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2024-05-05 19:00:19

Gene list

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COG category: Signal transduction mechanisms
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 145

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Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPO3038 sensor histidine kinase/response regulatorchromosome CDS3248605 2697 - 0.599926
NA SPO2849 BolA protein, truncationchromosome CDS3047454 255 - 0.670588
NA SPO2371 universal stress protein family proteinchromosome CDS2516319 435 - 0.657471
NA SPO3223 response regulatorchromosome CDS3428169 363 - 0.586777
NA SPO3454 hypothetical proteinchromosome CDS3657836 702 + 0.626781
NA SPO0163 sensory box histidine kinase/response regulatorchromosome CDS180023 2472 + 0.634709
NA SPO3455 adenylate/guanylate cyclasechromosome CDS3658917 1578 + 0.629278
NA SPO1479 transcriptional activator, putativechromosome CDS1552761 636 + 0.622642
NA SPO3450 adenylate/guanylate cyclasechromosome CDS3653459 1377 - 0.630356
NA SPO2629 C4-dicarboxylate transport transcriptional regulatory proteinchromosome CDS2782760 1230 - 0.682114
NA SPO1505 sensor histidine kinase/response regulatorchromosome CDS1579566 2214 - 0.665312
NA SPOA0323 cyclic nucleotide-binding proteinmegaplasmid CDS362508 705 + 0.651064
NA SPO3039 polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein, putativechromosome CDS3251298 744 - 0.568548
NA SPO3410 anti-sigma B factor, putativechromosome CDS3611441 450 + 0.628889
NA SPO2574 sensor histidine kinasechromosome CDS2726110 1605 + 0.650467
NA SPO1764 transcriptional regulator, LuxR familychromosome CDS1883585 777 - 0.638353
NA SPO1023 response regulatorchromosome CDS1073886 381 + 0.627297
NA SPO0572 adenylate/guanylate cyclasechromosome CDS581384 1716 + 0.663753
NA SPO0931 response regulatorchromosome CDS986495 720 - 0.679167
NA SPO1335 transcriptional regulator, Crp/Fnr familychromosome CDS1397382 669 - 0.702541
NA SPO2575 DNA-binding response regulator, LuxR familychromosome CDS2727711 651 + 0.643625
NA SPO3297 sensory box histidine kinase/response regulatorchromosome CDS3497068 1899 + 0.656135
NA SPO0022 response regulatorchromosome CDS21005 1338 + 0.602392
NA SPO0372 autoinducer synthesis proteinchromosome CDS386685 639 + 0.607199
NA SPO1012 transcriptional regulator, LuxR familychromosome CDS1061835 537 - 0.642458
NA SPO0712 Hpr serine kinase/phosphatase domain proteinchromosome CDS743434 519 + 0.643545
NA SPO2364 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome CDS2507889 1014 + 0.655819
NA SPO3037 DNA-binding response regulator, LysR familychromosome CDS3247808 810 + 0.581481
NA SPO3358 serine/threonine protein phosphatase family proteinchromosome CDS3556744 735 + 0.659864
NA SPO0979 low molecular weight phosphotyrosine protein phosphatasechromosome CDS1031074 462 + 0.660173
NA SPO3298 DNA-binding response regulatorchromosome CDS3498963 708 + 0.672316
NA SPO3456 flagellar protein, putativechromosome CDS3660508 798 - 0.597744
NA SPO1623 sensor histidine kinasechromosome CDS1719919 1371 - 0.707513
NA SPOA0206 transcriptional regulator, Crp/Fnr familymegaplasmid CDS224583 702 + 0.675214
