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# Rhodopseudomonas palustris CGA009, CGA009

>RPA0079 sensor histidine kinase with multiple PAS domains
MSVAPCGLGQSMSGVLGSIRRTSLSCTSLVHGLAGTAVMVASSPARAADD
HLAAITSSLLLDLNRHEMMTLIIALAALGFSVMSAIMLVRTRQRAVAREA
GLRADLQGLQAESDRFQALLFAEPQVLISWAAGDSRPQVSGDTALFLPLE
TQSRQPQRVLAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNGRSI
EAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAP
WPIWTRRSDGTLSFANAAYARATDASDAADAIGRNLELLDSGDRAALARA
LGDGYEYSGRLPIVVGGERRYYDVRALKVSGGSAGIAVDATETAALGAAL
ERMADAHRRTLDQLSSGVAVFDAQRRLSFYNDSYRKLWDLDRIFLDSHPD
DSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVEAEKDVWYLPDGRAVS
IVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAVFG
SNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALR
GAITGIDDRRHVLLKIERKDGSVLACKTMPLPDGATMLTFQDITDTENVE
RALRERNEALETADRIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPL
TEKQAEYVNYITTSTNALMAIINNILDLASIDAGAMTLNLGPIDIRKAID
AAAEGIQDRLARDQIALQIDVDPAIESFVGDERRVVQVLYNLLANAIDFS
PSQGTVRLTVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFESDPQGSRHR
GAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFPIEPAAQRHAAE
>RPA2368 pseudogene-two-component transcriptional regulator, winged helix family
MSLQLTLTEFRLLAHMAKAPTRAFGRHELIDACLPGGDALERTVDSHVSN
LRRKLDEAGATGMMSVVRGIGYRLTAA
>RPA4167 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains
MFTCSKHLLHQTPIAISGCCMTARIRKAGRGAACAALSTCLFSAAANAAP
GFVPASYIGSIEPEILWELLIGGFVVAAFTCATALWATSMLRKQRRAHRR
KNILVDSVLNKLQQGVVIADASGRIVFCNDRYLAMYDLTRAEVTPGMPGR
DLLALRRARGMLDLTNDEFYRNAGLPQGYVAELPDGRCIQVKFSRLANGG
TIATHDDCSELRRMSKELSTTKQFLESVIDNIPVCVAAKSIEDGRYILAN
RAFETLSGLSRDKIIGATADQLYPARSAASIREADQSALQSITGAFQSEL
TVELGRGDRILASNRVVARNEHGEPEFLIALFEDITNRRALSVELEKTKR
FLELVIDNIPVALTVQNTADGRYMLANRGAEIILNRRREDATGLTTGEIF
NAKEARLIAERDELAIRKGGLVVEEHPISTAGGLRLFVTRRMTVTDEADQ
AHYLIKTHVDVTDRRQTEARMAHMAYHDGLTDLPNRDAFLKSLTQMIEAC
DNAVDEFAVLSVDLDGLKEINDVFGHAIGDKLLIEVARRIEWASRGGVVA
RLSGDEFGLIIDGPQPAAARDLASMVAKALAPGFVIDGKTVRIGVTTGVA
LFPANGTDAASLLANAGAALFRAKAKARGSVTVFEPEMDMQIRDRRVLHQ
DLSNAIRNGEMSLYYQPQASSTKRVGNNDIVGFEALTRWRHPTRGFVPPS
EFIPLAEESGLIVELGEWILREACRQAASWARPLQVAVNLSPAQFLNTDL
VAFVHEVLLQTGLEPGRLELEITEGVLIEDFDRGLSLLRRLKALGVRVSM
DDFGSGYSSLTYLQAFPFDKIKIDRAFIMNLGRNPQSAAIVRAVIGLGHG
LGVTLVAEGVETQDQLDFLVDESCDAVQGYLIGKPAPIDQYRWLVGLDAL
EDRAPARAREAG
>RPA1681 sensor histidine kinase with a response regulator receiver domain
MLPPTRPNLKRSLVALRVTTIVLIATIVGTNLIFLGNLRESTLQTAETNL
ERYTLTLAEEADRSLKSMDLLLSSVRDYVSRAGVTDSESYRRLMSQQSVY
SLLSEKITGMPQVDAVTMIDETGKLINFSRYWPIPDVNISDRDYFRALSS
DSTLSTFVSAPTRNRGSGTWNIYLAQRLNDTRGGFIGLLLGAISVQYFEN
FFAATSPGAGTEIALLRSDGTLLVNYPHSDKLGTVVTDAGRLALAAGSRQ
REAGNSNKQIRVTRMLPNYPIVVRVTQPEDSALQNWQDMAVLMIAMSVIS
ALVIITGSVAIARWWGKQHLYAEAAEAASAAKSSFVAMMSHEIRTPMNAV
IGLATNLLETRLDAEQRQAVTSIHDAGDNLLQILDDILDFSKLEAGRLSL
EPIPFAPRNIVDNTLSVIGPRAIAKGLVIRLEARGDIPEALTGDAGRIRQ
VLLNLISNAVKFTTAGEIVITTECISRDTTNARMRWIVTDTGIGIAADKI
DSLFKDFVQADSSISRRFGGSGLGLAISKRLIEQMGGKIGVSSAPGRGSE
FHFSLTLPIADHAAPPEQDDQDVYAQFRARIEAAGRPLRILVVDDNPTNR
AIATQMLGEFRVQTNTACDGTEAVTAATRFGYDVVLMDVRMPEMDGLDAT
RAIRSHGGALANVPIIAFTANAFAEDAAACRAAGMNDHVAKPVRKKALIE
AILRALPPLPAAESPRIVPVPAPLAPPPADNSDQTEVPSDVAGAGQIYVG
RKAFGHLVEEIGEDATLAVLSVFARDTEARIALFDTLDIANERRRIEREA
HSLKSAAATFGLDTLSGLARELEHAAPHLTQAEYVAMTRQIKAAFSAARR
VPADDNQLVELAG
>RPA4449 pmethyl-accepting chemotaxis receptor/sensory transducer
MLSRLHLTIGRRIYLLIGLGFVGLIGLTLLDSRELATGLQQQKQIELKHL
AELAISFVKDEYDAAQRGEISTDQAQKRAEARIAKLRYGGNEYFFITDMQ
SKMLMHPIAKQLVGQDQSNAKDPNGKMLFVEMVNTVRRSGSGFVDYVWPK
PGSDKPQPKLTFVAGFEPWGWVIGTGVYIDDLDAQTWSAMQRSLIAATLV
LLITIAVSVFMARRITRPILAMTGAMKDLAGGRIDIEVPGIGRHDEIGEM
AEAVEVFKLNAQERRRLEGERQEIEARAEAERRAHANQVAEAFERAIGEI
VETVSAASDELEASATTLTRTAEQSQELATAVAAASEEASTNVQSVASAT
EEMSSSVNEISRQVQESARIAHEAVDQARQTNGRVEELAKAASRIGDVVE
LISNIAGQTNLLALNATIEAARAGEAGRGFAVVASEVKALAEQTAKATGE
ITLQINGIQAATDQSVAAIKEIGETIAKMSEISSTIASAVEEQGAATQEI
SRNVQQASLGTQQVSSNITDVQRGATETGAASAQVLAAAKSLSGDSNRLK
VEVSNFLDSVRAA
>RPA1932 sensor histidine kinase
MTAFGKLIRTTAFRLTLVYLFLFGLFAASLVAYFAWTTRKLITDQITTTV
DAEIAEINDIYGRRGLRGVVFTLENRALRPGANLYLVTTPAGQAVAGNVG
ALAPGVMSKNGWSETFYRRLDDQERSDHRALVRVTELSSGFRLLVGRDLE
ERRRLNKVVRSAAQWSVLIVVVLGLGGGVFAARRVLRRIDAMTGTTQRIM
AGDLSGRLPVGRSGDELDRLAENLNAMLERIEALMSGMKEVSDNIAHDLK
TPLTRLRNRAEEALARAASESDYRVALERTIEESDGLIRTFNALLMIARA
EAGYASGDMTDFDAAEIARDIHELYEPLAEDNALTLQVEALAAPVRGNRE
LISQALANLVENAIKYGKPQPAADADVPAATGTVQIEARRDGDQVLLSVT
DHGIGIPEGDRKHAIERFVRLEASRTLPGSGLGLSLASAVARLHGGELRL
ADADPGLRATLAIPARTGEGQASATTLEPAPA
>RPA1858 sensor histidine kinase with a PAS domain
MAVSRIIGECLDALLHPSARYDALTTARHRAFLAPRLLGSLAAFAAFPLY
LVLRGAPTALEAAAFSWLIAPILVAWFLSRTGRYEQAHLLSSLALTSLVV
GVAALTGGIQSFAAVWLVVIPIEAALSASRRAVTFAASLALGGAALLIGL
GLFGVLPTPTAGAASSATLAAFGITSAALYASGLAYGAVWLARTNGALLN
VEEERYRLLARNMSDVISRHNRNGAVRFISPAAENLLGTPVARLAEHGLF
DRVHVADRPAYLKAMSDAARGRETGSVEFRIRRDVARDERGRPSAAEFVW
VEMRCRPLESNLTTTAASNAGETEVVAVMRDITERKIHEQALDQARAEAD
RADAAKSRFLATMSHELRTPLNAIIGFSDMILQDDVLMLGPERRKEYAQL
INDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPRPALLNCCNLLALKA
RDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTVTVSA
AVEGTRLVLRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSI
VKSLVRMHGGEIEVQSQIDCGTTVTVSLPLALPAGSNVTTLNPAMPADSP
APDYQVKKSA
>RPA1260 Universal stress protein (Usp)
MNELPRPDMMFGLKVVLAATDFSARSDRAVRRAAALARQSGARLVIAHVV
DDDQPEHIVAVEVELAESALADAIREHTYLAGLQCTPLVLLGTPFDAIVR
AAHQQGADLCVVGSHRRAFLRDIFAGTTAERVIRNSTVPVLMANLDPALP
YAKSLAPVDLTDCSAQALETARQLGLLQRTKLIVMHVYDAAAAGMLNYAG
VDKTSLDDYLVDTRTDAVRDLVRFLEPLRLDDVDYSTVVKEGAGPATDII
EAATELRPDLVVIGTHARRGAVRLLLSSVTEEVLRRLQRDILVVPVRDAG
S
>RPA4009 putative signal transduction histidine kinase with GAF domain
MSEAGAERPSPPRWDEQERLSALERYGILDTPREPDFDDIVQLAADTFGA
PIAAVNLIASGRQWFKAEIGLGARELPLDVSICAHAIVQSGTMVVPDTRL
DARFVDNPLVTAAGGLRFYAGALLKTPEGLPLGTVCVLDREPRPAGISDL
QRRTLEVLARLVMTQLEMRRVIALQDAHARQLEAEMRERKHAEAARRSSD
DRYRALFDSIDTGFCIIEVAFGADGVASDYQFIETNSAFMQQTGLADVEG
KWMRQLAPGHEQYWFDTYGEVARSGIPIRFKKPAKALDDRWFDVHAFRIG
DPGDRLVAVLFNDITARRRGELRRDALLKMGDQLRSLTTIQDMTGIASEI
VGRALGAVRAGFGRVDPGEESVIIENDWSAAGYASLAGWHSLSDHPSFET
ANATKQPVVVADVAAAPPDNLSSQAKDDPGIGSLAVIPIENHDGSTALFF
VHVAEPRDWSDDDLAFLRNVGDRLAAGVGRLDAEALQHTLNLELSHRMKN
TLAMVMAIARQTLRSIPDQAPVEAFNARLQALSTAHMALLQQHWTAAKIN
EVVKGVVGAVEGLDRFTISGPAVSLGARATLSSSLLLHELATNALKYGAL
SAPTGRVTISWKVADEQLIIEWRETGGPAITPPTHKGFGSRLIQLGLIGT
GGVELRYLASGFEADFSAPLSQVQERNAGENR
>RPA0819 conserved hypothetical protein
MLNAFQPIVLSNRIDSIRGNFADPSELITHFKKHLEECEKKSSYVELALD
DLDTFWPPRLVSAVREKGAAVFFGAGLSIPCGIPGWSQLLQNFKIERALL
EDADLRDDPLTMAELASKQVGHENLQETLRILSNQATKFSVNHALLAALS
CPIYITTNYDVLFEKAFKEIHRGGKIPVVVNDADMQTNEVQDALANKDPV
LFKIHGCAERTKEHLILTRRDYRIHYRFNVKFFTKIKSLMEDHCVLFAGF
SHKDPEVSRLVEDIIYDYENHQSGKPAPRFFSLQFQMLSHTPEIFAARGI
VALQPSPAKVISDDSRSLSLANSLGELIARQSHVAAPITDLYDDLKLATD
EISAALQDALKRLESEQASALDILVGRKPPGVLGGLQGRLGHLASQGVYL
ADEQGMVKEHATPPGIPGHLRTISTSLEQRSYFRQARSFRASFVSDVDRS
MFNGRGTFFLCVPLLRDEQMKGLLFSACQIGQWSRPIDIAKKLWAKSISF
VLVDSNGICLLPPNNEFAIEDLQEVSGGFSTQADANVGYPFNKLMALSQR
DRLVGHIGRTVVPVELDDDVLHFSGNFKQFSVIAEVPKTRWKVALSMAIT
K
>RPA1335 probable FecR, iron siderophore sensor protein
MEKNGNPVADVAGHSTMQSEARRWLLRITSGEATAADADALKQWCAQSPS
HARAFAEANLLWDNVEAAAQLPSAVASFQAASLGQPRHSRRWVLGAMTAT
AAAAGAFAVYPPFGLWPSLPELGADYRTRTAERRDIAMPDGVSIELNTRS
SLNIVADQSGQQIQLIAGEAAISCPSRPAQSLSVSAGGGVVRAADAQFNI
RSDSAGSVVTCRRGVVALDYAEQSVSVGEGHQASYADGRVGPIVAVEAAA
VMAWREGQLVFRQTPLADVVAEVNRYRNGRIVLINEALGRRPVEAKIPID
RVDSLIALVQQAYGAKVTWLPGAIVVIS
>RPA0259 HTransmembrane sensor and HAMP domains
MQFDLSNRNLAQKISILVLGITLFASVAIGGVGEMVLHKVTDSHAKQAAS
VASLDRLVGQGGATLSPVRAADGSIVGMLVMQQDAGPVVMPASYEGQGLV
VQASETVVTSTPDYGVGAARTMLLLAGVVVFAVVGLVGTRISRGLLAPLG
ELEKDVERLASGDTSVRIHALSRSDEIGRIARSIAKIQQSLIELAKLKSH
RVLDGTNGILSNLKEMWMDLKGAVSNAREMLFTDGRTVSETLSRSWSSWL
HNGLGVPKRA
>RPA3661 Metal dependent phosphohydrolase
MTDLVLVSRAADFAARRHAGTRRKGADKEPYVNHLAEVALLLTVATDGAD
APLVAAGWLHDTIEDTGVTRDELAEQFSADVAELVVACTDDKTLPKVERK
RLQIEHAPHLTPRAKLIKLADKISNLRSLIVSPPDDWERDRLLDYLDWAE
KVAAGCRGVNDHLENLFDETAARGRAVL
>RPA4094 conserved hypothetical protein
MGLKNIVVFVEPSNAGATRARYAVELARRHGAHLIGIFVASSDGPIPANA
YVRGRDAMRRLIELHDANAIETTSVASRNFNTATNSADITYEFRIIREIE
SDDTKLHCLHADLVIVGHPRPGGLPLYSSAEGLLLATGIPFLIVPDGWPS
GAVAQRVLLAWNASREARRAITDSLPLLSAAQSVSIVVIDSAKNRLHGEN
PGADVAVYLSRHGAHVTTEQIDSNGSPIADVILQHAVHGGFDLIVLGAYS
HARVREAVFGGVTRSLLKLATIPMLIAH
>RPA4565 putative diguanylate cyclase (GGDEF)
MTANSKIANAVYIEFVRLLYTARWPIVVVGCAMLTTGLAVAWQTRDVMMA
VIGLTGMAVTLGRLALCFAFDHAVAKRPLDVETAKRWERRLAVGVISTGV
CVGAFAVRCFLLSDLAAHMIAGGLVFGYCAGTTTRFSIRPWIVQASLVVS
VTPAVGAALWNFDLLHVAQAVLFLLFALGGLELIDYIHATTAEQLTLRAE
ATRLARADALTNLPNRRHLVEHFNELAKRLARHGESFAVISLDLDFFKEA
NDRFGHAAGDEILRIVAGRMTDLLADDDLAARIGGDEFVVVQANVSDAAE
ADDLGRRIVAALSEPYAIAGEAVMLGASFGRALAPADGVTLDELLHKADE
ALYAVKRNRPGRVREVASGADHAPLVPAIDTLPEHDQTAPAMRPTNADAG
>RPA4422 transcriptional regulator, Crp/Fnr family
MTWVGVVDAGRHVEATMKLELGFDPRDLLRKLGPGNSIAKFAKNQTIFAQ
GDEADSVYLLLQGRIKVVVLSAQGKEAATGMVAPGQFFGDGCLVGEATRT
TTTIAMQDCLVAAIPSTRLIETLRAQPDFAELFVRHLLLRNRRIEEDLLD
QLLNCSEKRLARLLLRLADFEEGGEPQPIAPHISQETLAEMIGTTRSRVS
YFMNKFRKLGLISYDRTIEVHPGRLSAVLHDRAEARG
>RPA1634 conserved unknown protein
MKSRETLIRLKKFQVDERRRRVAQIEAMIADFERMSSDLEREIVTEQERA
GITDPSHFAYPTYAKAAIQRRENLTRSADELRVQLEEARGQLSEAFDEMK
KVELLDERDQARERAEESAREQADLDSIGLMRARLGGAGAVA
>RPA1796 putative Adenylate/Guanylate cyclase
MDKSETDDLRARGWWTGLAIAVLLLGLPLAVWLDLTNLADAALRRQASDL
NSVIKSVRHYYAANVVGRILSHPGQVQVIHDYENVPGAIPIPATLSLELG
KVIGEQQSNITYRFVSDYPFANRAPHQLDAFERDALAALRKDSSENIVSA
SAGLFSDSVRLVSPVTMAPACVACHNSHPESPKRDWKVGDVRGIQEVMIT
QPIAANLFSFKFLLAYFVLAAACGVSFLTMQRRQSQKILAMNHELETNND
FLASLSMKISRYIPPQIYKSIFSGQKDVVIHTERKKLTIFFSDIQNFTAT
TERLQPELITQLLNEYFTEMSEIAHRYGGTIDKFIGDAMLIFFGDPETKG
DRADAQACVRMAWAMQRRLSELNAKWRAAGIEQPFRSRIGINSGYCNVGN
FGSADRMDYTIIGAEANLAARLQSIAEPGGIVVSYETYALVSDIIDAHAL
PSITMKGISREVVPYAVDHLRDGSEASAVVIEKMPGFDFHLDTAAVAATD
SERVRSVLLQALSSLDRRQPKAAE
>RPA2367 two component sensor histidine kinase, possible AdeS
MRRHRLSGQITLSMSVVVAIAVLMVFVGTFIFYSIYMTWFPPPPGPPPLL
PEAPDFILIAIFLLLGLAIAIHAALRLTRRILAPLNSLAEGARKIAAGDL
TARAVAGDRSLGETAQLVDDFNAMARRLEDAAESMTSWNAAIAHELRTPL
TILRGRLQGLTDGVFEPSDELFRSLLVQVENLSRLVDDLRVVTLSDSQRL
DMRVEPTDLANEVAQAVDAMRPALEGAGFSIRMTTEPVTLPCDGPRIRQA
LLALLENARRYATPGMIVIRMTLETFEVAIAVEDEGPGLSAEFAARAFDA
FVRAEPSRSRQFGGSGLGLSVVRAIAEAHGGHARYSTSEKGGSVFEIVFP
IDGASADSNAASCAPKV
>RPA4790 response regulator receiver:histidine kinase
MIDDDTAVHDGTRFALSDYSLNNQGLEILSAYSGAEGRELMRAHPDIAAV
LLDVIMETDAAGLDLVEFIRNDLKNETVRIILRTGQPGQAPERRVIVDYD
INDYKAKTELTADKLFTSLTAALRSYQQLERMVQTRRGLEIIIDAASTLY
DFKSMQRLAEGVLTQLASLLNVDCAGILVLRDAGDELAVLAGSGCYSRFI
GTTGHSNSLDPDLRQMVEEAFRRRKHEFADHRTVLYIRTGSGREVVVLLQ
AERELSDTDRSLVEIFGSRLSIAFDNVILYRQLHEANTQLEERVAQRTRA
LTQANRRLSTQWLRLQRANAFKNEILGTVAHDLKNPLGVILGRTEMLTEL
IGAESSKDHVIAQVDHIRDATRRLTLMVDHLISDAMADAFDISIRREAVD
IAALVGEVAEANRPMAQNKQQVISVSTPEACSTMCDSDRMREAIDNLVSN
AIKYSPIGGNIALQVDGDGDSTMIRVTDEGAGLSPEDLSRLFGRFQRLSA
KPTAGESSTGLGLSIVKKIVDMHGGEIIAESPGPGQGSTFTIILPAASVS
>RPA4244 conserved unknown protein
MTYSTVMVALAFDQPNACRLSIAAELAERFESRLIGIAASELSPPVYYMS
GSQAERLMVEGLATIKQRLSELEAEFRQAMTGHTRELQWRSAIEQPSRYI
VQQARAADIVVCGAGVSGLLTDPFASADPADLVMEIGRPLLVVPPNVCRI
DLSSVLVAWKDNPEARRAIVDALPLLRQASHVTVVEIVESEEDHGRAAAL
AGVHDVVDWLSRHHIHAIGEVPEHTGDVSRQITDIARQVGAGIVVAGAYG
RSRFREWILGGVTQHLLEQTSRCAFLAR
>RPA1249 sensor histidine kinase with a response regulator receiver domain
MAGRQRIDRVRRQYNQWVANQTLEDYALRFTAKSSRRWSAARVANTALGA
ISFLALEAIGGTITLNYGVTNATAAILVVSVIIFCCGLPIAYHAAKCGVD
IDLLTRGAGFGYIGSTVTSLIYASFTFLFFAIEAVILANALELCFGLPLP
IGYFFSAVVIIPVVTYGITLISRFQLWTQPFWVLLHILPFAAIAVKSPES
FVAWTRFAGEQGSQDGKLDLLLFGTAASVVFALVAQIGEQVDFLRFLPRD
RRASRGAWWIAMISAGPGWIVPGSLKLLAGSFLAYFALSRGAPPDQAAEP
AHMYLEAFRTVLEQPGLVLALTGAFVILSQIKINVTNAYAGSIAWSNFFS
RLTHSHPGRVVWLVFNVLVALLLMEIGVYKALEHTLALYSNVAIAWVGAL
VSDLVVNRPLGLRPKHMEFKRAHLYDINPVGVGSMTIATVVSISAFYGVF
GPTAKALAPFVALVVAFVTAPIIAFVTGGRFYIARKPKRAWQTAESIKCC
ICEHSFEPEDMAYCPAYAGPICSLCCSLDARCNDLCKPHARIDAQFTDAL
GKMLPQRAYALLNSQVGHYLTVFAVSVGLIGLSLFLIYLQVATANEAQQI
ELAEILWKLFFALTIIVGVVSWLFVLARLSRQAAEAETRRQTQLLMQEID
AHRQTDAELQRAKEAAESANLAKSRYVVGLSHELRSPLNAISGYAQLLEQ
DNTLPPRPRDQIRLMRRSADHLSGLIDGLLDISKIEAGRLYLSRDEVRFG
EFLDQLVGMFRLQAAAKDIEFVFKRPQYLPPMVYADEKRLRQVLINLLSN
AIKFTQEGSVHFIVHYRNPVAELEVRDTGPGIHTDDLERIFAPFERGALG
AAQPHSGTGLGLTISKLLAGVMGGDLTVTSTPDKGSTFRVKLLLSEVTNP
TRTRSIRAPVLGYHGPRKTILVTDDDPAQRGLLQDALAPLGFIVLVATDG
YSCIDLAEHCQPDLFLLDISMPGMDGWTVAETLRTQGHHHARILMLSASA
LEAHGTLLSQPFHDAYLMKPVDIPRLLELIGQLLNIDWIYKGEATATAAN
ATEIQHPPMQHVEELIELGKIGYIRGIESKLDQIHTDYPETWAFVSQMRT
MVEQFDLDTYMKTLNTLYRHEQ
>RPA1295 putative signal transduction histidine kinase
MDAAASRGGRRQGAARQEVSAPSKPQGDDASPLTAGIMQSCTPHPPVLPV
PLPPYSAPRDESVEPALARLKVWDIIHATRRLRSLGLIGDLVAVAAAGAA
LLLRVALDSVLPPGFPYLTIFPAVVLTAFFFGLRPGIICAVLSGLGAWYV
FIPPFFSFDLSPPTTIALAFYVLIVSVDIALIHIMHLAAARLRDDADETA
RLYEQQRTMFQELQHRVANNMQFVSAMLRLYAKRAGDDPAAMLTALDDAR
VRLDVMSRIHRHLYDPASVTRPVGEFFQDLCANLGDAAGASEVRFTVDMP
PVQFDLTKLTPLSLIAVEIVTNALKHAFPDGRGTIALRMVRDGDRIVFTI
ADDGKGMTPAEAPGAGHSLGLKIINNLAAQIGGRISYEVGPGTTARIEFD
RAG
>RPA1175 response regulator receiver (CheY-like protein)
MAVDLSMSVLVVDDYSTMIRIIRNLLKQLGFENIDDASDGSAALAKMRTK
KYGLVISDWNMEPMTGYDLLKEVRADPNLSQTPFIMITAESKTENVIAAK
KAGVNNYIVKPFNAATLKTKIEAVFPDHVAA
>RPA1657 putative diguanylate cyclase (GGDEF)
MLSMPTLWIVFLINFVSLGLVWVHVTRNYPNFTPARYMTAACFVLATGSV
VGMLRIVINVELSLIGGGTLVVFACCLSAMGMYEFYGRRVPWMTSFIVTG
TAALGLTFFIFVVDSMAMRILVYSLAQLVPIALTLPLVTSKVGRRNPGAR
MAAVIACLIMAVYLVRSVAAIMGVGGELSLVHFNDFQSALVLALVFLSMT
WNFAFLLMAIDRLRSEVENLALLDDLTGISNRRHLLQRMSEQCTLSMSTG
EPFAVLAIDLDGFKAINDGHGHAAGDECLRRFSRAAQSRLRPGDLLARAG
GDEFCVVMPGTTLREGAMIARYILDESRAVSERGEAGIKIAASIGIAQWT
PQIGQHPERLIAAADVALYNAKKLGKDRYAVYEPAPEPPPETHLPTPETL
RKIA
>RPA1246 conserved unknown protein
MTKKNGVPFVSDLGDAMRRNPVSTALIGMGLLWLFTGDRAKASAERIARG
TGLDRVPDVASDAIHRVGERFADVGEKLSEVRDSAANAAGETARMARDRG
TEAFERASEFGRAIPEAGADLYDSAKTKLSDLFNEQPLLLGAIGVAIGAG
IAASLPATETERELFGDTSDEMMTQARGYAERASSMARDVAGAAADEARR
QGLTPEAAMAAVREVGEKAKRVVEVADDNVRLE
>RPA3934 sensor histidine kinase with a PAC motif and a response regulator receiver domain
MRPVQDPQGKVIAIVPEAVDITERRKAEEAFRQAQKMEAIGQLTGGVAHD
FNNMLTVIRSSADLLRRRELPPERVRRYVDAISDTADRAAKLTGQLLTFA
RRHAQNREVFDAAEHIEDVSDMLKTALGSRAVFNLDIAERPLPVEADTNQ
FDAALVNLVANARDAMDGHGTLTVSVTRSAPTPQEAAAGSRGFVEVSIAD
TGCGIPREQIERIFEPFFTTKDIGRGTGLGLSQVYGFVQQSGGTINVDSA
IGCGTTITLRLPLSDKPVQRRNGNGINAVDGRQRGCILVVEDNAEVGEFS
TQLLHDLGYQTVLASSGEQALALLGDNAKRFDLVLSDVAMPGMDGVTLGR
EIKKRLPELPVVLNSGYAHMLADEDHGFELLHKPYSVEDLSKVLRKAMAE
RT
>RPA0234 methyl-accepting chemotaxis receptor/sensory transducer
MKIRLSITSMIVAFAVVVLVSLTAMLTTNFMALNQLRVGGPLYSQIKLGN
DLVADILPPPAYVIEAYLEATLALRRPTEWRAHAAKLEQLHRDYLDRQKY
WSGSELDPVLKTRLTVDSDAAVQKFWRAAEQELIPALSAGDEAAAEAAYT
KLDASYAAHRAIIDDIVKRANAENAELETEAARQVGSYSTIVWILSGFAA
LLIALGVAGLAVGMVRPLVRLTAAMQAMAAGMLDVVIPGAGRSDEIGGMA
KAITAIKTNAEHKANQEAAEKSRQEHLVAEQRKADMARLADGFEDAVGEI
IKTVSSAANELEAAAHSLSSTAARSLELAVGVASSSQEASAGVQSVASAS
EELTASVHEIGRQVQTSANVANEAADQARQTNERVSELSAAAARIGDVVE
LISNIAGQTNLLALNATIEAARAGEAGRGFAVVASEVKALAEQTGKATGE
IGQQITGIQAATGESVAAIKEICSIIGQMSEISSSIASAVEEQGMATKDI
AVNIQHAAHGTSQVDQDIARVQAGARETGAASVQVLSAAKSLSSESSRLR
AEVGNFLASVRAA
>RPA4173 putative diguanylate cyclase (GGDEF)
MAVLRLILMKKKPIRPSSSRRSVDRGPPKPAAKKRKLPPAGPRPAPATPR
ARVAGGRLPADPQLKIRRLKAQLAAALAQIDVLRACAETDFLLGIANRRG
FERELGRALAYIKRYGAGGALIMLDVDRLKPVNDTLGHAAGDVVLKNVTE
ALLRHVRASDLIGRLGGDEFALLLWNLDETDARAKALGLEAAVDELAIRY
GDQTIEVGISAGVAMLTPEMDAAEAFALADRAMYARKAERRAASGATIRR
>RPA4753 histidine kinase with a response regulator receiver domain
MAVKSRALRSGRTQVKRTPPKRVRRKKPASSGMIETVLATFAHEVRTPLT
GILAVSELLATSDLNERERRWVDTIKAGAEHLSGLATLFVDAARLGTTGL
GLRSEFFDLRALARHAGDSLSGRAAAKGLRATVTISQRLPGFAIGDAVRL
RAALENLIDNAVKFTERGDVTLKVSAAAAGRGKAQVSFAVSDSGIGLSLT
EIKRLFRPFSQANVSIASRFGGAGLGLSSVRQIARALGGDVTVAQRPRGG
TVFTLTVTLERAKPPQMSTPDGAIRATGGGRLRILSVEDNPFGRVVLNAI
LTELGHSCEFVGNGEAVPERLAKAEFDAVLMDMVLPGISGVEAIRQIRAL
PPPLRVIPIIGVSGRDQDEPAARQAGADAFLLKPVSPRALATALLAASSP
RAAAT
>RPA0561 hypothetical protein
MQRFVCEQNIAHFQKLLETAEDEKLRRTLLGLLSSAKRELALLHSRLSGA
DLSPLAYRNRGGDLNSVLAQIRAGFDASDHPYMLIDAGPGLKIIDINDAY
ARATFTAREAIVGKPLFEIFPDNPAIDTADGVSNVYNSLRAVVETGEPHA
LAVQRYDMRNTEGVFVERYWQSINTPVRDAGGKLICLLHNVEDVTAEVLA
N
>RPA4816 two component sensor histidine kinase
MKHSSLRLRLIAGGAAAILIALSVAGFALTILFERHVTRTIADDLEVSLK
QLLAGIEAGPDGKLVVVRPPTDPRFSEPLSGLYWQVGDDGDQLVRSRSLW
DDRLTVPIDQPGPGEVHHHDIAGPFASRLSIVERRVQLTMAGKSVPIRAA
VAVDLARVDAAGKAFARDLVVALGLLGAVLALATSVQVMLGLRPLAALRR
DVAAIRSGRSSRLPEAVPDEVRPLVEEVNALLEAQAREIERSRDRAADLA
HGLKTPLAALAGDAARLRERGEDKLARDIEAVGAAMSRHVDRELARARLR
GAARRGESVTVELLPLVRSLVTIQSRTPAGRSIDYGIEVADYVAVPIERT
DLAEVLGNLLDNATRHAKSRVRIGTACDADEFCIVIEDDGEGLDEAARTE
VLSRGIRLDQRGEGAGLGLAIVQDVLDAYGWSLRLSRSELGGLKACCCSA
VASAGPGI
>RPA1515 conserved unknown protein
MSMLKRTLVLLGDTPSSLAARAYAFRLVQQTGTDLTGLAGVDLGEIEAPM
LGGIGMSAYQTQLQTELKRQADATRERLQAAFSDECRSRSIACAALSFEG
DAADGFRLATETRDLAIAGHDTGFGGSQEPLSAMIAKLVVRTPRPLIVCP
DELPAGDAVLIAYDGSLPAMRALQVFALLGLGDGKQICVLAIDRDEAAAV
RKANAAAEFLKIHGHAAQAVPSSSGDDPADLIRSAVAERNIGTVVMGAYG
NRGFREALFGSTTDALVDTPPCALFLYH
>RPA1884 methyl-accepting chemotaxis receptor/sensory transducer
MFGRKSKSDAAALTLLATKAVRANIMVSDPELDIVYMNDSVTSLLRDAES
DLRKELPKFNVDTLIGTNIDNFHKNPGHQRQMLKSLASVHRATIQIGPRI
FDLIATPINNADGSRAGVVVEWADASIRLQNLDFAGQVAAANRSQAVIEF
NMDGTIRTANENFLKTIGYTLDEIKGEHHNMFVEPADRDSAAYREFWAAL
NRGEYQAAEYKRIGKGGREIWLQASYNPIFDDKGRPAKVVKFATDVTEQK
LRNADMAGQIAAIGKSQAVIEFDMDGTVLTANDNFLRALGYSLAEIKGQP
HSMFVDPSERAGAAYREFWASLNRGEYQAAEYKRIGKGGREVYIQASYNP
ILDLNGRPFKVVKFATDVTKQVLARIGNERVRGMMETVAAGAEELNTSVR
EISSTMAKSRETAAGAVDRVSNADAQAQRLTSAAQSMSGIVELINNITGQ
INLLALNATIESARAGEAGRGFAVVAAEVKNLANQAKQATDKIGEEISSL
NSISGDVAMALNAIKQAINEVSEYVTSTAAAVEEQSTVTSEMSSSMQRAA
VEAARIAAG
>RPA2292 sensor histidine kinase
MPMTRKSLSRTFLAPWLLGATLLLFIVIAGALVLNLVRLRDSFAWVQQTN
KALLAISAIQQAVLEAETSERGFLLTGIETYRDSYIRARDALAARLDGLR
AVLADNPEQIAHIDELRLLTDMRMAQLGRVVELGPERMREALDILEQARV
DRLTERIETSLSVLTRAEQALLIQRLSKHDRESLAAALITACLLILAVGS
AAIAAFLLEHQRAVTRQQEADQRLQALQAELLRVARLSTMGEMSSALAHE
LNQPLAAVTNYVQGSRRLIEASSHPDKSKISTALDKAAQQTLRAGAVIQR
LREFVGRGETDKTVESLRAIAEDALALASVLTRDRPVDVALSLDPAFDRV
LVDKVQVQQVFLNLIRNAFEAMRDQRERKLTIGSRLVEDDMVEVVVADSG
PGLDALIAERIFQPFATTKADGMGIGLSISQTIIQAHGGSIKAEPAPGGG
TLFRFTLPCSDPIRQHLSFSPAAE
>RPA0494 sensor histidine kinase with PAS/PAC and Response regulator receiver domains
MRVGAVAIAGAFMKLSTRLTLAMVALVLVTTAVLGFLNYQNVVDLVMPRA
LMRLHTHAQLNALLIETSLQNTHADAVGAQSSAALRDLLTARRDGLQSGG
EEPANWRKRIEARFIAEMVAKPSCAILRIIGPEDDGRELVRVDRRGPNNS
IRAVPPSELARRGDRTYFKEGMALPPNRVAMSKVELNKTAAGLETPYVPT
VRTMAPIDAADGTRLGLLVINTDLSGLLERIRESSDGSNIIYVVNADGDY
LLHPDRSREFGFDIGKPSRIQDDFPRMSELLLLRKGGDTPTLVADSAGDR
FGAGWDWAELPNGPRLAVVEMRPYVSLTSVQTAVRNSTILGGTVAILVAM
LMAFPLARSLTRPLVRITNSIVAFSSSGVPVKVKTGGGHEINMLAEAFTR
MASESQRKAVALASEVEQRSRIAEVLQNTIDNMVDPVLVADANGMVILTN
PAARETFGQLSGVGMLNTTRSFDRFDADGNPMAQDQSPLLRAYHGETIIN
FEFAVQPIGSARRSYLIANGRPLRNETGEIQGAVMVYHDITKTKKAEDAL
RRSEQMSRAIIDTALDAFVQLDAQGRITDWSPHAESMLGWSREEAIGQDF
GELALPPDQTREIKTGYRRFIEAIEHDMSVIQGHRIEIEAVRRDGSPIAL
EVSMTALPVEGRFVVNVFMRDLTEKIAFEEQLRQSQKMESIGQLTGGIAH
DFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAADRGAELTRLLLAF
