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# Prochlorococcus marinus subsp. pastoris str. CCMP1986, MED4

>PMM1579 conserved hypothetical protein
MKSLITIKKIQDLLLQGLNTSYVDDETSRRMWWASLEVIQKEFLSHTQEG
GFWVASPLPALTDKKCLAKMQGWLWSPEGFPYFQMDNAGFLPVDHSIKIK
EDSNFVRNYKVLNLNTKDGYEPFLIIITTNFQCLLTIAGEKDERTLLMRC
DESSLKTAIELIDAKLNQENFEEAINFRNAIKNLGDLNINNEFDKSFWPS
LSIKLANLIPKLSVQNAVKNDDKNDQLTEAKLLQAISHEVRTPLATIRTL
ISSTLRKYNMDESMRNRLIQIDNECNEQIDRFGLIFNAAELVSNDNSPPN
QLARINLGEILYKLSPVWSKQLKRRGISIETDIPKQLPEILSDSEKLELM
LRGLIDKNTRGLREGSTLILELRPAGQKLKLQLKVKKFDTGKNEIFNTEN
GSDIGPVLNWNPQTGSLQLSQVATQKLLASLGGHVTQRRDTGLTVFFPIA
DIDHI
>PMM1369 GAF domain
MMQNLIPKKEEEERRLKALAEYRILGTKPESCYDDITKIAASTCNVPISL
MTLVDKDKQWFKSKVGLEINETKRDWSFCTHAIQENSPLIIQDAFQDERF
INNPLVTGDPKIRFYAGFPLKNRDGNKLGTLCVIDRKPGNLSLKQFNVME
LLSKQIVAFLELRKKSLNLLEALSNLHKQEGILSVCSYCREVKNNDGDWM
HLEKYLSKISDIRFSHGVCDVCMEKHFPDVVEVWNKKDSFQEGQKRFLKS
>PMM0938 possible Serine hydroxymethyltransferase
MEFILFLSKIDKEIIELINKSNNSIEENTALCTIDKKFVGFYKRREKVIV
ICTENAKKLGGYKEGERHDNHKTNLYIRRALRHETTHLVQSCNNNKPTGI
IKNIEDKIHSGKLKALNSSVQLSGNYSKELEAYVMEDKPRKVKEIMKSYC
L
>PMM1591 Low molecular weight phosphotyrosine protein phosphatase
MKKQTVLFVCLGNICRSPAAEAIFLDLINKKGLNDSFIVDSAGTGSWHIG
KKADTRMRIASRKRGVEIFSRARQINSNDFEKFNYIVAMDDSNYENIIDM
KSRKSLSDFASIKKIQNFRSVFHEIEVPDPYFGGDEGFDNVLDILEDSVS
GFLDTIY
>PMM0923 conserved hypothetical protein
MSFFQGKILLNFIIDLLNKPAINWSNFELNSSLQLNDFVDLLLEPLNTSQ
YSYNIKLGLHEALINAVTHGNKLDPNKSIRVRRIITPNWCVWQIQDQGNG
LEIKKRLYKLPKKFTSFNGRGLYIINECFDDIRWSNKGNRLQLALKR
>PMM0169 two-component response regulator
MNDTNQINNEAIRKSKILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDG
WEKAQTIFPDLIISDIMMPRSNGYALLEKIREDEKLGGTPVIFLTAKGMT
LDRTQGYLAGIDDYISKPFDPDELSARVKNVINRQERLLKEAARFADIDV
SKMAKQITEIKSMLTDQNPLNKENSIDIPSFTPREASVLQLVAEGLMNKE
IARQLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHLVK
>PMM0269 two-component sensor histidine kinase
MKLSKKFEELIIKQLESFGCSMGVTHLVMYLASTEQGTKASFEMIGQWPQ
IDRLLVSVEDDPSLKVSSPNRRWYPLQENDILLGVLRVETDLKEGNWPVS
