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2024-05-07 09:02:48

Gene list

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COG category: Signal transduction mechanisms
Organism: Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043

Number of genes found: 216

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Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECA2433 putative signaling proteinchromosome CDS2748047 2169 - 0.485938
NA ECA2226 methyl-accepting chemotaxis proteinchromosome CDS2528725 1836 + 0.529412
NA ECA4152 putative two-component system sensor kinasechromosome CDS4640126 1719 + 0.547993
NA ECA0582 putative plasmid-related proteinchromosome CDS644602 360 - 0.469444
NA ECA2156 ABC transporter, substrate binding proteinchromosome CDS2457599 984 - 0.533537
NA ECA0570 putative exported proteinchromosome CDS632961 1533 + 0.522505
NA ECA2432 two-component sensor kinasechromosome CDS2746157 1743 - 0.475043
NA ECA1318 PhoH-like ATP-binding proteinchromosome CDS1490968 1059 - 0.522191
NA ECA0889 two-component system response regulatorchromosome CDS991470 681 + 0.527166
NA ECA3271 conserved hypothetical proteinchromosome CDS3678304 792 - 0.445707
NA ECA2061 methyl-accepting chemotaxis proteinchromosome CDS2346979 1527 - 0.48592
NA ECA3537 amino acid-binding proteinchromosome CDS3964485 786 + 0.473282
NA ECA0434 methyl-accepting chemotaxis proteinchromosome CDS495149 1950 - 0.538974
NA ECA1769 conserved hypothetical proteinchromosome CDS2015203 429 + 0.4662
NA ECA0828 putative amino acid-binding periplasmic proteinchromosome CDS919625 783 - 0.431673
NA ECA3435 putative sigma-54 dependent transcriptional regulatorchromosome CDS3850745 1554 - 0.565637
NA ECA1187 putative carbon starvation proteinchromosome CDS1346334 2154 + 0.536212
NA ECA2878 putative signal transduction proteinchromosome CDS3223378 2394 - 0.399332
NA ECA3615 putative methyl-accepting chemotaxis proteinchromosome CDS4062200 1941 + 0.516744
NA ECA3353 putative two-component system response regulatorchromosome CDS3770090 717 + 0.471409
NA ECA3592 methyl-accepting chemotaxis proteinchromosome CDS4037846 1587 - 0.531821
NA ECA2622 capsid scaffolding protein Ochromosome CDS2953289 834 - 0.541966
NA ECA4120 methyl-accepting chemotaxis proteinchromosome CDS4594503 1662 + 0.555355
NA ECA0431 hypothetical proteinchromosome CDS491595 1347 + 0.528582
NA ECA0856 ABC transporter, periplasmic binding proteinchromosome CDS947609 897 - 0.51728
NA ECA3579 methyl-accepting chemotaxis proteinchromosome CDS4022115 1536 + 0.495443
NA ECA2348 conserved hypothetical proteinchromosome CDS2658991 1935 + 0.523514
NA ECA3642 methyl-accepting chemotaxis proteinchromosome CDS4090959 1656 + 0.57186
NA ECA3917 LuxR-family transcriptional regulatorchromosome CDS4385059 666 + 0.391892
NA ECA0091 methyl-accepting chemotaxis proteinchromosome CDS107366 1893 - 0.485473
NA ECA0183 methyl-accepting chemotaxis proteinchromosome CDS204906 1662 + 0.520457
NA ECA2317 methyl-accepting chemotaxis proteinchromosome CDS2621870 1797 + 0.483027
NA ECA2014 conserved hypothetical proteinchromosome CDS2287361 1200 + 0.493333
NA ECA2966 putative extracellular solute-binding proteinchromosome CDS3317025 834 + 0.519185
NA ECA2497 putative signal transduction proteinchromosome CDS2814296 1218 + 0.405583
NA ECA3207 conserved hypothetical proteinchromosome CDS3587836 855 - 0.471345
NA ECA1829 putative Crp/Fnr-family of transcriptional regulatorchromosome CDS2076005 717 - 0.517434
NA ECA3902 methyl-accepting chemotaxis proteinchromosome CDS4367239 1728 - 0.510417
NA ECA3255 two-component system response regulatorchromosome CDS3641032 1338 - 0.536622