ARKQPLRPDETEVNALLSGLQSLLRPTLGEPIEVETVLAPDTWSIYVDRG
QLESALVNLAVNARDAMPKGGKLTIETSNVVVDPDLGKRFGDLAPGDYVM
IAITDSGCGIPETIRSKVFDPFFTTKEVGKGTGLGLSMVYGFIKQSGGHI
TLDSEEGQGTTFRLYLPRAQIQVDAEAAPAIEQNAVGGTETILVVEDDAM
VRSYVNAQLKSLGYTTLSVGNAAAALSIGESDTAFDLLFTDVVMPGPMNG
VQLAAEMIKRRPGLRVLYTSGYSENALIHNDRIDSDVLLLSKPYRRSDLA
RMIRRALAASQEVEAARSTTTTTTTTTAAEPAKPSRAAAARPA
>RPA0886 putative diguanylate cyclase (GGDEF)
MDTHGLFNKISKELHRRRRMSARVMVAFSLVTVLGFSAVCGSVLLDMRRG
AEELARQTLENLAASMDADINRNVELYDASLRAVASNLVLPELSQVDAKL
ARLILFDHPVTGPHFGAIRVYDEHGNLTGDSALTNPQKENRASEPFFTVQ
RDEPYVGLYISKPQQVDGHYSVILSRRVTGSDGRFLGVVAGSIKFDYFQD
LFKRLRLRPQDMIAVIAHDGTLIVRTPFEPELIGKNMLVTSGVQKMFGRR
NGWFAGTGTLDGVKRMFVWSDSTKPLVVLVAKSWNDIYAMWRKEATWIGI
VLLALAAFVAAVTVFFIREIERRAAAERRLEELATTDPLTGLTNRRKFDA
AIDTEWRRAIRQNTPIALLMIDADHFKAYNDSFGHQAGDQMLVGIAVCIA
DTVHRAGDCVARFGGEEFAVLLPGLTAPAAEAIAETIRRKVEEWSDIEGG
VTVSIGVASTTPIAAHQWYDLVEAADRALYAAKELGRNRCVVAVRGEVTL
VA
>RPA2432 putative signal transduction histidine kinase with response regulator receiver domain
MTDAKPTLLYIDDDEALGRLVSRGLQRQGFCVEHVLSGEAGLERLRQGGI
DVIALDQYMPGLDGLETLEQIQAIPDPPPVVFVTASQDSKIAVTALKAGA
DDYLVKDTQGEFVPLLQVAADQALKQAMVRKARDDAEAEVRASRDRYAAL
AAEREMLLREVNHRVGNSLQIIASLLHLQASSSKQDEVKAALTNAMGRVA
AVAQVHRRLYTSHDLKSVMLNQYLESLLEDLRRSAEGNRMSRLTLSAQPV
ETDPDRAVAIGIIVNELVMNAVKYAYPEGKGPIHVELKADGDDLELVIAD
EGVGLNVKANPQSTGMGQRIVSAMAAKLEADVERDPNHSGTRMVLRFRRA
NATAAAAPEPAAP
>RPA4638 methyl-accepting chemotaxis receptor/sensory transducer
MPMLSRLSIRTKIIALVALLLVALSGIGGLGLLKMRTLNDSTVDIATNWL
PSVRVLGDIRTTLAMYRVTLRAHAMETTAEGKATAAKRIAGVEDVINKQL
SSYQKMITTPEEKTLYEEFSKELNVYLDGAKKAVEMSQKSVGQSTAELGE
YLTKTLGPIGSRVDAILQKDVDLNKKGADQSTALAEATYSSAVTIVVTIL
VLAVAFGFIASYLVIRDISQGIASIIAPMQALGQGNLAAEVPHRGEPTEI
GAMADSLQIFKEALIAKREADQAAAREAEEKIARGQRVDAATRQFEAAIS
EIVETVSSASTELEASAGTLTSTADRSQELATSVAAASEEASTNVQSVAS
ATEEMSSSITEISRQVQESSRIASEAVDQARKTNASVGDLSEAAARIGDV
VELINTIAGQTNLLALNATIEAARAGEAGRGFAVVAAEVKALAEQTAKAT
GEIGQHISGIQSATNESVHAIREIGQTIGRMSEISSAIAAAVEEQGAATQ
EISRNVQQAAHGTQQVSSNITDVQRGATETGSASAQVLSAAQSLSQESSR
LKIEVTRFLDTVRAA
>RPA0767 putative diguanylate cyclase (GGDEF) with PAS/PAC domain
MREDSVASLLSDEARARLYDQALTAAGIGAWECDLATERLNWTSAVYGLF
GYPIGNPLRRASIVDLYVDESRRHMELARAEVIQSGRPVTLETEIRTWRG
EMRWMRLSINALREGGRPVRIFGCKQDVTSDRLAIEHLRQQAETDPLTGL
ANRARFQERYREVVSDRLHHGFASALVLIDLDGFKELNDTLGHLAGDACL
CEVAQRLRRAFNSAGLISRLGGDEFAIILRTPTSAERIADVLRRTIVMLS
RPLFWNGHRIKVSASIGAALIGRPHQRRIADLFAEADLALYQAKAAGRNR
VSLIGDQAQSRAA
>RPA4138 conserved unknown protein
MDQEERDRFEIPKEVRSMAEAGFDQARKAFEHMLSSAQQTAATIEDRGAA
ARANAKEITGRAVSFAERNVHAALDYAQQLVHAKDLGDVMRVHSEYVQSQ
MKAFAEQASEIGQVVSKAAQDVTKPKS
>RPA1642 putative diguanylate cyclase (GGDEF)
MTISADPDRDWKNRISAQALRQIQELDLALDPNSFELWYTFFSGRHKALT
EAVNALLAATGRPSAGDISGLYEQFLYPTKAVTRIHAIGALVHSQSNALI
DVIEEASDATHGYETRLSSAAPRLALGRMEDGLQTIVDELLTWTMDIQTA
NAVLVDRLRSAADQVRKLQDQLDQVRLESMTDPLTEVGNRKYFENQLSLH
VASDDSGPLALLIVDLDNFKQFNDRHGHVVGDDVLRLAASTIKHNCRRDD
VVCRYGGDEFAIILPRTPLREALLLGEAIRAAIAARELHRRSTHESLGRL
LISIGAAEFRPGETADDFVERADHWMYAAKQARRDRTRPGPDAAARDPGE
RRPDILWHETYACGEPTIDAQHRELFDLANVILGPEIEMLEPARLSELVE
LLLTRVAEHFQYEQAVLEASGYDECGLHRMEHDHLLIRARQVSEAVVSGH
QSLGELRAFLVNSVILGHMLKDDRRFFPLFDRQASSATQSGAAPVHRERR
RLSL
>RPA3958 conserved unknown protein
MANNPKKIKDPTEVALSAIQEALNIPDAPPAGDDQAAGPKESVPNSDTPE
PSFSELTELAGEPRITPPAPSFEPAAERSFASRPANDDRETIGQLLQSLQ
KGRTTRNVYTLATIFAGVWVFGGIILTVSFLPALQALVGQGSGGTLALAG
LAALFFAPVMLFYFLASLAWRGQELRMIAQSMAQVAIRFSEPEIAASDSV
VTVGQAIRREVAAMGDGVERAIARASELEALVANEVSALERAYSDNEVRI
RALLQDIAHQRDNLVGQAEQVRSAISGVQIDLRHDIALISDAIASRVDEV
AKSITSALEERGAHITSALGHAGDNMILALGERGGELLDRLEEASSETTR
AVLDASERLTTSLNFKTGHVHAEFVELADRVHDMMNERLDRITTDFEQRS
STIIDGISERTEQVQDSLKNSGDSLLLELELRSTDLVNKIDDAGHRLADQ
ILTSGDKASEALDVTVNTLVAKVVSQTEATHDTLSIQMSAFDDLVKLQGT
ELAEKFARDSGTLGALITRHISEFDRTVKTFGGEIVERMGQRTQDINETL
KTYVDNFDQRVATGSGEITARLDDRLHQFESLFDTRVGSLDGAIDNRLKA
LDDTVGNHLNSLERILDTRTEAVTGNIDGRIEKLALTLSTGAANAVEAID
SRIVQLNTTLSTGTSSAADIIDGRIATLTTTLSTGAANAVEVIDDRITTL
TTTLSTGTVQAIEAIDSRLTHLTHSLTDGTAQAIDAIDRRIGAVTETIDS
RTANLSTTVSARFQEIHDGLENRVTAVINDVDLRVSQFEDLLGSRIEAVA
GRFESSGREASEMLMTRAEELSQGIKTNVADAERTLTHLVVSTSDTIRSS
TQSARESMLSVSNDVGAQLQVTSAEIERALTTVGTTAAATVVSSATEAQA
KLTMVSSEAVMQFRSLSDDIERTLSAAGTATVATVLAGAREAQTTLVATS
TDVTTQVKSLASDIERTLSEVGGHAAASLLGSAREAQTTLTSTSTEVATQ
VKSLASEIERSLTEAGGSTAASVLSSAREAQNALTTTSADVANQVKSLAV
DIERTLTGAGDTTSASVLASAREAHATLVSASSEVTGQIRSLSTDIERTL
YAAGNATAEAVLSGARSAQSTLVLASEEASDKVKSLSADIQRTLVEASSE
AANQVTTLTADVERRLSASGTNTIETIVAGAREAQNTLVASSTEAANQVK
SLASDIERTLTAAGSATAGTLLASAREVQTTLVSTSTESADQVRSIAADV
ERTLVAAGRSTADSILSSAREAQTSLATASGEAANHVKSLAIDVERTLTS
VGAATASTILDSARQVQSTLTTSSVDAASQIKAISAEIEQTLSALTTNTT
DHIQVSASAAQATLVAMSNEVSAKIKSTSADVERSVFAASGSFGSTITAK
SEEIVGYVQQQAERLSQIIDGKRGVLVEAIAGKTNQLTVEIDRVTSDALT
AIESRGKTFSNSILTNGTEVARSITGAGDLATNAINKSLKDLDLASRSAI
EQSRQVSITAVTEMQETSKILRTDTVALFERLREGNILLQEVLTGAHENL
NSLERALVTRVADFVTTMNEVNARSGAATQTLEDQLTGFHTKTARALEDL
GALSAQFEAHGHALAEAADLLEHSNRQASTSVSDRKEALESLVTTLDLRT
ADLDQRLGRFTSLLDESLAAAEERARDVARIVAETAGAGSASITQQFEAV
RSAAEQERRLTVEAMHQVYKQGTQEADALFKQSADRFTSIVQGIKQMAAE
MQHELESTREELRRGVLEIPQEAAESTAQMRKVIVDQIEALAELNRIVAR
HGRGMDVVTPSRAATVTTREEEPVLAAASVGRAETVAARPAPRSRESSAA
TLPPPDLGMPAGPRRTEAPPVAPSNADQGRDGWLSELLNRADTSAEREPP
RGRAAQQAQAAMSGNPLESLSLDIGRLMDRNLALEMWERYQRGEAKSFTK
RLYTPAGQKAFDEVARKYRSERSFKQTVDRYIAEFERLLDEVARDENAPQ
ALRGHLSSETGLVYTLLAHAAGRLG
>RPA2369 pseudogene-two-component transcriptional regulator, winged helix family
MNELILIAEDEPEIAKILDAYLVREGYRTVNAADGQTALDQHAILKPDLV
LLDVKMPKIDGWDVLAELRRRGETPIIMITALDQDLDRLQGLRLGADDYV
VKPFNPLEVVARAKAVLRRSGYAKSNASPHRKPGDRS
>RPA0783 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
MTSAAPSSPSTVTTDVAESDEAPSTDAAGIAAAETGDLRLFKEIVRALPS
AVTVQDEQGRFIFINDAAAAQYRLPPSSTDAAGNLPLDRRRSDGAALLAQ
GQSGTREERITFGGATRALLTAHKPMDIAGRKLLLSSSLDVTEQKVIEDE
LFRRAYYDELTGLPNRAVIERHVTELLEDHRPHHFALAFLDVDNFKHIND
YYGHSVGDALLVGIAKRLSLELRDTDVLSRISGDEFLLLLDPITSEAEVA
EHINFLLQRLKAPFYIDGTEVFASASIGISLYPEHGRSYEALRQNADIAM
YRVKSDGKGASAIFNIAMEREALERMAVEQSLRQAILDRRFCCAFQPKVD
IRTNEIKGVEALVRLRDDNGVIQAPGTFVDLAVELGLIDELTHLVLAEIM
KSIDLINATFGEDASISVNVAAKQAGSPDFMRSFCEALAATECPKRFMVE
ITEDAFVAKAHFQKQILPMLREIGVGISIDDFGIGYSSLSALADITADEI
KIDRSFITDIHKRPRSQGILRAIESLSDALGMAVIAEGLETFEELAYLQA
MTRIRYAQGYYYSKPIFLEELRPTIPVFSGGRPGGPGRHLEQARQPLTRA
TYARR
>RPA4789 sensor histidine kinase
MKLSGVRSTELDPVTPQPADTEPRPDRRGRTGLVGLVRAVPIRWRILSIA
ALNSLVVLVLVSLIWSGARVLRTAWDDVRQVRESDKILALLESETGRLQN
LIHRYINQPSPDLFAEILLLREAVLGTLTNRASTDPMLSGSVEELERATE
RFLGGFGDLRALQTTIKSTYENQVQAPARDIAALFAVIGGATGQRDALIL
PPLGRAREAFTAMLVAANSYYLSLSQQAAEEAQQNTETIERTIPVMSSLA
DNDLQKMALEKLKLRTTALRDGLQELTDQLAKRSDLLRNSIDASQAATIA
AIDALSVKMRQREQKAQETFDRTLTGISRKVLSIALIFLGIIMTAGIIIA
LSIRLPLQQILSSMHAITSGNYDRRVAGTEAKDEIGAMARAVEVFRENAI
DKRKAENDLRESKEKAESALLELKTAQQNLIDAERLAALGSLVAGVAHEV
NNPIGISLTVASSFTRRATTFEAELKGDTPLRRSQLDEFVRSTRDAAQQL
VGNLQRAAELIQSFKQVAVDRSHAERRQFNLHEATDQIVASLKPVLKRAP
IRLDIDVPESLVIDGYPGAYGQILTNLFLNAANHAFTDGRAGTITITARP
RGNDDVEIIFADDGAGMTPDVQRQAFDPFFTTRRNEGGTGLGLHIVYNLV
TQQLGGRMMLESRLGQGTTFRIIMPKTATGGTASAAPPIDGNLQWPTRTI
SSS
>RPA1248 two-component transcriptional regulator, LuxR family
MNNDLKKRDIALVVDDSPETLRMLTDALDGAGMTVMVALDGAAAMRIVEQ
ITPDIILLDAVMPGMDGFETCRRLKRSPGLSDVPVIFMTGLSESEHIVRG
LEAGGVDYVTKPIAIVEMLARIRVHLNNARVSQSARAALDVSGRFLLAVD
RLGKVLWATPQAQKLLAADGAPEDGLRLDLPKPWLEWLEQVHTGLAQPKV
PMKSSMLRNDELRLQYMGKLGPNEFLLRLGRDTSAEAPTQFSAEFGLTSR
ESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAI
ATNASRRD
>RPA3933 sensor histidine kinase with multiple PAS and a response regulator receiver domain
MAEDTPGGHLGRIDAVPDSLFLGRGELASLMRAFDWASTPIGPPESWPQA
LKTAVRIMLTSQQPIWIGWGTELTYLYNDPYKSIIGGKHPWALGRPTSEV
WSEIWEDIAPLLAKATSGHEGTYVEAQLLIMERNGFPEETYYTFSYSPIP
TDDGSPGGIFCANTDDTQRVITERQLSLLRDLAASAAESRSVGQACERSA
AALATDPQDLPFALIYLTDLGGGHAELAASSGIDASHPAVKPTLALAGGD
KPWPVAETFRLNAPVVVPDLRDRFGVAFPTGGWRQPPTRAVVLPIPASGD
TGRSGLLIAGLNPFRLYDSAYQDFLALVSGQISSAITNADAYQEERRRAE
ALAEIDRAKTAFFSNVSHEFRTPLTLMLSPLEEALGRDGIADEQRTLLGI
AHRNGLRLLKLVNTLLDFARIEAGRVTAHFTPVDLSSFTAELASNFRSAL
DRAVLRFVIEAPPLPQPVYVDRDMWEKIVLNLLSNAFKFTFEGEIVVRVG
PDPDGRHAVIEVSDTGTGIPEAEIPHLFERFRRVEGARGRSIEGSGIGLA
LVQELIKLHSGSIDVESEIGRGSTFRVTLPFGSAHLPADRPRHAALQVST
NVRAQAYLDEAIGWLDEGGDADLPPASGAQDLGIVSAPAAGRPHILLADD
NHDMRDYVARLLGDAYEVEAVGDGVAALEAVKKRRPDLVLSDVMMPRLDG
LGLLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARE
LLTRVRANLDTAAIRRTALRTEYALRQEAQAARKHAEGILASISDGFIAL
DEQYRFTYVNAAAERLIASTAEELIGKVYWDVYPMMLGTKIEQAYRRAMT
ERVACEFESYHPPSKRWFELRVAPTNGKSISVYFRDITEQKKAEAALRDI
NEQLEEQVAERTAELQQKEARLRTIFAASYTYQALLDVDGVVLDANRTSL
AGIGGQLEDVIGKPVWATPWFGSTPGLPEMIRSDIAVVAAGETVRRELHV
NLPAGAGSICRCARCKTRRAR
>RPA4417 sensor histidine kinase with PAS/PAC and response regulator receiver domains
MSGLWQSMTTAWMSRTDRSALLDFWLGGRGAGTLIANTDIDEQEMRRIRA
AQINSVTRLTPVTMSINVANAALILFTFWDNDARPQLLAWTAMIVFAAGS
AVQSWLRNRFEPRLEASAHAIRRMTLHALLLGLIWGAMPVMVFVKADPGD
QLIVACVAAGMISGGAFTLSTVPRAGLAYTWSLAAGSALSLALCDGMAYR
ITAAFLVLYAVFMSRNLISHGEMFFDNLRAKFELERQTEIISLLLKDFQA
NASDWLWQTDAHGRLVHVPERFVEVAKLPPSLLIGAPLADVIGMLCPEDG
RCAMGVAAKMAQREPMNDLVVHVVIGGTPRLWSLTAKPMFDAAGEFAGYR
GVGRDVTERWRAEQAEAENRAKSSFLAMMSHEIRTPMNGVLGLANSLLET
KLDPEQQQAVTTIRDSGDDLLRILNDILDLSKLEAGRLEFEQADFSPTTL
VESVRAIIEPEVRGKGIELKVDIDPRLPPSLNGDAARIRQVLLNLAANAV
KFTEQGSIAIVLTCVKRNDSHATVEWQVTDTGIGISPDRVGSLFTDFAQA
DVSINRRFGGTGLGLAISRRIVEQMGGDIAVTSREGEGSTFRFSLDLPWS
NAWIADHRLDRLGSDDLRTRIAMLGRPLRVLIAEDDSTNQMVVMKMLQEF
AAEITVVSDGTDAVQAAGEGEFDVVLMDVRMPNMDGLAATRAIRGKGGAL
AKLPIIALTANAFPDDVKVCRDAGMNDFLAKPLRKPALVAAVLRALRGAS
TPVTMPSPPMLVDLDTLAELTAEIGQDQVNEMVALFFAETERRIALFRRF
AEHMDRHDLEVEAHSLKGGARTLGFHPIAEIARSIEREAGSISPEALDLF
TGQLNKALIELRRQCEGSLKLAS
>RPA3750 methyl-accepting chemotaxis receptor/sensory transducer
MGSWIKKLGLSWKVQLAPAFLVLVMIGIGAFALVSLRDNQQNVDKLVSGP
VRLSELASDLNNAAWTAHAKLYRMAATAANETDAAKLTKVMKETTAAVAQ
IPAALGEVEKALGADAAKPPFQKLKAAVAGYQKQAKNAVEMADGDAGSAL
LFIKSAEKSFTDIDSLVSDLILATNDSRDREIAHTGIALEREQWMLGGIV
AAAALVGIAFSFLIGRGIARPVVAMSGAMRDLAAGNFGVQLPGLDRGDEV
GQMARAVEEFKVQAVAKAEREQAERQRQEQIAAESRRAELHQLADGFEAA
VGQIVEQVGVASQALEASAGALAKGSAETQQLATMVAAASSQTSTNVQSV
ASATEQMSASVEEIGRQVSESRKIADEAVQQAEQTDARIAKLAQAANRIG
DVTQLITTIAGQTNLLALNATIESARAGEAGRGFAVVAQEVKALAEQTAK
ATDEISAQIAEMQAATRESVDAIKEIGGTIGKIAHISSTIAASVGEQGSA
TQEIARSVQQAAIGTNQVAASIGNVNRGAADTGAASDEVLTSAQLLSHEN
NRLRAEVAKFLATVRVA
>RPA4368 two-component transcriptional regulator, winged helix family
MIQLATLTKKPIRPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAQS
VRDARAKLAGLDFDLLILDVMMPGETGFDLARSIRETSDVPIVMLTARHE
AESRIEGLQIGADDYVAKPFEPRELLLRIGNILKRTAPAPAAKAETVAFG
PYVFHIERGELRQGDEIVHLTDRERDMLRMLAAAPGETVPRGDLSGAGNA
NERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRLVAAP
>RPA0286 putative diguanylate cyclase (GGDEF) with HAMP domain
MSRIAIVRKKAKLRALLGIRARLVVLALILVCPLMLDRVRLLEATRTAQL
AAMANELSTLAQRTADAEREVISSVEAVLKSAAYVHAAAAQAGRSCSILR
ASLRVDLPSIRMLMVAGPDGVVHCSTSSMFVGSNISDRPYFRKALETHDF
VVSDFLVGRQTQKGTILAAYPVSAIDTGEEAVIVAGMNLDWLSDMMSSLA
GRAGVNAALIDGEGTVLAAPPDERSLIGKKLDRLALLPAMAETPQGRSSI
TMRDDAGRLMTVSRIPGTSARLVVTVDENKVSAGINHDIRTAYLQLALVC
LFVLLGALIAAERLIVQPISVLTGVAKKFAEGNWSARVARKRLPSEFVPL
ARAFNAMAAQLGQRERELVASNSRLTVMASMDLLSGLANRRGLQSRLDFE
WMKGQQTGHRLALMMIDVDHFKLFNDSYGHPEGDACLSRIGETLAAVADQ
TGGFAARYGGEEFCLLLPETGIGRALQVGELVRTTVEQLALPHKTSAFEH
VTVSIGVACTLPSEHASPAELIEAADAALYAAKHRGRNNVVEHGFIRASD
GPVAMAS
>RPA3571 two component sensor histidine kinase
MSLRTRLAAFGFGLKPDGIRGQIAILVLASIIASHIIIAAAFFANRPDMP
RPPVLPEPHQLYEFAELIGRTPAAERPQLIATVAAAFPQLELAATTAVAR
PPNGAWTPHQIDYLRRHLGPDYRVDLAGDDRMVITLPGGDAISARLPPER
RRPVLGNPWMASLLIGVVSLALLGLWAARTLAAPLSAFATAAETFSLDSS
DAPLPERGPAEIRSLARALNRMRERITTLIEDRTRMLAAISHDLRTPITR
MRLRAEFIEDDHQRTQTLHDLDQMGAMLTAVLTFLRDGATRDAPTLIDLA
SAMQLITDQFADIGAKVAYQGPEHAMAMARPGDLHRAVTNLVENAVRFGT
EVTIRLALDQDQIIIEVEDDGPGIADADKDSVMQPFVRGDDARNMDDSSS
FGLGLSIARAIARGHGGELSLHTRTPHGLIARITLPRRTPSRAA
>RPA1670 Metallo-phosphoesterase
MLLGLFADIHANRPAFTACLANARERGIERVVLLGDYVGYGADPDWTVST
VRDLVADGAVAVLGNHDAAIGNPKVQMNAEAEAAIEWTRGQLDSAQRKFL
ADLPMRQEEHSLLFVHSEATRPESWIYVTDTAIASRSMQSVSAHVTFCGH
VHKPALYSLSVTGKMTTFVPTTDVPVHLLPGRQWHAVLGSVGQPRDGNPA
AAYALYDTVKHELTYCRVAYDASEAARRIRDNGLPLWLADRLLVGR
>RPA3170 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains
MRRHTSSLDDQSLWRVALDYARDAAVIIDDGGHICYVNQAAERIWGIGRA
DLVGSHSDCLGVDAIQPEPVAGSHLTNAASDLPLAIDITSRDNRSITAEL
TRSTIRVDGLNYTMLTVRDVTPELERRKGIELLTSIADRTTRAVLVTDPE
LKLLYTNAAFTSLFGYSAEDAKGQNIIDLLSGRHTNRRTIAGLKRWIADA
EGGEEEILVYDQNGDEIWISADVKALRNAQGRITQVFALLTDISETRQLR
MLQQVTLGALADEIPITDVADRMCRFVEKIAPDVVSTILHVDAQGLLHPL
GGPNLPDDYSRALDGVSIGPMVGSCGAAAYFGRPVLALDIETDPRWQPFK
KRPLEIGLRACWSSPIKAKDGRVIGTFAFYFRACRPPSRWHHRIVDACLH
LGALAIERMESRAQIARLAYFDMLTGLPNRARLRDLIADATAACPHGRTV
ALAFLDVDNFKDINDTLGHAAGDEFLVEFARRLRDQVQPGDVVGRLGGDE
FVVVLPNREPAEIEPVVARINEALMLPFALCNSQVPMSASIGVSLYPDNA
TDIDSLINQADTAMYRAKRSGRSTYRLFNCDMHGAAEQRMAYAAALRSAL
ANNRLELHYQPQIRTSDGALHGVEAMARWHDPVLGPVPPTKFIPLAEECG
LIDQIACWSIREACRQMRVWRDQGLEVPSVSVNLSPINFENAALPTLVAD
TLATYHLPPEALMLEVTEGVAQDDRSAAHDTMAALRRIGVGLSLDDFGTG
YSNLNRLAQLPIRELKIDRGFMSELETSPTARTVVTTVVRVGQSLALSVV
AEGVETTAQFQLLSDLGCDVAQGFLYAPALAPAAFEHWLLGYSASRAGTM
MERIEPTTADHRPAPRTATRRRH
>RPA4482 putative sensor (PAS) domain for methyl-accepting chemotaxis sensory transducer
MAVEIRPTGKEVFFPAGELIVSKTDLKGRITYANSTFCHIAGYNEAELLG
QPHSIIRHPDMPRAVFRLVWDTIAAGREIFGYVKNMARSGDHYWVFAHIT
PSFDEHGNIVAYHSNRRTPDPSVVANAIAPLYAEVLRVEQGHANGKQAVE
AGLKALTDFVASKKVSYDELMFALQSAA
>RPA3200 putative dual serine/threonine-protein kinase/phosphatase
MAFGSFARSGGSSRFLFTAGRMAQQLTVSIGQASSPGRKPVNQDFYGALI
PAEPLLITKGIALALADGISSSDISQVASESAVKSFLTDYYCTSEAWSVK
SSAQRVIAATNSWLHAETRRSDYRYDRDKGYVCTLSALVIKGAAAHLFHI
GDSRIYRLAGASLEQLTEDHRVRLSAEQSYLGRALGVNPQVEIDYLSVPI
GSGDLFVLATDGVYEHVAHRFVVQTLRDHGDDLDAAARAIVGEAFNNGSD
DNLTVQVVRIESVPGADSIDLFERVAELPLPPLLEPRAEFDGYRIIRELH
GSSRSHIYLASDLATGELVVLKIPSADLRDDPEYRKRFMLEEWAARRIDS
PHVLKPCVVQRPRSYLYVTFEYIEGQTLAQWMIDHPRAELETVRGLIEQI
AKGLYAFHRKEMVHQDLRPANVLIDRSGTVKIIDFGSVRVAGVAELGPAG
GDELLGTVQYMAPEYFAGQGGSALSDQFSLGVIAYQMLTGRLPYGAELAR
ANQALKSRKLRYSAAADHNAKVPVWVDRALQRAVSLDPAKRYPALSEFVH
DLRHPRADYLDARPQPLAARNPLLFLQLLSALLALIVVGLLARLHGSI
>RPA0991 possible transcriptional regulator, Crp/Fnr family
MHCLFRSLVDRGTGVTDTSHRPNNNLLRALSATDFELVRPHLRCESRAAG
DLLYRPGDHVGSAYFPCGPSLVSYEVTDGDGRGVETVLVGREGAVGGIVS
SGFLPAYCLINVKFEGPFVRVPILNIQAAKDRSPSFKNLFARYADCLMAQ
MFQATACNAIHSIEQRTAKWIAAAMDRTGDTMVPLTHEQLAAMMGVGRSY
TSRVLQAFRHEGILTTRRGALIVDDADKLRQRACRCNEAIKDHFDIVLRG
VYPEPDDAAVA
>RPA1972 sensor histidine kinase
MMSESAEKPEVFQLPAEPPVAAPARNRRAAAQRVREARDRLTSTSGTRPA
FDHELVRQYAETRLSASYVVMLLVVVTGVLFGIWMDPLAAGAWTVAMLSI
HAVVIRNCNRFLKEPASVPRTRTWRRRFVLLDLLYGLAWTAILIHPTELN
VVSSTLLMFLMLLVVAVSSMLAASLPIAALAATMPVTAAIAVNFALSGSF
DKYVLAALTVAAEGYFALLAHRLHSTTLATLQARAEKDVLIAELEQSKAI
SDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV
PAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTD
CHHLLKLRATSRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTP
QGGEIWLKAGWTASGGQYLSVKDTGSGIPEEEIPIVLASFGQGSNSIKSA
EQGAGLGLPIAKSLIDMHGGTFTLKSKLRIGTEVIVTFPPERVMSALAPL
ADEAPPLQPDSVDTSENARARRQPIMNAGTGL
>RPA1716 putative diguanylate cyclase (GGDEF)
MARHLESQLDFIFFFYGLSFILLGALCLVLARGQDDDRGATIRWIGLFGC
VHGANEWLDMLALIAGDGTEFMVVRTVVLIVSFMLLAEAGRKGGETHGLP
MPGPWIYIPIFIGLGAIGFVDGLASAKAAARYLLAAPGAVLVAFTAFTGR
NDDIRINRPLMVGVTIAFAGYAVAAGMIVEFAPFWPANSFNQETFLRVTG
VPIQLVRGLIAVALAALVWAAWGRRVMEKLDYPGYSLHLKRQFIDVLTTL
LLVLALGWALTNYLGEIYREGVESEATGDVTLLVSGLERETAIADAMVKA
LAASPSVQPMLAGREGNRVAELSLLELDAGVIQATRGLIVNRAGDIVGSS
DSSDQSWLGMPNLRSVDWFEQSIAGRAVHQIRVDPPQRLRTYLTASPIRD
ADGEIQGVAMLETSLETLAELMTRFDQAFFVVDARGLVVITNRRDELFRT
LWPRPDLPRLQIAEQFGASGRPMLAREIFGGDWVEFGGRRSYVLRQPIDG
TQMSLILAIPVKGIFASRLLGIIITLQVAIAALFYFFGMDRGVRDRFERQ
LREELLIQTEDLARQAATDSLTGLANRMKFDARLNEELSRSLRNARPFSL
IIFDIDHFKEVNDIYGHPVGDQVLVRLSRTVDASIRQADLLARWGGEEFA
ILLPDTDAAAAYETAKKLRLLVAHTIFEHVGTITASFGVAQVLPGDHADT
LVARADNALYRAKLNGRNRVELSLPVIEVVELSPTA
>RPA2479 methyl-accepting chemotaxis receptor/sensory transducer
MRERLVRRVGTLRVGVPAMQLSNVKLLYKIIGCFLLLSVVVGFGIWFAAS
KMEEIDRTYASMLENEVQGMKANFRANARLFNFGRMSWRIIAETDPAEMQ
KLSREIAANHKEFSDFVAQAKKGLPQFAADFDRIDRMFDDMMTKEYPPLE
QATMANNNELAVRLAKDIAKHNQSVRDVQFAISNKLDKELSDRSHAASAD
VASTIKLTILVVGGGFLAVLALAFAIVQFGIARPIGRLVGDLQAMARGHD
VEVSGTERGDEIGQTANAVNDIKLMLAEKARQEAAGKAEQDRIIAVQRKQ
EMEKLAHHFEAAVGEVIRAVSSASTELEASATTLTSSAQRAQEVTTSVAA
ASEQASANVQSVASATEEMASSVTEISRQVQDSARIAHEAVTQAQRTNER
VGELSQAATRIGDVVELINTIAGQTNLLALNATIEAARAGEAGRGFAVVA
AEVKALAEQTAKATGEISQHIGGIQAATHESVNAIREIGSTISKMSEIAS
TIASAVEEQGAATQEISRNVQQAAMGTQQVSASVVDVQRGANETGSASTQ
VLSAAQSLANDSNRLRMEVGKFLETVRAA
>RPA1818 putative diguanylate cyclase (GGDEF)
MAVREIPRECRWNQSTSGLYQPLRANGRYQNERLFLVGSPRAKSTGRTMG
PTAALSGTLPDPQTRAEDARTLAVRGRRMRQRRHMLDLIAASFMIDAAIL
LIYVQAGTIPSMVVVAFAVSGALVGGILFALSESGFNDRFSDHYLTVPIA
ITTLALIIAFTVWAPQIGAFFLFELFVVFGFASLRADRRQALILWSALLC
ALVPLFLLTDLPIGMPHDNSLERLATLLALVLTVGRCTFIGVFSKALRDS
LYKRGVQLREAYQRIEELAELDELTGAYNRRCIMRHLDNEIERAARHCES
LSLALIDLDWFKRINDTFGHPIGDEVLRTFAITIFANIRSFDRFGRYGGE
EFLLLLPNTSDDEARLILDRLRMIVADLDWSAFSPSMMVTLSAGVTTMTL
QESTEAVLARADRALYEAKHGGRNRISCA
>RPA1600 BolA-like protein
MPMDARDIEAMIKAAIPDAEVTIRDLAGDGDHYAATVISETFRGKSRVQQ
HQIVYQSLQGQMGGVLHALALQTGVPEA
>RPA1850 methyl-accepting chemotaxis receptor/sensory transducer
MRQLYSASKHALRSSFNRIKIGLRFKIAMLGLIGVALVGSACLLGLRESA
DAERRSEASVALRFDVVQLSADYLQAGLIANEFLRTSDDKLIAKHEAAAT
AAKRRLQDIERRLGQSESDEAAKQSTALLTGLNLYLTRFQNLLSAKRVLG
LTEHDGLQGKLRDATRRLEAKLAEIEDPRLSVQMLTMRRLEKDFILKGRE
KDGDDLIERASDFAGALSKTDLAADQEKELTALIGGYKSSFLAFMVSQQS
LNEEIEDFGSVFARNRPTLDALITSAEARYRASQASAAQVRNLLDWIIGG
VTLGVAALALLVGQRIAGSVTRTTAAMQRLAAGDFEAVLPGLERRDEIGE
MARAVEAFKAASQRAAREEAEAKIAQQQIEAEHRRTDMHKLADGFEVAVG
KVIETVFLASSSLESSAGSLTHTAETSRQLTIATASVSSEVSACVGTVAA
SAEQLLASVDDIGRRIEESTTMTDAAVQQTRQTSEHVLQLAHAGDRIGDI
VGMIQTIARQTNLLALNATIEAARAGDAGRGFAVVAFEVKALAEQTAKAT
HDIQRQVADIQQATRSSASSIDEIVGLIERVSETIATISAAIEKQGLETR
TMSDHVAKAASETVHVGTSIERVQRGAEHVESASRDVFAAAQSLANDSNV
LRREVANFLGSVRSA
>RPA3185 methyl-accepting chemotaxis receptor/sensory transducer
MKFDRIGNKLGAAGLLGVVLAGGMLANQFVAERKIEAANVLADGQQYINE
HTLEANIALRRMQLAFRDIRLAKAPADLDKPAASLAEMIARMSKEIDSAA
QRTVKQENKDRLLQIAALNKDYEKQGAELIKATRQIFEITGKRNALSGEW
RSALDAIRTSPATAANRLATEAILYEADSHFNAIRAATWRFSATGEDSQK
KAIDTRTNELNDTLSRLRSVVTDKSLSDEIDQLATAGKTFNDLTAVALKS
EAGKLENAAAALGIANRSAELMRAAVNESSKNYRAAKDDADAVLVQANRV
SFAVAIVVMLALIGSVIFTFVGVARPLTRLNGALSRIAEGELNTEIPGAT
RGDEVGDIAKTVVVISKNAEQKAREEAEAQARQEQIAAQRRKQEMIQLAD
GFESAVGEIVDTVSSASTELEASATTLTSTAERAQELTTMVAAASEEAST
NVQSVASATEELSSSVNEISRQVQDSARIANDAVSQARLTNDRVSELSKA
AARIGDVVELINTIAGQTNLLALNATIEAARAGEAGRGFAVVASEVKALA
EQTAKATGDISQQISSIQGATSESVNAIRDISATIEKLSEISSTIASAVE
EQGAATLEISRNVQQAAQGTHQVSSNITDVQRGASETGSASSQVLSAAQS
LSADSNRLKTEVTKFLNTVRAA
>RPA3570 two-component transcriptional regulator, winged helix family
MSTAPPSILVVEDDRETRALIAKYLRANNCNVATAADGREMERWIADHRV
DLVVLDVMLPGEDGLSLCRKIRANSALPIIMLTARGDDVDRILGLEMGAD
DYLPKPFNPRELLARIRSVLRRQASAVTASATPGATTLGFLGWRMDCRRR
ELRNPDGALVAMTSAEFDLLQALCERAGRVLSREALLDLTHGRNVGAFER
SIDVLISRIRRKIEPDPREATLIKTVRAGGYVFTPEVETA
>RPA4684 methyl-accepting chemotaxis receptor/sensory transducer
MRLSITRAVLLFGLIIGSGLTAIFGASLYGLSQLKVGGPLYEQIKLGNDL
VADILPPPAYVIEAYLEATLALEDPGSLALHRERLGRLKKEYQERHAFWS
