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2024-05-03 00:44:41

Gene list

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COG category: Signal transduction mechanisms
Organism: Escherichia coli O157:H7 EDL933, EDL933

Number of genes found: 210

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli O157:H7 EDL933, EDL933
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Z3766 putative cytochrome C-type biogenesis proteinchromosome CDS3412673 2244 - 0.464795
NA Z5684 putative transcriptional regulatorchromosome CDS5189540 726 + 0.548209
NA Z0309 putative cI repressor protein for prophage CP-933Hchromosome CDS301940 714 - 0.462185
NA Z0954 unknown protein encoded by prophage CP-933Kchromosome CDS898894 432 + 0.451389
NA Z1478 unknown protein encoded by bacteriophage BP-933Wchromosome CDS1364398 1008 + 0.531746
NA Z3126 putative repressor protein of prophage CP-933Uchromosome CDS2782567 591 + 0.431472
NA Z2220 putative sensor kinasechromosome CDS2001483 1266 + 0.509479
NA Z4176 putative 2-component transcriptional regulatorchromosome CDS3784402 447 - 0.360179
NA Z3645 putative sensor proteinchromosome CDS3296765 1698 + 0.507656
NA Z1444 putative serine/threonine kinase encoded by bacteriophage BP-933Wchromosome CDS1340932 1047 - 0.354346
NA Z2879 orf, hypothetical proteinchromosome CDS2592668 552 - 0.481884
NA Z2836 chromosome CDS2554523 849 + 0.487633
NA Z2182 orf, hypothetical proteinchromosome CDS1952706 948 + 0.503165
NA Z4875 putative phosphotransferase system enzyme subunitchromosome CDS4421785 474 + 0.495781
NA Z2421 orf, hypothetical proteinchromosome CDS2169839 1293 + 0.470998
NA Z3236 partial putative sensor kinasechromosome CDS2889841 2808 + 0.523148
NA Z3235 partial putative sensor kinasechromosome CDS2889330 534 + 0.543071
NA Z2736 orf, hypothetical proteinchromosome CDS2466222 714 - 0.421569
NA Z3646 putative 2-component transcriptional regulatorchromosome CDS3298477 735 + 0.472109
NA Z1491 unknown protein encoded by bacteriophage BP-933Wchromosome CDS1377180 657 + 0.531202
NA Z1057 orf, hypothetical proteinchromosome CDS998971 2349 + 0.416347
NA Z2221 chromosome CDS2002793 1104 + 0.496377
NA Z0258 chromosome CDS256527 1302 - 0.56682
NA Z6021 orf, hypothetical proteinchromosome CDS2281573 912 - 0.379386
NA Z3603 orf, hypothetical proteinchromosome CDS3252698 486 - 0.534979
NA Z0326 unknown protein encoded in prophage CP-933Ichromosome CDS312381 618 + 0.305825
NA Z2090 putative repressor protein encoded within prophage CP-933Ochromosome CDS1882915 639 - 0.43662
NA Z5693 chromosome CDS5198532 177 + 0.615819
NA Z3047 orf, hypothetical proteinchromosome CDS2726082 1695 - 0.514454
NA Z0462 putative sensor kinase; hexosephosphate transportchromosome CDS443763 1542 - 0.536965
NA Z3933 unknown protein encoded by prophage CP-933Ychromosome CDS3555705 666 - 0.45045
NA Z1772 unknown protein encoded by prophage CP-933Nchromosome CDS1630668 426 + 0.528169
NA Z0463 putative response regulator; hexosephosphate transportchromosome CDS445304 630 - 0.538095
NA Z2092 unknown protein encoded within prophage CP-933Ochromosome CDS1883871 426 + 0.530516
NA Z1528 chromosome CDS1421055 1611 + 0.366853
NA Z2219 orf, hypothetical proteinchromosome CDS2000100 1383 + 0.445409
NA Z2858 orf, hypothetical proteinchromosome CDS2575430 1629 + 0.50399
NA Z1058 orf, hypothetical proteinchromosome CDS1001327 1329 + 0.434913
NA Z3358 putative repressor protein CI of prophage CP-933Vchromosome CDS3004015 648 + 0.521605
NA Z1467 unknown protein encoded by bacteriophage BP-933Wchromosome CDS1356135 447 + 0.53915
NA Z5692 putative histidine kinasechromosome CDS5196438 2271 + 0.575077
'yeaJ Z2826 chromosome CDS2548849 1491 + 0.458753
aceK Z5602 isocitrate dehydrogenase kinase/phosphatasechromosome CDS5095741 1737 + 0.527922
aer Z4425 aerotaxis sensor receptor, flavoproteinchromosome CDS4024402 1521 - 0.554241