LDSRLKALSLSLAKCVSIELERQNKNEEINYLKSQVNVIIHQLRNPLAAL
RTYAKLLIKRLGSDVDSIEIVERMIIEQKQINNYMDSFAQLNSPIQLPLD
IGEERLLLPPNLDNKKLITVQSLLRPILERGQANANLENRDWTEPSLWPD
WTLSPLKAKYAVIAEIVANLLENAFKYAHKDAEIGVAIMSKGLCIFDDGK
KITKIENEKIFQKGFRGSAAKKKDGTGVGLFLARKLAKQIGGELRLLENS
SINDVEELKSFKKKNIFYLELPIKELHS
>PMM1619 two-component response regulator
MSKASILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDL
IVLDVMLPKMDGFAVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDY
LSKPFSPKELEARIATILRRMGPSITVTETKEVPSGKGVMKFGNLVVDTN
RRQVSRAGERISLTYTEFSLLELLFDEPGKVVPRAEILEQLWGYPPRRAA
DLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYASQRVGEKATSLAS
>PMM1113 two-component response regulator
MQSTEQISASAPGSSQLPSTSQTPSRVLVVEPHPTLRTVLVQRLRQDGHL
AAAVGSAIEAVDLCREQSPDLLVSAEILEQNTAMRLAQQLGCSVIVLTAR
SGVEPLVSLLDEGADDVLRKPFGLEELAARCRTLLKRGRIGLQEKVAVGP
LEVHLLLRQVTLSEKPVELSPREFALLCALLMPPGMVRSRQELLRLAWPP
FSGGPRSVDTQVLTLRRKLEQAGLGEGGGITTVRQQGYRFSIDSI
>PMM0936 putative SOS mutagenesis protein UmuD
MKIPLLSDSVSAGFPSPADDYAEENIDLNEHLISNPFSTFFLRVKGDSMI
NSGIKDKDLIIVDKSLTAKPGNIIIAMIDGEFTIKRLSIKNNELYLKAEN
HKYPDFSFRNHIDIQIWGVVIYSIHSYL
>PMM0011 Protein phosphatase 2C domain
MSKIQKEKLLSNDVIQEFLEKDYKFPLHENDKFIETASSLSYYLKSFSNI
KRFLDYISLILKHTFNNQLSFIIPLNENGEIWKQNIKFAGATKNLKMDDE
IKSYFNNFDFSKNFKLKDDISFEKVLNNQFKEYVIKSYKVLSRGKCRGFV
YTFKKDTFNDSLKYERNLNFIISCLAIGLENYSLIKAKKKHENVDREISI
GAEIQSQLLPDYCPTINGVDLAAHCRPALQLGGDYYDFMSLKTNISEKRR
EKARWALVIGDVMGKGLPAGLFMTMLRGMLRAEVLTGLPPDRILHDLNQL
AIYDLDQSHRFITLFYSDYDPRTKKLRYANAAHNPPLLWKSSEQKIIKLD
SEGFVLGLQNDAEYQCGQIQLNKNDAILYYTDGVTDTSNALGERFDEERL
IQSFSKLCQQSLKSKDILNKIYKILDEFTGKNRQLEDDASIVVFQLD
>PMM0806 Bacterial regulatory proteins, Crp family
MNFHNYGEYSSKTVRKVTMVTGQSVLIDPSSRPMGTCLEVESGIARVYCP
CEETEGMTLAFLQSGDQLRTDLLCSEGVCVEGLTDLSFQSNVNISENAGF
DAVNEWTLQLLRIRHLGNAEQRLQALFSILVNRLGRRCGQWCVLPFRLTH
ERIGELIGSTRVTSTRLISKLRSSELLIAPLGTQTVSVAPSFIEASPL
>PMM1077 two-component sensor histidine kinase
MNEKKELKLILVAARNHLSRGDLKLLLSYLESDDCEFEISLQISEPTEQP
ELLELHRLVAIPALIKVSPAPKQIFAGSNIFVQLQTWLPRWKQEGVTKDL