KAPLEPAIKARLIDDSDREVQKFWRIVDASLLPAIEAKDPDTSMQAYKDL
TAAYTAHRAIIDDIVKRTNDLNAATEAATAVRVTDLNYLLWGVSGTVFLL
FVAGLTAIVKGVIVPITGMTEVMRRLASGDRAVAIPAIERGDEVGAMARA
VQVFKDNALRVEAMESEQGIKARADADRRTEMHKMADDLDRAIGRIVQTV
TSTSTEMEAAARQLEGAAETTQRLVTTVAAASQQSTATAQSASASCNEVA
SSASQIGQQVRQSQNISQAAVRQAQETNARIAELSKAAGRIGDVVDLINA
VASQTNLLALNATIEAARAGEAGRGFAVVAAEVKALAAQTARATDEITEQ
ISQMKAATESSVSAIEAIGNTILQISEISDSTASAVDHQGAAMREIASTV
RQSADAATEVSGTIGAVRDGAQNTGAASTHVHDLAAALLAESRHLKTEVD
RFSAAVRAA
>RPA1322 putative signal transduction histidine kinase
MIGEASIHGGTSVLIDSPIGLYMNAECNHRIANSLQMVASLISMESLQLQ
DDQARRSLEMAGLRIQAIAGVHRRLYSTSLGEDSLDLADYLISLIRELRP
LCLPSLNSGRLLADLIPMTVPPETATSLGLIAAEAVVNACKYAYSDGRCG
DVIIQIRRNGLGGGAMSIADTGCGRSVDDGATKSGFGSRVIDLAADRIGA
TIRYEDNRPGTRLIVDFPVKPSMQCPIISLPE
>RPA3076 putative diguanylate cyclase (GGDEF)
MRLISERYFLSRNAGFLRAIGPSSPAVTWLISGPQPQPASIVRKLLLHTQ
TRKRTLVLAIFSTTLMAAVVAATTDAIWAIVWLAVELGFGAARYAALAAL
QRDEAAGRPGNAVLPLYLGMSWAICYGIGCGLCAISGEWLLILMAGIFIS
GLAGGISSRNSGTPRYGITLIYLLGTPYSVAMVLSPLPYMYIVGLLVPIW
GFGMALVLLENYEVLLNLFLSERKNRRLANYDSLTGLPNRVMKRQRFERL
LRGADASAPAPLTVFCLDLDGFKSANDRFGHAAGDAVLVSVAERLRSSVR
EQDQVFRVGGDEFVVLLPGTRTDDAAPVAQRIIAAIAEPFELAGHGRLDI
GVSIGAATFPTDGSTVDDLLRAADIAMYEAKRQGKGRFVAAGRNGMAPQQ
PAPATANVTPASRVRPPEPAGLWSKLQLPSLAKAAEIRITAHPQIPAGS
>RPA0635 sensor histidine kinase
MQAADKQPETHAWRRGLEPKIGLSGKLLLLTIPLILIAEILIYVPSIANY
RLNRLNDRLAAANTAALVLDASPSGRVPDSLAQQILDSIEARAVAIKMGQ
QRRLLASSNLPTKIDHVVDMRNVTPWGAILDSFVVMLESGNPAIRVVGPA
EGNAEFIEVVIDAAPLRNAMYRFSSNLLLVSLTITSLTTGLIYLALHFLF
VRPMRRLTANMVNFRRDPESPASIVVPGPRGDEIGLAERELSDMQRDLVS
MLHQKSRLAALGLAVSKINHDLRNLLASSQLLSDQLSSVPDPRVQRFAPK
LVRSLERAIAFCQSTLSYGRAQEAAPDRRSILIEPLVNDVRETAGLADEA
SITWVSAIERGLTIDADPDQLFRVLLNLVRNAAQALEGQPRNDANLQQIR
ITGRREGSVTVLEVSDTGPGVPQKARDHLFEAFHGSVRAGGSGLGLAIAA
ELVRAHGGEINLVEGTIGATFRISIPDRPVDLHSLRSERARA
>RPA1090 transcriptional regulatorn, Crp/Fnr family
MAMLPAVDWLRGFPVLGELPEMERSALAGAAMAMSLPAGASVFAPDQPCG
MFILVCRGTVRVFQLDPAGNEIVLYRLGPGSICILTTLALLASDSYSAFA
VTESPVEAVGLPAATFHDLIGRSAQFRSFVFNAQAARMADLMAVIQNVAF
ASIETRLASRLLALAADGREVSITHAQLAAEIGSAREVVSRHLKTFERRG
WVSLGRGRVELRNAAPLRAAAQAAR
>RPA1671 putative serine/threonine protein kinase
MDEVTFEPGSTIDGFIIEEAIHRGGMATLFKVRRDDDPTPMVMKIPRIGE
GEDPAAIVSFEMEQMLMPRLSGPHVPKFVAMQDFSTQPYIVMERIAGEPL
LARLPELPLGYDEAVAIAAKIATAIADLHRQHVIHHDIKPSNIMFRPSGE
AVLLDMGLACSDQLPDLMQEEFRLPFGTAPYMAPERLLGVRDEPRSDLFA
LGVLLYFFTTGVRPFGETETMYGMRRRLWRDPHPPRKLRPDYPLWLQEIV
LRCLEIEPAWRYPTAAQLVFDLTHPSEVKLTTRSEKLKHDPLRTVLRRRF
NKELTRPRAVESMAAHLASAPIVAVAIDVAEGSGALNDALRTTASRILAT
LPSARLACLNVLKLGRMTIDRTLDEHGHNKHVDRLVQLRHWAEPLKLEDD
RLTVHVLEAVDPASAILEFAQASRVDHILIGARRSSVLRSLLGSVSAKVA
GEASCTVTIVREPQLASPRSGPRAGAQDA
>RPA0907 response regulator receiver (CheY-like protein)
MHKILLAEDDNDMRRFLVKALENAGFQVSSFDNGMSAYQRLREEPFEMLL
TDIVMPEMDGIELARRASELDPDIKIMFITGFAAVALNSDSDAPKNAKVL
AKPVHLRELVSEVNKMLAA
>RPA4000 Adenylate/Guanylate cyclase
MRCSACGLSAPTEASFCPRCGAKLSLHCQSCGFRSPLGSHFCGGCGASLV
EASGTTVTGVSGGIAPDRDQRPERRQVTILFVDMIGSTEMSVRLDEEEFK
DIIYRYRDICANAVRQFDGCIVRYIGDGILVCFGFPFAHEDDPIRAARAG
LALLDNLQRLNSEQETKAIQVRMGMHTGIVIAGDLRSSDTFEAMGILGET
PNIASRVQNLAAPDRLVITLETAQLLGERFDLIDLGLQQARGVDGPLHLF
EVAGERTEATRERPPASHKMIGRQQELALLQDRFFRAQDGEGQVVQIIAE
AGAGKTRLVREFKARLDPAAFLPMTCYCSAYSRSSAFYPIIEMIRRVVKP
DGDADAEAMSANLQRSFVGLETITPEATALVAELLELPVSPAIKDIPPAR
RRELLLEVLTQWVLKQSEDVPVILVVEDLHWADASTTTLLRHIVERLSNW
RVMTIFTFRPELTAEWLLGSQVTRLGLRRLSKNEARALTAQIAEASTMTA
DIIASIVAKTGGIPLFIEELTKAVLAGASSADHDPARLTALVDSIPSTLR
GSLAARLDRLQIAKPLAQVAATLGRTFDSKVLAAVTGESQPALRAQLDEL
LRQGFIHQHGTQVQAKYSFKHALIQEAAYDSLLKSERRSMHRRIAEVIST
QFADVVAATPEVLAEHYAAAELAESAIAHWEAAGNKAAERSANVEAASHF
ANALAVLRRMPDTTERARRELSLELQRGSQLLAIKGNAAPQVEEVFTRAY
QLSWRLGEHRLLFRALYGLMMFFIVRGQLEKAHQCGVRLIEQAERAGDDG
LQLQAKRPLGLTQFYLGQFSSAKETLKQALQLYDPDRHHHHRFEYGSDPA
VLAQCNLAWTEWFVGLPDTAIADSAQAMARAIQLNHPHSLGFALSFEASI
RQSRGEPKEALQAAEQAIQIGQSYRFPYWSAWGRILRGWAIGRLDSPASG
AAEIKAGLEDYRATGAELIRPYGLMLLAETLGTDGALEDALALLNEALDI
TETNRTLFCGPELYRLRGSLLLAADSHDDAGGENLRKAVDLAHELGSPML
ELRALASLVSASPPRGSSAPLQRLERLRDAMTEGFATADLAEVARVIELA
ATHRR
>RPA3281 probable FecR, iron siderophore sensor protein
MDRLDGPSSIDEQAVQWFVVLRDDEATEEDRSAFAKWLGADPAHEVAWRS
VERMWSGLDAVGRHPAPRSPRRQRSNLPKRIAATAVLLLVTAGFGWQLLP
VGLFADHRTGVGERKTVMLQDGSQVELATSTAIDVSFGDTERRIKLLTGE
AFFTVAKDPGRPFIVTAEGGEVRVLGTAFDVKIAKDVSVAVAHNTVQVGT
PAATPVKVEAGHEVRYGTGGVSGVTAADLDAVQAWRHNQLIFRDVPLDDV
LADLGRYRRGPIVLFGGALGKRHVTAVFDTDDVDAALDTIAQSLSLRIYR
AAGLLTVMIPSPEPQKDAVVE
>RPA4691 methyl-accepting chemotaxis receptor/sensory transducer
MSLRLGLTSKINSIALVGIIGVLAFGALYLIGTSSQDAARLIDDRARALG
DSNAKLQIAMLEQRRAEKNFMLRKDEQYLGMFQQSGRVATEMLADMIRQT
EATGQTDLTRSLKSAQDGFENYQSQFGRFADATVKLGLKEDLGLEGSLRA
SVHGVEKSISSFDAPALMVQMLMMRRHEKDFMLRRHPKYGEAMKKQSAEF
AKLLAASDLPQTAKTEITQKLDAYQRDFSAWMENALALDRAEKDMVTTYR
ALQPALDELSSTVRQQAELAKTMAATARQATEQRMQIAIIAIILTVMVLG
ISIARSITKPLSGLNAGIRRLGDGELDLVLPGLQRTDEIGDMARAVESCK
LKAEERAAAEAAAKADQDRLAAQQRKGEMIALAAKFEDAVGEIVETVSSA
STELEASATTLTSTADHAQQFTTLVAAASEEASTNVQSVASASEEMASSV
NEISRQVQESARIASEAVTQAQVTNERVSHLSEAASRIGDVVELINTIAA
QTNLLALNATIEAARAGEAGRGFAVVAAEVKQLAEQTAKATDQISQQVGG
IQSATDQSVSAIRQIGETIARMSEIAATIASAVEEQGAATQEISRNVHHA
AEGAHQVSVNIVEVQRGASATGSASAQVLSAAQSLAHDSTRLKDEVVRFL
RTVRAA
>RPA1121 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
MQLASQKRNSEQTSPAIRAGLVDSLFMNPAPMIVGAFGPAIAGAVIGLVT
GSILNWLCVPLFVLIGFARAVQMRRYQQRNAPLTVEEADVWERRYRLGAI
AHGISLGAWSLVVLLGTDDSAAHMLCVATVVAYTSAGVGRTFGRPQIFHL
QVLLSCGPLIFAMVRVGGVYYLTLALLSAVFFISIRHLTSSLQRIYLNAW
IGREREAALANQFDTALNNMPHGLCMFRADGRLAVMNHRFAEMMRLRDEL
VKGSPTATEIVSACVAIGAISAASGRLILSEIESALAGEIVTVGDETIPR
SLCWTFQPMADGGAVVLIEDITERRNAEARIVHLARYDELTALPNRVSFR
DEIERILEAEHGRGKTRLSALLFIDLDQFKQINDTLGHPCGDRLLCSVAE
RLRDMLRPDDYVARFGGDEFVVFQQNIASNEDAAALARRIVDRLSDRYLI
DHHVVEIGASIGIAMTSPGTKADILLKNADMALYRAKADGRGNYCFFREE
MAQTVEARRILELDLRKALANEEFELYYQPLVNLKSGKITTCEALLRWNH
PVRGTVSPVDIIPVAEDMGLIVDLGRWILRKACMECMLWPEPVSVAINFS
PQQFHQRDVLTEVRYALEVSGLPASRLEIEITESSLLRNTQWTHDALQQL
HAEGVRISLDDFGTGYSSLSYLHSFPLQKVKIDRSFLEGIDSDRPLTLLR
GVARLSSDLGMSVVVEGIETNEQLELISADGTVTEAQGYLFSRPVPAQRI
RQLLNASQGVRQKDGKVLSLPTRSIA
>RPA1340 probable FecR, iron siderophore sensor protein
MTQFDDPPEPLKALDREALERVRRLGSGQAGEAEIEATKQWGRQSSDHAE
ALWQASLLWDRLGPAGENLLRRSGAALGRIEAAPRAVNRRAVLAGAAATA
TVAYLAVRPPLDLWPSINDVMADYRTATGETREISIAGDIQLSLNTATSI
KLQKPADLTDRIELLRGEAVVTVGSQPGRELIVVAGDGEARARRAQFDVL
HERDTTCVTCLQGEVEVRRGNAASVLRVGQQIRYGTNGLGAAITTDIAEA
SAWREGLLIFHQRPLAEVVTEINRYRPGRVMLVNAQLGRRVVNGRFRVDN
IDGIMAMFEQIFGAKLTRLPGGIVLLG
>RPA0501 BolA-like protein
MGTQDTITQKLREAFTPESLAVIDESNLHEGHAGHSGRSETHFRVNIVSA
AFAGKSRVDRHRMVNDLLAPELKGGVHALAIKAKAPGEA
>RPA3996 probable transcriptional regulator, Crp/Fnr family
MMTSMTTNLGRRLTKTSDVVRAQRLFQDLAPEALDQLCRAARLVRFSRGE
TVFLKGDDANALFVVVEGAIRVSSGSTDGRTAMLNLIGSGEVFGEVAVLD
GLPRTTDAIAHSDSVLLSIARRDLFELIDTQPQLMMKLIVLLCGRVRATS
QQVEWLLLQSMSARLAGTIMRLAERDTDRAPLRLQLTQQRVSEMAGMSRE
SVNKLLARWASQGWIRLGPQTLEIIQPDALRAVAGEG
>RPA0583 sensor histidine kinase with PAS/PAC and Response regulator receiver domains
MRLSVRLTLAMTALVACTVAAIGVLAYYNIGRAVVPSGLTRLAYQAKARL
GAYESVLRIIRNEVLSARLLPAHLGIARAQRGSGFDPEVGLSDEQWRKHL
AAAYAGNMRVKPGILAYRLIGVADDGRTLIAVDRHGPNGSVRTVPDAELT
RLGGDEAFRRALELTGDEVFFSPIRIFSDANNAGTVPSSPRFTVAAPVRD
EEGTVFAVLMVTLDLRPIFERIRDVLDNDTDVYFVEADGSYMMTYIDGRI
LPAEPERRWQDDFPQLAATLGDKPGTAAVFSRPDGERVAAAIVMATLSSG
VRTAVIETEPLERIMAPATALRTSGLIVGLAAILGAVLLSALLSRSLAKP
IAQLTRAVIAFSRTGRLVVPVGLHGESRILADAFDETVAKIDAANAALRG
KSELLDKTIASMADAVAVLDADGKRVFANPTCVTLFGVAEDIGSERWKLK
YKRFLADGVTPMPDYDSPAARARRGESFDNVELGIRHGDDPVVQLAASAR
RIENPDGSFAGAVIVYRNLTAFKESERQLRQAQKMQAIGQLTGGVAHDLN
NILTVITGGIEILADGVSDRPGLKDVAAMVDQAVTRASDLTHGLLSFSRK
QPLQPRSIDVNALMLDTVKLLRPTLGAGIEIDVEPAPDLRPALADPSQLG
SALINLAINARDAMKGNGKLLLETGNVDLDQAYAAQHDEVSAGRYVMLAV
SDTGCGIPASIRDRMFEPFFTTKAVGEGTGLGLSMVYGFVKQSGGHIELY
SEEGHGTTIRLYLPYAAANLDVGPDSAAPPLAQGGRESILVVEDDALVRS
YVMTHLKALGYTAHSAASAAEAMSMVYDDVEFDLLFTDVMLSGGMNGPQL
ADELRKYKPNLKVLFTSGYTENAMLHHGRLDPAVMLLPKPYRRADLARML
RRVLDAEADVPAK
>RPA3751 unknown protein
MSHKMIAVAAAAALAFAAAPALAGASKDDAVAMVKKAVEAIKADGADKTY
VVISDKTGPFVKDDLYVVVYQLDGKVLAHGANAKFIGKDMIDAQDVDGKL
YVKERVEMAAKQPSFWQDYKFVNPVSKKVEPKEMYCERLDNTAVCAGVYK
L
>RPA1481 response regulator receiver (CheY-like protein)
MSRGPVVLVVEDEPLLRMNAVDMIEAAGFHVLEAGSADDAIEVLEKRDDI
CLVFTDIQIPGSMDGLKLARAVRGRWPPIKIITTSGRVQVAADDLPDGGR
FVPKPYTQAQITGLLREMLV
>RPA3622 hypothetical protein
MPFYRFHVRDPINRVDGPGHDGAALADDIDATLFAAGVIQRLVQVHPEVP
RTWSIEIMQDQRRVGLLPFDKGCQVMLRPEWVCDQPIDVHEGWR
>RPA3994 putative diguanylate cyclase (GGDEF)
MYINHAAEMLLCNSSVVVRCRATRGVSESLARPGGVTMHKRLTEETHHSA
GSPEQPEIAGLHRELAEARQALETLYAALDNVDAGLLILNEELRAVYSNP
VLHVMFRANSAEEIRQNRPLYAEMLAASAQAVAVNLEDYVSRRLAWVQSG
DPKPMDLAMTDGTALRCHLAVLPGGGRMLIYSDVTDIVRNAEELERLATT
DGMTGVYNRRHFLTLADREWSRARRYERPMSFLMIDIDYFKAINDGFGHQ
VGDEMIVHLARLARDCKRDCDVLARLGGEEFALLLPETDLAQAEVVAERL
RREVAGNALVVASHAIPATVSIGVATALPGMKDVSDLMKAADQALYDAKH
AGRNRVICRACHDPAPTLVPALTPRCEAATMR
>RPA3546 methyl-accepting chemotaxis receptor/sensory transducer
MLKSISARMIVAITLVAIGSCVVLAGFSVWRQKATIDVALERELRADFAN
ITAATEAETRTTLALSDVLAALPPLRELTKASDRDGLMKLLKEGRDLTTL
RGLSLYTIQVPPATTLMRIHNPKTFGDDVSGRRAMVVQAMTTGKAVGGIE
PGLDNLTVFGTTPMVEDGKVIGTVDIGAPFGKAFVERMKARFGVDVAILQ
INGDKTNVIASSLPNPVTDLATLRRAFGGELMIEKGEADGKAIATTFGPL
KRFSGEPVAVLMIARDASAYAALERQSMQWLAFAAIVAVLAAAAIAIWLG
RSMAKPIQALGNAMRDISSGRHDVEVPGRGRSDEIGLMAQAVEVFKEGLI
ETGRLRAAQDEQRITHETERRKAMHELAARFETGVGSVVELVGSAATELR
GTADSMVGTARESERRLVAATAASQQATSNAQAVAAAVEELDASITEIGN
RVDQSARVAGEAATQAGRTNEEVRSLAEAAQKIGEVVTLISDIASQTNLL
ALNATIEAARAGDAGRGFAVVAAEVKALAEQTSKATEEITTQINSIQQAT
QSSVQAIEGITGTVAQINEIATAIASAVREQSAATREIAHNVAESARSTT
EVSSNISGVNEAARETGVAAGQVVESASELSRSGEALKTQVDTFLREVRA
A
>RPA3133 response regulator receiver (CheY-like protein)
MAKTVLIVEDNELNMKLFRDLLEAHGYQTAGTSNGYEALDLVRKLRPDLI
LMDIQLPQVSGLEVTRWIKDDAELRHIPVVAVTAFAMKGDEERIREGGCE
AYLSKPISVGKFIETVRRFIG
>RPA2291 putative Adenylate/Guanylate cyclase
MRLLSRGAHPLLGRAVRGWVRLRRLFRGKYMRAVLAALATLIALTALRTY
EPRIVTETKERAFDAYQRLAPRPPGNDLPVRIVDIDDASLAAFGQWPWPR
TRLAALTKRLGELGAGVIAYDIIFSEPDRTTPERLIADIAAADLPDRDRA
VALLKSLPDHDTSFAEAMQQTPTVLGFAASLRPNETRPTVKTGLAFVGVA
PANVLPPFRGAVSNLPQLDAAAAGVGAINLSASDRGGVVRRLPMLLSDGA
RVYPSLAVEALRVAQGQKGVIIRGTGASGDDDVGDAALVDMRIGQFKLPL
TQDGEAWLYFNRDRPDRYVSAKDVLDPAQTEQMRDRLEGTIVLIGTSASG
LGDARATPIGQVMPGVAIQAQMIEQIVSQEFLERPDWANGFEIVMTLLLG
SLVAALVLIAGARFSLVACALVFVGAIGGSWIAFSHFRLLIDPVYPSLAT
LLTYIAVERVLHTASDREKKFVRQAFGQYLAPDLLAQLERTPDGLRLGGE
QRELSVMFMDVRGFTPISEALSATELVDFINTLLSPLSDAIQDELGTIDK
YIGDSIMAFWNAPVDVPDHAARACRAALKMRSIVEQLNDSDAFGFAARGF
ADPVVRIGIGLNTGTACVGNMGSSRRFNYSAMGDVVNVAARIESASKEFG
TDLLVSEEVARAAPKLALLEAGEIKLKGKSQPARLYALAGDEAFASSETF
AELQRLHRGLLDALAAGDGVRAHAILAMCRTLAPPALAGLYNHFARRVAT
LADAPRPVLDHTGG
>RPA3419 possible transcriptional regulator, Crp/Fnr family
MAGSQSANDLLAALPAADFELLRPHLRTIDLKFGQVLVEAGAPLEQAIFP
HGGIISSVIGLGKDEAIELAAIGRDGAVGAEAAHETIAAVGAVVRYPTTA
SAIEVMHFRYAVDHSATLRSLLLRYQWIRAVRAERVAACNAAHSAEARLC
RRLLQSRDMAGSDCMQLGQDLMAQMLGVKRNTISLIAHALQQQGLIRYSR
GRLAITDVDGLMLRACACYKTDRGGFAATAVERQPVVAIPRLASDYAESP
RLPS
>RPA0139 methyl-accepting chemotaxis receptor/sensory transducer
MRLTVKAKLAGAFGVVILLSAITGGIAYVKLTQLAETSEGLVSRSQRIDK
AGELQNNILYQTRAQRDIIIASTDAELQKVADEVKQYRKDALRIRDEIAA
VATEAGKRMIEKFSTAYDKMNATEDQIIKFGTLNSNNRGAQLWTSEGAPV
VKDWSEAVESSLAEARKLPVSAERANALISILSIRADGEAVQKDLALSFY
ASNLEDLSSTIKALGDATERLRSSSQQSVAALSAVGLSSSAITSQSERFA
KIAGRVSDIVKEGGNIRAAALAGTEGRATSMVAIQAATDYVNYVKKAMAE
MSEQAASDAANAKLLLISIVIASLLAAVASALWIAINISRGLAQAVELAN
AVAIGDLSHKINSTSDDEVGDLVKSLNAMTANLNATAGVADEIARGNLTI
EAKRLSEKDTLGIALEQMVEKLRQIVSEALTAAQNVSAGSQELSASAEQL
SQGATEQASSAEEASSSMEEMAANIKQNAENASQTEKIAAQSAKDAEASG
AAVGRAVEAMQTIAEKITIVQEIARQTDLLALNAAVEAARAGEHGKGFAV
VASEVRKLAERSQASATEIGELSGETVKVAQEAGEMLAKLVPDIKKTSEL
VQEISSACREQDVGSSQINQAIQQLDKVGQQNASASEQVSSTSEELASQA
EQLQSTIAFFRIDQDKAKAHGAPIDKAVNQLRAKAAHMASVDRGTKKPQA
AKPQRQLKAAGGGGGFAFALGDGEDDRDADFQR
>RPA0980 sensor histidine kinase with a PAS domain
MRSDRGGRESLIDRVGSQLPSPFAGDQEAAWIEVIRKMDEVYADLLRYET
DLEDKNAALEEAQAFISSVIESVSDILIVCDRHGSILQVNPAAVRLLGDS
AGTLLHRSLTDLVDPADRARIDALLQAQCPSEISNLEIRFVTERGLSDLY
AINGATRCDPAGHRLGAVLTGRPIGELRRAYEALHAAHSELQHAQRQLVE
QEKMASLGRLVAGVAHELNNPISFIYGNIHTLDRYRDRMSAYLGAIHRGA
EPAEIERLRRDLKIDALLADYGSLIEGTLEGAMRVADVVKNLRRLSFPKS
GESLRVDVDRVVRTAVRWAARAKPHHVDFAFEIAPELAILGNEGQFHQII
VNLVDNALDAVRGQSAPRIEIAARRGGDQIVITVSDNGAGLPDGLIDKIF
EPFFTTKPVGEGTGLGLWISYGIAREHGGTLAAANRNGGGAVFTLALPAA
>RPA2075 putative signal transduction histidine kinase with GAF and PAS/PAC domains
MDHYLRWRKRQKLLADFGEFALSNDNLADILTEACRLVGNALGTQRANVL
EIEPSKRSLFVRAGVGLDDGIVGKLRLPMREIASERFSPDGSPLDIIHDV
HTEPQYDLAAFMEVAGVVALVNVPILLPGRTLYGLLQVESSEPREFSQDD
VEFLRTYSTILGPVIDRLNKVRALRDAEERFRLIVEAARDYAIFTTDAND
RIVDWLPGAEAVFGWTAAEAKGRSANMLFTAEDRASGADVKEIETARRDG
SAPNIRWHAHKGGSRVFIEGSVTSVRGSDGQAHGFLKIGQDVTERRRNEE
RIRQSEARQRALIEGIPQLVWQASSDGGWIWSSPQWSDFTGLAPMRSLAF
GWQDAVHPDDRRTASTAWSRANETGSFETEYRIRHGLTETYRWFAIRAAP
VRDSDGAILTWLGTSTDIDDLRRMQQRQEVMVTELQHRTRNLIAVVQSIA
EQTMASCGTMEEFRPQFNDRLTALARVQGLLSRSAQEPITIATLVRAALD
ALGTVDRNRVTISGPNVPLRNSSVQTLALALHELATNARKHGALSILVGR
LEVAWEVRKAPDGRHLELAWIEHGRSSEQPDTPGAQNGGYGRKLIERALP
YALSATTTFELRDVGVRCTISLPLDTTEAEQAS
>RPA3054 possible transcriptional regulator, Crp/Fnr family
MANDLQASSPAVRNRILAQLAPDDFEALKPLLRPVEFRGRAVLQEANRRV
ECVHFIEDGLVSHLSGTRTDFVETAMVGYFGYVGVPLVLGADVASQRSVV
CMPGTALRVEAEDLARVMADRPQIREEMLRYVPALIAQNTQSVLCAAKHE
INQRLARWLLLANDRIQSDVLYITHELLASSMGVRRASITNALLQLEAEG
VVEKRRGAVRIVDRQALESRTCDCYHIVREAYDRTRTVECCGHDGADHSH
GLVAGTA
>RPA4112 putative diguanylate cyclase (GGDEF)
MLSNRPDTLDRSLWPVRTRVTLAEQFGASGGPPMLASEITTAAWTTFDGR
RGYVLRGAIPQSDWSMLIVSPLAGMFASRFLGIVITLQLALSTLFHFLGK
QHGVRESLQMQRRADLQVLADNLEVKATTDPLTGLFNRAKFDLVLRHELI
RAERYGTQLALIVYDIDHFKEVNDAHGHQAGDRVLVQLSEIVSCEIRQTD
LLVRWGGEEFVVVLPATDGMTACLVADKLGRAIAQATFDLVGTITCSFGV
SDFVIGDSVDTLLARTDNALYRAKMNGRNRVEFAPASPNLAPTLELR
>RPA4289 putative dual use protein Tyr:Ser/Thr phosphatase
MAPLRTSQTHPLQIAEVRAGPDHGRIGITFCPGKHDHSALTGGWARDLAA
DLDAIQAWGARLVITLVEPRELELLKVPELGLEVERRAMQWLHLPIPDYH
PPTAEFERRWATEGRLIRQRLRAGDDVLVHCKGGLGRAGMIAARLLVELG
VPPTTAIAQVRAARGRGAIETSAQQAVVERAQPIP
>RPA4311 methyl-accepting chemotaxis sensory transducer
MMSLSSLSKAMLAVAVAAVVMLGLAVARILIGPLGSVVEIAGLLLGLGSI
GVAAWLLRGAAGAVGEIAAVAESAAHGDLEARVQGRRDGGDIGKAQAGVN
NMLDIVDAFVREASASMDYVSQGKTFRKVLTRGLPGSFKVASTTINNATG
VMDRRVRDVAKEAQCFAAGMDNVASMLVTASTGLKGDAGAMANAAEETSR
QSVSVASGAEQASANVQTVASAAEELTASIAEISRQIQHSTASTHQAVDE
AAQTTAKIQQLADAAQRIGDVVKLINAVAAQTNLLALNATIEAARAGESG
RGFAVVAAEVKALASQTAKATEEITARIGEMQSITEQSVGAVEAISRRIS
EINEVSTTIASAVEEQGAATREIASNVQQASAGTALVSSNVVGISHAADD
AGKIAVRVNGVSGEIAGQVDRLRSEVQRFISQVA
>RPA3410 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains
MSAAVTQVSENSTNQLAADLTVLQRKWYAAIQPGQSLPSYEEVMLGSLGR
LADHLVLLEIDGETPEVSRTGRYAQQWLCDERWDIPLDALSPDCGTALAQ
AASGALQNKRPHLGTAHCVRDGIVQRYTLLALPTASRWGGTLVGVYVNEE
AQRYNLLDAIFSSTDDGIVALTAIRGPDRRPFDFQIVHVNHGASQLLRHP
VSELRWSRLSAGHHLLCSADVAGRLIELVDSDASVTFAVDSGDRNLSVSA
TAFGDVVSVTISDVTSLKKREESFRLLFDGNPMPMWVFDAQSFEFLSVND
AAVAHYGYPRERFLRMSLREIWPREEWIAHGQTLLEMRDSYQSEGNWRHI
KADGSEIHVLTFGRRVLFDGRDGFLVAVVDITERRKAEAKIAHMAHHDGL
TNLPNRALYQQRLEQALAQARGSGTMVAVMCVDLDLFKNVNDSFGHPMGD
RLLQCVAERLRQQIGDGDLVARLGGDEFAIVLTSLATPNEASSFAARLIE
ILSAPYDMDGLEVVIGASIGIALAPSDGDECEALSRNADMALYRAKAAGG
GCHHFFEKEMDRQAQIRRDMELDLRQAFARGEFELHYQPLIDLAEDRIGG
FETLLRWRHPERGMISPSDFIPVAEDIGLIVGLGEWVLRQACLEAASWPS
DVKVAVNLSPVQFRSRNLVQVVISALAQSSLVPHRLELEITESLFLADSE
ANLATLHQLRSLGVRISMDDFGTGYSSLSYLRSFPFDKIKIDRSFVKDLT
QRPDCLAIVRAIAGLGRSLDITTLAEGVESVEQLDVLRAEGCHEVQGFLF
SAARPASEICGLLMRFGRQASQAA
>RPA4663 methyl-accepting chemotaxis receptor/sensory transducer
MSVTTAAGARDKSAALPALRFRGKVTLGFAVVLGITAISMGLAYLGFERV
SDGVVAYRDGVRQSDLARNIDREMVGYEARARYYVLTGKDEDAKAALAAE
ARLKDAIAESLQGATRPAQREALTRLSGEFATFAKLFADIVALKTDSALV
VQNGLTRGGLNLRYKFDDLVSAASDREDSSAELGAKRAAEQYAGAMTLAN
TFAINSSVPVADNALARLKFVENSLNIVKADGEIAAAVNEIFTMLGEYRQ
ALVKLSDNVKAIDAKVATMMGSAAAIIRDSEAIKADLLADQQRLERESDA
TVTSTERMVALLGIGGFLLGAVLAVLLGRGISRPMQSMCAAMRRLAGGDF
DVVLPGLGRRDEIGEMAAAVEEFKVQAARKAEQDAIAREREAEAGREARR
AELIGFACEFESAVGAIVAHVSDAASQLESAASTLTRTAETTQALSGQVA
GDSQQASSGMQAVASATEQLSASVGEIGRRVDQSSAIAEAAVEQAHETDD
RIGKLTQAAQQIGEVMQLITTIAEQTNLLALNATIEAARAGEAGRGFAVV
AAEVKSLATQTAKATDEISSQVAEMQEATRDSVTSIQRIGSTIAEISTIS
ASIASAVTQQDAATREIASSVQGVAQGTQRVAGNIAEVNRGAAETGAASA
QVLQSARSLSAESARLRTELDRFMANIRAA
>RPA4524 sensor histidine kinase
MILAASRGSLYAVGGRRFRCASLMSSSERSDSRAASLPVATVAAPRRQWL
HHLLKAAGLRFDDPAEERRFVDSYVRSQIGWTQAAMVLGALTYAGYTFWD
WMLYPEVVPITLAIRGGTALLVLLPLTLLLGMARRWAETILLLYCVIPGC
VLPSVYLVLPSGFTYASAGMIIVILFVSTMLPLRIGSLLIFCVTTWLAFA
FAERLAPEMSPGLGFINHFLIGNSYLLSLYAVGAREHRARRQFATTEALQ
RETARSEASLRELRATQAHLVQAEKLAALGQLVAGVGHEVSTPIGLALTT
SSAMQADVRDLARALEGGAVRRSDLTRGIGRLDQGLGMTQQNLLRASEMI
HAFKQVAVDQANEQREGFELRGWLSTSFDKLRPLLSRRGLTVELNVPEGI
TLISRPGALGQVLGILAFNAAIHAYPGDAKGVLHVEAARIAPDRVRITLA
DDGVGIPDDLAERIFDPFFTTKRDGGSIGLGLHIAFNLVASTLGGTIVLI
GREQGAAFQIDLPTMSPS
>RPA4513 putative signal transduction histidine kinase
MNMEDLYRLLRTSHVQAQGIVDTVVDPMLVLDASLTVQNASRSFFETFKV
DRYETIGQPLFELGNGQWDIPDLRRLLLEVIPKAAAVINYQVDHVFPGLG
PRTMLLTARTLVHPDNASHSMLLSIVDATDRFRRDAARDLLLGEMRHRMK
NLFGVVQSLARQTTTEGRTAEQYRDDFLGRFGALMEAEDLAFVTQDETAL
LKLLQRILAPYKGGPAAIAIESGPAVVLAPRSLGSLSLILHELATNAAKY
GALSVAGGRLRATWAVDASGRELRLTWVESGGPAVAPPTSTGYGTELIRS
VTSYSLGGRSELDYAVGGLRAEIIIPLRSEALPS
>RPA0529 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
MSSAAPAPRSSTAQTVTAPDSLLLSLLGQAAFVWDLASDTLSWTGRAAEL
FQDIPAETLATGASFAALLEPSRHVRSDALLNGAATAGPGCVPYRIEYGI
RASTAAPVSWIEETGVWFAGPDGRPARVEGIVRINNERHARDEQLLKLSQ
HDPLTGELNRTHLIGALAEAIEEATRFRTSLSFMLVGLDHLARVNDSFGF
DVADEVISTIAGRIRNRLRAGDQLGRFSGNKFGLVLKNCTVDDAHIAAER
FLAAVRDEIVPTKSGPVSLTASIGAVSAPRHARTADEAINRAQEALAAAK
HRRSGSFAMWRPNVERDTQRRVNIRVTDEIVTALNERRIVLAYEPVVDAS
SRAPAFHECLVRMKTDDGQVLFAPDIVPVAERLGLIRLVDHRVLELVVAE
LAAAPGVTLSLNISPDTTIDADWWAGIESLMLAHPGIAERLIVEITETVA
IPDLDEVRGFVNRLKTLGAKIAIDDFGAGYTSFRNLRALGVDIVKIDGAF
VQNIARSADDRAFVQTLIDLARRLGIKTVAEWVQDDESAQLLRDWGCDYI
QGRLIGLASQQRPWPLAAEAAARLAGKAVN
>RPA1314 response regulator receiver (CheY-like protein)
MRRETILAQGHTICIVDDDDDVRESISSFFRSVGLQVVGFGTAEKCLSSA
TIDDAACLITDLHMPGMNGLGLHRELLRRGVHVPVIVMTAYSTPEAHAEA
RHLGAAGFVEKPVDPEILLQNVETILREASAHAREPDSPGTNS
>RPA1675 methyl-accepting chemotaxis receptor/sensory transducer with PAS domain
MRNNLPVTDDEYVLDDGTLIVSKTDVKGRLTYFNEQFVKASGFSEQELMG
QPHNIVRHPDMPPEAFQNLWDTLKAGRPWVGAVKNRRKNGSFYWVLASAT
PLWENGQVTGYMSVRTKLPADQRAEAEHVYALLRNNKAHGYKIDDGIIRR
RSWFGRLGMFTRTLRLRLTTMVAVQAVIMMIIGAAGIFAVHNMDQRLQSV
YEDRAVPLGQLTAINERLLDDAMALRGAVVRAKVGKQIRDVAGRIAANRE
RSDQLFADYTATRLTAGEKAVADAFSAARQAYFDEVVGPGVGMVAAREFD
RLGELMTGRAEDLFRAAKTELDKLVALQVQGARDEYSSGQREYVTMLAIS
ITLLLIGLFLGVLNGVFTTRAITVPLRRLNTVMSNIAQGKFDSRVVIERD
DEAGVALRNIQAMQNQLFFSREEEKDAAQRTALQRKLDMLQLANEFEAAV
GEIIETVSSASTELEASASSLTSTAERSRELTVTVAAASEQAASNVQSVA
SATEQMSSSVSEISRQVQESARIAVESVNQARHTNDRVSELSQAAGRIGA
VVELINNIAGQTNLLALNATIEAARAGEAGRGFAVVAQEVKILAEQTAKA
TGDISQQISGIQAGTEESVAAIRQIGITIDRMAEIASTVASAVEEQGAAT
QEIARNVQQAAHGTIQVSSNIASVRQGAAETGSASSQVLAAAQALSHDSN
RLKTEVSRFLSTVRAA
>RPA1327 Ser/Thr protein kinase
MATSQQTCHGEARCSSEEPRPYQAINRQWWSELALSFTGLADGIETHLAE
EKSGRTWRIRSAAAGTFAAARLEREATLAARVGAAAAELPAYVGNSDKVV
LVYPAARRALASLPIGEVAVDRFLAIAEAAAIALSRVHACDVVHGTLDAG
