 | + | 0.521405 |
| fimZ | Z0693 | fimbrial Z protein; probable signal transducer | RecName: Full=Fimbriae Z protein; | chromosome | CDS | 656001 | 696 | - | 0.37069 |
| fliY | Z3010 | putative periplasmic binding transport protein | SubName: Full=Putative periplasmic binding transport protein; | chromosome | CDS | 2697067 | 801 | - | 0.49563 |
| fnr | Z2433 | transcriptional regulation of aerobic, anaerobic respiration, osmotic balance | RecName: Full=Fumarate and nitrate reduction regulatory protein; | chromosome | CDS | 2179481 | 753 | + | 0.513944 |
| frvA | Z5443 | PTS system, fructose-specific IIA component | SubName: Full=Fructose-specific PTS system enzyme IIA component; SubName: Full=PTS system, fructose-specific IIA component; | chromosome | CDS | 4959765 | 447 | - | 0.503356 |
| gatA | Z3257 | galactitol-specific enzyme IIA of phosphotransferase system | RecName: Full=Galactitol-specific phosphotransferase enzyme IIA component; EC=2.7.1.-; AltName: Full=EIIA-Gat; AltName: Full=PTS system galactitol-specific EIIA component; | chromosome | CDS | 2918357 | 453 | - | 0.421634 |
| glnE | Z4406 | adenylylating enzyme for glutamine synthetase | RecName: Full=Glutamate-ammonia-ligase adenylyltransferase; EC=2.7.7.42; AltName: Full=Glutamine-synthetase adenylyltransferase; Short=ATase; AltName: Full=[Glutamate--ammonia-ligase] adenylyltransferase; | chromosome | CDS | 4003644 | 2841 | - | 0.560366 |
| glnG | Z5404 | response regulator for gln (sensor glnL) (nitrogen regulator I, NRI) | RecName: Full=Nitrogen regulation protein NR(I); | chromosome | CDS | 4918544 | 1410 | - | 0.566667 |
| glnH | Z1033 | periplasmic glutamine-binding protein; permease | RecName: Full=Glutamine-binding periplasmic protein; Short=GlnBP; Flags: Precursor; | chromosome | CDS | 973220 | 747 | - | 0.491299 |
| glnL | Z5405 | histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII) | RecName: Full=Nitrogen regulation protein NR(II); EC=2.7.13.3; | chromosome | CDS | 4919965 | 1050 | - | 0.545714 |
| hisJ | Z3571 | histidine-binding periplasmic protein of high-affinity histidine transport system | RecName: Full=Histidine-binding periplasmic protein; Short=HBP; Flags: Precursor; | chromosome | CDS | 3222132 | 783 | - | 0.485313 |
| hnr | Z2011 | Hnr protein | RecName: Full=Regulator of RpoS; | chromosome | CDS | 1827223 | 1014 | + | 0.488166 |
| hydG | Z5580 | response regulator of hydrogenase 3 activity (sensor HydH) | RecName: Full=Transcriptional regulatory protein ZraR; | chromosome | CDS | 5080870 | 1326 | + | 0.56184 |
| hydH | Z5579 | sensor kinase for HydG, hydrogenase 3 activity | RecName: Full=Sensor protein ZraS; EC=2.7.13.3; | chromosome | CDS | 5079497 | 1377 | + | 0.544662 |
| hyfR | Z3751 | putative 2-component regulator, interaction with sigma 54 | SubName: Full=Putative 2-component regulator, interaction with sigma 54; | chromosome | CDS | 3397877 | 2040 | + | 0.526961 |
| kdpD | Z0842 | sensor for high-affinity potassium transport system | SubName: Full=Sensor for high-affinity potassium transport system; | chromosome | CDS | 799940 | 2685 | - | 0.577654 |
| kdpE | Z0841 | regulator of kdp operon (transcriptional effector) | SubName: Full=Regulator of kdp operon (Transcriptional effector); SubName: Full=Transcriptional regulator of kdp operon; | chromosome | CDS | 799266 | 678 | - | 0.564897 |
| lexA | Z5642 | regulator for SOS(lexA) regulon | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 5140283 | 609 | + | 0.522168 |
| narL | Z1996 | pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes | RecName: Full=Nitrate/nitrite response regulator protein NarL; | chromosome | CDS | 1812461 | 651 | - | 0.519201 |
| narP | Z3450 | nitrate/nitrite response regulator (sensor NarQ) | SubName: Full=Nitrate/nitrite response regulator (Sensor NarQ); SubName: Full=Nitrate/nitrite response regulator NarP; | chromosome | CDS | 3095498 | 648 | + | 0.520062 |