GINLQPSKIDSIRTQKEFLLEEELLVLRQENETLTKRIESQERLLRMVAH
ELRTPLTAATLAIQSQKLGQIDIKKLQDVIKRRLEEIELLSQDLLEVGTT
KWEALFNPQKIDLGNISAEAILELEKFWRLRKIEIDTDIPSDLPSVYADQ
RRMRQVFLNLIENALKFSENSGRIKITLIHKTNQWVEITICDKGAGIPVS
EQKRIFLDRVRLPQTSEGTSGFGIGLSVCRRIVEVHGGRIWVVSEVGEGS
CFHFTVPVWQGQNKDQQHLTKG
>PMM1110 BolA-like protein
MATKSEVINLIKQKIVDSEVYVENLKGDDHLQVTVISSEFNGLSLVKQHQ
LVYSALKEELASEAIHALALKTETPN
>PMM0306 cpeS, phycoerythrin linker protein CpeS homolog
MTKNLITINQFIQKSLGEWKSIRSTHSLAFQEVENSTSKIEIKELESNNK
NVLGLLEKYNYTSKPSFIALSISWKAISDWEIDQKIEQDKTILLFLPKDK
NKGIVLRNKGYTESVISSSEYLIDENENLNIKTIYSSTASEERICFLSNH
IRSRYSVIRNNENNTVIQTSHTSEIRNMSILKD
>PMM1342 kaiC, possible circadian clock protein KaiC
MKDKKISKSIKMQVQKIPTGIEGFDDVCRGGLPAARSTLVSGTSGTGKTV
FSLQYLHHGICNFDEPGIFITFEESPLDIIRNAASFGWDLQKLIDQNKLF
ILDASPDPDGQDVAGNFDLSGLIERISYAIRKYKAKRVAIDSITAVFQQY
DAIYVVRREIFRLIARLKEIGVTTVMTTERVDDYGPIARYGVEEFVSDNV
VLLRNVLEAEKRRRTLEVLKLRGTVHMKGEFPFTMGDDGIIVFALGAMRL
TQRSSNIRISSGVKDLDEMCGGGYFQDSIILATGATGTGKTMLVSKFIED
AYNNKERAILFAYEESRAQLNRNATSWGIDFEKMENEGLLKIICAYPEST
GLEDHLQIIKSQINEFKPKRLAIDSLSALARGVSLNAFRQFVIGVTGYSK
QEEIAGFFTNTAEEFMGSHSITDSHISTITDTILLLQYVEIKGEMARAIN
VFKMRGSWHDKRIREYIITGQGPEIKDSFSNFEQIFSGAPHRVISDQSIP
NVFKGIEKN
>PMM1262 lexA, SOS function regulatory protein, LexA repressor
MPPSIDNDLTAAQNELFNWIKNYMRDFQHSPSIRQMMKAMGLKSPAPVQS
RLRHLQDKGYISWQEGKARTMQIVDEIFEGVPIMGSVAAGGLIETFSDLQ
ENLDVSEIFRKKDVFALTVNGDSMIDACIADGDMVLMEPIKDSFSLRNGT
IVSALVPGLGTTLKYFFKRNGKIYLEAANPAYDPIELNLNEVTFQGKLLA
VWRSVRN
>PMM1341 nblS, two-component sensor histidine kinase
MIESNEPNKIKLNPSKKFIDENNPDHWSSRVLTWWSGFSLRTKLLAIATL
VVSLLMTGITFFALNSIQRDAGMNDTRYARDLGLLLSGNVTELVANNQRK
EISNVAEKFWRSSRNLRYIFFTDADDIVQLGIPISATPTSSDNQFQLTRR
LKLPSELKKRPQFPLVRQHATPQGQVTDVFVPMLWKGKYLGTLALGVTPN
KKALSSAALTREVTIAVFISIWVLVILGAVFNALTITRPVRELVKGVREI
SKGNFKSRISLPMTGDLGELLTGFNRMASQLENYDEANIEELKAAQIKQQ
SLIATMADGAILLDSKGKIVLTNPTAKRLFRWEGRFLEGKYLLNEIPEIL
SNDLHTNIESILKREKENDDLRCSLGEPARTLRIVLQSVLDTNKVELKGI
AVTIQDLTREVELNAAQNRFISNVSHELRTPLFNIKSYVETLYDLKDQLS