NA ECA1081 probable transcriptional regulatorchromosome CDS1209940 1623 + 0.442391
NA ECA2461 conserved hypothetical proteinchromosome CDS2776550 507 - 0.473373
NA ECA3270 putative exported proteinchromosome CDS3676002 1515 - 0.415182
NA ECA0658 putative exported proteinchromosome CDS731959 489 + 0.498978
NA ECA1539 putative transmembrane sensor proteinchromosome CDS1792295 969 - 0.572755
NA ECA1321 putative membrane proteinchromosome CDS1495196 681 - 0.471366
NA ECA0777 conserved hypothetical proteinchromosome CDS848523 690 + 0.372464
NA ECA1204 putative two-component system sensor kinasechromosome CDS1369800 2685 - 0.465922
NA ECA3148 putative regulatorchromosome CDS3514800 1548 + 0.482558
NA ECA1332 methyl-accepting chemotaxis proteinchromosome CDS1508540 1668 + 0.518585
NA ECA4195 putative amino-acid ABC transporter binding proteinchromosome CDS4688132 792 - 0.496212
NA ECA4333 methyl-accepting chemotaxis proteinchromosome CDS4851698 1671 + 0.515859
NA ECA2157 ABC transporter, substrate binding proteinchromosome CDS2458678 936 - 0.553419
NA ECA0814 putative iron sensor proteinchromosome CDS902238 948 + 0.527426
NA ECA0659 putative signaling membrane proteinchromosome CDS732646 1470 + 0.457143
NA ECA4489 putative extracellular solute-binding proteinchromosome CDS5030439 840 - 0.508333
NA ECA3199 putative membrane proteinchromosome CDS3580034 924 + 0.400433
NA ECA0046 putative signaling membrane proteinchromosome CDS56357 1608 - 0.470771
NA ECA3625 conserved hypothetical proteinchromosome CDS4074061 1833 + 0.478451
NA ECA2008 putative signaling proteinchromosome CDS2280396 1779 - 0.468241
NA ECA2091 putative signaling membrane proteinchromosome CDS2380997 1620 - 0.508642
NA ECA1471 hypothetical proteinchromosome CDS1671080 264 + 0.511364
NA ECA3245 methyl-accepting chemotaxis proteinchromosome CDS3627365 1668 - 0.490408
NA ECA0266 putative signaling membrane proteinchromosome CDS311016 1938 + 0.517544
NA ECA2431 two-component response regulatorchromosome CDS2745411 750 - 0.466667
NA ECA1568 putative chemotaxis signal transduction proteinchromosome CDS1825190 972 + 0.479424
NA ECA3683 conserved hypothetical proteinchromosome CDS4133069 1014 + 0.534517
NA ECA0058 transmembrane sensorchromosome CDS74039 990 + 0.576768
NA ECA3549 putative signaling proteinchromosome CDS3978974 741 + 0.34143
NA ECA0342 PTS system, EIIa componentchromosome CDS389332 480 - 0.475
NA ECA0578 putative exported proteinchromosome CDS640710 1425 + 0.519298
NA ECA0080 methyl-accepting chemotaxis proteinchromosome CDS94276 1953 + 0.488479
NA ECA3548 conserved hypothetical proteinchromosome CDS3976723 1725 - 0.483478
NA ECA3587 putative membrane proteinchromosome CDS4033670 621 + 0.483092
NA ECA1273 putative sensor proteinchromosome CDS1447133 975 - 0.56718
NA ECA1841 conserved hypothetical proteinchromosome CDS2087583 726 + 0.447658
NA ECA1681 conserved hypothetical proteinchromosome CDS1928679 1329 - 0.458992
NA ECA1509 methyl-accepting chemotaxis proteinchromosome CDS1754695 1680 + 0.523214
NA ECA1105 putative methyl-accepting chemotaxis proteinchromosome CDS1251539 1791 + 0.525963
NA ECA1086 putative signaling proteinchromosome CDS1215511 708 - 0.535311
NA ECA3681 conserved hypothetical proteinchromosome CDS4130795 1332 + 0.546547
NA ECA3440 conserved hypothetical proteinchromosome CDS3857565 1221 - 0.552826
NA ECA3495 putative amino acid ABC transporter, substrate binding proteinchromosome CDS3914634 807 - 0.534077
NA ECA3886 putative membrane proteinchromosome CDS4349112 1089 + 0.437098
NA ECA2579 putative methyl-accepting chemotaxis citrate transducerchromosome CDS2910808 1935 + 0.500775
NA ECA3851 putative exported proteinchromosome CDS4305089 1605 + 0.497196