NA SPO2511 dnaK suppressor protein, putativechromosome CDS2658830 477 - 0.614256
NA SPO0615 conserved domain proteinchromosome CDS633778 1134 + 0.656967
NA SPO3405 conserved hypothetical proteinchromosome CDS3608184 453 - 0.635762
NA SPO2173 sensor histidine kinasechromosome CDS2308313 1326 - 0.661388
NA SPO1144 universal stress protein family proteinchromosome CDS1199897 438 - 0.655251
NA SPO1947 phosphate regulon sensor histidine kinase, putativechromosome CDS2075688 1047 + 0.679083
NA SPO3426 DNA-binding response regulatorchromosome CDS3629493 687 - 0.611354
NA SPO1064 serine/threonine protein phosphatase, putativechromosome CDS1117879 957 + 0.61024
NA SPOA0200 conserved hypothetical proteinmegaplasmid CDS211718 1008 - 0.603175
NA SPO3409 anti-anti-sigma factorchromosome CDS3611080 339 + 0.59587
NA SPO1869 BolA family proteinchromosome CDS1988361 237 - 0.620253
NA SPO0463 universal stress family proteinchromosome CDS472365 408 + 0.625
NA SPOA0357 DNA-binding response regulatormegaplasmid CDS399373 729 + 0.640604
NA SPOA0207 adenylate/guanylate cyclasemegaplasmid CDS225279 3027 - 0.681533
NA SPO3868 conserved hypothetical proteinchromosome CDS4081068 1503 + 0.631404
NA SPO3203 guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putativechromosome CDS3413869 2193 - 0.633835
NA SPO1059 serine/threonine protein kinasechromosome CDS1110768 2112 + 0.620739
NA SPOA0069 polar amino acid uptake family ABC transporter, periplasmic substrate-binding proteinmegaplasmid CDS68410 771 + 0.635538
NA SPO1042 hypothetical proteinchromosome CDS1089858 669 + 0.560538
NA SPO0201 conserved domain proteinchromosome CDS218871 420 + 0.638095
NA SPO0744 conserved hypothetical proteinchromosome CDS774970 1722 - 0.62137
NA SPO0021 Hpt domain proteinchromosome CDS20571 354 - 0.590395
NA SPO0395 cyclic nucleotide-binding proteinchromosome CDS406211 585 - 0.695727
NA SPO0132 sensor histidine kinase/response regulatorchromosome CDS138223 2220 - 0.61982
NA SPO0188 sensor histidine kinasechromosome CDS204870 1386 + 0.637085
NA SPO1616 transcriptional regulator, putativechromosome CDS1712041 891 - 0.634119
NA SPO3527 universal stress protein family proteinchromosome CDS3735771 843 + 0.661922
NA SPO1566 DNA-binding response regulator, LuxR familychromosome CDS1656751 615 - 0.647154
NA SPO2840 GGDEF domain proteinchromosome CDS3038169 750 + 0.621333
NA SPO3462 flagellar hook-length control proteinchromosome CDS3664298 2478 + 0.640839
NA SPO1346 transcriptional regulator, LuxR family/sensory box proteinchromosome CDS1407319 615 + 0.643902
NA SPO0094 sensory box sensor histidine kinase/response regulatorchromosome CDS93264 2232 + 0.624104
NA SPO1775 conserved hypothetical proteinchromosome CDS1891953 720 + 0.652778
NA SPO0187 DNA-binding response regulatorchromosome CDS204208 666 + 0.569069
NA SPO1306 His/Glu/Gln/Arg/opine family ABC transporter, periplasmic His/Glu/Gln/Arg/opine family-binding proteinchromosome CDS1370957 813 - 0.617466
NA SPO0533 diguanylate cyclase, putativechromosome CDS528927 1542 - 0.642023
NA SPO3877 transcriptional regulator/arsenate reductasechromosome CDS4092256 894 + 0.614094
NA SPO2248 dnaK suppressor protein, putativechromosome CDS2392851 360 + 0.666667