KVLLDENGLVRFAEFGRARLTGQELAPDMSGLPQIDFKYAAPEQARRDHP
VLDTRSDLYALGVILYEFLVGRPPLLAASIADWLHAHVAIDVLPPSHIRG
GIPPAIDAVLLKLLAKDPGQRYQTASELQAEIARIAVLAWSGGRGGHTSL
SVRKAGRPGPSRRRVVWP
>RPA3187 sensor histidine kinase with a PAS/PAC domain
MQVWEDHARTGSAGLVRMPNAVSSFIQSVRTRTLSIGQMTFGSFLLLLTI
IAATSIGSVVAIRHIDRTFGELQRLQSVGDLAEEIERRMSDLRFAARQAV
TEPAAQPAGKVFAAASALTELLKKTRLELAPDQQEMLDGVTERLTNYRDG
LQRITELMQRRGELVAKIPALREAFEATIAGLSDRKLAGDLHSAQIKVGA
ALLSRDLMGASDAARRMRALPIGDAAAARSVRDYAELIASTAAVEQEIAD
LDRDVLGTEGRLIGKVTELLRDAAARRGRVLSRDLARTLAEDKWQSIVLG
IAGVLVGWMAAAFVVRRTVGPLTAITRAIRSLAAGQQYTAIPATDVKNEI
GDIARAAEVFRRTLVDADNAREAAVRALAEQRLAEESYRKLFEGSIDGIY
VTTPDGALLNANPALARMMGYDSPAELIRATADVSTTIYLDPAKREEYRE
LMQRDGMVREFEYQARKRSGDVLWLSDSAGAVRDEAGNVIRYEGAVRDIT
DQKRAEQAVAASRLLLQQVIDTVPAVINVKDTELRYVLMNRYMAGVFGIH
PRDAIGRTTAELMSRFGSHKTDANDKRVLATGEGLGFYEEEYRDATGATR
QWLVNKMPLKDADGEIERIVTVALDIGERKRGELEMRQAKDAAEAALRNL
RETQQSLIEAEKLAALGRLVAGVAHEVNNPVGISLTVASALERKAAVFAT
EVARGELKRSRLNEFLETTRDASSQLVANLNRAAELIQSFKQVAADRNYS
DQRLFDLGDLTEQVVMSLRPGLRKHNLTLNVECQPCLMMNSYPGPYGQVL
TNLFLNSVAHAFPNGRAGTVEIEVRAAGNDHVVVAYSDDGCGMSLDVRRR
AFDPFFTTRRDQGGTGLGLHIVYNIVTNRLGGRLELDSEPGNGTRILMTL
PRTAPQERAELSAASGS
>RPA3680 possible pilus assembly protein cpaE
MISYSRQNQDEPATAAPDAGPEEHIAPAPRVSVQAFCETVETAAAVQAAG
EDRRLAKAHLKIQMGGVVAAIEAYRSAPTPNVIVLETDARSDVLAGLDQL
ATVCDPGTRVIVIGKVNDVTLYRELVRRGVSDYAIAPVQPIDVVRSICNL
FSAPEAKAVGRIIAVVGAKGGVGASTVAHNVAWAIARDLALDSVVADLDL
AFGTAGLDYNQDPPQGIAEAVFAPDRVDTAFVDRLLSKCTDHLSLLAAPA
TLDRVYDFGADAFDSVFDTLRTTMPCIVLDVPHQWTGWAKRSLITADDIL
IVATPDLANLRNTKNLIDLLKGARPNDRPPLYCLNQVGVPKRPEISTNEF
AKAIESQPIVSIPFEPQIFGAAANNGQMIAEIAANHKTTEMFLQIAQRLT
GRGEAKKPKGSFLGPILEKLRAK
>RPA3434 Universal stress protein (Usp)
MAAAARAAVKADERCDVMVTGCVNQVEVSVKSGCDDRSVAGGGVPATLVC
FDALSSREPVSPSLETANRTRPMQKILLPYDGSANAGRALDWVIALAHDN
VPIELVLVYAHPEPALYGEIAVYVSKEKMDELQREHSDDILQPAIAKLNA
ANIPLTSEVLTGDTAQRIVKRAEELNCSGIVMGTRGRSAIGNLVLGSVAN
KVVHLTKLPVTLVK
>RPA2152 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain
MARRSAATAAVNSAIALSFRQSHDARVRSESRFQSQMAELPSAPDAHTWG
MITLAAVLCALGVVAAYGGLRSIRVSEGKGRRHWIIATCFASLSAVAAVV
ALALLAASDAPLAPTIALVLMIGSVIATTGFASLAVWLSSIAGRRTQLTL
AERDMVLDAILNDAARGFCLFDAVGRLQLWNEAFLDIYGIPPGREIAGHS
LRRTLAVMQNSGNFVSDKRQLIELGAALASGGPASLVAELRDGRHIRIDL
RRLPNGGWIAKHSDVTDHKQAEQRFAYLALHDVATGLPNRAAFNDRIVQS
VEQARRFDGSFAVIRLGIDRFKEINDVFGQAVGDAVLAEMARRLADTCHW
GFLARPGGDEFSIVTPPDAAADSIQDVCRQLTELCDTEFEVDGHRVRVGA
TAGVSVYPRDGDDADTLIAHADVALYRAKTEQRGTVCLFEPAMDLQIREK
RALQRELAVALEQRQFEIHYQPQASTSGEIVGFEALLRWRHPVRGMVSPA
LFVPLAEETGQIGPIDEWVLRSVCAEAASWAKPLAIAVNFSPLDFRRFDV
PALILQILLETGLEASRLEIEITEGVLIDDFAGAIAILRKIKNLGVRVAM
DDFGAGYSSLSYLQSFPFDKIKIDQAFTRKLETNPESAAIVEAILSLART
LKLPVIAEGVETEKQLAFLAQAGCDEVQGYLIGRPQPIAHYRDLTTGETV
AAAPLAQAV
>RPA1556 phosphotransfer protein with response regulator receiver and Hpt domains
MKSRILHIDDDPAMLKVVAAVLSRDPDLETRGCLSAEEGVRAAAEWLPDL
ILSDVSMPDVDGVQFLEELRNQPVTMSIPVVFTTACGRFDDISDFKSLGA
SGIIAKPFNLRELISSVRSYLDLAAAAADDAEPLPEVEIRDRFREDAALL
RELREPFESGAAPDGLRHVAHKLVGVAGIYGFAAISTAAAAVERALKQAV
QHPESRTDVVSRLDELLDLLDQNSGLRPD
>RPA1930 two-component transcriptional regulator, winged helix family
MLHQSPQSLKKSDSNMRLLIIEDDRESADYLVKAFREVGHIADLASDGEE
GLAMAESGDYDVLVVDRMLPKRDGLSVIGSLRDKGNRTPVLILSALGQVD
DRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHGGPAEETSYRVADLEL
DRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFD
PQTNVIDVHISRLRSKIDKGFDHPLLHTIRGAGYMIRDGLR
>RPA3380 response regulator receiver (CheY-like protein)
MYRIDFNKLRFLICDDNPHMRRILRTLLHSFGTREVYEAEDGATALEMYS
HYSPDILITDWEMPIFDGLELAQMIRQPEAKGNPYAPIIMLTAHSEKRRV
TLARDAGVTEFLAKPISSKGLYQRILNVVASPRPFIRTRNYFGPDRRRNT
TAGYIGPERRHGGEADIIQQPSLLDKARVNT
>RPA0283 two-component transcriptional regulator, winged helix family
MPNARKILIVDDDNDLRDALVEQLSLHEEFEASAVDTGAKGVQTAKALSP
DLVLMDVGLPDTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGA
NDYVAKPFRFAVLLARIRAQLRQHEASEDAVFTVGPYSFRPGSKMLTGAN
AKKVRLTEKETAILRFLYRAGQAPVSRETLLQEVWGYNSGVTTHTLETHI
YRLRQKIERDAANPEILVTEAGGYKLVP
>RPA3219 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
MTRADSSFKAIALAKAQARTALRNVRLTLISNIAIALSLAALLYRENGET
PILWWLGVAIPLALFRAWWVSRLAASGAVDTAPHQVLRHLTLLALASGLL
WGFVPAAVGVFSTQHGLDYITFIMIGATTGAIIQGAAYSPVSLAFATPVM
AATLFRIMMSGDSSDYIIALDGVFLTFMLFRAAIGGEREFTASQMTALEA
TDLANSLASANNEVLNSNRALEQIARADPLTGLANRSHFRDAAADACRSG
QGVAFVLFDVDNFKIINDTRGHDAGDRVIAAVADLLRLSCGSHDLPVRLG
GDEFIVVLKGDDVAARALSLARRLSGALTRPLQVLGQPLAITCSIGIAAH
PGGPIDVEDVFSRADAALYRAKDDGRACIRLFDARMQEEFLLQRCIDGDL
PGALARGELHLEFQPQVVLATGQVVGFEALLRWRHPTAGLIPPPDIIHAA
IRLQLSARLLSFIGDAACYFLRALDASGAPPVNVAVNVSPRELTLHSPAK
ILMDLTQRHGIDPRRVEIEITEEALFDPKQCARELQRIEHYGFGLAIDDF
GVGHSSISNLMSIALDTIKIDRSFVHGVSANRQNQQLIAAITAVARPLGH
RIIAEGVESQGEAETLRMLGCSYGQGWLYGRPMRAADAVAWLAGLDEERR
RERQLA
>RPA4245 conserved unknown protein
MLSDIVAHIPADRPADGVVACAVSVAKAFDAHLDGIVCTYQPINPAIMVG
ASAAYYAAATQLNTDADEAAARLDQFEIAARAAGVTHGARSICDTPVLAN
QALSEISRLYDLTVLVQPDRAKPGHQDPLPEAVLFNSGKPMLMIPYIHSG
PLAFDRILVCWDGGRPAARAVHDAMPFLSRAKMIDVVSVNEDEDVVGQAS
SSALLAHLMRHDLAATGHQLTSPPGNIHNTILSFAADSGANLLVMGGYGH
SRLREVILGGVTRGIFKSLTLPALISH
>RPA2658 hypothetical protein
MARKTDDLADSFATEETGGWLTRLLADEEELNTQDKWRLGSWAIASLGAV
VLAIMAVQNVTDRRREQTAAADVAQQSQMIQRLAKDTQTATSRLTAAIES
LNTDRDRLYARVGTLEQGLDSVTGSIARVQSGSSKPNAPAADNPIDRWGA
AATLPEFPTKETPPPAPPVAPVESKPNSPAAPSKKLGAIEPSPTAAAPAA
SPAVAATIPVTLAPTKPEEPASAQAPAAAEAKKPSDDKAVAEKPQERSRL
DKPRLEPAPPERPAAQTTAAMISTTPLMPSRSILAPPDPGAAKLLEPKAA
TSPEETGEDAEAAAETPAPRTDFGVDLGAANTVEGLRGLWRKLSKTQKAL
KGLQPIIMIKENGNATQLRLIAGPIADAAAAAKVCAALGSADRACEASVY
DGQRLPMAAPASAPQAAPQRPVRRHRERVTLQQPEPPPPPPAPAQDAPPP
PRPATLSSILGIR
>RPA2476 putative diguanylate cyclase (GGDEF)
MAALQDDHDRTMAYAEVALSQIKTLRQGAVPRNYEIWYVYATGHNPELNK
AINDTLAERGNLTDADLDQLHDTYLTQGRTTDRIDRIGARVANEIDDIMA
LLAETLGNTASFGDDLRGESQKLSLATDHDQIKAIVERLVVTTREMQQAN
SALEERLSTSKQEIANLQVSLDAIRAESLTDPLTGLGNRKHFDRTVQEAI
RNAGASQQPLSLLMMDIDHFKSFNDTYGHLTGDQVLRLVGMTLKQSIKGQ
DFTARYGGEEFAVVLPNTPMRQAIIVADNIRRLVMSKELKKKSTGEILGR
VTLSAGVSTLKPNDDAEALIERADACLYAAKRNGRNRVICETDPEFAGIT
QAAVA
>RPA3792 putative diguanylate cyclase (GGDEF)
MTDQFPADNDRRASDAQDSEHPMRGAGARRRFLIGTLLVNIAALTIDVFA
LDPQHLALALGLRLLVVTPLVLLALALNRRPADRPLQTAAQATAVVAFAL
SVTAIGQFAPEPFAGRYMMAALFVIFAGTLVSALPWRATRIMTIAAAALY
TLIVVSGLRWPPAWSNIDLVGLCLVTCVIALRARQRKDVQIAELQQIRRR
DALLKQELRQANAALGRLSTTDPLTGVFNRRYLDELIEQETASLVPSLGQ
SVLMIDVDHFKLFNDHGGHAAGDSCLQQIVTAVRRNLRSCDVVVRYGGEE
FAVVLPGLDEAELRETAERLCHAVSDLQIPHPGLGQGRVVTISVGIAPPV
PAETLADAIQRADQSLYRAKRAGRNRVSA
>RPA4140 sensor histidine kinase with a PAS domain
MFDEAGEISAANRSAEALFGYDGDVLVQHNLIELFAPESRAAVLDYLDSI
KSGRAQSVLDHGLEALGQVREGGLFPLSMTIGRTRTDGPNFFAVFRDLSQ
LQRTETELSQAKRLAERATGAKADVLARLSHEIRAPLNAIIGFAEVMIEE
RFGPLGNERYVDYMKDIRASGERVIGIVDDLLDLSRIETGKLDLAFASIN
LNELVEQSVAVMQPRANRERIIIRTSLAHSLPTVVADAQALRQIIMNLIS
TSIHLANAAGQVIVSTALSDAGEVVLRVRDTGSRLNDDELAAALQPFRTP
SDRTEAAGVSLSLTKALVEANRATFHIKSAPQSGTLIEVVFAHAPAAV
>RPA0447 possible phoH-like protein
MVVDSRGNHITIGGSREGCDAARRVLETLYAQAISGHDLVQGDVEGAIRA
VIAQGSLFEFDTKQPSATAFEAINLRKRPVRARTAAQDSYIRALKRHELV
FGVGPAGTGKTWLAVAHAAQLFERKEVDRIILSRPAVEAGERLGFLPGDL
REKVDPYLRPIYDALYDLMDARIVERALQSGEIEIAPLAFMRGRTLTNAA
IILDEAQNTTSMQMKMFLTRLGENSRMIITGDPSQVDLPNGQTSGLAEAA
RLLSGVEGIAQVQFRAEDVIRHELVARIVAAYEGAPSPANGKS
>RPA0145 Metal dependent phosphohydrolase with a response regulator receiver domain
MRIMLIQALVVDDSRSALDYLKRTIEADGQVHVIAFTDPLEALSSARNID
IDIVFADYEMPKMDGISLIRRLRSLPKFSDIPIVMITSIESDEVRLQALD
AGATDFLPKRPKSLETQVRLRNMIRLGSAVRKLNDRAALLASEVARATHA
LQEREEEIILRLALSVEYRDNDTGDHTLRVAKYSRMIAEGLGLPERLCRD
IYLAAPLHDVGKVATPDHILLKPGKLTPDEIAVMQTHTTIGASILAGSRC
ELIQLAADIAIGHHERWDGKGYPNKLKGAEIPIAARIVAVADVFDALATA
RPYKVAMPLPVARQHLENGRGQHFDPTCVDVFLARWDEVVAIATERLKLQ
QTHDAPLQPSLPPDAREPTITLPASNRKAGQMGLVPSE
>RPA0317 sensor histidine kinase with a response regulator receiver domain
MAGKLRIRSRLRLLARRHPRITMAGRAVMAFSAGFGGAYGLLLGSNPETS
GYDPHAFAVGASFLFALACLALAVQTMRLRRMRGRLRLLTASQEPPPDLQ
PNQSKTRALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLD
TPLSAEQATYAKAVKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSS
LIEDIIELLAPRAQARGLEIAADIDERLPVSLIVDAARLRQVLLNLCGNA
IKFTETGGVALIVERGDQSGELRIIVRDTGIGIAPDAQARIFHEFEQADA
GIARNFGGTGLGLSISDRIVAAMGGRIALESKPGEGSTFTITLPLSTAEN
DRATAAFAPPDLHGSSVMIVSAHGVEASLAARRLERWGAETCLCDDLAAA
IARLPERSWHAVLIDHALGSDAIETLAREAQARATHRLVMLTPAARHELL
PDLPAAFTGYLVKPLRSASLAARLGTAVEVATPSIADGDPPPVQDASSAI
THEAFAILVAEDNDINALLIRALLHRLGHHAEIVGDGRRAVEAWGAADNT
GTPFDLVLMDVQMPILDGLAAARQIRTLEAERARSRVPILALTANTLAED
REACLESGMDGFLVKPIDPDRLAAILAGVAAAHQAA
>RPA2077 probable transcriptional regulator, Crp/Fnr family
MDRGNRRPEAFKETHVQRDACFALVRRGRVLCAHCPGGDDPASPDEANHK
GVPMVHPFLRKLRHGARLTKDSEEILLRLTQSSRCIGAREDLVPVGGQPH
YLPLLVEGWACRYTTLENGRRQIISLFLPGDLCEPFGALPRFMDHPIGTL
TPAVIARVRTDAVRNAAQLSPRIEEALWWDLLVASAIEREHLVSLGRRTA
TERLGHLFCELHLRLGLVGLVDEDELSYEMPITQADLGDLLGMSMVHINR
SLQELRRTGMISLRGRRLTIHSLEGLRELSFFDAGYLHLFGPLSLLNTDG
SDLGTTTR
>RPA4367 sensor histidine kinase
MSTLDTGLTLIRSAYGRVSAANGYLGQRFNDFMPKGLYARALLIIIVPMV
LLQSVIAFVFMERHWNTVTQRLSAAVVQDIATLIDVYKSYPQDKDRAVLR
RIAQTRLGLVVDFLGPGEMPPPGPKPFFSLLDQSISKQISRQIARPFWID
TVGRSSLVEIRIQLDDAVMRVFALRSAAYASNSEIFLLWMVGTSTVLLIV
AVLFLRNQIRPVLRLADAAESFGKGRDVPNFRPRGAREVRRAAYAFIEMK
ARVERSIEQRTAMLAGVSHDLRTILTRFKLELELIGDAPETEGMRKDVDE
MSAMLEAYLAFARGDSGEQAQPTDMAAALEELRSDAERHGHVVSVAFTGQ
PVVTVKPASFKRCLANLVSNAARHAHTIAITGARDHRYLTVTIDDDGPGI
PMAMREEVFKPFLRLDDARNQDEGGTGLGLAIARDIARSHGGDITLGDSP
MGGLRATVRVPV
>RPA2299 possible two-component transcriptional regulator, LuxR family
MLGSQLSKIIKGVGISALVIDRDGKILESSEETGTPATSKAKSKLGKSYF
DACIRPDRHSLELLRGFKSLAEKSIDFFSTVSWREEDGERKHFLIVATPS
EDDPDAIVVLHIDLSVLLGGRQELSALMIGQGAAAAAQAEAAMIGAVRGA
IVEALAASHDRTPTLTIPKPPVADHNVFSELTPSQLELLPYLASGKSNRQ
IAKERDMSEFTIKSQVAGIIQKLNVANRTQAALLAMRNSEALGMRRPA
>RPA2111 PAS domain:sigma-54-dependent transcriptional regulator, Fis family
MDLSSPSSFTATIDAPLRAAVFDSAVEAVLLVDPTLDQIVDANNAASALL
GHDRDTLLQTRFSALHGAQLPALVVFTQAVFAKGTYWTHALTPLHADGTQ
LRLEYAGKLLPYRGRSLLLLTMSDLEQRRRRYVDAVADDYMRDGLPAWQR
VERVFQDIERENQLILRAAGEGIYGVNAEGKTTFVNPAAERMLGWSAEEL
VGKEMHAMVHHSHHDGRHYPGQQCPIYAAFRDGAVHTVDGEVFWHKDGTP
VWVEYTSTPIHDRSGGVVGAVVVFRDVNQRHEADEKLHAALAEVDRLRER
LQLENDYLQEEIRIETNPRGIIGQSEAIQTTLRQVKLVAPTAATVLITGE
SGTGKELIARAIHEASTRRDRPLIRVNCAAIPRELFESEFFGHARGAFTG
AVRDRIGRFELADGGTLFLDEVGEIPLELQSKLLRVLQEGNFERVGEERT
RNVDVRLIAATNRDLKREVQRGHFREDLYFRLSVFPIESVPLRDRREDIP
LLAQHFLTNEARELKTELRLSQGDVRRLMRYDWPGNVRELQNVIERATIL
AQNGRLRLDLPESAGSHASATSGRQKPDARPVVMTVADLRNLERDNIIAA
LRACKGKVFGDDGAAAMLDMKPTTLASRIKALGITSPRAQA
>RPA1313 sensor histidine kinase with multiple PAS/PAC domains
MGIIDRRRRRAVLVVAVVAAVLIFVADALSPIDGAVAVLYTGVVLMVAPL
GRKFIVVAGYISAVLALTAFLWGHASDLVGGALLRLVVSLVAILITVLLS
MRDRSARISLAEQVRILEASHDTVIIRDSAGIVRYWNEGAERLYGRSRDQ
AIGRHYAELFDESAPVDEIDRSMREAGSWSGEVVRTRRDGARLILASRWL
QRRDPEGRAIGVIEASADLTESRRAQAEQRRSERRYSTIFNSAGFAALEC
DLSDALSLVLSAGADVAASLRADPALLAAAVERIVICEANPAALEMFDAD
GPGELIVAELLAFSIPDARQALETIFVALTTGSTQIETETRFITRRGRTI
DAVLRLSVLPDGTDWSRVLLMAVDVTERNEARTKIERISAELAHAGRVSV
LGQLAASIAHEVNQPLAAIINYGKSGKRWLVRPTSDIGEVAECLDKIVSN
ANRAAEVVGRVRFLARKSAPLTDSVDLVVMLQDAIELLRREIHSVKATVR
VELSTPIAMIDCDRVQVQQVFVNLLMNALQAMRGIDGHRQILVRIEDSGD
SLTVAVCDTGVGIAGDPARIFEPFFSTKSDGMGLGLSICRTIIEGQGGQI
LASNNDGPGATVAFTLLRNNPDEGRHNRRLIS
>RPA4010 response regulator receiver (CheY-like protein)
MTTDETHTRLIVLVVEDEPLLRMTAVDMVEEAGFTALEAADATEAIRILE
SRFDIRIVFTDIDMPRGIDGIRLAAVIRHRWPPIDIIVTSGHVDAGEVDL
PARCKFLPKPYDERLVIAAMRSFAA
>RPA3863 transcriptional regulator, Crp/Fnr family
MMRGRNPGVRNSLRGRIRLTHSFSFAGYHVTSREVPFDPKVFLRSAGTGR
AVLQFRAGQTIFTQDEAADCVMYIQQGRLKLSVMSEQGKGAVVAILQPGQ
FFGESGLLEHRRRATAIALEDCTVTSITNATMMATLQREPAMCELFTRHL
VARNTRVEDDLIDQLFNNSEKRLARLLLLLADAVEASRPVPIEISQETLA
EMIGTTRSRVSYFMNKFRKAGFIDYNGRIEVHPTLRNAVLPDRPRALEPE
>RPA1558 sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain
MNDFKDAKRKFEGAPVPAPRRPVRRGGRALIRLFGVAVIVSLSVMAGRIA
SQHTRAWEPPGVGHGLDVPWWIFVISLAVGLSIAGLIELQLSRYERRNAH
KLRQAHLAAIVEGSSYAIVGQSIDGTVLSWNKTAERLFGYTAEQAIGQNA
TELMVPDDLRDEEQQMLSGISDGTAFAYLWTKRKRANGTLVDVAVSISPI
RADDGRLIGMAASMRDITDLVQAEREVHDLNAALERQVAERTCQLEKTLT
LQTAILERAAYAVIATDVTGTITLFNPAAERMLGYKAEDLIGRASAMLFH
DSDELAARAEAMRKEGISVSSNLGVLQARLARNDPDTAMWTYIDAMGNRI
PTRLTLSRLRTKTGVNLGVLGIAVDLTEQLKYEDELKAARASAEQASAAK
ADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDTRRQVMRIFEASDSLR
VIIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKLIA
TAQATPPVLIGDAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLV
RLRISVADTGIGISPEAQKGLFKRFSQADETISRKFGGTGLGLAISQRIV
QAMHGELKIDSQPGVGSTFYFEVELPVAERLDIERLDAQVHCSRSVKILV
VDDVEMNRDLCKTMLTRAGHDVDLADSGATAIAMVASRTYDLVFMDVQMG
EMDGLEATRRIRALGHAYRDVPIIALTANVLPEQVERYKAAGVDGHLGKP
INRAELLACVARWIDGDIAHVPSEPLAPVELGSEPEHPVRDQAALEDLRM
FASEHDIAGFAEQLRDTITRIRAQWPHHIDAMKLDHEARTALGAAAHKTV
SLAGQLGFKQLAAACRRMEAACAPHRDIHDAFAALHAALDNAEPVLDAPH
ELT
>RPA1489 two-component transcriptional regulator, LuxR family
MDQQSPSRLRVFIADDHPVVLSGMKALVAGDPGLEVVGEASDGPNALRRA
TELKPDVAVLDLSMPGLNGIEVARKFLATCPDCRVLVLTVHEDGAYLRQL
LDLGVAGYVLKRSATEELIRGIHAVGSGGIYLDPAIAGRAIGRTTPHLHN
GDEHNAVSELSTREIEVLRLAAIGHSNKTIAAKLQIGAKSVETYKARGMA
KLGFHNRVEVVRFALSMGWLSDP
>RPA4481 methyl-accepting chemotaxis sensory transducer
MTNLCSLSKAQLNLAVIIVASSIALALEALDYRPAAMTIQGFAILASCLA
LYRMVQTTRLISQARDVCLRIAAGDFEARILRIPDNGRTGDMLRAVNDVI
DGCDAFVREATAAMDAVQHRRYFRRILPGGLHGALLRGAETINAATDSIE
QRINTFAQQAEQLESAVTGVVSSLDEDSRGMRDTAGSLTSGASLTRERLT
TVAASAEHASSNMRSVAAATTELSASAREVGAEIGRSAEVVGRAVSRVSE
AAANVASLRSVAERIAEVVKSIEVIAGQTNLLALNATIEAARAGEAGRGF
AVVAAEVKALAEQTAKFTGEIEAQVEHVHSAADLVSRSIGEIGAVMTEVD
DITAAVAGAAEAQSAATADIAKNIEQAYDVVSEITGSIQTVTESARDTEQ
YAASTMTASTHLSSQSETLAHRIRDYLARVRADMLAQRAA
>RPA3832 putative diguanylate cyclase (GGDEF) with PAS/PAC domain
MRLPRWRAPARGARATATRAPTLIRDMPDRGHDGPGQPHPSEPLCQATLC
ECLNENALLAKYAIDRIADMIIWLDEHGRVMFVNAAATKLLGYSQAEFLS
MTVLDLDPLFDADIWRDHWREVESRGSFTLETVNRTKDGVDVAVEVTVNF
VECLGRKMNCSIVRDITERKRAAEQLAEMHRKLVQANLTDELTAIANRRR
FDGVLSTSYATHMRSGAPLSLILLDIDHFKAFNDRYGHLEGDRCLQRIAE
VIDRRMFRAADLAARWGGEEFVCILPDTDEAGALAVATALREAILDLAIP
HEASPIARVVTASLGVVTATCVPDKTAHSLFETADALLYEAKNLGRNRIV
RSPSRG
>RPA0764 conserved hypothetical protein
MTKRLLLAAIAAATLVAPAIAADSISLSHFLEQWDGNNDGVVTLAEIKQG
REHRFYAFDANADGYLDRDEYARFDKVRDAGIARFSAEEQVKIRQIADGL
TLPRNDTDGDGRVSRAEFIDGSAAWMKAIDKDGDGQLTSRDFPD
>RPA1096 methyl-accepting chemotaxis sensory transducer
MAFGLFRKRSPETAALNVVAASPPAAAEPTVAEADSAREILELLELELGS
LIRQLERAAHSVTTGVQSTTSTLHTIRERTDALSGRTSAAQTTASSFSQA
ADKFTHSAHGIGAQVRQASQLADDASAAADEATANVERLRDSSAAIGNVV
NLISQIARQTTLLALNSTIEAARAGAAGRGFAVVATEVKALAVQTQEATE
EIKRKIDALQRDASSSADAVHRITSAISAIRPVFETVNGAVAEQNATTGE
IAGNATSASTFIASVGDSAAEIDSATREAEQHGDEVARAGQNVTNFAEKL
RARTAVLLKLGDREDARRREKLPCHLQIELDTSRGRITAPVYEISMDGVL
ISGPSAAALTTGQQLSAELQDIGACRIRIAEHGKAGALALFVAPDAALQN
RVEDRLWAIRDENTEFVTRAIEAGHELSKIFERGIASGALTLEQMFDENY
IEIAGTDPKQYRTQYLDWADRALPPFQESFLAKNRRMAFCVMIDRNGYLP
VHNKLYSLPQRPGDVAFNTANSRNRRIFNDPAGLAAGRNTRSFLIQSYAR
DMGGGQTVMMREIDVPVRVRGRHWGGFRTAYKL
>RPA4137 conserved unknown protein
MADSSDPFSTVLPFQLPEQVRAFAEKGVSQARESYAKLKDVAETQNGTIE
AVFTSASKGATDYSTKVFDFVKTNTSASFDFAQSLIGAKTLPDVMELWTS
HAKKQIETLTAQTKELTELTQKVAAETVEPIKANASKIFKPAA
>RPA2769 putative diguanylate cyclase (GGDEF)
MSLDISTLFLVATLICALLGVMLHYFGRQEKMPALNWWGNAYLLGAITVA
LWTILSPIFGEAITLAMASIGFIACGMMWNAARVFHGLKPNWPGLFLGAL
AWLAAVASLPPEQEALRMTIGAAIVAAYAGLTASQLAAERRKSMHRRWPT
IVVPLLHGAALMLPIVLADLWPSPHSGFAGNVWVVLFAVELVLYAIGTVF
VIFMLVSERSVSLHKTAASLDPLTGMLNRRGFSEACARMIEREAMAGRPV
SALIFDIDHFKSINDRFGHPAGDEVLKLFAAIVTNSLRISDLSGRIGGEE
FAALLPCPIDEAVTAADRVREAFQNCGIEVDDAPVATTVSIGVAGGPAAV
ELEVLLAAADTALYQAKRGGRNRVVATVEQPVSLEESRRKAAQTREHQVV
ARGSEVGQAVA
>RPA3353 putative serine/threonine protein phosphatase
MPFLPDGLRIYAVGDVHGRADLMERLFRLIDDDLAKRPVVRPVCVFLGDY
IDRGPKSRDVIDSLIRRSRERELVFLRGNHEAVAMKCLSDEGVFENWMRR
LGGVETLVSYGIEPKKVLSESGVAELQSAFRDSLPDAHHRFLKGLQSTFS
CGNVFFAHAGVKPGVALSDQTERDLLWIRDEFLSSTVNFEKLVVHGHTPV
QRIDVRSNRINIDTGAFATGHLTCLVVDRDALTVLATG
>RPA4738 response regulator receiver (CheY-like protein)
MARILIADDEESMRLLVARAIGIDGHETVTAEDGSEALEILTSQNGKFDL
LLTDIKMPIMDGIALALAAARDFPDLTILLMTGFADQRERAFGLDAIVHD
VVTKPFSVADIRTAVADALSAKKSSS
>RPA3101 conserved unknown protein
MLHQGSFQRRRCQMKLKSVLCLVAGASMFAASATFAGEFGTADEAKAMLT
KAAAAVKADKAKALAEFAKGEGGFKDRDLYPFCGGPDGLFTAHPTLTGKS
LKDLKDKTGKPLGEEIYATAKEGEVKEVAYMWPRPGQTDPVQKVSFVTKI
GDQTCAVGYYK
>RPA0521 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
MGVVSVIRTADLLEPQASGNAPGGAADHDPSHRTAQLTLAAFMAIDIGLA
LISPEGEIVMTNPMFDLAFGAIPHEQLLSRFGFDACREGGKVARPAIFPG
DRIYWVDITSFPDGWLISAADISERLRQGIVGAELARTDRLTQLANRLVF
HERLADLLAQPADVRRDAAVLTIDLDRFKAINDSLGRNIGDALLCLVAKR
ISSALTPSDVLARIEADEFGVIQVGRDQPDAAVILAKRLVDLLSRPYLLE
GQLINVSAFVGIALPIDDELDVDGVLKNADLALHRAKQERYAGYRVFESA
MDESMRARRALETDLRRALALREFSLVYQPQVNLQSRRVAGFEALLRWRC
PRRGPVSPLDFIPIAEETGIIGPIGEWVLRTACRDAASWPGDYTVAVNIS
AIQFTNRSLVATVVSAIADSGLDPRRLELEITESVMLDARGNALAVLQQL
RGLGVRVSLDDFGTGYSSLGYLRSFPFDKIKIDQSFVREASDDRGNRAIV
RAIASLGASLGMATVAEGVETEDQLARVAADGCTDVQGYLISRPIPPGEI
EHFLAESRNVIDAATEVSL
>RPA3132 putative diguanylate cyclase (GGDEF) with response regulator receiver domain
MSARILVVDDIPANVKLLEDRLSAEYFDVITASNGIQALEICQRAECDIV
LLDVMMPDMDGFEVCRRLKSNPKTHFIPVVMVTALDSPADRVRGLEAGAD
DFLTKPVSDVVLIARVRSLTRLKMMTDELRMRAITSLEIGMQAPEREAVA
DQGKGGRILLVDDRPSSYERLAPLLSAEHDVDVETNPSEALFHAADGNYD
LLIVSLGLENFDGLRLCSQARSLERTRHVPILAIAEAENNARLLRGLEIG
VNDYLLRPVDKNELMARARTQIRRRRYTDHLRDNVQHSIEMAITDGLTGL
HNRRYMESHLATLAEQAGARGKPLALMILDIDFFKSINDSYGHDAGDDVL
REFALRIKKSIRGIDLACRYGGEEFVIVMPETDLHVAQMVAERLRRAIAG
EPFAIEKGTRRIEVTISIGLSTLERKGEPIPDLLKRADTALYRAKHDGRN
RVVAAAA
>RPA0992 probable transcriptional regulator, Crp/Fnr family
MKDVHRVLIDKLREHSRLSADDLIAIRDLSFTLRELESGEDLIRQGESPK
GAALVVDGMLGRYHLQRDGRRQFLSFHMVGDLPDSQGIFLERMDHSLCAI
GHAVAAIIPHREILRMFEARPGLGFAIWRETLVDAAIFREAITNNSARTM
KARMAHLFCELFYRAEVSKLTDGNSMQLPISLAQLGDTLGMAIATVNRTI
SLLRASKTMDFRYGVLTIRNWQSLAKIGEFDPGYLHLKRAPAR
>RPA2433 response regulator receiver (CheY-like protein)
MSNPVTIIMIEDDEGHARLIERNIRRSGVNNEIIPFTSGTAALNYLFGSD
GTGVEHQHRALLVLLDLNLPDASGIDILRRIKENDHLKATPVVVLTTTDD
AHEIKRCYELGCNVYITKPVNYESFANAIRQLGLFFSVIQVPQPDAP
>RPA0282 Cyclic nucleotide binding protein
MSIEDDVALLARVSTLRLLGEQALRMLAIGSEQRDFARGDVMFNVGEPAD
AGYVVQRGAFQITMENGGVHETVARPGDLIGELALVMPMRRQTTAVALEY
STAIRIARSLFQRVLESDPGAALRLRDEFAARANQVASDIVMVGSKLTS
>RPA3022 putative diguanylate cyclase (GGDEF)
MRFPVLSRFLHPDPRIRRELVELLYTSLPQVMAIGVTSVTGALALTLLGD
DPGYAVITFFILVTATARVFSLMRYKARAARFTDADVVRWERLYGAGATA
FGLALGALSFRALQLGDAPGAWIAFGLSMSYCVGMVSRAAIRPWIILTAA
AALLMPTMIAGLMRPELAYKIGAGMLVLFWLTLREASKHLSAAFTERLEA
KHRLARQATHDFLTDLPNRAGFLQALSDMAGNFTVVAIDLDGFKPINDRH
GHHTGDDLLRQVAERLTTCVGADGVAARFGGDEFMLLKPVTSAEQGRDEA
LALARKAVFDLSMPYLLADLPVCIGASAGIAISHAALAGGNTAQLLERVD
RALYVAKRAGGGCAWADGDIEPSCCPRSTPLAKDSAAA
>RPA4202 methyl-accepting chemotaxis sensory transducer
MTNLSSLFKAGLCLAIAGVGSLAAVAGVVFGLPLLLQVGLGASLLGAVGV
AAMLLRLDRMLTQIDEVCGRIADGDFEARLIGYRDGGRLLQMQNRFNDMI
DRCDAFVRESSAAMAAIRDDKYYRHILPQGLRGSLLIASRTINEAMQAIE
TRVAAFNANTSEFETAIGTVIDAVGAASSNMGETATSLNRGVIATRDRTL
AVSAASEQASTNMETVAAATAELTASANEILGSVNRSASIAQAAVAASDH
ARDTVGSLSTATERIGAIVQLIEEIASQTNLLALNATIEAARAGDAGRGF
SVVAQEVKSLAEQTANATRDISRSIAEVQETTRAAVDAISGIGRSIGEVD
DITHQVALAVEAQTAATGEVARNIEEAFAGIRDISGNIQSVGSNITETEQ