NA ECA3624 methyl-accepting chemotaxis proteinchromosome CDS4071959 1572 + 0.534351
NA ECA3718 conserved hypothetical phage-related proteinchromosome CDS4158788 546 + 0.582418
NA ECA4363 putative membrane proteinchromosome CDS4886993 1182 - 0.540609
NA ECA4334 methyl-accepting chemotaxis proteinchromosome CDS4854078 1671 + 0.536206
NA ECA0583 putative plasmid-related proteinchromosome CDS644958 303 - 0.465347
NA ECA0436 methyl-accepting chemotaxis proteinchromosome CDS500719 1578 - 0.513942
NA ECA2356 putative sugar phosphotransferase enzyme IIa componentchromosome CDS2668329 438 + 0.438356
NA ECA2886 conserved hypothetical proteinchromosome CDS3234825 267 - 0.344569
NA ECA2206 putative universal stress proteinchromosome CDS2505289 951 - 0.513144
NA ECA0247 putative cystine-binding periplasmic proteinchromosome CDS293088 768 - 0.489583
NA ECA2530 methyl-accepting chemotaxis proteinchromosome CDS2846431 1560 - 0.521795
NA ECA2840 putative membrane proteinchromosome CDS3182764 1473 + 0.471826
NA ECA3838 methyl-accepting chemotaxis proteinchromosome CDS4289237 1620 - 0.49321
NA ECA3257 two-component system sensor kinasechromosome CDS3643221 1437 - 0.542102
NA ECA0182 methyl-accepting chemotaxis proteinchromosome CDS202590 1629 + 0.523634
NA ECA4335 methyl-accepting chemotaxis proteinchromosome CDS4856341 1647 + 0.51609
NA ECA0786 two component system sensor kinasechromosome CDS859318 1500 + 0.504667
NA ECA2580 putative methyl-accepting chemotaxis citrate transducerchromosome CDS2913047 1941 + 0.493045
NA ECA0186 conserved hypothetical proteinchromosome CDS208739 783 + 0.527458
NA ECA0390 methyl-accepting chemotaxis proteinchromosome CDS440934 1620 + 0.520988
NA ECA0785 two component system response regulatorchromosome CDS858630 711 + 0.468354
NA ECA4332 methyl-accepting chemotaxis proteinchromosome CDS4849738 1680 + 0.55
NA ECA1281 methyl-accepting chemotaxis proteinchromosome CDS1455488 1671 + 0.509874
NA ECA3374 putative signaling membrane proteinchromosome CDS3789808 1599 + 0.43965
NA ECA2712 putative methyl-accepting chemotaxis proteinchromosome CDS3046666 1683 - 0.513963
NA ECA3733 putative phage-related proteinchromosome CDS4172818 885 + 0.564972
NA ECA4470 extracellular solute-binding proteinchromosome CDS5013698 837 - 0.514934
NA ECA3264 putative signaling membrane proteinchromosome CDS3654426 1953 + 0.546851
NA ECA0933 LuxR-family transcriptional regulatorchromosome CDS1044652 690 - 0.378261
NA ECA0890 two-component system sensor kinasechromosome CDS992153 1365 + 0.54359
NA ECA1774 methyl-accepting chemotaxis proteinchromosome CDS2018184 1665 + 0.466667
aapJ ECA0245 general L-amino ABC transporter binding proteinchromosome CDS290928 1026 - 0.515595
aceK ECA3989 isocitrate dehydrogenase kinase/phosphatasechromosome CDS4465850 1779 - 0.507026
adrA ECA1453 putative signaling membrane proteinchromosome CDS1649698 1074 + 0.49162
aer1 ECA2001 aerotaxis receptorchromosome CDS2267752 1554 - 0.484556
aer2 ECA2002 aerotaxis receptorchromosome CDS2269650 1554 - 0.515444
apaH ECA3861 bis(5'-nucleosyl)-tetraphosphatasechromosome CDS4320238 846 + 0.541371
arcA ECA3893 aerobic respiration control proteinchromosome CDS4359083 717 + 0.51046
arcB ECA0314 aerobic respiration control sensor proteinchromosome CDS363219 2370 + 0.529958
artI ECA2668 arginine-binding periplasmic protein 1chromosome CDS3003564 732 + 0.491803
artJ ECA2671 arginine-binding periplasmic protein 2chromosome CDS3005969 732 + 0.508197
baeR ECA3189 two-component system response regulatorchromosome CDS3569781 729 + 0.561043
baeS ECA3188 two-component system sensor kinasechromosome CDS3568380 1368 + 0.563596
bolA ECA1146 morphogene, putative regulator of murein geneschromosome CDS1298919 315 + 0.51746