apaH Z0058 diadenosine tetraphosphatasechromosome CDS55350 849 - 0.559482
arcA Z6004 negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA)chromosome CDS5526383 717 - 0.509066
arcB Z4574 aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcAchromosome CDS4160259 2337 - 0.504493
argT Z3572 lysine-, arginine-, ornithine-binding periplasmic proteinchromosome CDS3223135 783 - 0.510856
artI Z1093 arginine 3rd transport system periplasmic binding proteinchromosome CDS1032513 732 - 0.491803
artJ Z1090 arginine 3rd transport system periplasmic binding proteinchromosome CDS1030100 783 - 0.469987
baeR Z3248 transcriptional response regulatory protein (sensor BaeS)chromosome CDS2909928 723 + 0.538036
baeS Z3247 sensor protein (for BaeR)chromosome CDS2908528 1404 + 0.539174
barA Z4101 sensor-regulator, activates OmpR by phophorylationchromosome CDS3704754 2757 + 0.49728
basR Z5715 transcriptional regulatory protein, member of 2-component regulatory system,chromosome CDS5217716 669 - 0.532138
basS Z5714 sensor protein for basRchromosome CDS5216615 1092 - 0.545788
bglJ Z5967 2-component transcriptional regulatorchromosome CDS5492514 678 + 0.454277
bolA Z0539 possible regulator of murein geneschromosome CDS520494 351 + 0.481481
cheA Z2942 sensory transducer kinase between chemo-signal receptors and CheB and CheYchromosome CDS2650499 1965 - 0.53028
cheB Z2937 response regulator for chemotaxis (cheA sensor); protein methylesterasechromosome CDS2644593 1050 - 0.539048
cheR Z2938 response regulator for chemotaxis; protein glutamate methyltransferasechromosome CDS2645645 861 - 0.54007
cheW Z2941 positive regulator of CheA protein activitychromosome CDS2649975 504 - 0.511905
cheY Z2936 chemotaxis regulator transmits chemoreceptor signals to flagelllar motor componentschromosome CDS2644189 390 - 0.494872
cheZ Z2935 chemotactic response; CheY protein phophatase; antagonist of CheY as switch regulatorchromosome CDS2643534 645 - 0.534884
chpA Z4097 probable growth inhibitor, PemK-like, autoregulatedchromosome CDS3700453 336 - 0.473214
chpB Z5836 probable growth inhibitor, PemK-like, autoregulatedchromosome CDS5334158 351 + 0.535613
chpR Z4098 suppressor of inhibitory function of ChpA, PemI-like, autoregulatedchromosome CDS3700788 249 - 0.485944
chpS Z5835 suppressor of inhibitory function of ChpB, PemI-like, autoregulatedchromosome CDS5333907 258 + 0.507752
citA Z0764 putative sensor-type proteinchromosome CDS733372 1659 + 0.499699
citB Z0765 sequence similarity to Shigella regulatorchromosome CDS734999 681 + 0.506608
cmtB Z4278 PTS system, mannitol-specific enzyme II component, crypticchromosome CDS3886806 444 - 0.425676
cpxA Z5456 probable sensor protein (histidine protein kinase), acting on arcAchromosome CDS4972326 1374 - 0.545124
cpxR Z5457 transcriptional regulator in 2-component systemchromosome CDS4973696 699 - 0.516452
creB Z6001 catabolic regulation response regulatorchromosome CDS5522800 690 + 0.552174
creC Z6002 catabolite repression sensor kinase for PhoB; alternative sensor for pho regulonchromosome CDS5523489 1425 + 0.542456
crp Z4718 cyclic AMP receptor proteinchromosome CDS4273248 633 + 0.496051
csrA Z3998 carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface propertieschromosome CDS3610180 186 - 0.494624
cstA Z0740 carbon starvation proteinchromosome CDS711146 2106 + 0.567901
dksA Z0156 dnaK suppressor proteinchromosome CDS164472 456 - 0.52193
envZ Z4759 protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompCchromosome CDS4313932 1353 - 0.569106
espB Z5105 secreted protein EspBchromosome CDS4660026 939 - 0.474973
evgA Z3631 putative positive transcription regulator (sensor EvgS)chromosome CDS3281851 615 + 0.4
evgS Z3632 putative sensor for regulator EvgAchromosome CDS3282470 3594 + 0.409293
fhlA Z4040 formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operonschromosome CDS3645320 2079 + 0.521405