| narQ | Z3726 | sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL) | SubName: Full=Sensor for nitrate reductase system, protein histidine kinase (Acts on NarP and narL); | chromosome | CDS | 3371689 | 1701 | + | 0.516167 |
| narX | Z1998 | nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator | RecName: Full=Nitrate/nitrite sensor protein NarX; EC=2.7.13.3; | chromosome | CDS | 1813104 | 1797 | - | 0.533667 |
| nrfB | Z5670 | formate-dependent nitrite reductase; a penta-haeme cytochrome c | SubName: Full=Formate-dependent nitrite reductase NrfB; SubName: Full=Formate-dependent nitrite reductase a penta-haeme cytochrome c; | chromosome | CDS | 5172373 | 573 | + | 0.542757 |
| ompR | Z4760 | response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis | RecName: Full=Transcriptional regulatory protein OmpR; | chromosome | CDS | 4315281 | 720 | - | 0.548611 |
| phoB | Z0497 | positive response regulator for pho regulon, sensor is PhoR (or CreC) | RecName: Full=Phosphate regulon transcriptional regulatory protein PhoB; | chromosome | CDS | 479125 | 690 | + | 0.543478 |
| phoH | Z1522 | PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvation | RecName: Full=Protein PhoH; AltName: Full=Phosphate starvation-inducible protein PsiH; | chromosome | CDS | 1411715 | 1065 | + | 0.519249 |
| phoP | Z1859 | transcriptional regulatory protein | RecName: Full=Transcriptional regulatory protein PhoP; | chromosome | CDS | 1695474 | 672 | - | 0.473214 |
| phoQ | Z1858 | sensor protein PhoQ | RecName: Full=Sensor protein PhoQ; EC=2.7.13.3; EC=3.1.3.-; AltName: Full=Sensor histidine protein kinase/phosphatase PhoQ; | chromosome | CDS | 1694014 | 1383 | - | 0.510484 |
| phoR | Z0498 | positive and negative sensor protein for pho regulon | SubName: Full=Positive and negative sensor protein for pho regulon; SubName: Full=Positive and negative sensor protein for pho regulon PhoR; | chromosome | CDS | 479872 | 1296 | + | 0.532407 |
| pphA | Z2885 | protein phosphatase 1 modulates phosphoproteins, signals protein misfolding | SubName: Full=Phosphoprotein phosphatase 1; SubName: Full=Protein phosphatase 1 modulates phosphoproteins, signals protein misfolding; | chromosome | CDS | 2599351 | 660 | - | 0.480303 |
| pphB | Z4044 | protein phosphatase 2 | SubName: Full=Protein phosphatase 2; | chromosome | CDS | 3650742 | 657 | + | 0.423135 |
| proQ | Z2878 | ProQ protein that influences osmotic activation of ProP | RecName: Full=ProP effector; | chromosome | CDS | 2591873 | 120 | - | 0.525 |
| prpR | Z0426 | regulator for prp operon | SubName: Full=Regulator for prp operon; | chromosome | CDS | 403558 | 1587 | - | 0.552615 |
| pspA | Z2482 | phage shock protein, putative inner membrane protein | RecName: Full=Phage shock protein A; | chromosome | CDS | 2210603 | 669 | - | 0.496263 |
| pspC | Z2479 | phage shock protein: activates phage shock-protein expression | RecName: Full=Phage shock protein C; | chromosome | CDS | 2209966 | 360 | - | 0.494444 |
| pspF | Z2484 | psp operon transcriptional activator | SubName: Full=Psp operon transcriptional activator; | chromosome | CDS | 2211423 | 993 | + | 0.520644 |
| ptsA | Z5502 | PEP-protein phosphotransferase system enzyme I | SubName: Full=PEP-protein phosphotransferase system enzyme I; | chromosome | CDS | 5015368 | 2136 | - | 0.550562 |
| ptsN | Z4567 | phosphotransferase system enzyme IIA, regulates N metabolism | SubName: Full=Phosphotransferase system enzyme IIA; SubName: Full=Phosphotransferase system enzyme IIA, regulates N metabolism; | chromosome | CDS | 4156147 | 492 | + | 0.51626 |
| ptsP | Z4146 | PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) | SubName: Full=PTS system transcriptional regulator enzyme I; SubName: Full=PTS system, enzyme I, transcriptional regulator (With NPR and NTR proteins); | chromosome | CDS | 3755886 | 2247 | - | 0.538496 |
| ptxA | Z5804 | putative PTS system enzyme II A component | RecName: Full=Ascorbate-specific phosphotransferase enzyme IIA component; EC=2.7.1.-; AltName: Full=PTS system ascorbate-specific EIIA component; | chromosome | CDS | 5305421 | 465 | + | 0.535484 |