cdaR ECA3300 carbohydrate diacid regulatorchromosome CDS3707103 1158 - 0.561313
cheA ECA1689 chemotaxis proteinchromosome CDS1937404 2001 + 0.482759
cheB ECA1693 protein-glutamate methylesterasechromosome CDS1943163 1053 + 0.497626
cheD ECA1691 methyl-accepting chemotaxis proteinchromosome CDS1940069 1686 + 0.466192
cheR ECA1692 chemotaxis protein methyltransferasechromosome CDS1942291 873 + 0.471936
cheW ECA1690 chemotaxis proteinchromosome CDS1939436 498 + 0.467871
cheY ECA1694 chemotaxis proteinchromosome CDS1944254 390 + 0.446154
cheZ ECA1695 chemotaxis proteinchromosome CDS1944653 645 + 0.482171
chpA ECA1676 putative growth inhibitory proteinchromosome CDS1923957 333 - 0.468468
chpR ECA1677 suppressor of growth inhibitory protein ChpAchromosome CDS1924289 252 - 0.444444
citA ECA2577 two-component sensor kinasechromosome CDS2907965 1596 + 0.493734
citB ECA2578 two-component response regulatorchromosome CDS2909647 702 + 0.472934
cpxA ECA4312 two-component sensor kinasechromosome CDS4829896 1371 + 0.552152
cpxP ECA4310 putative stress resistance proteinchromosome CDS4828523 525 - 0.508571
cpxR ECA4311 two-component response regulatorchromosome CDS4829201 699 + 0.519313
crp ECA4064 cyclic AMP receptor proteinchromosome CDS4529138 633 + 0.470774
csrA ECA3366 carbon storage regulatorchromosome CDS3781840 186 - 0.467742
cstA ECA1961 carbon starvation proteinchromosome CDS2219248 2064 - 0.541667
dcuR ECA4398 two-component response regulatorchromosome CDS4935389 723 - 0.484094
dcuS ECA4399 two-component sensor kinasechromosome CDS4936104 1659 - 0.513562
dksA ECA3317 dnak suppressor proteinchromosome CDS3729128 456 + 0.517544
envZ ECA4107 two-component osmolarity sensor proteinchromosome CDS4577365 1359 - 0.543782
evr ECA0708 virulence regulatorchromosome CDS776322 351 + 0.421652
expA ECA2882 two-component response regulatorchromosome CDS3230467 657 - 0.467276
expI ECA0105 N-acylhomoserine lactone synthesis proteinchromosome CDS125689 651 + 0.37788
expM ECA2330 response regulatorchromosome CDS2639973 1017 - 0.491642
fecR ECA1078 iron(III) dicitrate sensor proteinchromosome CDS1208167 963 - 0.570093
fnr ECA2207 fumarate and nitrate reduction regulatory proteinchromosome CDS2506430 747 - 0.522088
glnE ECA3585 glutamate-ammonia-ligase adenylyltransferasechromosome CDS4029078 2856 - 0.55077
glnG ECA0027 nitrogen regulation two-component system, response regulatorchromosome CDS32447 1413 - 0.552017
glnH ECA2768 glutamine-binding periplasmic proteinchromosome CDS3109585 747 + 0.493976
glnL ECA0028 nitrogen regulation two-component system, histidine kinasechromosome CDS33868 1050 - 0.539048
gltI ECA1314 glutamate/aspartate periplasmic binding proteinchromosome CDS1486479 897 - 0.469342
hisJ ECA3050 histidine-binding periplasmic proteinchromosome CDS3406395 780 - 0.479487
hrpQ ECA2084 type III secretion proteinchromosome CDS2371988 936 - 0.58547
hrpS ECA2090 sigma-54-dependent enhancer-binding proteinchromosome CDS2379836 1065 + 0.528638
hrpX ECA2088 two-component sensor kinasechromosome CDS2377334 1437 + 0.520529
hrpY ECA2089 two-component response regulatorchromosome CDS2378840 642 + 0.545171
hyfR ECA1236 hydrogenase-4 transcriptional activatorchromosome CDS1406110 1980 + 0.523737
kdpD ECA1339 two-component sensor protein of kdp operonchromosome CDS1515565 2733 - 0.570801
kdpE ECA1338 two-component response regulator of kdp operonchromosome CDS1514879 681 - 0.562408
lexA ECA0630 LexA repressorchromosome CDS704061 609 + 0.490969
luxS ECA3362 autoinducer-2 production proteinchromosome CDS3777271 516 - 0.494186
narL ECA2028 nitrate/nitrite response regulatorchromosome CDS2305560 651 - 0.50384