NEEQLEFLGIANSETDRLTRLVNDVLDLSRLESGKIIQLEPMEIKPAIEQ
TLRNYRLNATEKNVSLAHDIEENIPSILGNFDLLLQVFDNLLGNGLKFSP
KNSTLKIRAYTWPDSCPAFPPNNNKDAPQCELVSPLPKVRIEIADNGSGI
SQPDQEKIFDRFYRVENAVHTEQGTGLGLSIVRGIIEKHGGQIRMASELG
IGTTFWFDLPLEQSDKDELLAQTINNVENFSDSQVSELF
>PMM0246 ntcA, Global nitrogen regulatory protein, CRP family of transcriptional regulators
MSPASRGFSRLTPQPSGQNTINTIGERFPINRTLMEVIKGLEGASTEMVE
RSKTIFFPGDPAERVYLIRRGAVRLSRVYESGEEITVALLRENSLFGVLS
LLTGHRSDRFYHAIAFTRVEMITAPANSVLRAIEADASVGLLLLQGLSSR
ILQTETMIETLTHRDMSSRLVSFLMVLCRDFGVASEKGITIDLRLSHQAI
AEAIGSTRVTITRLLGDLKDSGLLTIERKKITVFDPIALSKRFN
>PMM0705 phoB, two-component response regulator, phosphate
MAAKEHKSLQGSKILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDF
ILGEGIKDFDLILLDLMLPGLNGLELCRKIRNEELYTPILILSAKGNESD
RVLGLEVGADDYLTKPFGISELIARCRALLRRSKRGKEKKQKIETIIEYK
NIKMFTEECRVTNFNQEIILSPKEFKLLELFIKNPKRVWSRDLILEKIWA
IDFIGDTKTVDVHVRWLREKLEENPSAPKIIKTVRGFGYRFG
>PMM1284 phoH,psiH, PhoH-like phosphate starvation-inducible protein
MKEVSKTGHFTIDLPSSDAATALSGPGNSFLKKFESLTGVSLTIRGLQLE
LNGVIPKLERASALVELTRPIWEQGLEVPEVDLKAALSSLNMGESSSHAE
LGKKILARSKEGRYLRPRTISQKEYVESIENFDLTFAIGPAGTGKTFLAT
VCAARLLNEKKIEKIVLTRPAVEAGENLGFLPGDLQQKVDPYLRPLFDSL
HSIFGYDKTNSLIDKGIIEVAPLAFMRGRTLDNSLIILDEAQNTTTSQMR
MFLTRLGERSKMVINGDITQIDLKNDQLSGLVEASKIFSNIEGIKFCYLT
IDDVVRHPLVQKIIKAYE
>PMM0706 phoR, two-component sensor histidine kinase, phosphate sensing
MKIKSLQELVLFFHEKWKIKVKKFHKREDKNLLTKKRYKEFIDFPFEKIP
PFEILSWLDYSSQGWIILSSDLTIKYINDKALKLIRRIKCKDVIGKAIND
ISELEILRDKILYSRKKDLPCYLDFNIFGDPISARLVKGRKKTFLIVLES
KLSIEALKDRQTQLINDVSHELKTPLTSLILIGERLESTVSKKDKYLIKR
LKKESKRLKKMVEETLELSKLNNSFSYSTNQKIVIGKLIIETWETLKPLA
EKKEVNINIKCLDKYLISGDYQNLKRAYINIIDNAIRYSPNKEEIKIEIF
RRDSSVVIKIRDNGVGIEDGDFNKVFGRFYRGDPSRSKFKKSGSGLGLSI
TKTIITNNKGFIKAYNNKDGGATIETIFPLVK
>PMM0128 rpaA, two-component response regulator
MKISILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKGQALALQYSPDLI
LLDLMLPSVDGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGAD
DYITKPFDLEELYVRIKALLRRTNRAQLNSTNQQEILNYGPLTLVPERFE