| qseB | Z4377 | quorum sensing Escherichia coli regulator B | RecName: Full=Transcriptional regulatory protein QseB; | chromosome | CDS | 3976571 | 660 | + | 0.516667 |
| qseC | Z4378 | quorum sensing Escherichia coli regulator C | RecName: Full=Sensor protein QseC; EC=2.7.13.3; | chromosome | CDS | 3977227 | 1350 | + | 0.526667 |
| rcsB | Z3476 | positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) | RecName: Full=Transcriptional regulatory protein RcsB; | chromosome | CDS | 3120433 | 651 | + | 0.470046 |
| rcsC | Z3477 | sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB | SubName: Full=Sensor for ctr capsule biosynthesis; SubName: Full=Sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB; | chromosome | CDS | 3121283 | 2802 | - | 0.509636 |
| relA | Z4099 | (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor | RecName: Full=GTP pyrophosphokinase; EC=2.7.6.5; AltName: Full=(p)ppGpp synthase; AltName: Full=ATP:GTP 3-pyrophosphotransferase; AltName: Full=ppGpp synthase I; | chromosome | CDS | 3701114 | 2235 | - | 0.536913 |
| rseA | Z3854 | sigma-E factor, negative regulatory protein | RecName: Full=Anti-sigma-E factor RseA; AltName: Full=Regulator of SigE; AltName: Full=Sigma-E anti-sigma factor RseA; AltName: Full=Sigma-E factor negative regulatory protein; | chromosome | CDS | 3498978 | 639 | - | 0.519562 |
| rseB | Z3853 | regulates activity of sigma-E factor | RecName: Full=Sigma-E factor regulatory protein RseB; Flags: Precursor; | chromosome | CDS | 3498022 | 957 | - | 0.507837 |
| rseC | Z3852 | sigma-E factor, negative regulatory protein | SubName: Full=Sigma-E factor regulatory protein RseC; SubName: Full=Sigma-E factor, negative regulatory protein; | chromosome | CDS | 3497546 | 480 | - | 0.55625 |
| rstA | Z2609 | response transcriptional regulatory protein (RstB sensor) | SubName: Full=Response transcriptional regulatory protein (RstB sensor); SubName: Full=Response transcriptional regulatory protein RstB sensor; | chromosome | CDS | 2357237 | 729 | + | 0.491084 |
| rstB | Z2610 | sensor histidine protein kinase (RstA regulator) | SubName: Full=Sensor histidine protein kinase (RstA regulator); | chromosome | CDS | 2357969 | 1302 | + | 0.50384 |
| rtcR | Z4780 | putative 2-component regulator | SubName: Full=Putative 2-component regulator; | chromosome | CDS | 4338437 | 1599 | + | 0.547217 |
| rtn | Z3435 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3076925 | 1557 | + | 0.506101 |
| spoT | Z5076 | (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | RecName: Full=Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; EC=3.1.7.2; AltName: Full=Penta-phosphate guanosine-3-pyrophosphohydrolase; Short=(ppGpp)ase; | chromosome | CDS | 4635245 | 2109 | + | 0.539592 |
| spy | Z2775 | periplasmic protein related to spheroblast formation | SubName: Full=Periplasmic protein related to spheroblast formation; SubName: Full=Spheroplast protein Y; | chromosome | CDS | 2499855 | 486 | - | 0.506173 |
| tap | Z2939 | methyl-accepting chemotaxis protein IV, peptide sensor receptor | SubName: Full=Methyl-accepting chemotaxis protein IV; SubName: Full=Methyl-accepting chemotaxis protein IV, peptide sensor receptor; | chromosome | CDS | 2646524 | 1602 | - | 0.536829 |
| tar | Z2940 | methyl-accepting chemotaxis protein II, aspartate sensor receptor | SubName: Full=Methyl-accepting chemotaxis protein II, aspartate sensor receptor; | chromosome | CDS | 2648171 | 1662 | - | 0.523466 |
| terD | Z1175 | putative phage inhibition, colicin resistance and tellurite resistance protein | SubName: Full=Putative phage inhibition, colicin resistance and tellurite resistance protein; SubName: Full=Putative tellurium resistance protein TerD; | chromosome | CDS | 1103991 | 579 | + | 0.531952 |