narP ECA1901 nitrate/nitrite response regulatorchromosome CDS2153926 633 + 0.541864
narQ ECA1900 nitrate/nitrite sensor proteinchromosome CDS2152117 1722 + 0.520325
narX ECA2029 nitrate/nitrite sensor kinasechromosome CDS2306203 1809 - 0.538972
nifA ECA2938 nif-specific regulatory proteinchromosome CDS3282703 1575 - 0.554286
nifL ECA2939 nitrogen fixation regulatory proteinchromosome CDS3284274 1488 - 0.543011
norR ECA0903 nitric oxide reductase sigma-54-dependent transcriptional regulatorchromosome CDS1007112 1539 + 0.578947
occJ ECA4085 octopine-binding periplasmic proteinchromosome CDS4554284 870 + 0.522988
ompR ECA4108 two-component osmolarity response regulatorchromosome CDS4578723 720 - 0.543056
pehR ECA2445 two-component response regulator of virulence determinantschromosome CDS2760640 690 + 0.510145
pehS ECA2446 two-component sensor kinase, regulator of virulence determinantschromosome CDS2761326 1455 + 0.52646
phoB ECA1110 phosphate regulon response regulatorchromosome CDS1260789 690 + 0.511594
phoH ECA1741 phosphate starvation-inducible proteinchromosome CDS1988090 789 + 0.506971
phoR ECA1111 phosphate regulon histidine kinasechromosome CDS1261506 1323 + 0.531368
pmrA ECA4044 two-component response regulatorchromosome CDS4510929 669 + 0.5142
pmrB ECA4045 two-component sensor kinasechromosome CDS4511594 1095 + 0.507763
proQ ECA2460 ProP effectorchromosome CDS2775716 750 - 0.516
pspA ECA1983 phage shock protein Achromosome CDS2250678 666 + 0.522523
pspC ECA1985 phage shock protein Cchromosome CDS2251669 366 + 0.5
pspF ECA1982 psp operon transcriptional activatorchromosome CDS2249463 990 - 0.547475
ptsN ECA0286 putative nitrogen regulatory proteinchromosome CDS335126 474 - 0.512658
ptsP ECA0986 phosphoenolpyruvate-protein phosphotransferasechromosome CDS1097087 2247 + 0.548732
qseB ECA0008 two-component system response regulator.chromosome CDS9014 663 - 0.547511
qseC ECA0007 two-component system sensor kinasechromosome CDS7668 1350 - 0.528148
rcsB ECA1203 two-component response regulatorchromosome CDS1369147 645 - 0.465116
rcsC ECA1202 two-component system sensor proteinchromosome CDS1366254 2856 + 0.505252
relA ECA3569 GTP pyrophosphokinasechromosome CDS4004843 2238 - 0.541555
rpfA ECA3571 two-component sensor kinase and response regulatorchromosome CDS4008599 2802 + 0.539971
rseA ECA3283 sigma-E factor negative regulatorchromosome CDS3688150 648 - 0.509259
rseB ECA3282 sigma-E factor regulatory proteinchromosome CDS3687188 963 - 0.505711
rseC ECA3281 sigma-E factor regulatory proteinchromosome CDS3686739 453 - 0.512141
rstA ECA2013 two-component response regulatorchromosome CDS2286402 738 - 0.5271
rstB ECA2012 two component sensor kinasechromosome CDS2285092 1314 - 0.518265
sgcA ECA3773 putative phosphotransferase enzyme II, A componentchromosome CDS4215531 444 + 0.497748
sixA ECA3072 phosphohistidine phosphatasechromosome CDS3429348 483 - 0.534162
spoT ECA0038 guanosine-3',5'-bis(diphosphate)3'-pyrophosphohy drolasechromosome CDS47886 2100 - 0.516667
traR ECA1625 putative conjugal transfer proteinchromosome CDS1880218 210 - 0.485714
trg ECA1683 methyl-accepting chemotaxis proteinchromosome CDS1930573 1722 - 0.473868
typA ECA0030 GTP-binding regulatory proteinchromosome CDS37037 1824 + 0.506579
uhpA ECA1497 two-component system response regulator proteinchromosome CDS1741713 630 - 0.536508
uhpB ECA1496 two-component system sensor histidine kinasechromosome CDS1740132 1578 - 0.551965
uspA ECA0050 universal stress protein Achromosome CDS62108 438 + 0.472603
virB5 ECA1619 putative conjugal transfer proteinchromosome CDS1873390 729 - 0.474623
wzb ECA1418 probable protein-tyrosine-phosphatasechromosome CDS1609114 435 + 0.471264