fimZ Z0693 fimbrial Z protein; probable signal transducerchromosome CDS656001 696 - 0.37069
fliY Z3010 putative periplasmic binding transport proteinchromosome CDS2697067 801 - 0.49563
fnr Z2433 transcriptional regulation of aerobic, anaerobic respiration, osmotic balancechromosome CDS2179481 753 + 0.513944
frvA Z5443 PTS system, fructose-specific IIA componentchromosome CDS4959765 447 - 0.503356
gatA Z3257 galactitol-specific enzyme IIA of phosphotransferase systemchromosome CDS2918357 453 - 0.421634
glnE Z4406 adenylylating enzyme for glutamine synthetasechromosome CDS4003644 2841 - 0.560366
glnG Z5404 response regulator for gln (sensor glnL) (nitrogen regulator I, NRI)chromosome CDS4918544 1410 - 0.566667
glnH Z1033 periplasmic glutamine-binding protein; permeasechromosome CDS973220 747 - 0.491299
glnL Z5405 histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII)chromosome CDS4919965 1050 - 0.545714
hisJ Z3571 histidine-binding periplasmic protein of high-affinity histidine transport systemchromosome CDS3222132 783 - 0.485313
hnr Z2011 Hnr proteinchromosome CDS1827223 1014 + 0.488166
hydG Z5580 response regulator of hydrogenase 3 activity (sensor HydH)chromosome CDS5080870 1326 + 0.56184
hydH Z5579 sensor kinase for HydG, hydrogenase 3 activitychromosome CDS5079497 1377 + 0.544662
hyfR Z3751 putative 2-component regulator, interaction with sigma 54chromosome CDS3397877 2040 + 0.526961
kdpD Z0842 sensor for high-affinity potassium transport systemchromosome CDS799940 2685 - 0.577654
kdpE Z0841 regulator of kdp operon (transcriptional effector)chromosome CDS799266 678 - 0.564897
lexA Z5642 regulator for SOS(lexA) regulonchromosome CDS5140283 609 + 0.522168
narL Z1996 pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor geneschromosome CDS1812461 651 - 0.519201
narP Z3450 nitrate/nitrite response regulator (sensor NarQ)chromosome CDS3095498 648 + 0.520062
narQ Z3726 sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL)chromosome CDS3371689 1701 + 0.516167
narX Z1998 nitrate/nitrate sensor, histidine protein kinase acts on NarL regulatorchromosome CDS1813104 1797 - 0.533667
nrfB Z5670 formate-dependent nitrite reductase; a penta-haeme cytochrome cchromosome CDS5172373 573 + 0.542757
ompR Z4760 response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesischromosome CDS4315281 720 - 0.548611
phoB Z0497 positive response regulator for pho regulon, sensor is PhoR (or CreC)chromosome CDS479125 690 + 0.543478
phoH Z1522 PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvationchromosome CDS1411715 1065 + 0.519249
phoP Z1859 transcriptional regulatory proteinchromosome CDS1695474 672 - 0.473214
phoQ Z1858 sensor protein PhoQchromosome CDS1694014 1383 - 0.510484
phoR Z0498 positive and negative sensor protein for pho regulonchromosome CDS479872 1296 + 0.532407
pphA Z2885 protein phosphatase 1 modulates phosphoproteins, signals protein misfoldingchromosome CDS2599351 660 - 0.480303
pphB Z4044 protein phosphatase 2chromosome CDS3650742 657 + 0.423135
proQ Z2878 ProQ protein that influences osmotic activation of ProPchromosome CDS2591873 120 - 0.525
prpR Z0426 regulator for prp operonchromosome CDS403558 1587 - 0.552615
pspA Z2482 phage shock protein, putative inner membrane proteinchromosome CDS2210603 669 - 0.496263
pspC Z2479 phage shock protein: activates phage shock-protein expressionchromosome CDS2209966 360 - 0.494444
pspF Z2484 psp operon transcriptional activatorchromosome CDS2211423 993 + 0.520644
ptsA Z5502 PEP-protein phosphotransferase system enzyme Ichromosome CDS5015368 2136 - 0.550562
ptsN Z4567 phosphotransferase system enzyme IIA, regulates N metabolismchromosome CDS4156147 492 + 0.51626
ptsP Z4146 PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins)chromosome CDS3755886 2247 - 0.538496
ptxA Z5804 putative PTS system enzyme II A componentchromosome CDS5305421 465 + 0.535484