HAEVTLSASGTLAQQARSLGDAVRDFLRTLHRDGLESRKAA
>RPA0007 putative signal transduction histidine kinase with PAS/PAC domains
MMSAVSALSRAELEARLEEAEETLRAIRDGEIDAVVVRAADEEQVFTLEG
GGQSYRTFMETMDVGAAAFDQDGQLLYANQALCALLDCAHGSLTASALIA
LLDPANQAAFRRLLAQAQRERQSAEIHLRVGDAERSMLLTGTPLEFGVVH
GAAITFTDISEREQAAAARESERLARAILASANEAVIVCDRAGRVTHLNG
AAMRICAEAPVGKTFAEAIALSFPEASELMSSDDIVTMATAGLPVQGLEA
AVRIPSAAITDVMISAAPLVVSGERTQGCVVTLVDLSQRKAAERHQALLM
GELDHRVKNTLTMVMAICARTAAHERTIEDFQKSFTGRIQALAATHTLLS
NASWQNLHIRDVLAAELAPFASLSSGRIVTDGLDIAVDAKTAVSLGLVFH
ELTTNAVKYGALSVPSGRISVRRVGATDEALTIEWQEHDGPPVTPPQSSG
FGQTLISRSLGNGGAKLEFDSAGVVCRISIPRS
>RPA4306 methyl-accepting chemotaxis receptor/sensory transducer
MKFTNLRISPKLGILVGVAMLGLVASGLFAASMLQREMSNERFEQTKALV
ESALNMAIGLQKQVAAGKLTKEQAIAEFQQRAQSMTYDGTNGYFFAYKMD
GSVVVMSDPKMIGTNRLDVETGGRKIVRELRDGVAAKGDVTLIYEFMKPG
SSELLRKVSYAAAVPGWDMFVGTGAYLQDINAKLKPLLTWLGVVIVGIGV
VCALVAWLISRSITQPLGALGTRMTSLAEGQLDAPIPGVDRGDEIGAMAK
TVQVFKDNAIRIRGLEQQEQEAQRRAAAERSALMQSIADDFERSVNGVVR
SVADATRYMQSTAQSMTSTAADASTRAAAVGAASDSASGMVGTVASASEQ
LSSSVQEISRQVDQSRSVASKAVSDAEQTNGTVMQLSVSAEKIGEVVQLI
HSIASQTNLLALNATIEAARAGESGRGFAVVASEVKALASQTAKATEEIS
AQVAAMQSSTASAVESIGGITATIGEINKITVAIATAVEQQGAATQEIAR
NIQSVAAGSSEISDHIGGVSSAAQATGDAASEVLSHARALDSQSGALQSA
VDDFLRKIRAA
>RPA3940 Universal stress protein (Usp)
MFKSILVPIDLVDTALAQPAIATAAKLADSYDGKVRLLHVLAITPVMLAE
YVPADFDDQQRQSAEAALAEIARTSGISAQRLSSSVRQGGIYHEILEEVA
AVGADLIVMSSHRPAMRSYFLGSNAGHVVRYAPCSVLVVRDCT
>RPA4817 two-component transcriptional regulator, winged helix family
MRVLVVEDDSRIASELARGLGEAGYLAEIVGDGEEAWFRGDTEDYAAIIL
DLGLPGLDGLTILKRWRDNGRLTPVLILTARGSWAERVDGIDAGADDYLP
KPFQMEELLARLRSIVRRSAGHASSVVTIGEVTLDERQMQVSVGGKPVSL
SPLEYRLASYLVLHRGRVVSQYELAENIYGQDDAHDSNAIEVLVGRVRRK
IGADLIETRRGFGYIVPDERP
>RPA3616 putative diguanylate cyclase (GGDEF) with PAS/PAC domain
MPPRPLLLRRWIGRVSTATLVVAMFVVALGACVLGLVVWKGYDSHKIALA
QSETEMRNLSHSLAEHATHTFQGADVVLDDIVSFMKWRPHPSPVFNERLR
ALADNLPQLSDVAILDADGQLTYASVKPVPALDNSDRSYFRYHRANDDHT
LLITGPIQSRTSGVWVFVVSRRLETTDGKFFGVVVATIESEYFSTFYKTF
DLGPGGSISLLHSDGRLLIQWPSLQTGRDMANMVLFQKALPRSPDGYYLT
VSPFDGLTKYLAYRRVSRYPLVVTVARTEDSVLSGWREAVRSDAVVATAM
LACVVLLAAGLAAQLRTRQEVQNLLRERDAHYRLIDTNMGDVIVLTDEVG
ILRFVSMSVETVLGLKADRLVGRLWTVLVHPDDVPFVEAVGAGLPDSPAG
LCVEFRMRCPEGRLVWLEANFAYTRNEDGPTDCVVSTLRDITRRKAMEKE
VEALNARLAELARTDGLTGLPNRRSLDGFVARVITSSPTLSVLMIDVDDF
KGFNDHFGHQGGDDALRQLGHLFGGLVASVHGFAARYGGEEFTIVLPGAD
AVAAVDFAESLQAAVRTLAIRNPASARGYLTVSIGIACGTAPCDSTVLLR
DADIALYEAKRRGRDCCVTAATAFVDDAAPLQPEQPSASADATS
>RPA4223 response regulator receiver (CheY-like protein) with unknown domain
MSRSQVVAEHLPLLRRYARALTGSQTSGDAYVGAMLEALLQDPALLDERH
GPRPGLFRLFTQIWNSVALNDDADVRTLPMPSERRLSAITPLPRQAFLLL
SLEGFSEEEVAFVLQVDVAEVRQLVETAGKEMAEEIATDVLIIEDETFIA
MDLESLIKGLGHNVIGVARTHADAIALAKTQKPGLILADIQLADGSSGLD
AVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKPFQPAMVSAVASQ
ALFFQRNSRNRKPSAVAS
>RPA1931 methyl-accepting chemotaxis receptor/sensory transducer
MKSRMFMGRQKRQELLQKAEWLDTLSLHCGIGLWDAILHEGDAMHPKARW
TWSSEFRRLCGYSSEAEFPNVVQSWSDRLHPDDVAPTFAAFTQTCQTGIG
YDVKYRLKVKDGSYRWFRATGGVVLDENRKPRRACGSLVDIDELVKAENQ
KRDSIHQLANDFEGAIGKIVRTVSSASADLESSARQLATTADTSQHLAGN
VAAASEEATSNVQSVASATDQLSSSIREISQQVQESARIAGEAVGQARNT
TDRVSELSKAATRIGDVVELINTIAGQTNLLALNATIEAARAGEAGRGFS
VVAAEVKALAEQTAKATGEIGQQISRIQSATQESVGAISEISGTIEKLSE
ISAHIASAVEEQGAATQEISRNIQQTAQGTERVSATILDVRRGAVETGTS
STQLLSSAQSLSQESGRLEDEVSRFLRTVRAS
>RPA0370 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains
MAVRGVSLRQPYPREPRGWHQEWSLRRAMRMARAAYWESYSATATDFWMS
AEFTSLYDADTPDDSVPLAPARDHDLTDSHAILQAHYAACWTEGRPFAVE
TKLIKPDGRLLDCVVHGEPEFDANGQVQRVFGIVRDATPETSALRQLAVS
EQRLADFVSTASDWCWESGPDHRLLPYPKSLDGNAALQTVASGGKARWEL
AYAPDEEGSMALHRDDMEAHRPFRDFIYTSIGNDGSRIIISTSGKPIFAD
DGTFLGYRGTASDITQLAAARTLLDQRTGALEEAHRLGRIGTWTHRLDTG
RTVWSPELYQLLGLEPDAFEPTYEGTEPYFLDDDAARLLKIQKRVLRTST
TEATDIRILHTDGTPRDLAIICKAEISNGNVIGLIGTAQDVTDRKEAERR
LEQLAYTDPLTGLANRALYKRKLADLFENPMAEHGQNALYLIDLDRFKEV
NDSLGHSTGDSLLIHVAGVLRQELGPQAFIARIGGDEFAVLTNSPNTSVE
ATTALADRLIAKLSVPVELAEGEACIGATIGIAILPEHGATAEKASRNAD
LALYMAKEAGRGRAQLFEPMYAEAVDQKLDLGRRLRHAVDSGGLNTHYQP
QIDLKTGRVIGFEALLRWSHPERGPISPAEFIPIAETTGLIVDLGHWVLR
DACKQMRGWLDAGLPARTISVNVSPAQIWNGDFEKVVATVLADTGLPPEL
LCLELTENLFVDHTKQKVSTTLAALSKLGIQLALDDFGSGYSSLGYLTRL
PFNRLKIDRSFVDGIATVPEKRKLLGGIIALSHGLGMSVVAEGAELQAEV
DLLAAFDCDFVQGYAFSKPVAADQAAVVAAEIERKPGR
>RPA2787 putative signal transduction histidine kinase with PAS/PAC domain
MVAMSSFANKSEHQKVAEAEIESFRNELGPFVVAAETTRMAMLFADAERS
NCPIIFANDSLLSLTGYDRDEVLGRSLAFMLVHDADRETLAQLAGKFGGT
SDKGVEFLCRRKDDSEFWAAVFISPVRDEAGTVIQYFASFVDLTKHKEDE
ARSKMLIDELNHRVKNVLATVQAIVWQALRTSSDPKTIQQAIESRLVALS
RSHDLLTRENWESAGLHDIIANALEPFERADGLSGRIFIAGDNVRFPPKA
ALALGIVFNELATNAVKYGALSTDNGALHIDWKTVSSPEGQRVLLQWREA
GGPVVAAPSRRGFGSRVIDRVLAHELAGEVRMDFLADGLICSCSLLVPKD
AG
>RPA3216 sensor histidine kinase with multiple PAS and a response regulator receiver domain
MQPPSSPAVSQSEARYRALFEAIDDGFCIIEFFDGPHGPLSDYRHIEANA
GYEKQTGIPNIIGRTLRDLVPDEADGWAELYRSVLVTGRPIHFEREFLAV
NRIIEVSATRIEPPELRQVSVLFRDITARKRAEAALRDSEQLARENVQRV
QLALAAGAIIGTWLWDLPSDRFTVDEAFARAFGLDPALGRDGLSLAQIVA
TVHPDDRAGLATAIEEAIKRGGPYAHQYRVRRTDGKYYWLEANGRVEHGP
DGTPLSFPGVLIDVDDRRALVAERDRAIAELRALNETLEQRVAEARAELL
RSAEQLRQSQKMEAVGQLTGGLAHDFNNLLAGISGSLELMSSRIRQGRVG
EIEKYVVAAQGAVKRAASLTHRLLAFARRQTLTPTAANVNRLVSGMIDLI
QRSVGPGIDVQHVGAAGLWSVLVDVPQLESALLNLSINARDAMPNGGKIT
IETGNRWIDRSQSRLYDIPTGQYVSLCVSDTGTGMTPDVIAKAFDPFFTT
KPIGQGTGLGLSMIYGFAQQSGGQVRIYSEVGQGTMVCIYLPRHRGEAAE
DERFPDSTEIPFAHTGETVMVVDDEPTVRMLVADVLEDLGYTALEASDSV
GGLKLLQSDARIDLLVTDVGLPGGMNGRQLADAARQIRPGLNVLFITGFA
ENALLNNGQLEPGMAVLTKPFAVDTLAARIRELIGK
>RPA4686 possible ABC transporter, periplasmic amino acid-binding protein
MPGFWDPRRRPERPDMSRLTMIRFLTEIDYPPFNFTGADGNPAGFNVDLA
RALCDEIKITCTVQMRKFETLLDALASNRGDAIIASLAVTPQTRTKLDFT
DPYYRTPARFVARKDAVMPEMRPEFLEGRKVGAVAGSAHEAYLKAMFTDA
ELHSYPNAEALRAALKRGEVDFIFGDAISLAFWINGTDSENCCAFSGAPF
LESRYFGEGVGIAVRKGNDTLRQALNWALFRVWEKGQYTDLWLRYFSVSP
F
>RPA2135 sensor histidine kinase with a response regulator receiver domain
MLTAQRDSLRLLRAILVASVVLPIALFSYASWLAYRTNEANADRQIDKTR
DIITEHALKIFESVQRSIAETAEIVRGMSDDEIRANEPALHERLKRLVGG
SEQIKSMWIFDKTGRPLVNTMQFPSPTPDLSDRDYFRIHLGKNTGLYVGR
VLQPRPPFDGAPFFSVSRRRDASDGSFAGVIQTSVLPDYFEGFYAKVGRE
DGSFASLVREDGAILARMPEIDGTDTAVKPDGIVGQAIREGHSEGRMTTV
SSLDGVERRVAFRKLPSLPVYVFAGLETSAIRATWQAQMGAYLLVGLPAT
AALIAIVLLAIRRTQKLYEEADRRHIAENALKQSQRLESLGRLTGGVAHD
FNNLLMVVGGSVQRLRRRHSDLQDIRSFDMIDSAVAKGTALTRQLLSFSR
RHNVAAKAVDLGDAVTKFADVLRQSVRSDIGIMIDPPAEPVVVMIDPNEF
EIALLNLALNARDAMPDGGRITISIRTETLKNFGPRKLTGTYAILSFADT
GVGIPDDIRERIFEPFFTTKPVDRGTGLGLSQIYGFVQQSSGAITVDSDL
GRGTRFDLFLPLSAETLGLDEPTAELAPPQSGKPKTLLLVEDHPDVASVA
ADYAGQCGFTVVPANCAEAAVEVLNRRRDIDLVFSDIVMPGMSGLELARL
IREHHPETPVVLASGYSDRSASALSEGFALLQKPYTLDEMRAALTQALQS
ASDTAPV
>RPA1682 ptwo-component transcriptional regulator, LuxR family
MNEQAAGGEVFVVDDDPAVRETLSIVLSAAGYQVICFADGESLLAVARSR
SPACILLDVHIPGRSGLDILAELHAEDYPAPIFMISGKGDIAMAVNAIKN
GALDFIEKPFRGKEIVSRVEEAIEAFSRRRDAGQGSKAPSYNFPGKEPLT
LREREVLELFSAGNTNKEAGRQLGISPRTIEYHRANIMKKLGARNATDLV
RIVMTAPK
>RPA4312 putative sensor (PAS) domain for methyl-accepting chemotaxis sensory transducer
MARPQVKPTGIECPFDEDELIVSKTDLKGHITYANDVFVRLAKFPRSEVI
GAPHSLVRHPDMPRSIFKLLWDTIQAKKEIFAYVVNMARDGDHYWVFAHV
TPTLDANRNVTGFHSNRRKPDRDQVTRIEALYRQLRDEENRHRNAKDGML
AGYALLMNMIKDRGVEYDEFIFSV
>RPA3106 putative signal transduction histidine kinase with PAS/PAC domain
MSADDVQGPPQGVDQILGSPKLAAAIESDRYKHLLDNVPVAIAVSRGCGE
GQRIVYINQAFEALTELSKADVDGRGWSCLDDFSDHDDTGRALGATIRDD
EDFLGVFRKTAPSERLLIVQAYAAVIESDDGVENYRIVALVDVGGRERAQ
IERFESQIRERDTLMRELQHRVKNNLQLITALIRLEARSAAEGETVALAR
LASRIDALTALYRVLSDETPSADAGQIDLGQYLSDIANAVIRANAAGEIN
CEVHADYCPLSVNIAMPAGLLVNEMLTNALKYAFVGRDAGRIKVICETDQ
GRVRIMVSDDGAGLPDGQSWPSPRKLGALILQTLKENARNVSFEARSIRG
QGAFFTIGFDAPSPRAAN
>RPA0941 conserved hypothetical protein
MKRGDLVTVAFSGDYGKPRPALVIQSDGFDDLASVTVLPLTSHLLDTRRT
RILVLPTKENGLRSPSSIMIEKIGSLARRKVGPVIGSLSTDDMAAVNRAL
AIFLGIV
>RPA0390 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domains
MPQVRLKKKKTARIRPPAGSAKPRRSALPAPKTLSKPRRTARPADVAEGE
RAVAAALEEARRSHARLREAIDILPQGIVFLDAEGRYILWNKRYAEIYKA
SADQFSPGARIQDTMRIGIARGDYPEAEGREEEWIAERLQRMFNPGSSHE
QVLADGRCIQIEERTTSDGGIIGLRVDITELKQREASFRLMFESNPVPMI
VCAVNDERILAVNDAAVEHYGYSPSEFASLTIRRLQAFETELPWAGNHTH
EERTARTWKHVKADGSLIDLAIYSRQLTYNGEPAVLLALMDITERKRAEM
RLAFMAHHDGLTGLPNRNSLRKRLDELLIQTRRTGEKIAVLFVGIDNFKA
VNDTLGHAVGDKLLRGVARRLRSTLREEDPLARLNSDEFAVIQTGIKRPE
DIVLLAKRLLHAIAEPYLLQGHSVVVGASIGIAVAPGDGDDSEKLLMNAD
MALSRAKKDTRGTFSFFEVGMDARAQARRKIETDLRAALQHEVLRPYYQP
LVRLADGRITGSEALVRWPHPERGMISPAEFIPVAEDTGLINAIGAQILR
SACMDAARWPDDVRVAVNLSPLQFRVGNLLSVVMDALKQSGLPPRRLELE
ITETLLLEKSSQVLATLHALRALGVRISMDDFGTGYSSLSYLRSFPFDKI
KIDQSFVRGLCDNRESQAIVRSIISLGNGLGVTITAEGVESEAELSWLRA
EGCQEAQGFLFSQARPNAEITGLLDLQQSGASAGAEFAMGSARVA
>RPA0249 hypothetical protein
MERPCLFGLMRVGLMPALVLTLGIAGASAQTAPDASKDAKDKPPVAAPAQ
AQTPAAPATSATPAAPAPATPPAASEAPAATPVPTTPPAPSATQTPAAPS
APAPVQTADPFGEESTLEPKTVVILKGKANWDNAFDSLMDAFKSLTALLD
KQGIAPNGNPMIVYTSTDDAGFTFQAQIPVPQEPKNLGKSMSIGKSPDGK
ALKFVHRGSYDNMDNTYEAITNFLDDKKLEAKDTFIEEYMTDPLKTAEDK
LVINVYVPMK
>RPA4302 methyl-accepting chemotaxis receptor/sensory transducer
MSFSFKSIRKIQVKIALVAGLCLTGASLILIGYSVLSAQSTHHYVTAEVM
KLVDQQAKESLLNRANSEASVIKAELDLGLDSARNMAHAFEVLADPNNAG
TTDGNRRLQLNAVLKNTLEQNPAFNGTYSAWEPNALDGNDVAFKGRQTMG
SDNTGRFLPYWTRSASGSIALQPLVEYDSQERHPNGLVKGAWFINPKTTG
KENILGPLPYIVQGKAVFLATMSVPIKIDGKFVGVAGADYNLNFVQKLAT
QANRSLFGGKGKVLILNDTGLIVANSANPESIGKAASSADPRWSESLAIV
KEGKGTVLDDPKWENVEIYSPISVGRTGTPWSVLISVPRSVVLASANELD
TALNDRANSAIFWQLGTGILVVVLAITVIAFAARSIARPIGDCANFADGI
AKGELDQKLDIEQADEVGVLAASLRTMQGELKSSIAQRAEDQANADRTRQ
RDMNDMADKFESAVGRIVETVSSASTELEVSAGRLTTTAERSQQLTSMVA
SASEEASSNVQSVATATEEMSASVDEISRQVQESSRIANEAVHQAQKTND
RVGELAKAATRIGDVVELINTIAGQTNLLALNATIEAARAGEAGRGFAVV
AAEVKQLAEQTAKATGEISAQISGIQSATGESVTAIKEITDTIGHISEIA
GSIASAVEQQGAATREISRNIQQASRGTNQVTGNISDVQRGASETGSASS
QVLAAAQSLAGDSNLLRREVARFLDTIRAA
>RPA4791 two-component transcriptional regulator, winged helix family
MSQNPHIIVVDDEAPAREMVGDYLKMHGFAVTLCDGGKSLRAEIATKLPD
LVVLDLNMPEEDGLSIIRDLKAKSNVPVIMLTATASPIDRVVGLELGADD
YVAKPCELRELMARIRSVLRRAAPPKPVAAEPASAAKADNAQLVRFGTKW
LDLEAQALRDDDGNEHPLTASEFGLLKVFAANPKRVLSRERLLELANARD
AEAFDRAVDLRIMRIRRKIEPDPTKPAVIRTIRGGGYLFSPASDRA
>RPA0377 conserved unknown protein
MIKDLIVNLERSKDRQQITDIALGVAELFGAHVAGCCFAYDSLPSFTMPD
FPSDVLSKMLAASEEAARAAVAQFETACKREGVSVEHHLLETAYGTSGRF
PKMARRFDLSVIMQSDAENGDNDILIEQVLFDSGRPLLIVPYIQKTPVKL
DRVICCWDGSRAATRAINDAKPFLRRAGQVELVIVRDHKVRDPNELRGIE
MANHLARYDVKVDIKTITAPDIGVSGTILSHVADTSADLLVMGGYGHSRL
REFVLGGVTREMLTSMTVPVLMSH
>RPA4639 methyl-accepting chemotaxis receptor/sensory transducer
MLAKLSIRIKIVTLVALLLVALSGLGALSVLKLSSMNTNTVEITTNWLPT
VTVLGEMRAEVLSYRMKLRDHLLETNDDKMAAIEKQIDAISGKIKDSQKR
YEALISSPEERQIYQKWVEAWGKYRALVPKLIDLSRKATNGQISVEGASL
LSNTLTPLADQMDVELQKDIDLNNKGADDASSAAAATYSSAFLIVVAILA
LTIVGGIFASILVIRDITLAIASIISPMQELGKGNLAADVPHRGESTEIG
RMADALQVFKEALVAKRDADAAAAKEAEEKIARAQRVDSATRQFEHAIGE
IVDTVSSASTELEASASTLTSTAERAQELATSVAAASEEASTNVQSVASA
TEEMTSSITEISRQVQESARIANDAVDQARRTNESVSDLSHAAARIGDVV
ELINTIAGQTNLLALNATIEAARAGEAGRGFAVVAAEVKALAEQTAKATG
EISQHITGIQTATGQSVDAIKEIGQTIGRMSEIASTIASAVEEQGAATQE
ISRNVQQAAHGTQQVSSNITDVQRGATETGSASSQVLSAAQSLSQDSNRL
KVEVTKFLETVRAA
>RPA3939 conserved unknown protein
MRRLILLRHAKTERDAPSGKDHDRRLEDRGRSDAAEIAAWLAAEHLMPDQ
VLISTATRTRQTWDVLSELFPANREPQVEYLPEMYSASSSQLLQAIHEVS
AGINQLMLIGHNPGLHELALALTCTCNEAERRKLSGSMPTAAVVVIDFPI
ADWADAAFGTGKLQHFVSPKVLREAS
>RPA1713 possible cyclic nucleotide-binding domain
MDMSLIAQNAGMASSVFATIFVLATATMRTMIPLRVFGILTNLLLIAVSI
PTHNYPTLALHAVLLPLNAWRLHQMLQLVRDVRKSVNSDLSMDWLKPFMT
ERKCATGEELFYKDERAEEMFYIVSGRFRLVESGIELPVGAIVGELGMLS
PTHTRTQTLECVEAGTVLGVSYRQVEELYVQNPEFGFYFLRLASARLFEN
IESLQARLAAVAPPPRTDAVGRTA
>RPA0777 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain
MQCVPPDDPVFEPPPDSGAKSSVAGMLRLRPILWLILSGALLIAGIAVTT
TLTVSNFKEKALRNGERELSNTALLLALHYDREIDDFLAMQNDIVTTARQ
MQQPSAEAFGGTMATLAMHQTLRSRARGANEITALKIFDAGGTLINTSDV
WPVPVLSIADQRYFLDHKSGMAQRVTVALEQNALAGGWSIVLAQRLTAAD
GEFLGVVTRAITPAHFDRFLSQVSLVGESAVSMHHSDGTLLTRHPYAEGM
IGRNFRDGPLQQQAMFDDDTTARLTSPIDGQDRLVASHALTELPIVMVVT
TTTEDALASWRTQTKLMVSVAAVSALVVTVILLLIIHQIGKHHRATQRKL
QLDKQRLDTAINNMSQGLLLFDAQARLVICNQRYMEMYGLSPDVVKPGCS
LRDVLEHRKSTGSLGGNVDKITTDLIDRLSSQRVSEIHSIHDRSIEFSSV
PVPGGGWVITHEDATERKRYDERISYLAHFDSLTDLPNRTMFRQRLENEL
QRASRGAPFALLYIDIDEFKSINDTLGHPVGDELLKQVAVRLRDCVRETD
FVARLGGDEFAIIQIGVSGADEATALVDRIYESIRLPYQCLGHQLSTDAS
IGIAIAPRDGADLDQLVKNADLAMYSAKAEGRRTFRFFEPEMDAVAKTRR
QLEFDLRQAIGDRGFEVHYQPQVDLSSGAITGCEALLRWRHPTRGMISPA
EFIPIAEDTGLINEIGAWTLATACSEAATWDADITLAVNISPVQFRQPSL
ALLVASVLGAAGLPAERLELEVTEAVLIHDDDAALSTLTQLRALGVRISL
DDFGTGYSSLSYLQRFPFDKIKIDRSFIDGIDTTEGSTAIVQAVVNIAAA
RRMTTTAEGVETARQREILSTLGCTQMQGWLFSPAVPAAAFRKLLTSHLS
TCAA
>RPA4307 methyl-accepting chemotaxis receptor/sensory transducer
MKFSNLRITPKLGLLVAGTMIGLCVAGILAGVMMQREMLNARFEQAKAIT
EMGRNLAIGLQKKVEAGELTKEQAVAQFARDAAMLTYDNGQGYLFAYTMD
GVTIATPDKKAIGTNRMNTPTGDRYLVRELRDGVATKGDVTLYYDFRRPG
TEENIRKMSYGLAIPGWDMFVGTGAYLDDVDAKLKPIFWTLGGAIFAIAI
VAGLFAVLIARGITRPLAKLGARMDSLAHGELEQPIPGIERGDEVGEMAK
TVQVFKDNALRIRDLERAEEAAKEHAEAERRAAMEQLADEFEHSVNGVVQ
SVATATSGMQQTAQSMTATATDASARAATVSSASASASNNVSTVASAAEE
LSASVTEISRQVEQSREIAGKAVDDAALTNQTVKLLATGAEKIGEVVQLI
HSIASQTNLLALNATIEAARAGESGRGFAVVASEVKALASQTAKATEEIS
AQVAAMQSSTNDAVQSIGGITATIAQMSEITMAISTAVEQQGAATREIAR
NIQSVAAGSTEISMHIGGVTEAASATGSAASQVLANARELDAQSGELRRA
VDDFLGKVRAA
>RPA1790 putative diguanylate cyclase (GGDEF)
MPSQIVTQRDVIRYTAGRVAAAAGITAIATIIFLISDLGTDWHATVEVGA
VVKASLVVALSVSTTLSGAMAYRSARLMRQLTSTRAELMRMSRTDPLTGL
LNRRGFDEAAATQLAQANFAGQPVVAMMCDLDRFKAINDHYGHNIGDRVL
AEIGDILRDFAAPRGMLIARHGGEEFAGLMVGVSDEQANDYALELCRLCA
TAVACDGRLVAVTMSFGLAAYRGGELSALMRRADLALYRAKDLGRTAWCS
STMATPCRWRPPNRQAGCEKPR
>RPA1680 putative response regulator and cylclic diguanylate phosphodiesterase (EAL)
MVDPTNHNPAIDVLVVDDDPVQGAIVSGVCTKLGYRPHFASSYHEAAARL
ATGRFDYITIDLSLGDHDGIELLRLIAETGAKPRRIIVISGCEERILNAT
VRMAHAVGMLDTISLPKPIDLALLRGALAPFQEAAASRRGVDSRLSEITA
DDLRRGLDRGEVYAAFQPKIDLSTGKVTGCEALARWDSATFGPVGPDVFI
PLAEQGGLIKTMTLRMLRDSMTFAAAFLPTEPKFVVAVNLSATLLSDTSL
PEEVERLLAEIGVPARSLMIEVTETTAMADVGRAMDVLLRLRLKGIGISM
DDFGTGYSSLSALARMPFSELKIDRSFVKDCLTDADMWKIVSSSVAIAHQ
YNMKVVAEGIEDAATWHALDALGCDIGQGFEFSRALRQDAFVEWYHGWMA
RPPATRAAVVPLQREA
>RPA2076 putative signal transduction histidine kinase
MRPMPTDDINSRIAELEADNRRLRQLLDKRDAPGELRHRLRSTVAMLRTI
IRKSASKRHSLDTYVGHLEDRLDALMRAQAIADEQGAIDFHKLLADELLH
YQARDGERVTFAGPDLHLQARAGQVLALAVHELAVNAVEHGALGGDGTID
IRWSVAGAGPAPLLTFVWKETDTAPVAEPSHHGFGTEVLTRTLEYELKAK
TDLAFEPDGLRCTIRFPLSERVDGSQAG
>RPA1640 methyl-accepting chemotaxis receptor/sensory transducer
MLANVPLRTKITALVAVLLIALSGLGLLGLLQMRTLNTSTVDIGTNWMPS
VRVLGEMRTNVALYRNTLRAHLLEATTERKLATEKQVAAFDEAVKQSLRT
YASMVATPEERKLYDSLVASWTNYTSLAPTGLEMSRKAAGELPVAANDYM
AKTMGPISAQIDEVLKKDIDLNDKGAAGATASAEATYLWAIFLMIGILVV
AIVIGITASILVIRDLSRGIASIVKPMQDFTRGDLSAEVPHRGKNTEIGA
MADALQVFKQALLDKLTADAAAARDSEDKIARGHRIDAATRQFEASVGEI
VETVSSASTELEASARTLTTTAQHAQVQATTVAAASEQASTNVQSVASAT
EEMTSSINEISRQVQESARIAVEAVDQARRTNATVGELSQAAARIGDVVE
LINTIAGQTNLLALNATIEAARAGEAGRGFAVVAAEVKALAEQTSKATGE
ISQHIGGIQAATGESVSAIREIGHTIERMSEIASTIASAVEEQGAATQEI
ARNVQQAARGTNEVSANIVDVQRGASETGSASAQVLSAAQSLSQDSSRLK
VEVANFLQSVRSA
>RPA4322 response regulator receiver (CheY-like protein)
MTDHPESSAAAAAGSAELKPRLLVIDDDQVHRTIICKIAVRAGFEPVEAG
TLDEVVELTTYNDFEGVTLDLSLGEQAGTEVLRHFADRDFRAPVIILSGA
KSEIARKAHDFGESLDLTMLEAVSKPVDLTELREQLSIIARTWRIMHHAA
LG
>RPA2969 unknown protein
MTKPDLTQAYLEWTKQKLDESAATIAKIEEAAAKIGDASSAKAQEALAQL
RTARDAFQAQVSAVQADFGASKQVTDAALSAVSAQWNEVELAFQKFLGAA
GDQAGLVKDALAARAEAQRQSFLSSLETIHTGAAAALEQGRKEMESSLRR
WTEETEKTLGPKLTQLSAAGDETWNALKAGLDETAAVYEKTWARISQAFT
KPK
>RPA0766 transcriptional regulator, Crp/Fnr family
MMEKGVLRAAATRSALFSQLPPAETSRLLDASSLRQFPAGQALFHQGDVP
EYLFQILSGLVRVTQLNSEGEQITLRIMRPGDLCCVAAFRQRSYPATATA
IKATSVLAWRTNSFVALTQQSPALADNVVCIAGDRTREMLQRATEMTGKC
IAQRIAASLLRLSAQAGVRTPAGIHIESPVTRIDLASMAGLTYFTVSRTL
SAWQKQGLVKSGRHRLTILDISRISEIAEPRIGAG
>RPA1965 putative Adenylate/Guanylate cyclase
MKFTTRLVLLVTVLTVGATLVTAALLTWTTRRAIITEAEASGEKVARLLA
RSASLAASIPTEVEGIIAEEMTAEGTLLGHFVEAAERAGMTPTEINRRLK
SITDDTVLDEIWITDEKGHAYLHSLPDVNFTFSNSPQLQPQAYAFYDLLN
GQKKVVNQDARKRDIDNQHFKYVGVGGIDKPRIIQVGRSAKFLQQLTMKI
GLPRTVENLLADGDIDAVWVFDRKLDALVGPGVYGADRRDGPNEKELGPV
RLVIADGQTRHVESRQNLSVIAPVRNDQKEIVGAALVRLPMNRVWATVQS
QAEIAAATASAIAALGILLSIGVARYQAAPLRQITRAAVALETQKFDPAL
LKPVSARRDELGQLARVFTGMAGQVAAREEYLDSMVKQRTEELETRNRSL
EGLSAALSKYLSPQVYSSIFSGHQDAEIASKRKKLTIFLSDIANFTATTD
KLESEDLTAMLNRYLAEMAQIALKHGATIDKYVGDAVLAFFGDPDSRGVK
EDAVACVMMAIEMQEKLKQLEMEWIDAGAERPFRVRIGINTGFCTVGNFG
SPDRMDYTIVGGAVNLTSRLEQNCEPGSILISHVTWSLVNDVIDAEERPA
LTVKGFSEPVRAYEVRGLKTSGSTDVIRKELPGMRLFIDTVTADRTEVKQ
TLVQVVEDLDKS
>RPA2839 response regulator receiver (CheY-like protein)
MTTPSPTGGSVFLVEDEAMIRMMVVDMLEELGFSVAAETGEINEALQLAE
ATEFDIAILDVNVNGKVISPVADLLKARNRPFIFATGYGTQGVPEDYRDR
PALQKPFQIESLKQALDATLRGAA
>RPA1144 unknown protein
MSFQRKRFRIEELTLGAAPMLAPIEFEAGPTNRDLMAELRAIRAQIVNGV
HPAPASGESGTNKEIDASLAAEAAETKALLASYKAQVEQCEKLKIELDLI
HNAIDQTKREIAVLHSKSFSGEEMAKVNGELGAVVGGTEEATQQILEAAE
AIDQAATALGKVNSADQQQALSEEIQERVISIFEACNFQDLTGQRISKVM
NTMKFIEHHIVQMMEIWGGVDEIKAHAPPVVDTRDDDAKLLNGPRALGDD
GHASQDDIDAMFN
>RPA1202 putative Adenylate/Guanylate cyclase
MHSEQIRGILDWLSDGARSEPDPAMKMKLTCEQLVAAGIPLHRVGVFVET
LHPDIYGHRFIWRADGEVEVGSTTQDVEMSEEYKRSPLKILYDYGVEVRF
RLDDPESKNFPFLDDLRAEAVTDYTALPLRFLDGTYHAASFATKQPGGFT
DSQLSALRAMMPPLSRLVEVISLRDIATNLLDTYVGNRAGARILAGQIRR
GHADHLRAAIWLSDLRGFSALSDGLPPEIMVKVLNAYFDCQVAAIASHGG
EVLKFMGDGLLAVFPIADDGADAAEVCGRMLAAANECRASIAALSFVEGS
YAIESFRFGVALHVGQVLYGNIGGGNRLDFTCIGPAVNLAARLERLAARL
GRTVVASSDFVGLCSEGWSDLGEFPMAGFSHAERVHGLTDEMPLAVEGL
>RPA2957 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL)
MARVGWNARARSLLRGPGNASVRWIVGIGVLLIAAISIVTAWMIADGRER
VLRNAGRELGNTALLLARQFDRTFDTLNADQSDTASSLEQTFPLAKALST
HTLLALKAGELGDFDLFDTSGALINSSRGWPLPNVEIGAHPNFKRWMADY
ERDEAEAEFIRDPVLGGLTLTLIKRLRGPTRATTGVLTRTIPNTWYENLA
SSIVLGEDASIAIFTSGGTLVTRWPRFTQANGQNFLDSELKPLFLQPSIT
RRVNSPFDGRERLAAARMLTKQPVFVVVSRSVNGVLSSWWRELWVMVAVA
CASALAVAVVLFQLGRQILRQETDLRKRYSIAVDNMAQGLSLFDSTGRLL
LFNQRYLDLYGLPAGALKPGMRTFEIVRQLQQAGHDPHLLESYRAFALKH
AGARSAFEVEFPDGRTILITREPIPGGGWVTTDEEITERKRSDSRIHHLA
HYDDLTGLPNRSSFRKHLGEALNLIEPGDQLALLYIDIDEFKIVNDTLGH
PVGDQLLQALADRLRNCVGPDDYVARLGGDEFAVVMADASDIREFVAKLQ
ATLRDSIDCAGQVLSPDASIGIALAPDHSCEVDDLIAKADLALYAAKAEG
RRTYRYFMPEMDVKAKARHELATELKRAVTEHDFRLHFQPLVDLNSGTIA
GCEALLRWQHPVRGFVSPAEFIPLAEDIGLIEDLGEWVLDQACRVAVGWP
ASMTVAVNVSPIQFRRATFPLKVAAALARTGLAAHRLELEITEALLLQDN
ESTLAILNQLRDLGVKIALDDFGTGYSSLSYLHRFPIDKIKIDKSFVDTL
TEEAGSATIVRAIVQIAAAGNKTTLAEGVETAAQRDLLRHLGCQQMQGYL
FSPALPEDALARLIGNTDAETQTAPRRAPASV
>RPA4523 response regulator receiver (CheY-like protein)
MEVLVVDDEPAVRTVLTLVLGKAGHKVTVCDSGAGALDWLSCSDPALALI
DLSLPKVQDKSVLAAVRAARPALPIIVISGMLPEFDAAMLKREGMTVENG
VYCLAKPFTAKQLQKLMDAALAQGGPAPG
>RPA0914 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain
MRLIRCLALLALGVMLVAAAPQAHALDAVSVRSDAPAIDLTGVLEHLHSD
NDRVQISTAPGNDGIVRRVEVRAREGGQNWVVFALANNSDDQLDRLIVAP
HYRMVGSGLLWPDLGMSRIATITPSTGDRPERQDSATADIFRVTLDPGSV
ITFVAELRTDKLPQLYLWEPEAYKDKVNSFTLYQGIVIGISGLLALVLTI