| terD_2 | Z1614 | putative phage inhibition, colicin resistance and tellurite resistance protein | SubName: Full=Putative phage inhibition, colicin resistance and tellurite resistance protein; SubName: Full=Putative tellurium resistance protein TerD; | chromosome | CDS | 1499598 | 579 | + | 0.531952 |
| terE | Z1176 | putative phage inhibition, colicin resistance and tellurite resistance protein | SubName: Full=Putative phage inhibition, colicin resistance and tellurite resistance protein; SubName: Full=Putative tellurium resistance TerE; SubName: Full=Putative tellurium resistance protein B; | chromosome | CDS | 1104638 | 576 | + | 0.506944 |
| terE_2 | Z1615 | putative phage inhibition, colicin resistance and tellurite resistance protein | SubName: Full=Putative phage inhibition, colicin resistance and tellurite resistance protein; SubName: Full=Putative tellurium resistance TerE; SubName: Full=Putative tellurium resistance protein B; | chromosome | CDS | 1500245 | 576 | + | 0.506944 |
| terF | Z1177 | partial putative phage inhibition, colicin resistance and tellurite resistance protein | SubName: Full=Partial putative phage inhibition, colicin resistance and tellurite resistance protein; SubName: Full=Putative tellurium resistance protein A; SubName: Full=Putative tellurium resistance protein TerF; | chromosome | CDS | 1105635 | 309 | + | 0.469256 |
| terF_2 | Z1616 | partial putative phage inhibition, colicin resistance and tellurite resistance protein | SubName: Full=Partial putative phage inhibition, colicin resistance and tellurite resistance protein; SubName: Full=Putative tellurium resistance protein A; SubName: Full=Putative tellurium resistance protein TerF; | chromosome | CDS | 1501242 | 309 | + | 0.469256 |
| terZ | Z1171 | putative phage inhibition, colicin resistance and tellurite resistance protein | SubName: Full=Putative phage inhibition, colicin resistance and tellurite resistance protein; SubName: Full=Putative tellurium resistance protein TerZ; | chromosome | CDS | 1100663 | 582 | + | 0.505155 |
| terZ_2 | Z1610 | putative phage inhibition, colicin resistance and tellurite resistance protein | SubName: Full=Putative phage inhibition, colicin resistance and tellurite resistance protein; SubName: Full=Putative tellurium resistance protein TerZ; | chromosome | CDS | 1496270 | 582 | + | 0.505155 |
| torR | Z1412 | response transcriptional regulator for torA (sensor TorS) | RecName: Full=TorCAD operon transcriptional regulatory protein TorR; | chromosome | CDS | 1320432 | 693 | - | 0.531025 |
| torS | Z1410 | sensor protein torS (regulator TorR) | RecName: Full=Sensor protein TorS; EC=2.7.13.3; | chromosome | CDS | 1316604 | 2715 | - | 0.544383 |
| trg | Z2300 | methyl-accepting chemotaxis protein III, ribose sensor receptor | SubName: Full=Methyl-accepting chemotaxis protein III; SubName: Full=Methyl-accepting chemotaxis protein III, ribose sensor receptor; | chromosome | CDS | 2076859 | 1641 | - | 0.511274 |
| tsr | Z5955 | methyl-accepting chemotaxis protein I, serine sensor receptor | SubName: Full=Methyl-accepting chemotaxis protein I, serine sensor receptor; | chromosome | CDS | 5480000 | 1665 | + | 0.539339 |
| uhpA | Z5159 | response regulator, positive activator of uhpT transcription (sensor, uhpB) | RecName: Full=Transcriptional regulatory protein UhpA; | chromosome | CDS | 4706251 | 591 | - | 0.580372 |
| uhpB | Z5158 | sensor histidine protein kinase phosphorylates UhpA | SubName: Full=Sensor histidine protein kinase phosphorylates UhpA; | chromosome | CDS | 4704749 | 1506 | - | 0.571713 |
| umuD | Z1946 | SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC | RecName: Full=Protein UmuD; EC=3.4.21.-; Contains: RecName: Full=Protein UmuD; | chromosome | CDS | 1763660 | 420 | + | 0.483333 |
| uspA | Z4895 | universal stress protein; broad regulatory function? | RecName: Full=Universal stress protein A; | chromosome | CDS | 4441648 | 435 | + | 0.485057 |
| uvrY | Z3002 | putative 2-component transcriptional regulator | RecName: Full=Response regulator UvrY; | chromosome | CDS | 2692185 | 657 | - | 0.497717 |