qseB Z4377 quorum sensing Escherichia coli regulator Bchromosome CDS3976571 660 + 0.516667
qseC Z4378 quorum sensing Escherichia coli regulator Cchromosome CDS3977227 1350 + 0.526667
rcsB Z3476 positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)chromosome CDS3120433 651 + 0.470046
rcsC Z3477 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsBchromosome CDS3121283 2802 - 0.509636
relA Z4099 (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factorchromosome CDS3701114 2235 - 0.536913
rseA Z3854 sigma-E factor, negative regulatory proteinchromosome CDS3498978 639 - 0.519562
rseB Z3853 regulates activity of sigma-E factorchromosome CDS3498022 957 - 0.507837
rseC Z3852 sigma-E factor, negative regulatory proteinchromosome CDS3497546 480 - 0.55625
rstA Z2609 response transcriptional regulatory protein (RstB sensor)chromosome CDS2357237 729 + 0.491084
rstB Z2610 sensor histidine protein kinase (RstA regulator)chromosome CDS2357969 1302 + 0.50384
rtcR Z4780 putative 2-component regulatorchromosome CDS4338437 1599 + 0.547217
rtn Z3435 orf, hypothetical proteinchromosome CDS3076925 1557 + 0.506101
spoT Z5076 (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolasechromosome CDS4635245 2109 + 0.539592
spy Z2775 periplasmic protein related to spheroblast formationchromosome CDS2499855 486 - 0.506173
tap Z2939 methyl-accepting chemotaxis protein IV, peptide sensor receptorchromosome CDS2646524 1602 - 0.536829
tar Z2940 methyl-accepting chemotaxis protein II, aspartate sensor receptorchromosome CDS2648171 1662 - 0.523466
terD Z1175 putative phage inhibition, colicin resistance and tellurite resistance proteinchromosome CDS1103991 579 + 0.531952
terD_2 Z1614 putative phage inhibition, colicin resistance and tellurite resistance proteinchromosome CDS1499598 579 + 0.531952
terE Z1176 putative phage inhibition, colicin resistance and tellurite resistance proteinchromosome CDS1104638 576 + 0.506944
terE_2 Z1615 putative phage inhibition, colicin resistance and tellurite resistance proteinchromosome CDS1500245 576 + 0.506944
terF Z1177 partial putative phage inhibition, colicin resistance and tellurite resistance proteinchromosome CDS1105635 309 + 0.469256
terF_2 Z1616 partial putative phage inhibition, colicin resistance and tellurite resistance proteinchromosome CDS1501242 309 + 0.469256
terZ Z1171 putative phage inhibition, colicin resistance and tellurite resistance proteinchromosome CDS1100663 582 + 0.505155
terZ_2 Z1610 putative phage inhibition, colicin resistance and tellurite resistance proteinchromosome CDS1496270 582 + 0.505155
torR Z1412 response transcriptional regulator for torA (sensor TorS)chromosome CDS1320432 693 - 0.531025
torS Z1410 sensor protein torS (regulator TorR)chromosome CDS1316604 2715 - 0.544383
trg Z2300 methyl-accepting chemotaxis protein III, ribose sensor receptorchromosome CDS2076859 1641 - 0.511274
tsr Z5955 methyl-accepting chemotaxis protein I, serine sensor receptorchromosome CDS5480000 1665 + 0.539339
uhpA Z5159 response regulator, positive activator of uhpT transcription (sensor, uhpB)chromosome CDS4706251 591 - 0.580372
uhpB Z5158 sensor histidine protein kinase phosphorylates UhpAchromosome CDS4704749 1506 - 0.571713
umuD Z1946 SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuCchromosome CDS1763660 420 + 0.483333
uspA Z4895 universal stress protein; broad regulatory function?chromosome CDS4441648 435 + 0.485057
uvrY Z3002 putative 2-component transcriptional regulatorchromosome CDS2692185 657 - 0.497717
waaP Z5054 putative LPS biosynthesis enzymechromosome CDS4618000 807 - 0.473358
waaY Z5052 putative LPS biosynthesis proteinchromosome CDS4616217 708 - 0.30791
wzb Z3226 probable protein-tyrosine-phosphatasechromosome CDS2881244 444 - 0.545045
yaeG Z0174 orf, hypothetical proteinchromosome CDS186645 1176 + 0.527211
