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# Chlamydophila pneumoniae J138, J138

>gid:459853  CPj0068  CT360 hypothetical protein
MIKKFFIYSLIFSCSFSAPLKGICNEDVSSQSRIEEDPEVLITQLNELIE
TPIEEGKEIRNELQAISDGQKSSEEIEESCGTSDSEGLSEKTDKESSNEY
VLDFFDSMVQRLEGISKMCQSGQVAQIIDCFNREFDIRNRELELKNRELE
LREKDLEFKKSILDWNKEKVSRELAFQREQDIKQTLMLLKK
>gid:459882  CPj0095  S/T protein kinase
MGEVYLAYDPVCSRKVALKKIREDLAENPLLKRRFLREARIAADLIHPGV
VPVYTIYSEKDPVYYTMPYIEGYTLKTLLKSVWQKESLSKELAEKTSVGA
FLSIFHKICCTIEYVHSRGILHRDLKPDNILLGLFSEAVILDWGAAVACG
EEEDLLDIDVSKEEVLSSRMTIPGRIVGTPDYMAPERLLGHPASKSTDIY
ALGVVLYQMLTLSFPYRRKKGKKIVLDGQRIPSPQEVAPYREIPPFLSAV
VMRMLAVDPQERYSSVTELKEDIESHLKGSPKWTLTTALPPKKSSSWKLN
EPILLSKYFPMLEVSPASWYSLAISNIESFSEMRLEYTLSKKGLNEGFGI
LLPTSENALGGDFYQGYGFWLHIKERTLSVSLVKNSLEIQRCSQDLESDK
ETFLIALEQHNHSLSLFVDGTTWLIHMNYLPSRSGRVAIIVRDMEDILED
IGIFESSGSLRVSCLAVPDAFLAEKLYDRALVLYRRIAESFPGRKEGYEA
RFRAGITVLEKASTDNNEQEFALAIEEFSKLHDGVAAPLEYLGKALVYQR
LQEYNEEIKSLLLALKRYSQHPEIFRLKDHVVYRLHESFYKRDRLALVFM
ILVLEIAPQAITPGQEEKILVWLKDKSRATLFCLLDPTVLELRSSKMELF
LSYWSGFIPHLNSLFHRAWDQSDVRALIEIFYVACDLHKWQFLSSCIDIF
KESLEDQKATEEIVEFSFEDLGAFLFAIQSIFNKEDAEKIFVSNDQLSPI
LLVYIFDLFANRALLESQGEAIFQALDLIRSKVPENFYHDYLRNHEIRAH
LWCRNEKALSTIFENYTEKQLKDEQHELFVLYGCYLALIQGAEAAKQHFD
VCREDRIFPASLLARNYNRLGLPKDALSYQERRLLLRQKFLYFHCLGNHD
ERDLCQTMYHLLTEEFQL
>gid:459892  CPj0104  CT017 hypothetical protein
MRMLQISMLLLALGTAINSPAIYAADSQSVSFPEQLPSSFTGEIKGNHVR
MRLAPHTDGTIIREFSKGDLVAVIGESKDYYVISAPPGITGYVFRSFVLD
NVVEGEQVNVRLEPSTSAPVLVRLSRGTQIQPASQEPHGKWLEVVLPSQC
VFYVAKNFVANKGPIELYTQREGQKKIAMDLINSALNFAHIELEKSLNEI
DLEAIYKKINLVQSEEFKDVPGIQGLIQKALEEIQDAYLSKSLESQNTSI
ASSQCSTPKVSSSEVTTSLLSRHIRKQTALKTAPLTQGRENLEYSLFRIW
ASMQQGNDHSEALTQEAFYRAEQKKKQVLAGVLEVYPHVVKNNPGDYLLK
AQENTIAFLYGTSINLEQWLGKRVTVECLPRPNNHFAFPAYYVVGIKEAS
>gid:459946  CPj0156  hypothetical protein
MMHNIVVLSEEPGRSAFLGRTAFFPNKYPIAQGGVGIPSTIGNLFTIWYC
FYFYRAATPQSDHPDGCGFILLERLKELGAGFFYCDLRESNTTGFTLFFE
GSNKGVLKNHLFIRDE
>gid:460090  CPj0294  cAMP-dependent protein kinase regulatory subunit
MNLIDRAFLLKKTIIFQSLDMDLLLTIADKTETIIFKPGSNVFSIGQPGF
SFYIIVEGYITISKEKLESPLNLKPLDCFGEESLFNNKPREYNASANTQV