| waaP | Z5054 | putative LPS biosynthesis enzyme | SubName: Full=Lipopolysaccharide core biosynthesis protein RfaP; SubName: Full=Putative LPS biosynthesis enzyme; | chromosome | CDS | 4618000 | 807 | - | 0.473358 |
| waaY | Z5052 | putative LPS biosynthesis protein | SubName: Full=Lipopolysaccharide core biosynthesis protein WaaY; SubName: Full=Putative LPS biosynthesis protein; | chromosome | CDS | 4616217 | 708 | - | 0.30791 |
| wzb | Z3226 | probable protein-tyrosine-phosphatase | RecName: Full=Low molecular weight protein-tyrosine-phosphatase wzb; EC=3.1.3.48; | chromosome | CDS | 2881244 | 444 | - | 0.545045 |
| yaeG | Z0174 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 186645 | 1176 | + | 0.527211 |
| yahA | Z0403 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 383852 | 1098 | + | 0.458106 |
| yaiC | Z0481 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 463484 | 1116 | + | 0.53853 |
| ybcZ | Z0708 | putative 2-component sensor protein | RecName: Full=Sensor kinase CusS; EC=2.7.13.3; | chromosome | CDS | 675764 | 1449 | - | 0.52795 |
| ybdQ | Z0751 | orf, hypothetical protein | RecName: Full=Universal stress protein G; | chromosome | CDS | 722575 | 429 | - | 0.491841 |
| ybeJ | Z0805 | putative periplasmic binding transport protein | SubName: Full=Putative periplasmic binding transport protein; | chromosome | CDS | 767980 | 909 | - | 0.487349 |
| ybeS | Z0795 | putative enzyme of polynucleotide modification | SubName: Full=Putative enzyme of polynucleotide modification; | chromosome | CDS | 758556 | 1428 | + | 0.471289 |
| ybeZ | Z0809 | putative ATP-binding protein in pho regulon | RecName: Full=PhoH-like protein; | chromosome | CDS | 772280 | 1080 | - | 0.540741 |
| ybiI | Z1024 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 964285 | 267 | - | 0.505618 |
| yccY | Z1399 | putative phosphatase | RecName: Full=Low molecular weight protein-tyrosine-phosphatase etp; EC=3.1.3.48; | chromosome | CDS | 1308178 | 459 | - | 0.520697 |
| ycdT | Z1527 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1419599 | 1359 | + | 0.385578 |
| yciR | Z2516 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2239726 | 1986 | + | 0.483887 |
| ydaA | Z2435 | orf, hypothetical protein | RecName: Full=Universal stress protein E; | chromosome | CDS | 2180385 | 951 | + | 0.50368 |
| ydeH | Z2163 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1938726 | 891 | + | 0.444444 |
| yeaG | Z2823 | RecName: Full=Uncharacterized protein YeaG; | chromosome | CDS | 2543716 | 1935 | + | 0.499225 | |
| yeaI | Z2825 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2547334 | 1335 | + | 0.389513 |
| yecG | Z2948 | putative regulator | RecName: Full=Universal stress protein C; | chromosome | CDS | 2656116 | 429 | + | 0.452214 |
| yedV | Z3060 | putative 2-component sensor protein | SubName: Full=Putative 2-component sensor protein; | chromosome | CDS | 2736547 | 1359 | - | 0.399558 |
| yedW | Z3061 | putative 2-component transcriptional regulator | SubName: Full=Putative 2-component transcriptional regulator; | chromosome | CDS | 2737905 | 720 | - | 0.434722 |
| yehT | Z3302 | orf, hypothetical protein | RecName: Full=Transcriptional regulatory protein YehT; | chromosome | CDS | 2963466 | 735 | - | 0.49932 |
| yehU | Z3303 | putative 2-component sensor protein | SubName: Full=Putative 2-component sensor protein; | chromosome | CDS | 2964182 | 1686 | - | 0.50949 |
| yeiL | Z3420 | putative transcriptional regulator | RecName: Full=Regulatory protein YeiL; | chromosome | CDS | 3061551 | 660 | + | 0.437879 |
| yfeA | Z3660 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3312387 | 2229 | - | 0.489457 |
| yfhA | Z3830 | putative 2-component transcriptional regulator | RecName: Full=Transcriptional regulatory protein QseF; AltName: Full=Quorum-sensing regulator protein F; | chromosome | CDS | 3477673 | 1335 | - | 0.542322 |