yahA Z0403 orf, hypothetical proteinchromosome CDS383852 1098 + 0.458106
yaiC Z0481 orf, hypothetical proteinchromosome CDS463484 1116 + 0.53853
ybcZ Z0708 putative 2-component sensor proteinchromosome CDS675764 1449 - 0.52795
ybdQ Z0751 orf, hypothetical proteinchromosome CDS722575 429 - 0.491841
ybeJ Z0805 putative periplasmic binding transport proteinchromosome CDS767980 909 - 0.487349
ybeS Z0795 putative enzyme of polynucleotide modificationchromosome CDS758556 1428 + 0.471289
ybeZ Z0809 putative ATP-binding protein in pho regulonchromosome CDS772280 1080 - 0.540741
ybiI Z1024 orf, hypothetical proteinchromosome CDS964285 267 - 0.505618
yccY Z1399 putative phosphatasechromosome CDS1308178 459 - 0.520697
ycdT Z1527 orf, hypothetical proteinchromosome CDS1419599 1359 + 0.385578
yciR Z2516 orf, hypothetical proteinchromosome CDS2239726 1986 + 0.483887
ydaA Z2435 orf, hypothetical proteinchromosome CDS2180385 951 + 0.50368
ydeH Z2163 orf, hypothetical proteinchromosome CDS1938726 891 + 0.444444
yeaG Z2823 chromosome CDS2543716 1935 + 0.499225
yeaI Z2825 orf, hypothetical proteinchromosome CDS2547334 1335 + 0.389513
yecG Z2948 putative regulatorchromosome CDS2656116 429 + 0.452214
yedV Z3060 putative 2-component sensor proteinchromosome CDS2736547 1359 - 0.399558
yedW Z3061 putative 2-component transcriptional regulatorchromosome CDS2737905 720 - 0.434722
yehT Z3302 orf, hypothetical proteinchromosome CDS2963466 735 - 0.49932
yehU Z3303 putative 2-component sensor proteinchromosome CDS2964182 1686 - 0.50949
yeiL Z3420 putative transcriptional regulatorchromosome CDS3061551 660 + 0.437879
yfeA Z3660 orf, hypothetical proteinchromosome CDS3312387 2229 - 0.489457
yfhA Z3830 putative 2-component transcriptional regulatorchromosome CDS3477673 1335 - 0.542322
yfhK Z3833 putative 2-component sensor proteinchromosome CDS3479875 1491 - 0.52448
yfiN Z3898 orf, hypothetical proteinchromosome CDS3532351 1227 + 0.485738
ygaA Z4017 putative 2-component transcriptional regulatorchromosome CDS3621996 1590 - 0.563522
ygaG Z3988 orf, hypothetical proteinchromosome CDS3605666 516 - 0.515504
ygeV Z4208 putative transcriptional regulatorchromosome CDS3809645 1779 - 0.458123
ygiM Z4408 orf, hypothetical proteinchromosome CDS4008050 621 + 0.52496
yhaC Z4473 orf, hypothetical proteinchromosome CDS4075260 1188 + 0.308923
yhdA Z4611 orf, hypothetical proteinchromosome CDS4203570 1941 - 0.505925
yhdW Z4629 putative periplasmic binding transport proteinchromosome CDS4221372 918 + 0.491285
yhjB Z4933 putative regulatorchromosome CDS4480656 603 - 0.477612
yhjH Z4939 orf, hypothetical proteinchromosome CDS4487785 768 - 0.526042
yhjK Z4943 orf, hypothetical proteinchromosome CDS4492995 1956 - 0.519939
yihK Z5407 putative GTP-binding factorchromosome CDS4922970 1824 + 0.534539
yiiO Z5458 chromosome CDS4974541 504 + 0.498016
yiiT Z5468 putative regulatorchromosome CDS4982016 429 + 0.431235
yjaI Z5578 orf, hypothetical proteinchromosome CDS5078834 567 - 0.516755
yjcC Z5660 orf, hypothetical proteinchromosome CDS5158602 1587 + 0.446755
yjdG Z5726 putative 2-component transcriptional regulatorchromosome CDS5233750 720 - 0.494444
yjdH Z5727 putative 2-component sensor proteinchromosome CDS5234466 1632 - 0.502451
yjfJ Z5789 putative alpha helical proteinchromosome CDS5294266 699 + 0.507868
yjiY Z5953 putative carbon starvation proteinchromosome CDS5476786 2166 - 0.561404
yjjQ Z5966 putative regulatorchromosome CDS5491831 726 + 0.447658
ylaB Z0569 orf, hypothetical proteinchromosome CDS543135 1557 - 0.479127
ylcA Z0709 putative 2-component transcriptional regulatorchromosome CDS677202 684 - 0.548246
ynaF Z2335 chromosome CDS2115267 507 + 0.475345
ynbD Z2316 putative enzymeschromosome CDS2090444 1293 - 0.500387
yojN Z3475 putative 2-component sensor proteinchromosome CDS3117744 2673 + 0.494201
yqeH Z4166 orf, hypothetical proteinchromosome CDS3777176 693 + 0.369408