RMLVLSKGQILNIVEECPSVALSFLELYAKQIKFREP
>gid:460192  CPj0397  PP2C phosphatase family
MDFDYFGLSDIGRVRARNEDFWQVNLMSQVVAIADGVGGRLGGDIASQEA
VTSLMELIDEQQSKLMGYEDDQYKETLKKILLEVNGVVYEHGQMEEHLQG
MGTTLSFIQFRKDRAWLFHVGDSRIYRIREGELRRLTEDHSLENQLKNRY
GLPKQSDKVYSYRHILTNVLGSRPYVMPDIRNLPCEKEDLYCLCSDGLTN
MVPDIDIRDILNQPATLEERGNALISLANTRGGDDNATVVLVRIQ
>gid:460275  CPj0481  hypothetical protein
MATSVPVTSSTSVGEANSSNERFTERTSRMYYAALVLGALSCLIFIAMIV
IFPQVGLWAVVLGFALGCLLLSLAIVFAVSGLVLGKTLEPSREATPPEIV
AQKEWTTQQDVLGNEYWRSELISLFLRGDLHESLIVDSKDRSLDIDQSLQ
NILKLEPLSTTLSLLKKDCVHINIILHLVRQWNLLGVDLSPEVTAHAEEL
LLFLIEEQYYSPDILKLIRYGDALQATSPLMDWADSGSFSVDADGVFSCR
REECSPEDALAQFDLLLALENPDRRFLKDSFLTYIWSSSFFEKFLHRHLE
SLQRKLPETAIDVARYEAQIQTFLSRYFQKLDLINAMSLDWGYNCAEGEK
CYESANQRLDNLFIAFSSSVPAMKRLFDKYGSVVRVDRRQIREQILSNTE
ILENESGFLCSLYEYPLSYLIDWAVLLDCVRGTEISLEDQADYTVCLQGL
DSMLSQFASRLQSGQKVLNPRDVLSEQAAVMLVHGLAAQGVSFQGLKALM
YLTAVPQRMWLGALPLFESFPVFNRMKEFLGESLGD
>gid:460510  CPj0703  S/T protein kinase
MDCRGGIPLPEPQVIGGYHVKKILSKKLRSRVVHGLHPETRHSTVIKVFS
PSPSFTSRSVYNFLKEAQSLHQITHPNIVKFHRYGKWQDCLYIAMEYIEG
ISLREYILAQFISLPQAIDIIFDIAQALEHLHSRNILHKDIKPENILITP
QGKIKLIDFGLADWDTEIQRAHPSVIGTPYYMSPEQRQGESHSPASDIYA
LGLLAYELILGHLSLGRVFLSLVPERISKILAKALQPSPNNRYSSTREFI
QDIHHYRMSGDMQEDLRIKDHTVALYEQLQTQRFWLAPETLRFPDFISGV
LYHQGYPLYPHAYDTLLEGDVFNLWLGYSPISNATIALSVVKSLVCQQDL
QRPLLDRVCEINECLIRMKIPIDEMGISILCLEISKENKELSWIACGKTV
FWIKRQGRVVQDFESFSPGLGKITSLQIRETKVAWEIGDEAVVCTLELEE
SVASLKTLSLAELQDRRQKAIFCPIESIHGGIQSRQHGSNSPSTLISLKR
IR
>gid:460519  CPj0712  FHA domain
MAVRLIVDEGPLSGVIFVLEDGISWSIGRDSSANDIPIEDPKLGASQAII
NKTDGSYYITNLDDTIPIVVNGVAIQETTQLKNEDTILLGSNQYSFLSDE
FDPQDLVYDFDIPEENFSNDSGDLSDSNEQGKDLEPRQTSETNHSPKPKE
KLTKDQGSSDPITSGDQELADAFLASAKAEKNQPRAKVAKKGLKESSNES
LNPKEQNAKDSPKGEERTNKPQNAIMEDNGASPRQDPQPKSAEPSLKNTA
RDETPLKENKPVEEKANKKATPDSPEKKDQPEEGSKKEGSKIEATPLDSQ
KESEDKEAEEAFVQEEEENLTEDNKEDSDSAADANDDTASDHTAEDNKET
PKKVENEKSAVLSPFHVQDLFRFDQTIFPAEIDDIAKKNISVDLTQPSRF
LLKVLAGANIGAEFHLDSGKTYILGTDPTTCDIVFNDLSVSHQHAKITVG
NDGGILIEDLDSKNGVIVEGRKIDKTSTLSSNQVVALGTTLFLLIDHHAP
ADTIVASLSPDDYSLFGRQQDAEALERQEAQEEEEKQKRATLPAGSFILT
LFVGGLAILFGIGTASLFHTKEVVPLENIDYQEDLAQVINQFPTVRYTFN