LFVVKGSIMFPAAAALAWAVLVYIGIDFGFWGKVLDMSSGAERVWRASGE
AILAATLLVFLFAYLNLSRWHVRYSHITLGWLAFLGSLVALALFDPAVAS
GIARISLVAIAFAGFALIVYLSTHGFDRAVLLIPTWFLLVVWVVASGMAV
AGTVTNDIVGPALLGGLVLIVMLIGFTVMQHAFSGGGATGGVISDVERRA
LALIGSGDLIWDWDVSADKVFTSPETEALLGLKRGALEGSAASWLEVLHP
LDQDRFRAALDSVLDQRRGRLTQDFRLRTPDGHFMWFSLKARPVVGTDGE
VTRVVGTLTDVTEIKNAEERMLHDSVHDNLTGLPNRKLFIDRLGAVSNFA
KTMPTLRPTLMVIDLDRFKQVNDSVGIAVGDSILLTLARRLSRILKPQDT
LARIAGDQFGLILLSEQDPAKITAFAETIRKTIKAPIAFNDREIFLTASI
GLALSDPQTQLSDEIIKDAELAMYHSKRIGGDRIDVYKPAMRARKSDRLT
LESELRRAIERKEITILYQPIVRLEDRSIAGFEALARWDHPKLGRMSPSE
FISIAEEIGLIVELGTFVLDQTAKQLSIWQRAMRAREPIFASVNVSSRQL
LRHDLLHDIRTVTSRSSVARGTLKLELTESLVMENPEHAAQMLQRIRELG
VGLALDDFGTGHSSLSYLQRFPFDTIKIDQSFVRTTSRGTRPVILKSIIA
LAHDLGMDVVAEGAETDSDAVELYQLGCEYAQGFAFGEPMDVDAAMKLLT
EEQRLEAAS
>RPA1767 sensor histidine kinase with a PAC motif and a response regulator receiver domain
MSAKDGEILISNVEFEPIEQPSAKTPQHDAAALRPIIRVVTPVFSDEGAR
FGVLAATIDLRRPFELLRDPVRASSKIYVVDDRGHYLFHPDAPRGGLAIG
FPSTLEQDFPALAEALANNRWTPAVIESRNGDRFGVAYQPMNAGTETPLA
LVEAIAEHDMIRGPMLAWGKSTLVGGSFAVLVAIALAVAFARSLARPLSE
MTRAVESVRGGGPLTLPRNAGGEIGVLAEAFSSTMQESREKTAALRREKE
IFESIMNAMAEAVLLVDTEGVIVYENPAAVALRTSPTGITGPTWETSVES
FLADGVTPLEVDQRPGRRAMRGEPIDRFEFVVHVLGSDKIVYVSGNARPI
READGTISGAVVVFSDVSELKETERRLHQAQKLEAIGQLTGGVAHDFNNM
LTVISGTAEILLDELTDRPDLVTIAKMIDQAAERGADLTRQLLAFARKQP
LQPRNIDVNTVVSNIKQLLRPTIGEHIAIDTRLDPTVDPALIDPSQLSSA
LLNLAVNARDAMPNGGKLLFETANVMLDDDYAEHHPEVKPGRYVMIAVSD
SGFGMAPDVLEKAFEPFFTTKSVGKGTGLGLSMVYGFVKQSNGHVQIYSE
EQHGTTIRLYLPRADSDIDALPSITPVEGGTETILLVEDDELVRNFALAQ
LRGLGYRTIAAADGAAALAEVRRGTPFDLLLTDIIMPGGMNGRELADAVA
RLRPVKVLYTSGYTENAIMHHGRLDPGVLLLSKPFRRADLARLVRAALNR
ADHQTSGDTAGTDRKSAAN
>RPA0786 putative Adenylate/Guanylate cyclase
MGNSASRGKIASCGRPSRLAAAAILNESSCVTDPTAPPDAMRVYPAGVSV
VRRSQRGRACLPASITLAELENWLLHDAAAEPEMLLTFESLMWRMTAVGL
PVHRATLHIRTLHPQLLGFAWNWRASDGLCDEVQVNQSTADTDAFRLNPL
HNLFQGGKAIRRNPQDAAAQAEFPIMRDLAAGGYTEYLALPMGGDRFRHA
VTLATMQPGGFTDEHLALFQRLLTLFGLHVGRHVATRIAINALGAYLGPV
AGAKVLSGDIKRGAGEPIRAIIWMSDLRGFTDLSDRLCGNDMIALLNAYF
EVFADAVLRNGGDVLKFIGDGLLAVFPLGDDSRVAGNAALTAAIEAQAGL
GRLNLVDPAGVNCEGWRPLRAGIALHEGEVFFGNIGAAERLDFTVIGPAV
NEASRVEALQKSTGRSILVTAAAATHIDAPLEPLGDYPLRGVTVPMTIFS
PPEQPLRQPLAAAS
>RPA3316 possible chemotaxis cheB/cheR fusion protein
MSVGKSGQETGASMVSPRRRPPSLVVGIGASAGGLAAFKTFFDNMPADTG
MAFVLVQHLDPDHKSLLVELLRPHSAMPVVEAQDHDPLAPNQVYVIPPNA
TLSLEGDVLRVATPSPAREYRRPIDTFFASLAESQEDCAVGIILSGVGSD
GSLGIKAIKEHGGFTLAQAEFDDTAMTGMPSSAAATGLVDRVASVESLPT
KLLEHQAYLTKVEEQKGADGAREDVRGSLSAITAVLRRRLKHDFSGYKQN
TLIRRIQRRMQVLQIESVTAYAEHLRKEPSEGDALFRELLIGVTQFFRDE
DAFDSLKANFLPSLFTGRDADDPIRVWVAGCATGEEAYSIAIMLQELLGS
HQHEAAVTIFATDIDPQAVAFARAARFRRIDGLSQERLQRWFVKDGDDYV
PTHVIREMCVFSEHNLVRDPPFSRIDLITCRNVLIYMENDFQHRVMQTFH
YALRPGGYLFIGPSESISRETGLFSIVDKKHRILQRRDGARASLPHFVPQ
AGAISSPQLPANRIEDQIDKSARRVMAKHSPAYFVVDRNHNIVRFSGGET
GRYLEPSEGNASLDLFANLARSLRTQVRRAVETAFSSGRAVEEENLRLEG
KPPVDLVVEPIIEVGHPPSLVVVAFRTTSQTRDLPQEAEISPANRRELEA
IQQEFRALQIQHRATSEELESQIENMKSVTEEFQSVNEELQSSNEELETA
KEEMQSVNEELQTINSELHGKNELLLQANNDLQNLLDNTQIATIFLDDDL
TVRNFTPAAREVFSLRDGDRGRPVTEITSLLSYDKLCEDVRTVQRTLGVV
ESQLDLEDESATYIMRIRPYRTVANVISGVVITFSNITEQKQQHDHLQVL
MGELQHRTNNVFAVILAIARQTVRNSASLETFEQQFGTRLLALAQANALL
VDQEWKGVSLEKLIEAQLAPFIGGDSTRLELVGPPVTMAGATIQTIGLAL
HELATNASKYGSLSVPGGKVVVSWSFDEGGTSPESFRLEWREQDGPPVKP
SDRKGFGHFVTKQMVTRSLNAKVDVDLAPEGLRWSMQMPANEARSG
>RPA4797 ABC transporter, amino acid binding protein
MFKRTFRTGLAIGLVVAAGIAAAAITYERYDTKTLKRTIRRDAVLCGVNK
GLPGFSTPDDKGNWTGFDVDFCRAVAAAIFDDPTKVQFVPLDANERFKEL
QSRKVDILSRNSTWSMSRETNYDLYFPAVAYYDGQGFMVPASRKIDSAVE
LDGSKVCVQNGTTTQLNLADYFRANNMKYQEVKSEKFDDVVKAYKDGQCD
TFTADVSQLYALRKTFEKSGDHIILPDVISKEPLAPVVRQRDDDWMMIVK
WTLYAMINAEELGITSQNIGEALKSKKPDVMRLVGTEGAFGEDLGLSKDW
AARIIRHVGNYGEVYDRNVGKLGIPRGLNQLWSNGGIQYAPPIR
>RPA4249 response regulator receiver (CheY-like protein)
MPNATAKTIVYVVDDDQGVLGSLRFLLETDGFAVRTFRSGPALLDAIDQG
PVDCIVIDYKMPGMNGIDLARGLRERKVRAPIVMITGYPDETISSRASVV
GVQHVVVKPHLEESLVWHIRAALEESGAAA
>RPA3770 conserved unknown protein
MTDAANHESYTQAAETVADSVKQAFQPVTDAFKNFQTLEVPEAARDFVKR
AAGTAKEKAADFHAGSEKVTSAIEETVANSVSEAAKITRNIQQAIYQDTE
AFFSGIDKLASAKSVNEAFQIQFDLARSQGEVLVSRAKSATEYFGKLVSD
SAKSVQDNFTKTFSKSA
>RPA0144 Sulfate transporter/antisigma-factor antagonist domain
MTFDPTEAGAALRLPSDCSISSIRSIHETIQEALGRQGPLEIDCSKVNRA
DLTSIQLLLSTAKTGEAQGRPVVLTELSEVLLNTIQRAGFTGDEIIDKHF
PQKKGGS
>RPA0136 methyl-accepting chemotaxis receptor/sensory transducer
MSSLKHPIADAVASIELVASRIETTFAQVGGQLGEGHGIFQGLNEALADL
ARELSSAQIEGASGALRDIAGRLKSLADTLPAESALLDQLRRNVAEAGAL
LKQLLKHVEMITTIARSAKIESASLEGDREGFIAFTREAYDLGRAVQSSI
EACVKDQQLLAAAVETTWGRQSEFERRYRPQLGASGGELMSAFADLGRQR
NDSVGVAELAGSSARTISDVVGRSIISLQAGDSTRQRLEHVCEGLRRAAD
PEPTLVPDMTEVQPLPRLLVNLEAVQLHDTQQEFDAGIGDIVRALSTILT
EVATLVEKGRSLHGGREGGSASFLSRVRQTLAQASSLIAMCEDGGRSIDE
ALSVVENTLEKFRDAIANLSDSVVDISLIGMNAGLRAGHLGAKGRAFVVI
AHEMKLTADQMTGAAVRLRPLLSEIAKVGDDLRKSRVSSDQTKLTSMENA
ILQTLHDVEAGNDRLGGLIGRLIEEGAKFDAVMNGAREQMTSLGSSASTL
PTVAKCLEDAVGDLGRASFGDQDEAVLDELYARYTMERERDVHRQFLLPF
GITAKQAAPAANDCDFELF
>RPA4484 putative sensor (PAS) domain for methyl-accepting chemotaxis sensory transducer
MRHVTPSGREAFFPASELIVSKTDTKGRLTYANRLFCDVAGYSEAELIGQ
PHNVIRHPDMPRAVFKLLWDAVQQGREIFAYVKNMTRNGDHYWVFAHVTP
SFDGAGRIVGYHSNRRAPDRGVLEGAIIPLYADILRTERSHRNAKDALSA
GSRALSDFVASRKASYDELMFSLKSAA
>RPA2108 response regulator receiver (CheY-like protein)
MTIGKIITVIDDDENVRIAIEGLIRSLGHTARGFASAPQFLASDTRSTTC
CLITDVQMAEMSGLDLHAHLAAEGSAPPVIYITAFPDERIEARARALGAI
GFLSKPFDAETLVHCIQRALASGPNGRI
>RPA0356 PTS system Hpr Kinase
MTEAAPRTVHASAVKVGDLAVVIRGPSGSGKSRLAWALILAGRAGQIPRA
ELIGDDRVFMEPEQGQLTVRQVPELAGLIEIRGLGLRQTASVAAATVGLV
VDLGAADASRMPETAALRTEIGGVQLPRVPVAAGYDPLPLVAAALTTTGM
AEEEA
>RPA2434 sensor histidine kinase
MTPESARKRSLAQVTLLSLSFAVLVAISLASVYWLQKAREDNAWVAHTLE
VQNQIALAQLQLRRAESAERGYVLTQQDDLIAQFEEAASDVVPRLKKLRD
FVADNTAQVPFIDQAIASANSRIERFRQVIALAQQGRIEDARQLLRDTDG
RRAMDTLTTSLTAMRQEENRLFSERTTEADRSQALATIITTTGSGLVLVL
AGLSIFLVRRSARARDEAENQLRENNLNLESAVQERTADLREANEEIQRF
AYIVSHDLRSPLVNIMGFTSELEELRSDIFRRIGTLSREVTGKQSAANAD
GDGEAELEPADRQLSEDFTEALGFIKSSIGKMDRLISAILNLTREGRRQF
QPVRIESRELIENIVSTVAHQAAEANAQIRIEPLPEIVSDRLALEQIFSN
LIDNALKYLKDGVPGDIVIRGRQKLGFVIFEIADNGRGIDPKDHQRIFDL
FRRAGTQDRPGQGIGLAHVRALVRRLGGTMSVSSALGEGSTFTITLPAKW
TANKNQEQRA
>RPA0856 methyl-accepting chemotaxis receptor/sensory transducer
MSGKFAKFRRPRLKFPQLGIRGSLFAAFTVIAGMAILISAWAGISLHQLG
RTIAELSGRDIPKLAASLQLATESESLASQAPILLDSLSAEQLRERSARM
KAAQQVAIQKLSDITTYGGDKAVVSALSETLKNIDDTIRSLGAAAKERLD
LTTQHAKLYEELRRSHDAFIAVANPAMLDAQTQMNAVLGSANLSQDDATA
TGRQIEQLGNVIAQSNLIASNLMAALSASSADDLEPVEASFKEARQVVNT
NLDGLPQNQTTANIKAAAQKLMALGDGKTGAFKLRQLELDARDYRDLLLD
ETRKLNVGLGISVKQLVDNVRNETTVGTSDAQAQITLATRVMIGLGAATL
IGSALFVWLYVGRSILRRIGGLQKSMQSLSAGDLSTAIERGSRRDEIAVM
AESLEVFRDNMIRARTLSEEQDKDRAAKAERTQRIETRIAEFEATVRSAM
EKLQSSADQMQETAHTMATTSEQSSALVTTVASAAEETSVNVQTVATGTE
QLASSIAEISRQVTTSAEIATRAVREAGETDTTMQGLADNAERISAVIDL
IQSIASQTNLLALNATIEAARAGDAGRGFAVVAAEVKDLASQTAKATEEI
RAQIAAMQGVTSSAVGAIRNIGQTITSINEVTTAITAAVEEQGAATREIA
RNIQHAAGGTSEVSSNIVGVSAAASQAGSAAAEVLNASGSLRQEAALLRE
EIDAFLTNIRAA
>RPA3814 Calcium-binding EF-hand
MLPAIGALGALSGLLNTLSSTSKSSSQTTSFTNPFASSSSSTSTSSFPTL
STSGTGSFPSSGLSQETMQALLDAQSQQSTSSSSSTASKTRDSALKDLFK
QIDADSDGSITKSEFENALGAGGTNVANADKVFGKMDANNDGKVSMDEMS
SALKSGHRHHAHGGGGANGGNGGGGGSSDPLLQALSGSSSTSVTNSDGSV
TTSVTYSDGSKVTMTSAATGSSSSSATSSYNFVEQLIQRQASQIQAASAK
SLSVSA
>RPA4512 possible response regulator receiver
MDLVRMVEGDGWRIIGPVATVQDALRLLEAELPLVAMLDVNLGKELVTPV
AERLKAQNVPFAVASAYDKPESHGGDVLAGVPNVGKPASERRLLATLKQL
TES
>RPA2074 response regulator receiver (CheY-like protein)
MISQSTALAGLRILLVEDEYFIADDMMRKFEESGAEVVGPFSRIEDALAA
VSSNQHLDAAVLDINLQGKMVYPIADELTARGVRFVFATGYDHHTIPARF
DHIVRCEKPADPETVISALFQT
>RPA1315 two-component transcriptional regulator, LuxR family
MSEKPGGSQQSLICVVDDDEDVRNSISSLLRSVGYRVKTFAGPQDFLASD
AVDDASCLILDIRLGEADGLEFQQELVAADTPIPIILISGHGDIPMTVRA
MKAGAVNFLPKPFDEATLLAGVREAVSRARQKRSEADRDHSLRMHYASLT
SREREVMGLVTAGLMNKQIAWQLSLSEITVKIHRGNMMRKMQAKSLAELV
RMADALGVRAAPAAQLNGPRREPPTSQH
>RPA2984 putative diguanylate cyclase (GGDEF)
MPGSVVRVTLSLIGPGIIGVFGVAFLAAWSYDRRRPYLALLAAACALFAL
GASSQILYWPRDTGLNAMVSGALYTCAVIAAVEGVLIRSSRAFGLWIDVA
IFAAFSLALYYFFYVDRSLLARIYVQNFGYGLLLCVAALRLAHLRHGRVV
DRILFWTLLLFGLHFFPRTVFTVGVSPPSGGPLVFADSVFWQTLQLSLAV
LGAALAMAILAAAVSDLIDDLRRERDLDHLTGLLNRRGFEEEIAAPMRRA
PEGASLILCDVDHFKSINDTFGHDVGDVVLKEIGAILRKTARKGDLVGRW
GGEEFAVFLPDASLSDATECAERLRQTIANSRIPGLDTRPVTASFGVATI
REAGDWTALYKLADSRLYLAKASGRDRTVDRGM
>RPA3598 methyl-accepting chemotaxis receptor/sensory transducer
MISRGQRSPAGDAPWRSHDFSAAQKKANRPNAKVLDMRLNSIGMKLGLAS
LTSIALSLGMAANQLTTERSINAVNARADAQQMVADHGLEANVSLRRMQL
AAAEIRLAATSAQVDSALTALHDARESIDRRINNAVAQIADGADKERLRS
IGALTTQYDGAMTEVGKLAKAGQSGAASDADKAKRDQLVSQANSVATQAL
GLMGEAVERAEKAAKATKTQAADELFSANRINFALGMVVMISLVISMVFT
FFGISRPLMRLNGALDKMAGGQLDVEIPGAARGDEIGDIAKTVVVIRENA
DHRAREEAEQKAHQDEVAAQQRKQEMQKLADAFEGAVGRIVEAVSSASTE
LEASASKMAHTAEEAEKLTAAVAGASEIATSNVQSVASATEEMASSIHEI
SRQVQDSSRIASSAVQQANKTNDRINQLATAAQRIGDVVDLINTIAGQTN
LLALNATIEAARAGEAGRGFAVVAAEVKALAEQTAKATDEISQQISGMQA
ATEESVSAIKEIGTTIGQMSEISSAIASAVEQQGSATQEISRNVQQAAQG
TMQVSANIADVERGAAETGMSSSQVLAAARSLSTDSAQLKTEVARFLSSV
RAA
>RPA1822 methyl-accepting chemotaxis receptor/sensory transducer
MPSAQSSPVPHSSAGLFSFFTNRKIGVKIAIGFAAVQVLMAVLAVLNYSS
FGKVGDAFAKFDQRVGVVDAVRDVEQDFNSFRRTVREYSLTGEDFLIAEA
TKRRTELQDHIKQSLQQIHGSSRHAAMADLSNKVDSYVGQFDSLTKLRQD
QNRLSLTVLGPVGQRIVSKLEQLQSSTMSGDGNSDQALLVAQSLKQFLLL
RLGAAKVLGIRLEKAAQASAEKALADFRTSLSTMKTALTGDAERKQLAAI
EADLAIYADGFQQSVRDVNDIDATIGSMTKVAESLAGDAAAIKQSGVAES
KQIGHQTEALIGETQNQIVFITLGAMAIGLVLAWLIGRAVSRPIVAMSGV
MKELAAGNTNVEIVGSGRLDEIGLMACTVEVFRNHSIEFDRLKAEQEEAE
RRVAAEHKAEMQRLADHFEGAVGEIIDTVTSASTELEASAGTLTTTAEHS
QMLAGSVAAASEQASANVQSVASATEEMASSITEISRQVQEAARIANEAV
EQARKTNDRIGTLAQAANRIGDVVDLINTIAGQTNLLALNATIEAARAGD
AGRGFAVVAQEVKALAEQTGKATGEISSQIGSMQSATQESVGAIREIGGT
IERMSEIASTIASAVEEQGAATQEISRNVQQAARGTHEVSSNIADVQRGA
TETGSASSQVLSAAQSLSRDSTRLKDEVDRFMETVRAA
>RPA0852 two-component transcriptional regulator, LuxR family
MSTPASTHLIIADDHPLFRDALRLAVASVVSSAKIGEVGSFEDLTAMLER
EGDVDLVLLDLKMPGISGFSGLIYLRAQYPAIPVVVVSASDDVETIRRSL
DFGASGFVPKRFGVEKLGEAILRVLDGDVWVPPDVDLSAAADPETSKLRD
RLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVE
SRTQAVIAAAKISGSQWRQEEPIAS
>RPA4483 methyl-accepting chemotaxis sensory transducer
MVCGVFEYYVAALAIQGVVMVFAGLALFRISQTRRLLGEASDVCRRIADG
DFEARILGIPDDGRTGTLLRAINDMIDDCDAFVREATAAMTAMHHNKYFR
RILPGGLHGALLHGAGAINTAAENIERRIKSFEGRTAELEVTTSAIVSAL
DQGSAEMKDTAGTLTVGASSARERLASVAAASEQAAANMQSVASATSELT
SSASGVRAEIDRSAEIVARAVSSVGEASGNVDALQQVANNIGEMVKAIQA
IASQTNLLALNATIEAARAGDAGRGFAVVAHEVKALASQTAQFTGEIEAQ
VGEVHGAAGAVSSSIGEIGTVIAEIDSITRQVAGAAGAQSQSTAEIARNI
DEAFAVVREISETIHVLAGNAEDNERAAASTMTTSAQLSSQSEQLAQQIN
GYLGQVRKELVEQRAA
>RPA1296 putative diguanylate cyclase (GGDEF) with HAMP domain
MRGLWNQIATSLKTRFLVVTVCVFGLVAVPAYVAFEFLTRQTVVALGTLF
AEKQVLFDRYRGLEALIREVSLAETVARSPAVRAWARDEADPDKTKRGLA
ELEHYRLSFHDKSYFFVVHQSGNYYFNDAKNDYDGHQLRYQVKRDNPRDG
WYFKTIAAGQPCQLNVDRDDNLAVTKVWINCVIADQGRILGVIGTGVDLT
EFIREVVALPQTGVTSMFVDHAGAIQAHRDPGMVDFHSLTKDTKTKKTIF
QQVDSPADAAELAAMMKRVSAGPAAVESRFMNIGGREVLVGVGYLDQLGW
FNVTLMDIDAIIDRRLFTPIALLLIVMMTAAVALVTILFRRVVLDRLATV
EAAARRVEDGDFDHIVVDQGSDEIGRLSRTLSGMAHAVRDHTRILEDLVD
ERTEKLRRLANIDLLTEIPNRRGFTQVFEQWLAQSPLAPRSAGLLLIDLD
DFKDVNDVFGHLAGDRLLCETARRLAPLLTERDTCARWGGDEFVVLVEDR
DADGLRELCARMVDAMNAAPIRSDDGQDIALTVSIGACRVVSGSSIDAAF
AEADAALYAAKRAGRNRFVLFDSGAGSALDAVATAPA
>RPA2109 two-component transcriptional regulator, LuxR family
MMASLPSPLIVVVDDDAGIREALEGLFRSVGHRVALFGSAQDLLTAGVPP
DANCLILDVRLPGTSGLDLQDMLSRLEVRVPIIFMTGYGDVPMTVRGMKA
GAVDFLTKPFRDQEMLDAVSAAVELDRRRREMEHKRNEIVHRFDALTPRE
KQIFEMVSAGSMNKNVAADLGLSEITVKIHRGRVMKKMGARSLADLVRMA
EVLAPRAGEAT
>RPA3018 response regulator receiver:histidine kinase
MSTIASRILLVDDAEIDYLTMQRMLQKIPGFRVTLDWVSRFDEAATAIDR
KEHDLYLVDFRLGPHSGLDLIRDARERGNIKPIIVLTGHGDPMVDQAATE
VGANDYLVKGEFDAVTLERAMRYATRQARTLATLDRRLAECRTTARKLVD
QSERRAAAEADVLKVLRQTMVDQEAERKRIARELHDNLGQMVTLVQFGLD
ALARGTPSPANLAEKVASLKHIVNDLSTSLHRVAWEVRPTALDTLGLEDA
VSQLVASWEPHCSLVFDLHLGLGERRLPPDIESALYRIVQEGITNVVRHA
HATRVGVILEFRGSDVICIIEDNGCGIPPEQADEHSSRRLGLVGMRERLA
SVDGTVELETEAGRGTALFVRVPLGRPS
>RPA3318 transcriptional regulator, Crp/Fnr family
MSDELSLAVKRLLFRGGLPISDQRALFGVAPTLRQASKGDCLIEGGAPFS
SLVILCSGMARKVRRFSDGMEQIVAVFVEGDALNAGEIVFRQSRNSVYAL
TPASYVSIPAGKLNDLITIRPAITRALWLETAVHAAIQQEWMIWLGLRAA
RPRLAHFLCELSYRLRLAGRDLNSEVEFPLTQNDLADALGMSTVHVNRSL
QVLRGQGLIELTRSRLIILDKDGLYSVAEFDPQYLEGHKIDD
>RPA0431 methyl-accepting chemotaxis receptor/sensory transducer with PAS domain
MFSFTRSAGHDHAAAMLAALNRSQAVIEFDLDGNVIDANDNFLTALGYSL
PEIKGKHHRMFVDPSEHDSTAYREFWTALRAGQYQAGEFHRIGKGGREVW
IQASYNPILDKNGKPTGVVKFAADITAAKTQSLEDAGKLAAIGRAQAVIE
FAMDGTVLTANDNFLAAMEYSLGEIKGRHHSMFVEPSVRESSDYREFWAR
LNRGEYFPGEFKRIGKGGKEVWILASYNPILDARGKPFKVVKYATDVTAQ
KLKNADFSGQIDAIRKSQAVIEFSIDGTVLDANDNFLHALGYSLGEIKGR
HHSMFIDPAERESAAYRAFWAALGRGDYQAGEYKRIGKGGREVWIQASYN
PILDLNGRPFKVVKYAADTTRQVLTRLGNERVRAMMESVAAGAEELNASV
REISEAMTKSRQTAMNAVGEVDAADSQANQLNDAAQAMSGIVELINHITG
QINLLALNATIESARAGEAGRGFAVVAAEVKNLANQAKQATDKIGTEISN
LTSVSGDVVGALGKIKNAIQNVSEYVSSTAAAVEEQSTVTSEMSSSMQRA
AAEAAAIAAG
>RPA4187 two component sigma-54-dependent transcriptional regulator, Fis family
MVERILIADDDAVQRRLVENMVQKCGYEAVSVDSGDAAVEALTAPDAPAI
DAVVLDLVMPGLDGLGVLSKIRASGLDVPVIVQTAHGGIDNVVSAMRAGA
HDFVVKPVGIERLQVSLRNALNASAMKGELQRIRHAREGRLTFSDIITRS
EAMAPVLRAAEKAAGSAIPVLIEGESGVGKELFARAIHGSSDRRSKPFVA
VNCGAIPDNLVESILFGHEKGAFTGATERHDGKFVEASGGTLFLDEVSEL
PLAAQVKLLRALQEGAVEAVGGRRPVKVDVRIISATNRRLLDRVKAGQFR
EDLFYRLHVLPLTIPPLRTRREDIPPLLRHFLMRFCAEEKRSIGGITGEA
MVRLAQLDWPGNIRQLENAVYRAVVMSDGDQLGLADFPLAIAPSVVPAED
TTGEPLVIERSEPQFVAASEVPIAPLPSVGNLSMLTADDEVRPLDEMERE
IIRFAISHYRGQMSEVARRLKIGRSTLYRKLDEIEADRAAQAEAR
>RPA1938 sensor histidine kinase, possible pleC
MLTDTWWGPRMARVQAADACAQSDSIKGLAQSIAKPAYHRLLNAEPVLRR
AVPLLIIAFLVTIFFGAAVQIIEQSKQKRGAMNRDLSALADLIAERLEHI
GVVRLDRPASIERLQNLLPGLIPTWGIAPGRHVIVTSADQRILARVPIGT
EPSVDNRFLEILGAASLTKSGQQSSISEITLPGGASALATMHVVKSLPGQ
VVIIQEDTGSLLRSDTALQVTLSATTGFVVLILGFAFHWQSTRAREGDLI
NDAVRSRIDTALNRGRCGLWDWDLSRGRIFWSQSMFTILGLESRNDLLTF
GEVNALVKGEDIDLFAIADELMAGRVDHIDHSFQMRHAHGHWIWLRMRCE
LTQEAGATEKHLIGIAVDITEQKSLAERSVEADLRLRDAIETIPEAFVLW
DAENRLVLCNSHFQRLHKLPDSAVTPGTSYETILEVGRMPQLRTRLCDNG
AVMPGARTFEAQLDDGSWLHISERRTKDGGYVAVGTDITRIKAHEQKLVD
NDLRLRATVADLKITQSKLEKQALELADLARKYADEKRRAEEANQTKSKF
LANMSHELRTPLNAIIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLL
EVINDILDMSKIEAGRMRLEMEPLDLAKTIGESVKVVAGRAEHKHLELRS
ELNDQIPIVADRRAIKQILINLLSNAVKFTPDAGRVTVRGHLAGGSIVLM
IADTGIGIPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSLVNLHGG
SMRLRSTLGAGTVVMVSLPRTCQQRPLAA
>RPA4830 Metal dependent phosphohydrolase with a response regulator receiver domain
MIFMTALARQPASNPAPRRRLLLASDRRDGSVDIAGILASVAEVETVPTA
HLPDAPARDLSGIVVDINLRSADSVQLVRRKLLGGAYQPMPRLFVLADEL
HHGSMQAWALGATDTIARPFDPRDLLQRVRSAFPDPSEDTATARAEALSD
GVTAAHKVLVKIFERLHGKPLTFQDVMQAEGPILKAIKRSSLREWLATVG
RHHDESYRLCLFATGFAVAFAQYLGMREEDQRRLTRAALLYDVGKAYVDV
SALDNLDNLKGDALRKYREHPRLGYEALVAEGSFPRETLDVVLHHHELLD
GSGYPDGLHGDQIADIVRITTIVDLFASLVAPRKNHTPMSPLQAFITMEN
MGGKIDQRLLQAFRPVAMGG
>RPA0754 putative signal transduction histidine kinase with PAS/PAC domains
MPAGSDWRTQPPSDYAQWNPAPRMPNQPKPLTTAHHQFAAIVQNSFDAIV
SKDVEGNVQSWNPAAEQIFGWTADEMIGNSIRVLIPPDRQHEEDDILQRI
RTGEMVPKFETERLHKSGRRIHVAVTVSPLRDPDGRIVGASKIAHDITET
VEIRRRLVASEHQFRSLANSIPQLAWIAESDGTVFWYNDRWFDYTGTTLE
QLRGSGWTALHHPDHLERVRSKLQHSWDTGEAWEDTFPLRGKDGEYRWFL
SRAMPLRDDSGEVWRWFGTNTDITVQRQHEQQIQMLMGEINHRAKNMLAV
VQAMVMRTADRSFAESLGARLQALSRNQDLLIKRNWSGTPIGELIESQLA
AVNDLIGTRVLIEGERELLLSPVASETIGLAIHELTTNATKYGALSNADG
TVRIACEIRHTVDGPKLDLIWHEQGGPPVGEPNRAGFGTVMIDRNPRSAL
GADVEISYPESGLRWCLNAPLDRLVATP
>RPA1557 response regulator receiver with duplicated domains
MSAPVILIADDDPAVLAALSARCRKIGFEVDTATNGLQMLLKARRKSPDL
IIVDINMPKLDGLTASFHLLEPGGLPVDVIVVTGVTCEETLERCEAMGMF
YACKCEQFWHHISRALTEIFPQMAEAIAEHTGPLIAGPDVLPIRPRVLVV
DDDEQVGQFLASRLKKLGIEVLYAPNAARALRIAAGQYPSVVVTDYHMPE
GDADFLIMRLRSSRSTAQIPVIVLSGWEIDEVTAKLLKRDILGYSGAIAI
FKKSFDVQALFDTIQQYCTGESRPDAAV
>RPA4383 conserved unknown protein
MSLRRAIWLCALPLLLPAAAGAIELPTRKAGLWELKMARPGGGGASDITI
LHCTDEATDKRMTSSLQPMANETCSKQETQKTATGYVTDSVCDIAGMNTT
SHAVVTGDFNSAYTVEVTSNTDKPLPGLPKEGHMTLQAKWLSPCKEGQKP
GDIVMPGGLKMNIVDIEKLKALLPKSK
>RPA3014 two-component transcriptional regulator, LuxR family
MVRTMDQKLTRRVHQGHLRIFIADDHPVVLSGMKMLLQADPEFEVIGEAA
DGPTALRRAIELQPDVAVFDLSMPGLYGMEVIQKYLAARPKARVVVVSVQ
EDGANLRRLLKLGVAGYILKRSATDELIRGVHAVAKGGVYLDPAIAGQAL
GRVVHAAPASLGETSQIAHLSARELDVLRLASVGHSNKVISAKLQVGPKS
VETYKARAMEKLGFTNRVELIRFALDMGWLENSGL
>RPA0320 autoinducer (acylhomoserine lactone) synthase
MQVHVIRRENRALYAGLLEKYFRIRHQIYVVERGWKELDRPDGREIDQFD
TEDAVYLLGVDNDDIVAGMRMVPTTSPTLLSDVFPQLALAGPVRRPDAYE
LSRIFVVPRKRGEHGGPRAEAVIQAAAMEYGLSIGLSAFTIVLETWWLPR
LVDQGWKAKPLGLPQDINGFSTTAVIVDVDDDAWVGICNRRSVPGPTLEW
RGLEAIRRHSLPEFQVIS
>RPA3184 putative cylclic diguanylate phosphodiesterase (EAL)
MKEEGHERRVRASLLGSGAITILVGLAWSAAFIHFDRPVLAALNGCLIVF
GIALVWLVYQRRLTAAALLAGLFLPLFIAVSCLFDNVPDGVHHGTQMHFL
AVALGGYFVFRRGGIYMKYVMPAFCLVGFVVFSNTSIGFHDPALVIPASA
AEIGVWTNTLTAMVELVFIVVIMNADLSVRRMMDVEMRKAVANGDFQLHY
QPQINEAGKVVGAEALIRWRHAKMGNVPPAEFIPLAEETGLIIPIGNWVL
RAACAQLAQWEAQPEAQHLTMAVNVSASQFRQPDFVQSVSEIVRLSGATP
SKLKLELTESMFVDNIDATVAKMSALKAIGIIWSLDDFGTGYSSLSALNS
FPLGQIKIDKTFVHGMLTNVPNMVVTEAIIELAGKLNLQVIAEGVETVEQ
LNSLREAGCLNYQGYLFSPPLDIDAFSKFLSPEPPRIEPVSRHQLELPA
>RPA4203 putative sensor (PAS) domain for methyl-accepting chemotaxis sensory transducer
MTSSVKPTGVEVFFDADDIIVSKTDLKGRITYANRVFTDICGYSEAELLG
QPHSIVRHPDMPRCVFKLLWDTLAEGREIFAYVKNMTKYGDYYWVFAHVT
PSFDANGTVIGYHSNRRVPERRVVAALEPVYAELLAQESRHRNGKDALAA
GYQHMIDFVKSKNISYDQLVFSL
>RPA1728 conserved unknown protein
MPEAAVVAVLYGGSLGPQADIARSTRPNSMDRPYARNSPSKFGDELPSNL
HIVRFSLRKTSILDNCRGASTKLLFHSPYRADMPRIVRQINVVPSKAEDA
KHRPFSDFAATPNLVLLGDPGSGKTHLFKEAATAEGARFLKARDFLNMPA
HALAGQPLFIDGLDEQRSGRSDRGIVDALVSKLWDVKPAKIRISCRVADW
LGESDIAALRPYFDQHGDAPVLQLDILSAAEQREVLAGQGVEEVVADAFL
VEAEERGLGDFLENPQNLIMLWRAVQTGSWPATRMQLFEMATGLMLQESN
QEHARSGSGSLSVAELRPVAGAVCAVRLISDVDAVSLTDQEGTADIPGYR
SVSFFAPELVQAALGRRVFDASTEAETVDYAHRTTAEFLAAEFLAQRVRA
GLPVGRVVALMGVDGHPAAELRGLHAWLAVHLPETADELIEADPYGVLTY
GDAASLTTSSCACLVRALDRLSKENPWFRSGDWQSRSIGALARPDMVGEF
RAILNNPASSFGIRSVVVDALMLGTPIPEMLPDLVAVLTRQVSPFAERAH
ALAALVRLGAAGKVALRVAFQTQLGANTNDISLRVEIIMALYGHPFGPAD
VVSLIDDCLRIQDMASSGMLWTLADMLPEGDLPAILDGITVPPESGRGFD
RRVWEVGSFFARILVRAWRATGSLDPDRALEWLRKRAAFKGGTSESRARG
LREAMRDAPERTAAIARHFFRNVPIDEHRWLSYNRFREATLFEPDIDTLL
DIAAEEMASNEAGERQVFLCEIAFALSYQAAHPHAAEVFEELWSRGVDND
ALAKAVAKATSTNLPHNYFMDRSSRDEVDAEESRERQRQDFDRDIEQIRS
GAHMGWLNHLGMIYFALYADVDRAATPRERLAAWLGEERTDAALEALMAS
LSRDDLPSYADVMKLTAQHQHYDWWYALVAGLNECWAAGLDLSNLSDDFL
QGMLAFDITNPVSRSQDGTEHWIVHPWRQALMERRPELVRDVYLAVVRLR
LSRNEQFSDGLRELLAEAAFEPYRVDVVLGLLREFPNAIPFRLDELLATA
AKLPAGHKGFLELAGQILSGAVLVDQPQRDLWLATAYVLAPDSFEREVQQ
RAVVHPDFVFDLRDKGGFGDDRQSSQPLALPVAEFIARLAGSLFPDTPHP
SDGWDGNTNAWDASDYVRSLINLISASPSEAATKALDRLNADPGLVSYRP
HILHALANQRQRRRDAEYDRPSWSQTVAALRNAAPATVADLYALLVVHLE
DLGHSIARANTDIFKQFWNLDSYARTAGPRPEEACRDNLVTLLRPSLLPL
GITVEPEGHMIADKRADISVAMPSRKILCELKRDYHAEVWTAIEGQLERF