AIWFESAVRLTHLEFELLHCLMQRHGQTVSPALILKEVWGYEPDDDIETI
RVHVRHLRTKLEPEPRKPKYIKTVYGAGYCLELPAVAQVDNGMQEFAEST
N
>PMM0134 rpaB, two-component response regulator
MAVSSQTKETILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLFKD
YDPDLVVLDVMMPKLDGYGVCQELRKDSDVPIVMLTALGDVADRITGLEL
GADDYVVKPFSPKELEARIRCVLRRIDKEQLPGMPNSGLILVTDIKIDTN
RRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVWGYTPERHV
DTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQRIVDISPFDGK
>PMM0191 spoT, guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
MAEATANSKEKNEIKVSTIILPENKNYESESLKYEINIPNWLLEIIQNYE
VSNKKNNSNQDLIVKAFKLAYEAHNGQLRASGEPYIIHPLAVADLLKEIG
ASSSVVAAGLLHDVVEDTGIALSEIEVNFGLEVKVLVEGVTKLGGIHFNN
RTEAQAENLRKMFLAMASDIRVVLVKLADRLHNMRTIQWLNEERKERIAR
ETREIYAPLANRLGINRFKWELEDLAFKFLEPEEYKNLKDQIAVKRSDRE
KRLNVTLNLMKENLVSSGLVNFEITGRPKHLYGIWSKMERQQKQFGEIYD
VAALRIIVSNTDSCYKALAVVHDTFRPIPGRFKDYIGLPKPNGYQSLHTS
VIGRHRPIEVQIRTSSMHQIAEFGIAAHWQYKEGGSPASSNAERFNWLRQ
LVEWQQEGNEKDHNDYLASIKEDLFDEEVFVITPKGDVVGLRKGSTAIDF
AYRIHSEIGNHCNGIRINEKLSPLSTSLQNGDFIEILTNTNSTPSLDWLN
FVVTPTAKNRIRQWYKKSHRDETIKRGKDLLEKEIGRNGFESLISSDAMK
KVAHRCNLKSTEDLLASLGFGGLTLHQVLNRLREEIKIQTEEIKNESNEE
LARSLINKNNSIATKSHATNKSPITGVEGLDYRIGKCCSPLPGEEIIGTV
SLGNHGITIHRRDCENVIPIPIERRLPVAWNQENKILDNKFPIQLRIEVI
DRVGVLKDILMRLSDKGINVSDANVKTAFGKPAIINLCVGLESYSQLHKT
IDQIKSMADVLDIARVGIS
>PMM0762 typA / bipA, tyrosine binding protein
MSVSIKEIRNVAIIAHVDHGKTTLVDALLSQSGIFRDNEVVPTCVMDSND
LERERGITILSKNTAVNYKNTRINIIDTPGHADFGGEVERVLGMVDGCLL
IVDANEGPMPQTRFVLKKALEKGLRPIVFVNKIDRPRVVPEIAVDKVLDL
FLELGADDDQCDFPYLFGSGLSGFAKEEMESNNDNMMPLFEAILRHVPPP
VGDLNKPLQLQITTLDYSDFLGRIVIGKIHNGTIKNGQQASLIKESGKTI
KGKVSKLLGFEGLQRIDINEAFAGDIVAVSGFDDVNIGETIACPDSPHPL
PLIKVDEPTLNMTFVVNDSPFAGKEGKFVTSRQLKNRLERELLTNVALRV
EETDSPDRFSVSGRGELHLGILIETMRREGFEFQISQPQVIFREIDDVQC
EPIETLVLDVPEVAVGSCIEKLGSRKAEMKNMQTSSDGRTQLEFLVPSRG
LIGFRGEFVRITRGEGIMSHSFYEYKPKAGDFETRRNGVLISFEEGVATF
YALKNAEDRGVYFIKPGVKVYKGMIIGENNRSQDLELNICKTKQLTNMRS
AGAEELDTLQSPVDITLERALEYIGPDEMLEVTPDSIRMRKLNKKKTMKK