KTNSQLFLIGHVKNSTDKSELLYKVDALSFVKSVDDNVIDDEAVWQEMNI
LLSKRPEFKGISMHSPEPGKFIITGYVKTEEQAACLVDYLNIHFNYLSLL
ENKVVVETQMLKAIAGHLLQGGFANIHVAFVNGEVILTGYVNNDDAEKFR
AVVQELSGIPGVRLVKNFAVLLPAEEGIIDLNLRYPNRYRVTGYSRYGEI
SINVVVNGRILTRGDVIDGMTVTSIQPNAIFLEKEGLKYKIDYNK
>gid:460562  CPj0751  CT651 hypothetical protein
MFRCILFGIFLLTCFSSGGVLYYLFCSHDFSIGPKEKSRSVWIEEEKEFT
DSVLHHLPSQHQHLHILCFQGFLLQKQQKFSQAEKIFSKVYDEAQDGPFL
FKEEILGSRLINSFFLEKTDVMETILCLLNQRCPNSPYYHLFKALVCYKQ
KLYREVIEQLAYWQEEKTRALAPLLNISIEQLLTDFLLDYISAHSLIEQK
MFPEGRVILNRNINRLLKHECEWNAKTYDRIAILLSRSYFLELVESKSAD
IYFDYYEMVLFYLKKIYILEQCPYAELLPEEELVSLIMEHVFILPKDKLY
PLIQLLEMWQKHYVHPNSSLVVQILVDRFSTHMEGAIRFCEALVSFSGLE
ELHQQIITTFEELLSNKVQQIKTEEAKQCVALLHILDPSISISEKLALSS
DTLQNIVSGDDEQHTKLRNYLDLWEAIQSYDIDRQQLVHHLVYGAKDLWK
KGGNDEKALNLLQLVLRFTSYDIECESVVFLFIKQAYKQALSSHAIARLL
KLEKFISEANIPSIVISEAEKANFLADAEYLFAHEDYDKCYLYSMWLTKV
APSPQSYRLAGLCLMENKRYDEALEFLCMLSPNNSINDYKTQKALAFCQK
HQSKDRVAS
>gid:460576  CPj0765  CT647 hypothetical protein
MKKWISILILSFLSLLSILPVLAITINHVKISQRWSDLNSQILTLKVIRD
HEDQVIKHNARISKDRNNLSIESLNASCKQLRPLSKERERLNKLNSNSLL
AQSKEVWERKRALEKSNHQLVWNCEQMHNDFAFVRLEQATEMDNEDIESL
FSLFNPENPVAPLVFFTCWKMTKQTTPLGNEVWLTHAEAISRWI
>gid:460820  CPj1004  CT847 hypothetical protein
MSIQPVSNTTTKADKVIPDSTKVISDSITINKQSAFYFCISVMLRLSEST
TEYGKSILAVLEDNTIVQQQRVKELINLPLLKVPDLQKKDGSDDEYKNQN
EIQAYQSSNQQISANRQMIQQELSSAQQRAQANQKSVNSTTIESMQILQA
TSSMLSTLKELTIKANLTNSPSD
>gid:460821  CPj1005  CT848 hypothetical protein
MWIIDPLSAKKPLQAAINVPGTPITGGPNTATADDIIAKFSKDSNPLIVT
VYYVYQSVLVAQDNLSIIAQELQANSSAQTYLNNQEALYQYVSIPKNKLN
DNSSSYLQNIQSDNQAIGASRQAIQNQISSLGNAAQVISSNLNTNNNIIQ
QSLQVGQALIQTFSQIVSLIANI
>gid:460835  CPj1019  CT860 hypothetical protein
MTVSYQSISTPPPEGEFDIFVDGNATEEAVVAAEVQVALPAGEQYAMLRA
TSELCFGILTQSECALTQALPPKEKPLQEEQFLVKNGILMRSTSLPNLKP
GQSQQTSLASHRNPLAQQSTSSNSTGKASTETTSSSFPFFSCKAPEGDSS
VDKTFTVSVQTPKAQEQQEASASQSQAQFHVRSYSSSTIKEHSAKEKVSQ
STKSAETQKHTQTKSDATLSPMSLYSTLHKEVPQALSSTKSQQKDEEHRD
QRQQEGYEQEQEQEEGKKKTPWCTVESLQQTSSSNQVYESYTPIIPDPIV
EFALSESQLSVLAGKRVTNLDVLRICTELMKLMLKSRANDTMTRLEEREL
MEREAHELAASYSRQAKYARWLGIATATLGILGAIAPMVGEISGDSILGF
VQRISGRFKDATAKTFFKGIGKVFTSLSQLTEAASKVHELSESAVRAVAE