YAHDPDAKGFGIYCVLWFGHKRPRGIPVHPKGMAAPQNPDEMEKMLSSLI
PESMRSRLAVIVIDVSGEI
>RPA0981 sensor histidine kinase with multiple PAS and a response regulator receiver domain
MTNKLSAPEQALIDRERELAEVQRIAKVGGVVVDLTAGFRNHRSPEYLAI
HGLPPEAVNETHEDWVRRLHPDDRERAERQFLDLIKGTSDRYSAEYRIIR
PNDGEVRWIAAEGRIDRDESGRAVRMVGAHIDITDRAIAREMLRESEQRF
KAIADSAPVPIWVTRLDRTRSFANRAYCDFIGLPYEDALVFDWRSIIHPD
DVAEVVRNSVAGEASLQPFVLEGRYRRADGQWRWIRSESQPRWDPAGRHI
GFIGVAHDITTAKQAEIDLRNVNETLERLIAQRTAQLHSSESQLRAILET
TNQYQGLLDLKGRLLYVNGTALAGIAAEPAQVLGALFWKTPWFEAAPEAA
SAIERAFRTARVGEIAKLDLELQLPAGTRHIDFSLRPVADTQGGVMAVLA
EGIDSTERRRNEEALRQAQKMEAVGQLTGGVAHDFNNLLTIIRSAVDFLR
RRDLPEERRRRYVDAISDTADRASKLTGQLLAFARRQPLSPVVFDVAAQI
QSIANLIRPLVGSRVEIDVDTGSGPNYAIADVGQFETALVNLAVNGRDAM
NGEGRLSIALRRVDEIPPVRSQPARPGEFVAISVTDSGSGIALTNLDVIF
EPFFTTKEVGRGTGLGLSQAFGFAKQSGGEISVQSTLGEGATFTIYLPQA
QAPEQTTAATLSRVDPAGGLGHRILVVEDNVEVGKFSTELLQDLGYTIKW
AKSADEALAALAEDEFAFDLVFSDVIMPGKNGVELATIIRERYPGLPVVL
TSGYSSVLAENAHQGFELVQKPYSVEAISRVLRRAISERRTRPTG
>RPA4226 putative signal transduction histidine kinase with Chase domain
MSCAQVDASSWWGRYRYVEYGRRSPPRTPSKSVVRLGFIIGLIAIIGVVL
SGFSASRVYEQEAAIQRIALGRAIDVHASQVQDRLTERELLGRVASGLFR
KPSVIKADMLQPLRSSIYTFKTDFVLATWVARLKPEEVPAAEAELTKAGF
PDPTVRDYDGKPLDLSSPVPLDVVMDVEPRNAETMALTGRMLDHDPVLGR
TFAQALAEGQPHVSDPVPLTGSGPVGVVLAAPVMNTDSSDIVGFVTFSYR
LATLMLTNDDLSLFSVVLKDPSREGYELVADESGEITSRVAPEGANPMIV
RTVTFGNRDWSLAYYPKIDPYDRAQKMALIIGLAGLALTLIVCGLFGYVS
YSNIRLRREIQMRIGFERRLTAVIDELNHRVKNILAVIQSIVTRTLRHGS
DLDVARELLIGRIHAMSNVVSLLSDSQWQGVMLKGLFEGRAIPHADRIEV
DGPDIAVSARAAQSLSLLFFELASHSDEGLAVVGKHPRVVANWTVTGDGK
DATFHFRWEEFNTSAATRRPDSEFGIILLDRVAPEALGGTSKRYFTDISY
VYELTAPLDTVVDVYERDRTGQITAPVRPPRKSPKQPR
>RPA1180 putative cylclic diguanylate phosphodiesterase (EAL)
MIRISTIFIAVCMVLIATSLGMVVYAVAGFNFAQASLVGLTALTLFVLYQ
AVSMRMRDRAEAGDQIADLSRGTADLARQVGEFGRRLAVVEAKLVSARSS
QQDRVQHVSDEITELGTLVQQLAASVAAHEDLLTSAAQSVVRPEAIAAPE
PATLAPAAIPPAAAPAIPAPAAVPPSVPQPETPIVAVAPAPAASTVAAPT
VATPEAAAVPALAAAPAAVTVSAGPNLAAAVASAVDGGRFDLYLQPMVSL
PQRKVRAYEVVTRLRDNADQAIPAETYLPIAETAGLMGRIDNAILLRAVQ
VVRRLLVRNKDVGLFVNIAGATLSDKAAFAQCLDFLEANRALAPSLILEF
KQSALRGLGPIETEHLAALAQRGFRFSIDHVTDLRFEPRELADRGVRFIK
VPASLLLAAHDTASADIHPVDLSDLLGRFGIDLIAERIEGERAVVDLLDY
DVRFGQGFLFAAPRPLRPETATNAAAPASNAPAQQEINLDPGKLPQSPLA
RIEPARVTGNAALVRRAAGPF
>RPA0549 ChrR, sensor protein ChrR, cytochrome cycA regulator
MTVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPHCRARAAAADALGG
EMLDALPAAAVTPELWQNVLARTQDQPETPPAILATALRPRSDIVIPEPL
RSYLGTDLAGLRWTRLAPRVQQITIDIPGCRPRARMLRFEAGTRVLEHGH
SGRELTLVLHGSLCDGAAVMRRGDVAETDEGTEHQPQAGPDGDCICLAVT
DAPLRFKSRFARLLQPWFGI
>RPA4234 aadR, anaerobic aromatic degradation regulator aadR, Crp/Fnr family
MPHLAYPTTTCEGFRCETHCAVRGLAICGELGPADHEEFERLAQHVRYGP
KEALFSEDEVADSVYSLIEGIARLYKLLPDGRRQIIGFALPGDFLGMAPG
NRYSFSADSIGGVTVCKFFRGPFLRFIENRPQMLLRMNDFATRELSLAQD
QMLLLGRRSAEEKVAAFLVGWRDRLARLEGVTKTVSLPMGRQDIADFLGL
TIETVSRTFTKLEREKLIVIVPDGVRVLDPKRFDALAAA
>RPA2560 aapJ-1, ABC transporter, periplasmic amino acid binding protein aapJ-1
MKRVSLVAAFAAAAVFSVSSADAQTLKTVKDRGMLSCGVSQGLPGFSAPD
DKGNWAGLDVDVCRAIAAAVFDDPSKVKFVPLSAKDRFTALQSGEIDVLS
RNTTWTLSRDTSLGVNFAGVSYYDGQGFMAKKSLKVNSALELNGASICVQ
TGTTNEQNVADYFKGNNMKYEVIAFANADEAVKAYESGRCDVFTSDVSQL
YAQRLKLATPADHAVLPEVISKEPLGPLVRHGDDQWFDIVKWTLFALVNA
EELGVTQKNVDEMAKSDKPELKRVFGTDGNLGEQLGLTKDWVARIVKATG
NYGESFERNVGSGSKLEIARGLNKLWNKGGIMYAPPIR
>RPA2628 aapJ-2, polar amino acid ABC transport substrate-binding protein, aapJ-2
MVLHLRWTTSIGAALAVVLALVSSAASAGPTLDRIKSRGVIKVGVGTTPG
YFAPDSNGRWQGFFVDFGRALAVTVFGDPDKVQFTSSSPQQRLPALQSGE
FDVLLSGVTVTITRAFKLGFHFGPTIFYDGQGILVRKDLGVTSASQLDGA
TIGIQSGTTGELNIADYFRKHRHKFTPVTIEDTSEFIAALDSGRVDGLTQ
DASDLAAKQTQLKKPSDYVILPERLSKEPLAPAVAGGDDRWLEIVTWTVN
ATIQAEEWGITSKNVDDFLKSDDPSIRRFLGVDPSLAESIGLDPKWAYTI
IKTVGNYGEIFDRHLKPLGWERGYNRLWTQGGLLYSPPFR
>RPA0347 aceK, putative isocitrate dehydrogenase kinase/phosphatase
MTATASHTRARPLGASEIEHATRIAEPDFDLLDALYRTDDPDDQARLLAR
VVLSAFDNYYAVSRRIPALAQAAFEARDWPVTVRLSKIRIGLYTACIDQL
VPLLKAGLPELTTDEQLWPTAEAELLAAIEGRYEADFAFAFWQSLRRKLV
SDEWRPVSYDAGSTARRTTSPAAVLKTTATTLPITAEVIAGILDEAGFRV
PWRDRDGDAALAAQAIETALEPLSPRPGEPVKIEIADSGFLRNRGACLVG
RIKLRDRGDMPMRNLPLLIALLNEKDGLVVDAVLTDSDELQYAFSSTLAN
YHATNPRYHELARLLYELMPKRPLGTQYSCIGFHHLGKVAVMSEILAEHR
KTKEKLATAPGFKGTVAIAFTMPSSAYVLKIIRDHPTDDYKFDYFDGLDE
VLRKYNLVHEIDRAGSMLDNIIYSNVKLDRAMFAPELLDELLEAGIGTVT
LDRGALVFRHLIVQIKLTPLPLYLANASAAESRAAVINLGDCIKNNAAAD
IFNKDLDGRNYGVSRIRKVYLFDYDAVEPLTSVTVSRDGAAPGEFDNGMV
FRPQEMLEGLRIDDPGLRRAFRDAHPELMQADYWEGMQQALRDGKVPKVM
NYPASRRLRR
>RPA1439 anfA, Sigma-54 dependent, Iron nitrogenase transcriptional regulator, AnfA
MTSLELTTDDAMSKGLVDEFTHCFTGECRVNVLQILFRINQVLTQNADLA
TLVSIILDGMRQQMRMQRGVMMLYDRHSDAIFIHDSFGLTEEERGRGIYA
PGEGITGKVVETGKPIIIPRVIDSPDFLDRTRAHNKGRKQDKLAFFCVPI
VLAQKVLGTICAERVYMNQRLLNQDAELLAMVASLIAPAVELYLIENVDK
VRLETENRRLKSELKQRFRPTNIIGNSKPMQEVYAMVHKVASTKATVLLL
GESGVGKELVASALHYNSPVADGPFIKANCAALPEALAESELFGHERGAF
TSAIATHKGYFEQASGGTIFLDEVGELSLPTQAKLLRVLQERTFERVGGA
KPVKVDVRIIAATNRNLAEMVAEGTFREDLFYRLNVFPITIPPLRDRGSD
VITLADHFVTTYAAEIGKPIKRISTPAINMLMSYHWPGNVRELENVIERS
VILAEEGVIHGYDLPPSLQTPTETGTGFSGTLEDRVTAVEYEMIVEALKA
SNGNVGQAATTLGLTRRMLGLRMDRHRLTYKTFRTAGLRPRN
>RPA3555 arsC3, arsenate reductase
MSDRIFNVLFLCTGNTARSIMAESILRKDGGGRFHAFSAGSQPKGFVNPF
ALKVLADGNYPTEGLRSKSWQEFAAADAPVMDFVFTVCDNAAGEACPVWP
GQPMTAHWGIDDPAAVEGSDLDKERAFVQAFRFLKNRIDAFTALPIKMLD
GVALGAKLREIGQADGASHRRPEVA
>RPA4529 arsC4, putative arsenate reductase
MMIPPSRTGLPHAVLFACGMNSVRSPMAEAMLRGIAPRTMYVRSAGVKTQ
ELDPFAVAVMAERGLDISKHKPTTFEELDDYEGLNFDLIVTLSPEAHHKA
LELTRAHAVDVEYWPTYDPTGTEGNREQKLAAYREVADSLMQRIYKRFGR
HSSGNE
>RPA0408 bipA, conserved GTPase
MTLRNIAIIAHVDHGKTTLVDKLLQQSGTYRDNQRQVERAMDSNDLERER
GITILAKCTSVVWGDTHINIVDTPGHADFGGEVERILSMVDGVIVLVDAA
EGPMPQTKFVVGKALKLGLKPIVAINKVDRSDARVTEVVNEVFDLFAALD
ATDEQLDFPILYGSGKNGWMSDKPDGDPSEGMKPLFELVLKHVHPPVVEE
GPFRLLGTILEANPYLGRIITGRIASGSVKPNQAVKVLSRDGKLVEQGRI
SKILAFRGLERVPLDIAEAGDIVAIAGLTKGTVADTFCDPAVDTPIQAQA
IDPPTVSMSFIVNNSPLAGTEGDKVTSRLIRDRLLREAEGNVALRVVESA
DKDAMEVSGRGELQLAILIENMRREGFELSVSRPRVVLTRDENGQLLEPV
EEVVIDVDEEFSGVVVQKMSERKAEMIEMRPSGGNRLRLVFYAPTRGLIG
YQGELMTDTKGTAIMNRLFHNYLPYRGEIQGRRNGVLISNDQGEAVAYAM
FKLEDRGPMMIEPGWKVYKGMIVGEHTRDNDLEINVLKGKQLTNIRTTSK
DEAVRLTPPIRMTLEKALAYIEDDELVEITPKSIRLRKRLLDPNERKRAE
KSKQAVA
>RPA3882 cckA, sensor histidine kinase with multiple PAS and a response regulator receiver domain
MVLRFRPRFRQLEPRRRVPGGQGTGSVTMTINDQQASPEPRPASPEPARR
GGSIALVLLLAGAIVAAAVAFMTLGRAGAQPYILGLLALLAMVGLFMLFA
FAAGIIGFADRAAEDPILRAIPENAFDGIAVTDAGGHVVYANSTYLALTG
AATMQDVRPVERVFIGNPDVSEAVFRLLKAAREGRRLQEEVRVAGADGTQ
GRWMRLRVRPLGTSKREARQTVWSIADITRDRERQEDVFQTLQHAIEYLD
HAPCGFFSVNPAGNLVYVNATLANWLDHDLAEIGSGGLKLSDVVSGDGAA
LLTSIVPEPGEVKTEVFDIDLKKRGGQTVPVRLYHKLAFGADGTPGPSRT
LVISRARDDRLDPQRAAEIRFMRFFDQTPMAIATVDKTGAVVRANARLAK
LAQSLDPAGAVASKSILAAASARDRAVLAGAIEQAAKGQADIAPVEVMLA
SAKERWGQFFVTAVSDETDNEAAIVHMLETTERRALENQVNQAQKMDTIG
QLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAAT
LVRQLLAFSRKQTLRPQVLDLGEALTDIDRLLKRLIGEKISLEMQHGRDL
WRTKADVSQFEQVIVNLAVNARDAMPDGGKLTIRTANVTASEASQLGHNG
MPAADYVCVEVSDTGTGIPPEIVDKIFEPFFSTKEVGKGTGLGLSTVYGI
IKQTGGFVYVDSEIGKGTTFRIYLPRHDAATEPQPEAPAVSAAAPEPAPT
APKPRADMTGQGTILLVEDEEGLRSLNARGLRSRGYEVIEASNGVEALEE
FDAHGGEVDLVVSDVVMPEMDGPTLLKAMRGRNPDLKIIFVSGYAEDAFE
KSLPENEQFAFLAKPFALSALVAKVKETMGAS
>RPA0142 cheA1, multidomain chemotaxis histidine kinase CheA1 (Hpt, CheA, & CheW domains)
MTTIDPAAVFRQEAAELFEVLEAALLDLGQNPDDRELVDSAFRALHTIKG
SGAMFGFDKVATFTHEFETAFERVRKGEIKPTQDLVSVALAAKDFIRALI
ETPDEADAIIGEAILADLSRFVSPTEAVEAPVSSPAQEPAPAPVSERRQV
GWHLRFEFDSQILRNGSNPLDLLDDLSKLGSCFAMPLTDGIPFLDELVPE
DCYLKWDVSLHSDCDKAAIDDVFMFVQDEMQLSLEPLFEGETPQPVPVLE
LPDVSILPPEPPQAAEETKPAPQAATAAPAAPTVERRSGEPRRADDRGIA
TVRVQAERLDELMDRVGELVIAQARLTQLAASGNDISIKLIAEEIERLAS
SLRDTTMGARMVPIGSLFGRFRRLVHDLSRDLGKPVEFITSGEDTELDKT
MIECLADPLVHLIRNAIDHGIEAPAARVAAGKPEQGRIELAAVHAGAQVL
VTVKDNGGGLNTARIRAKAEEQGLIAPGVTASDQEIHQFLFHPGFSTAQT
VSALSGRGVGMDVVKRTIENMRGSIDLSTVPGDGTTVTLRLPLTLAIIEG
LLIRVGSGRYIIPLSAVEECVELTAEDERSRSRNFLNVRGNLVPFLRLRQ
IFDADGEPDQHQKTIIISTGETRVGLVADQIIGNHQTVIKSLSKLHSDVT
MFSGATILGDGTAALILDVVQLVGLAQAQSEKQMSEAA
>RPA1627 cheA2, multidomain chemotaxis histidine kinase CheA2 (Hpt, CheA, CheW, & Resp. Reg. Rec. domains)
MDDLLREFLTETFESLDTVDNQLVRFEQEPNNAKILDNIFRLVHTIKGTC
GFLGLPRLEALAHAAETLMGKFRDGMPVTGEAVTLILTTIDRIKDILTQL
EATQAEPEGEDGDLIGELERLSMRSPEEIAAELGGAAPVEVAEVEAPAEA
VVAEAADANSTEGTLVAQTLERPLRPGEVSLDELERAFRETEIEMASPPL
QPAVSEAPAAVAEAAPPEPKPAKPAKPAAKPAAKKSGGEGEGAAEGGAAG
GVANQSIRVNVDTLEHLMTMVSELVLTRNQLLEISRRHEDNEFKVPLQRL
STVTAELQDGVMKTRMQPIGNAWQKLPRIVRDLAAELGKQIELEMHGADT
ELDRQVLDLIKDPLTHMVRNSADHGLEKPEDRARAGKPEQGTIRLSAYHE
GGHIVICIADNGRGLDTERIKAKALANGLVTEAELEKMTEAQIHKFIFAP
GFSTAAAVTSVSGRGVGMDVVRTNIDQIGGTIEVKSVAGEGSAITIKIPL
TLAIVSALIVEAGGDRFAIPQLAVVELVRARANSEHRIERIKDTPVLRLR
DKLLPLIHLKKLLGIDEGANSEPENGFIVVTQVGSQTFGIVVDGVFHTEE
IVVKPMSTKLRHIGMFSGNTILGDGAVIMIVDPNGIAQALGTAVSAQHDI
SDQAAASRNASAEQLTSLLVFRAGSSQPKAVPLSLVTRLEEIASDKIEMS
NGRYMVQYRDQLMPLVLMEGVEVATSGVQPILVFADEDRSMGLVVDEIVD
IVEEHLHIQVGSSREGILGSAVIKGQATEVIDVAHFLPMAFSDWLARKEM
KQSLTTRSVLLVDDSAFFRNMLGPVLKAAGYKVRVATSAVEGLSVLRSGA
QFDVILTDIEMPEMNGFEFAEAIRSDTKMSNLPVIALSSLVSPAAIERGR
QAGLTDYIAKFDRPGLIAALKEQTTMHATPEVLEQAA
>RPA1676 cheA3, multidomain chemotaxis histidine kinase CheA3 (Hpt, CheA, CheW, & Resp. Reg. Rec. domains)
MDDLLREFLTETFESLDTVDNQLVRFEQEPNNAKILDNIFRLVHTIKGTC
GFLGLPRLEALAHAAETLMGKFRDGMPVTGEAVTLILTTIDRIKDILTQL
EATQAEPEGEDGDLIGELERLSMRSPEEIAAELGGAAPVEVAEVEAPAEA
VVAEAADANSTEGTLVAQTLERPLRPGEVSLDELERAFRETEIEMASPPL
QPAVSEAPAAVAEAAPPEPKPAKPAKPAAKPAAKKSGGEGEGAAEGGAAG
GVANQSIRVNVDTLEHLMTMVSELVLTRNQLLEISRRHEDNEFKVPLQRL
STVTAELQDGVMKTRMQPIGNAWQKLPRIVRDLAAELGKQIELEMHGADT
ELDRQVLDLIKDPLTHMVRNSADHGLEKPEDRARAGKPEQGTIRLSAYHE
GGHIVICIADNGRGLDTERIKAKALANGLVTEAELEKMTEAQIHKFIFAP
GFSTAAAVTSVSGRGVGMDVVRTNIDQIGGTIEVKSVAGEGSAITIKIPL
TLAIVSALIVEAGGDRFAIPQLAVVELVRARANSEHRIERIKDTPVLRLR
DKLLPLIHLKKLLGIDEGANSEPENGFIVVTQVGSQTFGIVVDGVFHTEE
IVVKPMSTKLRHIGMFSGNTILGDGAVIMIVDPNGIAQALGTAVSAQHDI
SDQAAASRNASAEQLTSLLVFRAGSSQPKAVPLSLVTRLEEIASDKIEMS
NGRYMVQYRDQLMPLVLMEGVEVATSGVQPILVFADEDRSMGLVVDEIVD
IVEEHLHIQVGSSREGILGSAVIKGQATEVIDVAHFLPMAFSDWLARKEM
KQSLTTRSVLLVDDSAFFRNMLGPVLKAAGYKVRVATSAVEGLSVLRSGA
QFDVILTDIEMPEMNGFEFAEAIRSDTKMSNLPVIALSSLVSPAAIERGR
QAGLTDYIAKFDRPGLIAALKEQTTMHATPEVLEQAA
>RPA0137 cheB1, chemotaxis methylesterase, CheB1
MAKQKIRVLIVDDSASVRQVLGTILAEDPEIEVIGTASDPFVAAKRLQNE
LPDVILLDIEMPRMDGITFLRKIMAQHPIPVVICSSLTPEGSDLMFEALE
AGAVDIVPKPRVDTRQALMESSGRLREAIKSAARARVRPRAARKVIEQKL
TADAIIPPPVAGRSRPTTERIVCIGVSTGGTEALYDVLEVLPPNCPGILI
VQHMPQGFTAAFAKRLNAGCQINVKEAEDGDPVLPGWAYIAPGARHMLLV
RSGLRYQIAIKDGPPVSRHRPSADVLFRSAAQYAGANALGIIMTGMGDDG
ARGLLEMRKLGAYTCAQDEESCVVFGMPKEAIACGAVEKVVSLNQIPREI
MAWQQAKQPASAD
>RPA1630 cheB2, chemotaxis methylesterase, CheB2
MSVALAGSPATNSAQYEPLRVMIVDDSVVIRGLISRWVEAEPDMVVAASL
RTGLDAVNQLERVKPDVAVLDIEMPELDGISALPQLLAKKRDLVVIMAST
LTRRNAEISFKALSLGAADYIPKPETTREPQAADIFKHDLLQKIRSLGGR
VRRRAVPGVAAPAIAREPHPAPLPHPAVATPTVASQAALVKRSFGPTAPR
VLLIGSSTGGPQALMSMVADIGPVIDRFPVLITQHMPPTFTTILAEHLAR
ASRRPAHEGIEGEAIKPGNIYLAPGGKHMRVAKQGGNPVIALDDGPPVNF
CKPAVDPLFMSAIEVWQGGILAVVLTGMGSDGMRGGKDIVAAGGSVIAQD
EASSVVWGMPGAVANAGVCAAVLPLNQIGPKVVRLFAGDRS
>RPA0138 cheR1, chemotaxis methyltransferase, CheR1
MVHAKRQLSDRQFRSLAELIEDQVGIKMPNAKRLMLEGRLHKRVRALNYS
GVSEYVDNLFDKAVLDDELTHLIDVVTTNKTDFFREPQHFDFLKTVAVPE
LLKLPNRKSNDLKVWSAACSTGMEAYTTAMVLDDMVRAGARFQFRILGTD
ISTAVLRVATAAIYNREVTAPVPPQFVERYFLTSRDRSREEVRVVPELRR
LTNFTRMNLMDSSYPVDRDVDVIFCRNVLIYFDRETQRKVVEQLCSHLRP
GGYLLVGHSESMIHSALPKLRQVQPTVFKL
>RPA1631 cheR2, chemotaxis methyltransferase, CheR2
MNPLDYDFLRKLLKDRSGLDLSADKQYLVESRLLPLARRLSLGGIGELVQ
KMKGMGAESLISDVVEAMTTNETFFFRDKVPFDHLREEMLPALLQARAAR
RSLRIWCAASSTGQEPYSIAMTLKELGPAVAGWRFEIIATDLSPQVLEKS
KSGLFSQFEVQRGLPIQLLVKYFKQAGEVWELSPEIRAMVQHRQLNLLHD
FSSLGTFDIVFCRNVLIYFDQTTKVGILERIAKRLEPDGYLTLGAAETVV
GLTDAFKPHNSRRGVYLPNLKSAPSIVPAFPATTALSSLRAS
>RPA1678 cheR3, chemotaxis methyltransferase, CheR3
MTPLDYEYLQKLLKDRSGLVLSADKKYLLESRLLPLARKAGVPGITDLVQ
KMKAGSDSLINDVVEAMTTNETFFFRDKTPFDHFKDSVIPELIKARAGRK
SLRIWCAASSTGQEPYSLAMLLKEKASELAGWRIEIVATDLSPEVLEKSK
AGLYTQFEVQRGLPIQLLVKYFKQVGTMWQLNADVRSMVQYRLFNLLQDF
TALGKFDVIFCRNVLIYFDQATKSDIFNRLMKVNEPDGYLFLGAAETVVG
LTDSYRICPKRRGVYLPNSSAASTAPGLALGGLKTSALTGR
>RPA0141 cheW1-1, chemotaxis signal transduction/oligomerization protein CheW1-1
MSSDRVQGATDGDADAMQVVMIGLGDEKFAIDAGLVREIIDPIPATKVAG
AKAFVPGVINVRGNVIPFADLRIRFGMPVQTHTADSRIVVLEVRLDNEAV
LVGVSADRVYEVTEISRTDVQQTPRVGMHWKPEYIRFITKWRDEFVVVPN
MERILN
>RPA0140 cheW1-3, chemotaxis signal transduction/oligomerization protein CheW1-2
MAETAQYLTLGLAGETFGMAIRNVREILDMRPISRLPHAPEFMLGMIDVR
GTGYPILDLRLKLDLPAVPPTEATRIIILDVPVAGRVVGVGFVADCVYEV
TDIEESSLEQVPDVGGKWKSDYIAGIGRKGDRFVIIFDLARLMAGTDVSA
GAAETPSNDLAA
>RPA1628 cheW2, chemotaxis signal transduction/oligomerization protein CheW2
MSETRKDTPAMSRTIDAISGNTTQFATAMIGGQLFGLPISRVQDVFMPER
LTRVPLAPDDVAGVLNLRGRIVTAIDMRARLGLPKNQDGKPPMAMGVDLR
GESYGLLIDSIGEVLTLPDEGRETNPVNLDPRMASFANGVHRLDGQLMVV
LDVDKVLEIATQRMAA
>RPA1677 cheW3, chemotaxis signal transduction/oligomerization protein CheW3
MSETRKDTPAMSRTIDAISGNTTQFATAMIGGQLFGLPISRVQDVFMPER
LTRVPLAPDDVAGVLNLRGRIVTAIDMRARLGLPKNQDGKPPMAMGVDLR
GESYGLLIDSIGEVLTLPDEGRETNPVNLDPRMASFANGVHRLDGQLMVV
LDVDKVLEIATQRMAA
>RPA0143 cheY1, response regulator receiver, CheY1
MATILTVDDSPSIRQMIKVTLEPAGHSVVEAGDGAQGLSKAQATKVDLVI
TDLNMPVMNGLELIKALRKQPNLVGLPIVFLTTESNDAVKQEAKSCGATG
WITKPFKPEQLLSVVSKLVRS
>RPA1629 cheY2, chemotaxis response regulator, CheY2
MKTCLVVDDSSVIRKVARRILEGLDFEIVEAEDGEKALEACKHGLPDAVL
LDWNMPVMDGYEFLRNLRRMPGGDAPKVVFCTTENDVAHIARALHAGANE
YIMKPFDKDIVTAKFQEVGLI
>RPA1674 cheY3, response regulator receiver, CheY3
MRREQRTEAEQNGIHADKLLGLLDLLVIDDDATQRMLIAGAAEKAGYAVT
HAASCAEGIGLIRVKHFDCITLDLKLEDGDGADVMRAMAAAKYEGPMIVI
SGMSSPHRRASRDLARSLGMELLQSFPKPIDLAALRISLANLRSTVAGLP
IVHSWGEVCGPRFERNG
>RPA0358 chvI, two-component transcriptional regulator ChvI, winged helix family
MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTTPPDLAI
LDIKMPRMDGMETLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIR
KPFSQRLLVERVKAVLRRSAPKDPAAAPKENDAKALDRGPLRMDPERHTC
TWKNEPVTLTVTEFLILQALATRPGVVKSRNALMDAAYDDQVYVDDRTID
SHIKRLRKKFKAVDDEFEMIETLYGVGYRFKEI
>RPA1632 ctrA, two-component cell cycle transcriptional regulator ctrA, winged helix family
MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILL
DLNLPDMSGYDVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMT
KPFHKDELVARIHAIVRRSKGHAQSVIQTGDLVVNLDTKTVEVGGQRVHL
TGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKK
LANASDGRNFIETVWGRGYVLREPSEDDVRIPA
>RPA3907 dksA, DnaK suppressor protein DksA
MDHGLPLEKLKDYRPSEKEPFMNERQREYFRAKLLARKDEILREAKLTLQ
ALQEENVNHPDLADRASSETDRAIELRARDRQRKLIAKIDAALQRIEDNT
YGYCEETGEPISLKRLEARPIATLSVEAQERHEKREKVYRDE
>RPA0357 exoS, chvG, two component sensor histidine kinase
MRDETPVHGRRWPRPLDWVRRTGQFFFTLSFSSLTRRILSLNLAGLMALS
ASILYLSQFRAGLIDARAQSLLVQAEIIAGAIAASATVETNTITIDPDRL
LDLKPGESYGPPDEYAVLDFPINPERVAPVLRRLISPTKTRARIYDRDGV
LILDSRSLYGRGDVMRFELPPPTAEKPGIVERAMIAIRTWFNRGDLPLYR
ELGPENGNGYQEVAQSLKGQKSSMVRINDRGEVIVSVSVPVQRFRAIYGS
LMLSTQGDDIDQMVTAERLAILKVFGVAAVVMFVLSVLLASTIAGPVRRL
ADAAERVRRRIRARVEIPDFTRRRDEIGHLSGALRDMTDSLYNRIEAIER
FAADVSHELKNPLTSLRSAVETLPLAKTDNSRARLLSVIEHDVKRLDRLI
SDISDASRLDAELQRQDAAQVDLRRLLTTLTLVANETRLGHNALVEVKFD
GPAADQFPVPGHDSRLGQVISNLLSNAQSFSREGGKVRILCRRRKAEIEI
IVEDEGPGIRDDALEKIFERFYTDRPHQGFGQNSGLGLSISKQIVEAHGG
KIWAENRVGPRGEDGEPTIAGARFIVRLPAT
>RPA1348 fecR3, probable FecR, iron siderophore sensor protein
MPEFDAVQRQALAWVIRLHSGEATSDDAAALALWRKRSAEHEAAFREAVH
LWRTFGAATRELIGSEHAAAISLASPRAAVSRRLLLGGALAAAASLGGVY
AAVHPPLGLWPSLEELAADYRTGKGERRKIEVAGDIGLTLNTQTSLSLRS
TSAAPRIELISGEAALDVARDNAPVVVDAGGGRIAALRARLNIRCIDGEV
QVACFAGDVEVAWKDRKVQLTAAQQSTYSDASGLVPASPFDLEQEQAWQR
GLLLVHDWPVARLVSEINRYRPGRIVIMDSQLGRRMISGTFNLDHLDDFI
AQARGLFGATARTLPGGIVLLS
>RPA2381 fecR4, probable FecR, iron siderophore sensor protein
MRVSKDGVEMNTASDNDDRQRALHEATEWFVRLNNPLASDETRRAYQIWL
VADVAHPEAMQAVSDLWGALDQPAAQLAASGWHRDTPAPVPTPPHRRPAR
HGARLAAASAVLALVAAIFVWRDPGIIDRAFADAATRPGERRDVRLADGS
LAMLDGDTALSSDMAGGRRVVTLLRGRAWFDVVADSARPFTVHAGQVDVQ
VRGTAFEVDREAAAVTVEHGRVAVSGPQIADLQVDLTDWQRVAFQNGSLS
TPTAIEPDQAFAWRRGLIIVDRAPLSQVVKELDKMAPGHVLIVDRQLERT
TLSGTFRADDQESVLEALRATLGVRTLSLPGVATLIYR
>RPA1915 feuP, two-component transcriptional regulator FeuP, winged helix family
MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVL
DIGLPKMDGISVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVA
KPFHLEEVLARIRALLRRSAGHAQSELTCGPVVLDTRTGRVSVSGNPVKL
TSHEYRLLAYLMHHSGRVVSRTELVEHLYDQDFDRDSNTIEVFVGRIRKK
LGVDIIQTVRGLGYLLSPPAADAH
>RPA1916 feuQ, two-component sensor histidine kinase, FeuQ
MTAKPSRRGSSLATRLFLSATAWVVVILAITGIALSSVYRGASERAFDRR
LNLYLRTIIAEVATPDSSQEAFQSIGEPLFDLPLSGWYWQVVRTDGEKPE
TRASRSLWDRKLPRLEDQGIELGPSGVRHGYVDGPEGQTLRMVERPVDLG
LDGKFIVTVAGDATEIFEETRTFDYYLAGTFLALSIGLVLTTIFQVRFGL
APLKRISESIADVRSGRAERLEGQFPVEIATLARETNALIEANREIVERA
RTHVGNLAHAIKTPLSVLVNEASARPGDPLAAKVMEQAELMRSQVTHHLE
RARIAARLTVIGTITEVEPVIEALRRTMEKIHRDRAIQVRAEVAAGLKFR
GERQDLEEMVGNLVDNACKWAAGRVFIAVTGEKSDEPGGPPKLRIVVDDD
GIGLSAEQRALVARRGKRLDESKPGSGLGLAIVVDLAALYGGELKLDNAP
IGGLRAELWLPAA
>RPA4248 fixJ, two-component nitrogen fixation transcriptional regulator fixJ, LuxR family
MPKGTVHVIDDDLAMRESIEFLLSSAGYEVKLYESAQTFLDLPDVEFGCI
LSDVRMPGIDGLDLLKRQKAAGSKLPVLIMTGHGDVPLAVEAMKLGASDF
IEKPFDDDRLIGLIELALKQAQEGAKSEAVTQDIATRIQSLSPRERQVMD
GLIAGMSNKVIAREFDISPRTIEVYRANVMTKMQATSLSELVRMAMRGGV
IKD
>RPA4250 fixK2, nitrogen fixation transcriptional regulator fixK2, Crp/Fnr family
MLNQSLRTPATTHAPIDPSSCSPAEQFFATTGHAGLIASEFTYKKEEEIY
GEDEPSEYVYQVVSGAVRSYKLLSDGRRQIGAFYLPGDVFGLESGATHRL
TAEAIVDTTVRLIKRRSLEQAAATDVNIARGLWSMTAGELRHAEDHMLLL
GRKNAMERVANFLLEMDRRLAVAGMMALPMCRRDIGDYLGLTLETVSRAL
SQLQSKGILGFSGARQIELRNRAQLRNLDA
>RPA4247 fixL, two component low oxygen sensor histidine kinase with PAS domains, fixL
MTEPAPPSTELLARDRRLQQGIDGYGVGTWELNLATQELACSATARKLLG
VPADASLTYDTFISLVDPDDREQIALALQQSIEHGDKIDVMYRVAEKDRP
SHWLRARGGVVHEDGASYLCGIVLDIDQQKVLEQELRLQQGQLRSILDTV
PDAMILIDGRGIMRFFSRAAERMFGMSEREAIGQNISVLMPRPDATRHDN
YIDRYNNTGERHIIGIGRIVTGRRKDGSTFPIHLSIGEMESGGERYFTGF
IRDLTEYQQTQARLHELQAELVHVSRLTAMGEMASALAHELNQPLSAISN
YMKGSRRLLAGSTDPNTVKIESAMERAAEQALRAGQIIRRLRDFVARGES
EKRVESLAKLIEEAGALGLTGAREQGVVLRFNLDPAHDLVLVDRVQIQQV
LVNLFRNALEAMANSDKKELSAGNARVADDMVEVTVSDTGSGLPEQVKAK
LFQTFFTTKETGMGVGLSISRSIIEAHGGRMWAETNSAGGATFRFTLPLA
PVGDLTDA
>RPA1268 flbD, two-component flagellar transcriptional activator FlbD, Fis-type
MRLLIVGTLKGQLTTATKIAIDNGASVTHAADNEQAMRVLRGGKGADLLL
ADVALDIRDLVMRLEAEHIHVPIVACGIASDARAAVAAIHAGAKEYIPLP
PDPELIAAVLAAVANDSRELVYRDEAMAKVVKLAQQIAGSEASVMITGES
GTGKEVLARYVHSRSNRAKKPFISINCAAIPEHLLESELFGHEKGAFTGA
VARRIGKFEEASGGTLLLDEISEMDVRLQSKLLRAIQERVIDRVGGKSPV
PVDIRILATSNRNLAEAVREGTFREDLLFRLNVVNLKIPPLRERPADILE
LAQHFAKKYADANGVPLRPLSAEARRVLTTNRWPGNVRELENTIHRAVLM
AQGDEIGPEAIITPDGDRLDQTKTPPAVAHATFAAEQVTRALVGRTVADV
ERDLILETLKHCLGNRTHAANILGISIRTLRNKLNEYADGGLPIPPAGGG
EPRAFVSMG
>RPA1933 glnE, putative glutamate-ammonia-ligase adenylyltransferase
MIFSAITADLDNTALAARFGAGPRLYDPVLAAERWAGWLADLAPEQADAI
AALGNAFPDLQIALQSIAEASPYLFDLIRGDPVRLLRVLRGAPEQRLAKL
LEDAETFVAAASAEDEVMAALRRLKAEAALLIALCDIGGIWPVMQVTQAL