| yfhK | Z3833 | putative 2-component sensor protein | RecName: Full=Sensor histidine kinase QseE; EC=2.7.13.3; AltName: Full=Quorum-sensing regulator protein E; | chromosome | CDS | 3479875 | 1491 | - | 0.52448 |
| yfiN | Z3898 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3532351 | 1227 | + | 0.485738 |
| ygaA | Z4017 | putative 2-component transcriptional regulator | RecName: Full=Anaerobic nitric oxide reductase transcription regulator NorR; | chromosome | CDS | 3621996 | 1590 | - | 0.563522 |
| ygaG | Z3988 | orf, hypothetical protein | RecName: Full=S-ribosylhomocysteine lyase; EC=4.4.1.21; AltName: Full=AI-2 synthesis protein; AltName: Full=Autoinducer-2 production protein LuxS; | chromosome | CDS | 3605666 | 516 | - | 0.515504 |
| ygeV | Z4208 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3809645 | 1779 | - | 0.458123 |
| ygiM | Z4408 | orf, hypothetical protein | RecName: Full=Uncharacterized protein YgiM; Flags: Precursor; | chromosome | CDS | 4008050 | 621 | + | 0.52496 |
| yhaC | Z4473 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4075260 | 1188 | + | 0.308923 |
| yhdA | Z4611 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4203570 | 1941 | - | 0.505925 |
| yhdW | Z4629 | putative periplasmic binding transport protein | RecName: Full=Putative amino-acid ABC transporter-binding protein YhdW; Flags: Precursor; | chromosome | CDS | 4221372 | 918 | + | 0.491285 |
| yhjB | Z4933 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 4480656 | 603 | - | 0.477612 |
| yhjH | Z4939 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4487785 | 768 | - | 0.526042 |
| yhjK | Z4943 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4492995 | 1956 | - | 0.519939 |
| yihK | Z5407 | putative GTP-binding factor | RecName: Full=GTP-binding protein TypA/BipA; AltName: Full=Tyrosine phosphorylated protein A; | chromosome | CDS | 4922970 | 1824 | + | 0.534539 |
| yiiO | Z5458 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4974541 | 504 | + | 0.498016 | |
| yiiT | Z5468 | putative regulator | RecName: Full=Universal stress protein D; | chromosome | CDS | 4982016 | 429 | + | 0.431235 |
| yjaI | Z5578 | orf, hypothetical protein | RecName: Full=Zinc resistance-associated protein; Flags: Precursor; | chromosome | CDS | 5078834 | 567 | - | 0.516755 |
| yjcC | Z5660 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 5158602 | 1587 | + | 0.446755 |
| yjdG | Z5726 | putative 2-component transcriptional regulator | RecName: Full=Transcriptional regulatory protein DcuR; | chromosome | CDS | 5233750 | 720 | - | 0.494444 |
| yjdH | Z5727 | putative 2-component sensor protein | RecName: Full=Sensor histidine kinase DcuS; EC=2.7.13.3; | chromosome | CDS | 5234466 | 1632 | - | 0.502451 |
| yjfJ | Z5789 | putative alpha helical protein | SubName: Full=Putative alpha helical protein; | chromosome | CDS | 5294266 | 699 | + | 0.507868 |
| yjiY | Z5953 | putative carbon starvation protein | SubName: Full=Putative carbon starvation protein; | chromosome | CDS | 5476786 | 2166 | - | 0.561404 |
| yjjQ | Z5966 | putative regulator | RecName: Full=Uncharacterized protein YjjQ; | chromosome | CDS | 5491831 | 726 | + | 0.447658 |
| ylaB | Z0569 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 543135 | 1557 | - | 0.479127 |
| ylcA | Z0709 | putative 2-component transcriptional regulator | RecName: Full=Transcriptional regulatory protein CusR; | chromosome | CDS | 677202 | 684 | - | 0.548246 |
| ynaF | Z2335 | RecName: Full=Universal stress protein F; | chromosome | CDS | 2115267 | 507 | + | 0.475345 | |
| ynbD | Z2316 | putative enzymes | SubName: Full=Putative enzymes; | chromosome | CDS | 2090444 | 1293 | - | 0.500387 |
| yojN | Z3475 | putative 2-component sensor protein | SubName: Full=Putative 2-component sensor protein; | chromosome | CDS | 3117744 | 2673 | + | 0.494201 |
| yqeH | Z4166 | orf, hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3777176 | 693 | + | 0.369408 |
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