YRKEVFRMRQDEVTRTIEEVKDNWKSMDNFLLNILQTEHDAARSLYQ
>gid:460276  artJ  arginine periplasmic binding protein
MIKQIGRFFRAFIFIMPLSLTSCESKIDRNRIWIVGTNATYPPFEYVDAQ
GEVVGFDIDLAKAISEKLGKQLEVREFAFDALILNLKKHRIDAILAGMSI
TPSRQKEIALLPYYGDEVQELMVVSKRSLETPVLPLTQHSSVAVQTGTFQ
EHYLLSQPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNL
VATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKK
WQLSEVAYE
>gid:460384  atoC  2-component regulator
MAIKNILVVDDEPLLRDFLSELLTSQGFIPDTAENLRNALQMIRSRDYDL
VISDMSMPDGSGLDLIKIIKQSSPHTPVLVVTAYGSIENAVEAMHQGAFN
YLTKPFSSEALFAFISKAEELKNLVHENLFLHSQTTPDSHPLIAESKAMK
DLLAIAKKAASSSANIFIHGESGCGKEVLSFFIHHNSPRANHPYIKVNCA
AIPETLLESELFGHEKGAFTGATTKKAGRFELAHKGTLLLDEITEVPVNL
QAKLLRAIQEKEIEHLGGTKTLSVDVRILATSNRKLKEAIDDKSFRQDLY
YRLNVIPLHLPPLRDRQDDILPLANYFLNKFCRMNNTPLKTLSPKAQELL
LNYPWPGNIRELSNVLERVVILENTSLLTEDMLALA
>gid:460382  atoS  2-component sensor
MNVPDSKNLHPPAYELLEIKARITQSYKEASAILTAIPDGILLLSETGHF
LICNSQAREILGIDENLEILNRSFTDVLPDTCLGFSIQEALESLKVPKTL
RLSLCKESKEKEVELFIRKNEISGYLFIQIRDRSDYKQLENAIERYRNIA
ELGKMTATLAHEIRNPLSGIVGFASILKKEISSPRHQRMLSSIISGTRSL
NNLVSSMLEYTKSQPLNLKIINLQDFFSSLIPLLSVSFPNCKFVREGAQP
LFRSIDPDRMNSVVWNLVKNAVETGNSPITLTLHTSGDISVTNPGTIPSE
IMDKLFTPFFTTKREGNGLGLAEAQKIIRLHGGDIQLKTSDSAVSFFIII
PELLAALPKERAAS
>gid:460328  dksA  DnaK suppressor
MPLSDDEIEQFKKRLLEMKAKLSHTLEGNAQEVKKPNEATGYSQHQADQG
TDTFDRTISLEVTTKEYELLRQINRALEKINESSYGICDVSGEEIPLARL
IAIPYATMTVKAQEQFEKGLLSGN
>gid:460404  fliY  glutamine binding protein
MKIKFSWKVNFLICLLAVGLIFFGCSRVKREVLVGRDATWFPKQFGIYTS
DTNAFLNDLVSEINYKENLNINIVNQDWVHLFENLDDKKTQGAFTSVLPT
LEMLEHYQFSDPILLTGPVLVVAQDSPYQSIEDLKGRLIGVYKFDSSVLV
AQNIPDAVISLYQHVPIALEALTSNCYDALLAPVIEVTALIETAYKGRLK
IISKPLNADGLRLAILKGTNGDLLEGFNAGLVKTRRSGKYDAIKQRYRLP
>gid:459894  phoH  ATPase
MKKTMVIDTSVFIYDPEALFSFENTRIIIPFPVIEELEAFGKFRDESAKN
ASRALSNIRLLLENAKTKVTDGVLLPSGSELRIEVAPLSNDDRRGKLLTL
ELLKIIAKREPMVFVTKSLGRRVRAEALQIESRDYESKRFSFRSLYRGFR
ELQVSQEDIENFYKNGYLDLPLDVVSSPNEYFFMSAGENHFALGRYYVSE
GKIIALKAMDKSVWGIKPLNTEQRCALDLLLRDDVKLVTLIGQAGSGKTI
LALAAAMHKVFDKETYNKVLVSRPIVPMGRDIGFLPGLKEDKLMHWMQPI
YDNMEVLFSINQMGNSSEALQALMDAKKLEMEALTYIRGRSLPKAFIIID