TDLAGRSVQMALRFLLRQEAGRGRIVPPNPDCPEQGSGLIVLAMGKMGAG
ELNYSSDIDLIVFYELDAPTLAPDIEPQPFFVRVTQGLSRILQQRRGDGY
VFRVDLRLRPDPASTPVALSTVSALDYYEREGRTWERAAMIKARPCAGDL
VAGDALLSEIAPFVWRKHLDFAALSDVHDMKRQMQTYRGQTEIAVEGHNV
KVGRGGIREIEFFAQTQQLIAGGRHPELRVRPTLEALEILAARNWITLQA
RDELTEAYLFLRKVEHRVQMIADEQTHALPDTVEAIEQFSRFLGYDSRDS
FARDLLGYLERVQGHYAKLFEGDPTGTAKLPPVDYGAGPEDTRLLDHLLS
LGYKKPLMIATTLQQWMTGGYRVLKVETTQRAFREFVPALIEELARAEQP
DDAVNAFDRLLQALHRGGRLISLLSQNRELLTLVALVLGAAPRLGDMLAR
QPQILDGLIDPRFFGAMPDQAELSARLAVTLADAGSYEEFLDRLRLFGQE
SLFLIGTRILSGTVPTQQAAVAFADVAEGIVGTVHGLVSEQFASTYGRVK
GQQTAILAMGKLGSREMTASSDLDLILIYDFDDDQPDSDGERSLHGAQYF
ARFTQRLISAFTTRTNYGVLYDVDMRLRPSGRAGPVASRLDAFAAYQEQE
AWTWEHLALTRARVISAPPEFRSRIEQVIRAVLTRQRDAAIIANDVAEMR
RAIAQEKGEDDVWDLKYAAGGMVDIDFIAQYLQLVHAHEAPDILHVNTLS
ALDNATRLGLLAQADAEVLRPAARLYQNLTQILRLCVSEKFNPDTAGDDL
LRVMVRAGDAPDFSSLQARVKETQSDVRAIFSRLIGGEDA
>RPA0673 hbaR, Hydroxybenzoate anaerobic degradation regulatory protein HbaR, Crp/Fnr family
MASKLTGGDLQIITRIAVFRGLKAETVAHMIAPATAISVRARESIARQDE
PATAFFIVVGGWVKLFRSNLAGDEAVIEIMSRGGSFAEAAALTGHRYLAN
AEAVTDARVARIPADHLVRCIRANPDISVPMIASICQHMHHLVQRVEQLK
AQSGVQRLAEFLASLAITEQGSCALVLPYDKALIAGELGLTPESLSRAFA
KLRSIGVTVDASQVAVRDVARLRKLATDGRSAVRGKLQAVR
>RPA0979 hoxA, two component sigma-54-dependent hydrogenase transcriptional regulator hoxA, Fis family
MSGQATVLVVDDEIRSLESLKRVLCDEFEVICARDAGEARRVLESEIVHA
ILCDQRMQYETGVDFLKDVRKTWPDPVRMIISGYSDSEDIIAGINEAGIY
QYIAKPWHPDRLLDIVRGAVQLFMLQKETETAGIDIKLTPERAQRVVTEK
RGAARKLYEFDRIVHAPDSPLSEVIELGKRAAEFDISVLITGESGTGKEL
LARAIHYGSARSGKAFVVENCGALPDELLESELFGCKKGAFTGAYQDRIG
LFEVADGGTIFLDEIGETSPAFQVKLLRVLQESEIRPLGAQRVRKVDVRV
VAATNRDLEAEVRAGRFRRDLYYRLAAFPLHMPALRERPMDVPLIAAKVL
ADVAKSYGRNVAGFATGALNRMRHYDWPGNVRELQNEIQRMVVLATEDRL
QEGDLSPRVRQGGEPIQLKPVRNGCATLKTNIEALERHMISEALDRHGGN
ISRVAGELGLSRVGLRNKLGRYDLRKGLADEV
>RPA0009 kaiC, circadian clock protein
MADGISKSLTGIEGFDDLTLGGLPSGRPSLVCGSAGCGKTLFASTFLING
ARLYDEPGVFVTFEERPVDIVDNVASLGFDLQGLIAQERVLIEHIAIDPT
EVAEVGDYDLEALFLRLEFAVDQIGAKRIVLDTIESLFSAFQNPAVLRAE
IRRLFDWLKQKGLTAVITGERGDGTLTRQGLEEYVSDCVILLDHRVDNQI
STRRLRIVKYRGTAHGTNEYPFLIDEEGFSVLPVSSLGLSHKVHEERISS
GVPDLDAMLSGGGFYRGTSVLITGVAGSGKSSLACMMVDAACRRGEKALY
LSFEESEAQTVRNMKSVGTDLGRWLSTGQLRYIGARPTFYSLEMHLAVML
REVARFKPDLVVLDPISAFTESGQIGEVQSMLLRIVDYLKSNGITGAFTH
LAHGAQTETDAGLSSLMDAWILLLNREAHGEFNRELYLLKARGIAHSNQV
REFVMSDDGIHLLPPYLGEGGALTGSARRAEEAKERRAESERRTEVARLQ
DQIEQRRRRALAQIEALKADLAVDEAELQRLTQAEASFRAQSERDVTEMA
RRRGFIGSADDTD
>RPA3001 kdpD, two component osmosensitive K+channel and sensor histidine kinase, KdpD
MPDPRVEPPSRPSPDALLEQARRQEPGTGRLKVFLGAAPGVGKTYAMLQS
AHARAKAGVDVVIGYAETHGRAETEALLAGLETVPRRRIPYKGQVLEEMD
LDAVLARRPQLAIVDELAHSNAPGSRHPKRYLDVLELLANGIDVYTAVNI
QHIESLNDVVAQITTVRVRETVPDSAFERADAIELVDLTPDDLIQRLKEG
KVYVPKQAERALEHYFSPGNLTALRELALRRTAERVDEQLLSHMQANAIP
GPWAAGERVLVCVSHDQRSQGLVRYTKRLADRLRAPWTAINIETRRSLSL
TEQQRDRLADTLRLAEALGGEALAIPGGDRSLAHDILAFARANNITQIVV
GKAPRSFWYEALRGSTVHELVRGSGNISIHVMTGTAVSIEESQTGSLRPA
EGTEPFNPWPYPMALVLVGIGLGVAKLIEPFFSIENVDLVFLTAVVGVAV
RYGLGPSLLASVVASLCYNFFFLPPVYTFTITDPTNIVAFFFFMLIAILV
SNLAGRVRAQATAAAQRVRTTESLYAFSRKLAGTAALDDVLWATAYQIAL
MLKVRVVLLLPEQGRIAVKAGYPPEDQLDPADLAAANWAWENDRVAGRGS
DTLPGAKRLFLPMRTGRGPIGVIGIDDDRAGALLTPDQRRLLDALTDQGA
LAIERVHLVEDMDRVKRDAESDRLRQALLTSISHDLKTPLAAVLGAATTM
RDLASHLSDAQRTELIGTIVEESERLNRFIANLLDMTKLESGAVVPNSAA
HDLGELVGATLRRATSILAQHTVKLDLGHDLPLIEVDPVLFEQALFNLLD
NAAKYAPAGSAIQLRAAQSGGQVELQVRDEGEGIPPAELETVFDKFYRVR
KGDHIRPGTGLGLAIARGFIEAMGGRLSAGNRSDRSGAAMTIRLPIASRG
DALISAA
>RPA3000 kdpE, two-component osmotic transcriptional regulator kdpE, winged helix family
MPIKVLIIDDEPPIRKLLRMGLGSQGYEVIEASNGKLALQAMANTPPDLV
VLDLGLPDLPGHELLRQIRARSESVPIVVLSSRGDEAGKVEALDLGADDY
VTKPFGMDELLARLRAALRHQLQVQGERPVFRVGDLSVDLVRRIVKLADK
DVKLSPKEYDLLRVLVQHAGKVLTHKFLLHELWDELTDAQYLRVYVRQLR
QKIEPDPERPQYLLTETGIGYRLKAPN
>RPA2903 lexA, SOS response transcriptional repressor, lexA
MSVHDLFSRFGDDHALARARRPNRNTPRTGSLSPTGDSPMLTRKQFELLK
FINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNRA
RAIEVIKLPDTGGMPGNSRRGFTPSVIEGNLGKVRPPSPTPAEDDHDRGS
VAVPVMGRIAAGTPIEALQSRSHTISVPADMLGSGEHYALEVRGDSMVEA
GILDGDMALIQKNDVADTGDIVVALIDEEEATLKRFRRRGASIALEPANA
AYEVRILPPNRVRIQGKLIGLYRKY
>RPA3706 nasT, putative two-component response regulator:antitermination factor NasT
MDHSLNIVIVDENPVRAAILTEGLREAGLTEITHLEGTTNLLARIYQIDP
DVILIDLENPSRDMLEQMFQVSRIVKRPIAMFVDQSDTASIQASVDAGVS
AYIVDGLKKERMKHILDLCISRFNAFAKLETELSNARSALEDRKVIDRAK
GILMKAKGLTEEQAYVLLRTTAMNEKKKIAEIAQSVITASEMLK
>RPA4632 nifA, Mo/Fe nitrogenase specific transcriptional regulator, NifA
MAQREIRLVDNEYPSPSMTHPPIPLSDIALTGIFEISKILTSPARLEITL
ANVVNLLQSFLQMRNGVVSLLADDGVPDITVGVGWNEGSDNRYRARLPQK
AIDQIVATAVPLVADNVSAHPMFTAADAMALGATDEIRVSFIGVPIRIDS
RVVGTLSIDRVRDGRSHFRMDADVRFLTMVANLIGQTVKLHRVVARDRER
LMAESHRLQKELSELKPERERKRVKVDGIVGESPAIRKLLAKVSIIAKSQ
SPVLLRGESGTGKELIAKAIHELSARANGPFIKINCAALPESVLESELFG
HEKGAFTGAIASRKGRFELADKGTLFLDEIGEISASFQAKLLRVLQEQEF
ERVGGNQTIKVNVRIVAATNRNLEEAVARKEFRADLYYRINVVPMILPPL
RDRPSDIPLLASEFLKNFNKENGRELAFESHALDLLKACSFPGNVRELEN
CVRRTATLAMGPEIRDSDFACHQDECLSAILWKGHAEPAPERPRPEIPLQ
VLPRKAPVEIVHPREPVASADDFAPAPVRSEMPSDESNMSERERLINAME
RAGWVQAKAARILGLTPRQIGYALKKHNIELKHF
>RPA4143 nnrR, putative nitric oxide responsive transcriptional regulator NnrR, Crp/Fnr family
MATIDTSMVAKLPLFAGLSRAELDAVLKEAQSIRVPKNGHVFEQGEDAHS
FFVLLHGHVRASKVTPAGEQIVVRYVAPGETLGVAMAIGLNRYPATATAV
DDSIVLAWPTAAWPRLVEQYPALATNTLRTVGGRLQETHSRVVEMSTQQV
EQRVAHALLRLAKQSGRKVENGVQIDFPISRQDIAQMTGTTLHTVSRLLS
GWEQKGLIESGRQKIVLREPHQLVVLADQAPDDKTS
>RPA2592 ntrB, nitrogen regulatory signal transduction histidine kinase NtrB
MNAIVEPRRAQPTDSDAILNALPNPVLLVGPDGKIVDANMAAESFFEIST
QLLRRQSLTDLVPFGSPLLALIEQVRVGHSPVNEYKVDLGTPRIGADRQV
DLHVAPLNERPGHIVVMLQERTIADKMDRQLTHRSAARSVIALAAMLAHE
IKNPLSGIRGAAQLLEQQASAEDRMLTRLICDEADRIVTLVDRMEVFGDD
RPVARGPVNIHSVLDHVKRLAQSGFARNIKFIEDYDPSLPPVLANQDQLI
QVFLNLVKNAAEAVVDLGSDGEIQLTTAFRPGVRLSVPGKKTRVSLPLEF
CVRDNGPGVPEDLLPNLFDPFVTTKPSGSGLGLALVAKIVGDHGGIIECE
SQPRKTTFRVLMPMFNTAKALQSPNGEDAPASSDASQTAR
>RPA2593 ntrC, nitrogen assimilation regulatory protein ntrC Response regulator
MPAGSILVADDDTAIRTVLNQALSRAGYEVRLTGNAATLWRWVSQGEGDL
VITDVVMPDENAFDLLPRIKKLRPNLPVIVMSAQNTFMTAIRASEKGAYE
YLPKPFDLKELIAIVGRALAEPKERISSANDEGEFDSIPLVGRSPAMQEI
YRVLARLMQTDLTVMITGESGTGKELVSRALHDYGKRRNGPFVAVNMAAI
PRDLIESELFGHERGAFTGANTRASGRFEQAEGGTLFLDEIGDMPMEAQT
RLLRVLQQGEYTTVGGRTPIKTDVRIVAASNKDLRVLIQQGLFREDLFFR
LNVVPLRLPPLREHIEDLPDLVRHFFALAEKDGLPAKKLDAAALERMKQH
RWPGNVRELENLARRLAALYPQEVITASVIDGELAPPPVVAGGSAPHTVD
NLGGAVEMYLSSHFSGFPNGVPPPGLYHRVLREIEVPLLTAALAATRGNQ
IRAADLLGLNRNTLRKKIRDLDIQVYRTGG
>RPA2595 ntrX, nitrogen assimilation regulatory protein ntrX-Response regulator
MANDILIVDDEADIRDLVAGILEDEGFSTRTARDSDSALAEIANRRPNLI
FLDIWLQGSKLDGLQLLEQIKKDHTDVPVVMISGHGNIETAVAAIKRGAY
DFIEKPFKSDRLILVATRALETSRLKREVRELKQLAPSASTLVGRSACIN
QLRQTIERAAKANSRILIVGPSGAGKELAARTLHNSSSRADGPFVVINAA
AITPEKMEIELFGVEANGEHSRKAGALEEAHGGTLFIDEIADMPRETQNK
ILRVLVEQTFQRCGGTTKVNVDVRIISSTARNLEEEITAGRFREDLYHRL
SVVPIRVPPLSERRDDIPELIEYFMEQISAATGLPRRQIGQDAMAVLQSH
VWPGNVRQLRNNVERLMILAGGGPDAVITADMLPQDVGSMVPTMPTGNNG
EHIMGLPLREAREAFERDYLIAQISRFSGNISRTAEFVGMERSALHRKLK
ALGVG
>RPA2594 ntrY, nitrogen regulatory signal transduction histidine kinase NtrY
MTSAETSAQPVDDPSTAEPRLRTWRKLLAPMAVGVALFSAFLTFIVLTGL
TPIAPTREVVVSFLLINAVTILLLLAIIAREVWKVVQARRRGRAASRLHI
QIVSLFSVIAVLPAVLVSIVANVTLDRGLDRLFSGPTRAVIQNSLIVANA
YLHEHGQLIRGDILGMANDISHARALFDLDRKSFREFLTNDAATRNLPGA
MLIDKDRNILEAAQNGIRRDFDVPAPEFLKNVDDTEPQIAVFIEANYVAA
VIRLKGFEDTFLYVARFLDPHVVAQLRQTQASVAEYSELEARRLGVQVAF
ALMFTVIALTVLMSAVLIGLNFANWLVAPIRRLMGAAHLVSTGDLHVQVP
VSKSEGDLSQLGMTFNKMTQELRTQRDELVSASELIDSRRRFIEAVLSSA
SAGIIGVDGSLSIGILNRSAEKLIGHAEAEALGHPLSEVIPELDEIMGTA
REGSQRLVQGQITIVRDGRERILNVRVTAEQTGHTSDSYIITLDDITELV
SAQRTSAWGDVARRIAHEIKNPLTPIQLSAERIKRKFGKVIVEDKNIFEQ
CTDTIVRQVDDIRRMVDEFSRFARMPKPVIEGEDVGDTVRQVVFLMRVGH
PDVDIEAEIKDEPLHARFDRRLISQALTNIIKNATEAIEAVPEEELGKGK
IEVVAAREGDDVVIDVIDNGIGLPKESRSRLLEPYVTTREKGTGLGLAIV
GRVLVDHGGGIELNDASHVRPGQRGAWMRLRFAMSGQPASPPGSGEPKQQ
AENEPRIAAASGS
>RPA4775 phoB, two-component phosphate transcriptional regulator PhoB
MAARILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRMKERIPDLV
VLDWMLPGLSGIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGAD
DYIVKPFSVPELLARVKGLLRRAAPERLATVLAYGDLELDRDKRRVARSG
RPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGVWGRDIYIDERTVDVHIG
RLRKLLNIGREQDPIRTVRGAGYALDDRFAKVEGSPS
>RPA4781 phoR, two component sensor histidine kinase phoR
MTTAPAPDEQARPVRELVLAPPPPSSTSLLTHWSDRLRHAAIILIAAALA
LTALVLFAQLAIGPAIAAFACLVAAALVPWRLHDGSNALDDALGVSPVEM
PVVRAIVGGMPDPAVLLDRAGRVIHLNAAAAQLAPALRVRELAQFALRSP
EIVTALREAIATSEPRRVTYLDHGSIERWLELIIAPVQVPTAFGGTDQCM
LMTFHDLTPLRRVEEMRADFVANASHELRTPLAALSGFIDTLQGQARDDP
KARERFLGIMHAQATRMARLIDDLLSLSRVELSAHVRPDAMIDLKPLIKQ
VTDGLEPLAKERQVVIELELPEDAATIAGDREELLRLFENLIENALKYGA
SGGRVVVSVVAAVSGDGVPEYRALVRDFGPGIAPEHLPRLTERFYRVDVG
DSRSQGGTGLGLSLVKHIVNRHRGRLLIESVLKKGATFTVCFPQGKPQV
>RPA3015 phyB1, Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB1
MTEGSVARQPDLSTCDDEPIHIPGAIQPHGLLLALAADMTIVAGSDNLPE
LTGLAIGALIGRSAADVFDSETHNRLTIALAEPGAAVGAPIAVGFTMRKD
AGFVGSWHRHDQLVFLELEPPQRDVAEPQAFFRRTNSAIRRLQAAETLES
ACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPA
SDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPVTGRPIDLSFAILRS
VSPVHLEYMRNIGMHGTMSISILRGERLWGLIACHHRKPNYVDLDGRQAC
ELVAQVLAWQIGVMEEQAITRQTLKGQAIQRSLINDIEQLHDHRAGLARN
SEALLELMGASGLCLHSREGVITIGQTPPGPIIDQLAQLAGRSGGSELFQ
TDRLSTIIPEAGAFAEVASGVLAVPLSRTPPRRVMLWFRPEVAQTVYWAG
NPDKSVTAESGRLRPRTSFAAWTEQTHGRAIAWQPHEVAAAVEIRDLIID
VILRNTEKLERINTQLARSNEELESFAHVASHDIKEPLRHIEAFAGLLAD
NIREMGDERLGVMVSGIEKSSRRLRNLINDLAEFSQLGRRSKPLSWVSLE
TVLNEVLADLQPRITEARAEIQADRLPFARCDHNQIRQVLQNLIANSLKY
RDPARPCRIRIFAQPDDNGGRAEIGSAPAIRICVTDNGIGFDKKYIDQVF
EPFQRLHGPDDYEGSGIGLAICRKIVQRHGGRVGVDTVPGQGSTFWFTLP
VSDDHGQG
>RPA3016 phyB2, Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB2
MSSRSDPGQPMASATDPSGRLALDLTECDREPIHIPGAIQPHGYLFVVSE
TDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHALHGGDPA
AINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDESRYTNEFFRSVR
VAIRRLQTAADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDR
DSGIPSLLDFHFPSSDIPAQSRALYTINPVRIIPDIGYRPSPLVPDINPR
LGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRDNRLWGMISCHN
LTPRFVSYEVRQACELIAQVLTWQIGVLEEAEIVRHSVRMRAIQNRLLHE
LGDEQGLTAGLSRVSEEMLALMGASGFALCSFDGVAAFGRTPSDDEIQAL
ASWLSHRESRGIFQTQQLSASFPEAEVYSDIASGLLAVPLGRASTTLMLW
FRPEVAQTVTWGGDPHKPVQIGPRGRRLQTRASFEAWREEVRDRSRPWRS
HEIVAAEEIRDLVVDVILGRAEELENANRELSRSNDELESFAYVAAHDLK
EPLRHIEAFAGLLNDLLLPEARSRLSLMVNGIEASSRRLRALINDLAEYS
RIGRQARPLQPVDLNQILTEVLSDLKPMLQDARAEVVSEPLPTVLCDGSQ
IRQLLQNLISNAVKYRDAERLPHVTIAATIDSPPPAAPAGANVRRARITI
ADNGIGFDEQYREQIFEPFQRLHGPDEYQGTGIGLAICRKIVHRHGGTIS
ATSRVGEGSVFTFTLPLCDQDAAES
>RPA0122 phyB3, Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB3
MDEADSGGIVTARNVDLSSCDRELVQYPEAIQPHGAMLTVDEQSDRVLHA
SANCAAFIGKPPEAVIGAPIAAVLGAGWHELLGSLHRMPLDSGPVNIARE
SFLGSDQGWHLFAHRCGGLIILEFEKAEPEAAGTTSNLYSEVRADLAALQ
ATEGVQAFFDLAVERIRAFTGYDRVMAYRFAEDGSGQVIAEARRDDLEPY
LGLHYPATDIPAPARRLFALSWVRHLPDVGYTPVPLLAAKSPLVTGPVDM
SFASLRSVSVMYTGYLKNMGVQSTLVMPLVKEGRLWGLISAMHHAAPRHI
SHQMRMAAEFLAHTLSLLMSAKEDAEQFERSSARKAAAEALTRLLDSEAD
IGAALHAAGALDLLSALIDAGGVVVQTGDEVATRGEAPAAAPLHELTSWL
RERARPVFATDRLPNLDPAAQAVASQASGVLALRPLPDQPMLIAWLRPEQ
IEDVQWAGDPRKPVEISDADGMQRLRPRNSFALWKESVQGRAVPWRDDEK
DAATRLAAAIAEIAAARKGRIERINRALDASHSELSRYTDVASAELKEHL
RGIHHLTTSLRRRQGEVLDEEGRQQVATILKLTQRMDALVDALLDRSRGG
SEAASETVDLEAVVDDALAPFARRIAEDRIEVRRPMRLGTAQGHREWIGE
VFTNLIGNAIRYNDKPERWIEIGVEAGSPPRYYVRDNGIGIADTDQQLVF
QMFHRVDQSEQKAEGAGVGLAMTRRIVAHHGGRIWVQSRLGEGATFYFTL
APDEERHDA
>RPA1490 phyB4, Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB4
MHSGLDNSAELRVSDFDPITLAGGTRTEVLPGAIQPHAALLALAPADLTI
VHAAGATASLLGAAAELLPGTAASTAFSSDQIARLQALATAERWIERPQH
AFTLNAPDATPIDVIVHHASGLLVVELDPRREPAPENSLALVQSMIRRAR
PAPNLQGFCDAMAAELRSVTGFDRVMVYRFARDGSADVIAEARGPETSPF
LGLRDPQPDISNQPGSISRIRVQPDVHAPAAPLWPAHSPRNGLALDLSFS
ATRSASPEHRLYLAQLGVAASLSLSLVVEGELWGLIVCHHATPRFLPYRM
REACALFAEMASLQLETRLAADQLAARLRSTRIHEELVTRMSQESDLAEG
LIRFYPNLLDFIPAAGVGLWIDGQFTGIGATPGPAQVAAMMGWLHGVPHD
GVYHTDCLALAYPPAKAFAGCASGLLALSLSNTPHNYVLWFRPEVVRVVT
WAGMPNKPVGVDAGAPRTPKGCASSWQESVRLHGEPWLDTDVDAAHRLRE
SLLDVVLRRIDGIARERRSAQLLQEQLMRQVELGLSRSKDVAKTLQEEKR
RRVLVEADLSKVLRRTVEDQEAERLRIARELHDTLGQSLTLLQLGFDKLG
QAAGDNPELQQRIAEMKSLTADVGRQANRLAWEIRPTALDDLGIQTAIQN
LLDSWSEKSSIEFDLHMTLGSRRLPSPVETTLYRVLQEALTNVVRHASAR
HVSVILQLGDDQVTMIVEDDGCGFVTAGRKPPSGRLGLLGIRERLSLVGG
SLEIESAPGKGTALYARIPL
>RPA0990 phyB5, Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB5
MPRKVDLTSCDREPIHIPGSIQPCGCLLACDAQAVRITRISENAGAFFGR
ETPRVGELLADYFGETEAHALRNALAQSSDPKRPALIFGWRDGLTGRTFD
ISLHRHDGTSIVEFEPAAADQADNPLRLTRQIIARTKELKSLEEMAARVP
RYLQAMLGYHRVMMYRFADDGSGKVIGEAKRSDLESFLGQHFPASDIPQQ
ARLLYLKNAIRVISDSRGISSRIVPERDASGAALDLSFAHLRSVSPIHLE
YLRNMGVSASMSLSIIIDGTLWGLIACHHYEPRAVPMAQRVAAEMFADFF
SLHFTAAHHQRRFQSSLRTRRTLDSLTSEMSFDASVDDFLRGNLKRIADL
IPSDGVGLWMNGVWTAHGSTPPADALPSILHLLTGRAGNEIVATHALTDR
IAAATDYAGAAAGMLAIPLSQVAGDYLLFFRKEQVQTLNWAGDPNKTYDT
GPLGDRLTPRKSFSIWKEQVDGQSVPWSPDDRDTAATIQVGLREVLLRQS
EILSAERKKAEVRQRVLNEELNHRVKNILALIKSLVNQPAGEGKSLEEFA
SALRGRIMALSFAHDQVVRSDGGGALLDLIQAELSPYPASQITLEGPDVG
VDARAYSVLALVLHELATNAAKYGALSRSSGRLKVAWTVGDDGRCDIEWT
ESCGPPVRPPTRQGFGTVLLSRSIPFDLGGWSEVDYLPGGVVARLGIPGQ
FVTETLQRLSSVQASGQSTDSSALNIADASILLVEDQLVIALDAEDMLGA
IGAKLVTSVASAEEALQTIAQQPPTLAILDVNLGNGSSLPVADELERLGI
PFIFATGYGDTAMIPERMRGLPIVRKPYSIDSLRGALSAMLDDRE
>RPA1529 ppsR1, transcriptional regulator PpsR1; Fis family
MLEDICPGASVQISEGVAGDLGAQSAAKLIAAATDVALVVDPQGVIRDVA
FTREELAHELDGQSRWLGARLVDIVTSDTQPKIRELLLDATVRDAPTWRQ
VNHPSPNGEDIPVLYSAINFGRDDRLLVVGRDLRQLAMMQQRLINAQQSM
ERDYIRLRHAETRYRLLFQVSSEAVMIVDAASELIVDANPATLALFDTSA
PEALNAPVIGFVDGADQQTVLNLFADVRSTGRDGRARIKLADGRRECELS
ASLFRQENASLYLVRLASHGAPPEAGSAKTASLLLNYFESAADAVVITQY
DGRVVRANLAFLEMAQLGSAEQARGELLDRWLGRTGVDLSVALANLRQSG
TIKLFATVLRGEYGAVAEVEVSAVALKDSDDKPCFGFAIRNVEKRLTTAA
TSKRELPRSVAQLTELIGRVPLRDLVRETTDVIEKLSIEAALELTGDNRA
SAADMLGLSRQSLYVKLRRYGLAEHAPEGDGADE
>RPA1536 ppsR2, transcriptional regulator PpsR2; Fis family
MASKSVHADITLLLDMEGVIREATLSPTMAAESVDGWLGRRWSDIAGAEG
GDKVRRMVEDARRSGISAFRQINQPFPSGVEIPIEFTTMLLGDRTGMIAV
GKNMQAVTELHSRLIAAQQAMERDYWRLRELETRYRLVFDAAADAVMIVS
AGDMRIVEANRAAVNAISRVERGNDDLAGRDFLAEVAAADRDAVRDMLAQ
VRQRGTALSVLVHLGRYDRAWMLRGSLMSSERRQVFLLHFTPVTTTPAID
DVDDDAVLRGLIDRIPDGFVALDSEGVVRHANQAFLDLVQIGSKPAAVGR
SLGVWMGRPGADLSSLLTLLRRYKTVRLFQTTIRGELGTETEVEVSAVDG
EDDQYIGVLMRNVARRLDAADDHDALRQALGPISKQLGRSSLRKLVKNAV
SIVEQHYVKEALLRSKGNRTATAELLGLSRQSLYAKLNCYGFDDKGVVAS
AADGAEGASDDAED
>RPA0052 ptsN1, putative nitrogen regulatory IIA protein
MTITDLVAPEAVIPALKVISKKQALQELAARAAELTGQNERTIFEVLLQR
EKLGTTAVGYGVAIPHGKLPKLEKLFGLFARLERPIDFEAMDGQPVDLIF
LLLAPEGAGADHLKALARIARLLRDQDVAKKLRASRDAHAIYSVLALPPA
TAA
>RPA2999 ptsN2, putative nitrogen regulatory IIA protein
MVIGDILLPAHVVVGLRCSDRAQLISELSSIASKTVALSQGLLSGRLLER
ERLGSTGVGDGVAIPHARFEKLAQPFALFARLQQPIDFDAIDGKTVDLVF
LLLLPAASSREQLPLLASVARHLRQQAIARELRAAADASTAFQVLTRA
>RPA0605 ptsP, nitrogen regulatory protein PTSI(NTR)
MFDSGHASRANARGPGRRWTMIVFGAFLLALRRAGRQCSQRRLRHMRSTS
GGPRVLLRRLRETMAEQVSAQERLDKIVVLIAANMVAEVCSVYVLRIDNT
LELYATEGLNREAVHQTVLNAHEGLVGLVASEATPLNLSDAQSHPAFSFR
PETGEEIYHSFLGVPILRAGNTLGVLVVQNRAKRTYVEEEVEALQTTAMV
LAEMIASGELSALAQPGAEPAARHSIHKTGAVLSDGIALGHVVLHEPRVV
ITNYIAEDLPKEIKRLDAALAKLRSDLDRMLERGDFAEGGEHRDVLEAYR
MFANDHGWSHKLHEAVATGLTAEAAVERVQSDTRARMLRSTDPYLRDRLH
DLEDLGHRLMRQLVGQDHAPSREQLPDNAILIARSMGPAALLDYDRKRLR
GLVLEEGTANSHVSIVARALGIAAIGEVPNAPGIADPGDAIIVDATSGSI
YVRPSAEIEAAYAERVRFRARRQAQYSALRDLPCATKDGQPIDLMINAGL
TIDLPHIEDTGSSGIGLFRTELQFMVGQSLPRSSDQLALYRAVLDAAGSK
PVTFRTLDIGGDKALPYMETVVEENPALGWRAIRLGLDRPGLLRSQIRAL
LRAAAGRYLRVMFPMISEVAEFDAAKSIIERELTYLRQHGHTLPERVDVG
TMLEVPALLYQLDELFKRADFVSVGSNDLFQFLFAVDRGNSKVSERFDTL
SAPILRALRDIVRKARAAKRSLSLCGEMASQPLAALALIAIGYRSLSVSA
LAHGPVKAMILGLDLAKAEAMIGPLLDAPAGSVSIRDKLIEFAEAHQLAL
>RPA0571 regR, two-component transcriptional regulator RegR, Fis family
MNAIPELNDHTDRSLLIVEDDKPFLDRLARAMETRGFAVTACDSVSSGLA
QIGKAAPAFAVVDLRLGDGNGLDVVSALKRERPDCRAIVLTGYGNIATAV
TAVKMGAVDYLSKPADADDVVAALLSTGTEKSEPPPNPMSADRVRWEHIQ
RIYEMCNRNVSETARRLNMHRRTLQRILAKRAPR
>RPA0572 regS, two component sensor histidine kinase, RegS
MSDDLISADFRHPRRHVRLDTILRLRWLAALGQLSAIFVVSEGLEFDFAV
MPCIVIIAVSGLVNLALQIAFNPMQRMEPIYAALLLALNISELAGLLYFT
GGLQNPFAFLFLGPVLISATALPTRMTISLGIFAAGCAAFLGYSHLPLPW
AGEEPVALPRIYLVGVWLSILLAIGVTSLYTFQVTEEARKLADALSAAEL
VLEREQHLTQLDGLAAAAAHELGTPLSTIFLISRELEKTAPPEMASDLRT
LREQAQRCREILGKIAQLSSAGAPFDRMPLSTLIEEAVAPHRDFGIAIKI
RLAQHGEPEPVVMRNPAILYGIGNILENAVDFARTAVEVNAWWNAETVQI
VVSDDGPGIKPDVLRRIGEPYLSRRRSADDPNRERSGLGLGVFIARTLLE
RTGAKVEFRNKTFPDHGAIVQLSWPRNRFETIEKTEETMA
>RPA2693 relA, GTP pyrophosphokinase
MASGRQGSKQMEQAGGAAAVAEPTAVAKPRSRARMMRQYDLVERVRSYNP
NTDEDLLNRAYVYAMMAHGEQTRASGDPYFSHPLEVAAILTNLKLDDATI
VAALLHDTIEDTEATRTEIDTMFGPEIGALVEGLTKLKRLELVSREAKQA
ENLRKLLLAIADDVRVLLIKLADRLHNMRTLEFVPPASRQRIAEETLDIY
APLAGRMGMQEMREELEDLSFRSLDPEAFTVVMQRLDALAERNRNLIGEI
ESQLSANLARHGITAEVTGRRKRPFSIWTKMERKSVGFEQLSDIYGFRVV
LDNVEACYRALGVVHTTWPMVPGRFKDYISTPKQNDYRSLHTTVIGPGQQ
RVELQFRTREMNQIAEYGIAAHAFYKDGVGSPTELLNRESNAFAWLRHTI
EMLSESSNPEEFLEHTKLELFHDQVFCFTPKGKLIALPRKANVVDFAYAV
HTDVGNSAVGCKINGKFAPLSSELQNGDEVEVLTSPVQSAPPAAWESLAV
TGKARAAIRRATRVAMRDQYAGLGRRIVERLFARAKIEYADDKLKGALPR
LARASVEDVMASVGRGEMKASDVARAMYPDYKEERIARFGGKKDVPDKVI
GKAPETGKVSSVIPIGGLHSGLPVKFAPNGGAVPGDRIVGIVTPGEGITI
YPIQSPDLKEFEEEPERWLDVKWDIDETTPQRFPARLFVQNVNEPGSLAQ
IAGVIAEHDGNIDNINMSRRSPDFTELTIDLEVYDLKHLSAIIAQLRAKD
VVAHVERVNG
>RPA3017 rphyB, response regulator receiver (CheY-like protein)
MNRQRTLPTVLVAEDHDYDKLILTEVFARASISADLRFVSDGEQTLDYIY
GRNRFADRGDAPYPAIVLLDLNMPRLDGRKVVRLLRQDETVRHLVVIALS
TSESAKHITEAYSIGFNAYLVKPANIADYVEAIRSLWHFWMNTASLPTTE
AYRT
>RPA1533 tspO, tryptophan-rich sensory protein
MNPIFVAAAVAIFVGLLGGSLTDTGTWYQSLVKPWWQPPDWAFGPAWTVI
FALAAMSAVYAWRGARTRAQRDWVIGLFAANGFFNVLWSMLFFTVRRPDW
ALLEVPLLWLSVLAGVVVFWRSARTASYYLLPYLVWVTFAAYLNWTVVAL
NTPF
>RPA4516 vieA, putative cylclic diguanylate phosphodiesterase (EAL)
MRATTEAEVCVPAGGFGRRKVAPRACIVDRKPHLRAFLADALEEFRFVTG
ECAGALELPARLAEHQPDLLVIGSSVDGVEAEAILDTLATTCFTGSVLTI
APRETIMSDAIRQHGVARGLRMLPPLATPFSVHTLSLSLAPLLPQEPAPE
PEIDVAEALKAGWLELWYQRCVDAHSLTPQGAEALLRMRHPNWGVVSPSA
FLPDGNDPHFRALSEFVVKRAIADWHYLLDHQGPVDLSINLPVSFLGNER
ALDDLSAWVPQHPAFGGLIIEIDASEIVDHLDEMAEISRRLRLRNVAIAI
DKVGADWPALMHLDTFPFVELKVDRSFVTGCADDRLKRSVCKRIVELAGD
YGARCTATGIETRADFQAAHELGFDKMQGYLFGKPMGLKKFARAAHARPV
AMQD
>RPA1374 vnfA, Sigma-54 dependent, Vanadium nitrogenase transcriptional regulator, VnfA
MMNLSEIVQVEVDDLTEEFSHCFTGECRVNVLPLLYQISKIITESEDLAK
TLTLILSVMQHQLKIHRGVVTLYDRESQTIFIHESFGLTEDQKARGLYAP
GEGITGQVVESGKPIIVPHLREDSRFLDRTKAHSDGNGNASFFCVPIIHG
RKVLGTISAERGYRNRRLLKQDVEVLSTIASMIAPAVELYLLENVDKVRL
ENENRRLQSELKERFKPSNIIGNSKPMQAVYDLIQKVATTKTTVLILGES
GVGKELVANAMHYNSGNADGPFVKFNCAALPENIVESELFGHEKGSFTGA
VGMRKGRFELADGGTIFLDEVGELSLPMQAKLLRVIQERTFERVGGNKPV
KVDLRIIAATNRNLLDMVAKGTFREDLYYRLNVFPITIPPLRDRGSDVVL
LADHFVARSAAAAGKDVKRISTPALNMLMAYHWPGNVRELENVIERSVIL
SDDGVIHGYNLPPSLQTSEETGTNFGCSMEAKVEAVEYEMIVEALKTHNG
NTTEAAKELGLTRRVLGLRIEKYGIDYRIYRRSYIAKQAAKQKA