NA SPO2978 adenylate/guanylate cyclasechromosome CDS3175590 960 + 0.651042
NA SPO0541 sensor histidine kinasechromosome CDS535901 1386 + 0.6443
NA SPOA0391 cyclic nucleotide-binding proteinmegaplasmid CDS440874 654 + 0.678899
NA SPO0523 phosphoglycerate mutase family proteinchromosome CDS520026 510 - 0.645098
NA SPO1061 LysM domain proteinchromosome CDS1114443 1101 + 0.578565
NA SPO3034 phosphoenolpyruvate-protein phosphotransferasechromosome CDS3241134 2244 - 0.648841
NA SPO2369 DNA-binding response regulator, LuxR familychromosome CDS2513756 663 + 0.607843
NA SPO3852 hypothetical proteinchromosome CDS4067659 1359 - 0.682855
NA SPO1173 diguanylate cyclase, putativechromosome CDS1223161 1797 - 0.637173
NA SPO2036 sensory box sensor histidine kianse/response regulatorchromosome CDS2163585 2307 - 0.648028
NA SPO3458 flagellar protein FlaF, putativechromosome CDS3661703 378 - 0.648148
NA SPO2287 autoinducer synthesis proteinchromosome CDS2424015 861 + 0.600465
NA SPO3650 adenylate/guanylate cyclasechromosome CDS3852371 1773 + 0.657642
NA SPO2630 C4-dicarboxylate transport sensor proteinchromosome CDS2783986 1737 - 0.680484
NA SPOA0102 transcriptional regulator, LuxR familymegaplasmid CDS102382 969 - 0.616099
NA SPO3100 conserved hypothetical proteinchromosome CDS3310968 744 - 0.599462
NA SPO2361 sensor histidine kinase/response regulatorchromosome CDS2503503 2169 - 0.640387
NA SPO2362 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome CDS2505668 1002 - 0.649701
NA SPO3548 conserved hypothetical proteinchromosome CDS3758598 498 - 0.682731
NA SPO1507 DNA-binding response regulator, LuxR familychromosome CDS1582986 705 - 0.649645
NA SPO1624 DNA-binding response regulatorchromosome CDS1721282 681 - 0.647577
NA SPO2721 hypothetical proteinchromosome CDS2903106 597 + 0.656616
NA SPO2753 diguanylate cyclase, putative/response regulatorchromosome CDS2945206 1389 + 0.686105
NA SPO0688 adenylate/guanylate cyclasechromosome CDS717598 1248 + 0.642628
NA SPO0327 EAL domain proteinchromosome CDS338082 840 - 0.617857
NA SPO1062 LysM domain proteinchromosome CDS1115805 1095 + 0.605479
NA SPO0161 DNA-binding response regulator, LuxR familychromosome CDS178533 615 - 0.62439
NA SPO2185 universal stress protein family proteinchromosome CDS2321564 438 - 0.664384
NA SPOA0006 PhoH family proteinmegaplasmid CDS5010 1011 + 0.646884
NA SPO1063 conserved domain proteinchromosome CDS1117059 837 + 0.667861
NA SPO0751 adenylate/guanylate cyclasechromosome CDS785123 1173 - 0.628303
NA SPO1809 nucleotidyltransferase/CBS/cyclic nucleotide-binding domain proteinchromosome CDS1925559 1824 - 0.662829
NA SPO1891 C4-dicarboxylate transport sensor protein DctB, putativechromosome CDS2014148 1770 + 0.655932
NA SPO3024 adenylate/guanylate cyclase/hydrolase, alpha/beta fold familychromosome CDS3228187 1398 + 0.627325
NA SPO0386 universal stress family proteinchromosome CDS399394 471 - 0.617834
NA SPO2667 polar amino acid uptake family ABC transporter, periplasmic substrate-binding proteinchromosome CDS2821816 834 - 0.623501
NA SPO0519 glutamate/glutamine/aspartate/asparagine ABC transporter, periplasmic substrate-binding proteinchromosome CDS515315 1143 + 0.629046
NA SPOA0358 sensor histidine kinasemegaplasmid CDS400107 1371 + 0.671043