EAQNLTPHEIKTIISRAGKGTKIVLTGDPTQIDSLYFDENSNGLTYLVGK
FHHLALYGHMFMTRTERSELAAAAATIL
>gid:459845  ptsN_1  Pts IIA Protein
MPSYCQNQQDFSLFSLLSPRLVMFLGKHSRDEILQDLTDLVDAAGLLEDK
QAFFDALVRRENIMSTGIGMGVAIPHGKLESCSNFFIAIGIHTQGILWDA
IDGALVRLVFLIGGPENAQAEYLKLLSTLTLSLREESRRQQLLQVNTIEE
VMNVFVGM
>gid:459846  ptsN_2  Pts IIA protein with HTH DNA-Binding domain
MDLKLDEVASLLDVSEHTVLQWLKEGAIPSYSMNNEYRFSREEIEDWLLH
NQALMIQERGEDKEALKDLSLKYSLYKAIHRGGVLCDVVVHSKEEALQYA
SKYIAQKFQLDESVLFEMLSHRENLMSTGIGEGIALPHAKDFLINAYYDI
VVPMFLAEPIEYGALDGKPVGILFFLFACQDKSHLNLVNKIVHLGMSLNA
RSFFKNYPNKDQLLAYVKEWESQTH
>gid:460605  rbsU  sigma regulatory family protein-PP2C phosphatase
MIPFTKTIGFRLWLACAVAIIAPLGINIVWLNLDQYRTIVSAISTALKEN
AAFKANTLTQIVPLNVDVLSLFSDVLDLDAGIPETPNVLLSNEMQKVFQG
IYNEISLIKVFPNGDKIVVASSIPEHLGENYNHKIDIPKNTPFLAALKQS
PKNQEVFSVMQANVFDAKTQELQGILYTTFSAESLLKDLLINKQSYLTVK
TAILSKYGVILKASDPALHLHTVYPDMTKEKFCQVFLNDDPCPIDSELGP
LTLSPLDIGENFYSFKIKDTEIWGCIENVPSIDIAVLSYAKKEESFAPLW
RRARMYTAYFFCILLGSLIAFIVARRLSLPIRKLATAMIESRKNKNCLYT
DDSLGFEINRLGHIFNAMVENLHKQQHLAKTNFEMKENAQNALHLGEQAQ
QRLLPNTLPSYPHIELAKAYIPAITVGGDFFDVFVVGEGSKARLFLIVAD
ASGKGVNACGYSLFLKNMLRTFLSRSSSLQQAIQETSRLFYNNTKNSGMF
VTLCVYCYHQTSNTMEYYSCGHPPACYLDPDGETSWLFHPGMALGFLPEV
ANITSKLFHPKPGSLFVLYSDGITEAHNNNNDMFGEERLQAAIQGLTGKS
AADAVHRLMLSVKPFVGNSHQHDDITLLILKVLES
>gid:460305  rsbV_1  sigma regulatory factor
MSDIQKEEHGSTTIFHLHGKLDGISSPEVQENISQSLAAGSKNIILDCAH
LDYMSSAGIRVLLQSYHQVGQHSGKIVLTTVPKTIEQTLYVTGFLSYFKI
FNTVDEAIQTLNKDGD
>gid:460724  rsbV_2  sigma regulatory factor
MNLSAKEYGDIIVIYLQGSLDAVSVPSVQEYLEQFIQKKHLKIALNVTDV
SYISSAGIRLLLSNFKLVQSLGGKMCLCCVKESVTEVMRIAGLDQLILLC
QSEQECLSKL
>gid:460473  rsbW  sigma regulatory factor-histidine kinase
MTFFEGETVFPAVLSELHSMLDLIKRAGKQSKCPQEKLLKLELACEELLV
NIISYAYQGENSPGTIAISCISHRGDLEVVIKDHGPSFNPLAVSINIQED
LPLEQRKLGGLGIFLAKSSVDEFLYAREDHCNIVHLKMLNGQHS
>gid:460561  tctD  HTH transcriptional regulatory protein and receiver domain
MIGDKIILFVTEDLSLSSQLKDLASQRSDYQILVSPVFPTSFESVAIFCE
YLLLPEQIFSPGIFPEEDLIVLFDTFQEEAITKVLNQGATGYLLRPITAK
VLDAVIRAFLRQHEVLEHSIPDTMTFGDHTFRVLNLVIESPEGSVYLTPS
EAGILKKLLINRGHLCLRKNLLAEIKGNTKEIIARNVDVHIASLRKKLGP
YGSKIVTIRGVGYLFSDDDSIPLQNHDNTAHPNEE