NA SPO0597 universal stress family proteinchromosome CDS616052 405 + 0.693827
NA SPO3335 glutamine ABC transporter, periplasmic glutamine-binding proteinchromosome CDS3537829 1086 + 0.615101
NA SPO0929 type II DNA modification methyltransferase, putativechromosome CDS985559 633 - 0.631912
NA SPO0492 cyclic nucleotide-binding domain proteinchromosome CDS495649 843 + 0.667853
NA SPO3040 polar amino acid uptake family ABC transporter, periplasmic substrate-binding proteinchromosome CDS3252210 834 + 0.586331
NA SPO1411 C4-type zinc finger protein, DksA/TraR familychromosome CDS1482007 270 + 0.677778
NA SPOA0327 rzcC protein, putativemegaplasmid CDS367716 567 + 0.643739
NA SPO1615 cyclic nucleotide-binding proteinchromosome CDS1711334 675 + 0.648889
NA SPO1516 amino acid ABC transporter, periplasmic substrate-binding protein, putativechromosome CDS1591450 915 + 0.66776
NA SPO2977 adenylate/guanylate cyclasechromosome CDS3174604 990 + 0.642424
NA SPO2747 diguanylate cyclase, putativechromosome CDS2938818 1068 - 0.650749
NA SPOA0395 hypothetical proteinmegaplasmid CDS443538 1293 + 0.629544
arsC-2 SPOA0073 arsenate reductasemegaplasmid CDS71286 462 + 0.58658
chvG SPO0711 sensor histidine kinase ChvGchromosome CDS741777 1710 + 0.64152
chvI SPO0710 DNA-binding response regulator ChvIchromosome CDS741039 705 + 0.58156
coxC SPO2400 carbon monoxide dehydrogenase operon C proteinchromosome CDS2547244 1122 - 0.565954
ctrA SPO1679 DNA-binding response regulator CtrAchromosome CDS1785341 717 + 0.58159
dctB SPOA0236 C4-dicarboxylate transport sensor protein dctBmegaplasmid CDS258234 1722 + 0.62079
dctD-1 SPO1892 C4-dicarboxylate transport transcriptional regulatory protein DctDchromosome CDS2015932 1335 + 0.644195
dctD-2 SPOA0237 C4-dicarboxylate transport transcriptional regulatory protein DctDmegaplasmid CDS259961 1341 + 0.631618
fnrL SPO3531 transcriptional activator protein FnrLchromosome CDS3739351 744 - 0.622312
glnE SPO2523 glutamate-ammonia ligase adenylyltransferasechromosome CDS2668595 2802 - 0.691292
gltI SPO2658 glutamate/aspartate ABC transporter, periplasmic substrate-binding proteinchromosome CDS2813357 864 + 0.630787
lexA SPO2154 LexA repressorchromosome CDS2289362 696 + 0.639368
ntrB SPO2088 nitrogen regulation protein NtrBchromosome CDS2226413 1080 - 0.644444
ntrC SPO2087 nitrogen regulation protein NtrCchromosome CDS2225040 1374 - 0.657205
ntrX SPO2085 nitrogen assimilation regulatory protein NtrXchromosome CDS2221246 1413 - 0.645435
ntrY SPO2086 nitrogen regulation protein ntrYchromosome CDS2222655 2286 - 0.644794
petR SPO0251 DNA-binding response regulator PetRchromosome CDS271676 702 - 0.646724
phoB SPO1953 phosphate regulon transcriptional regulatory protein PhoBchromosome CDS2082449 690 + 0.647826
ptsN SPO0077 PTS IIA-like nitrogen-regulatory protein PtsNchromosome CDS77195 465 - 0.643011
regA SPO3865 photosynthetic apparatus regulatory protein RegAchromosome CDS4078254 555 - 0.652252
regB SPO3867 sensor histidine kinase RegBchromosome CDS4079603 1398 + 0.626609
rtcR SPO0156 transcriptional regulator RtcRchromosome CDS172724 1572 - 0.633588
typA SPO2031 GTP-binding protein TypAchromosome CDS2156688 1821 + 0.655684