Gene list
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COG category: Signal transduction mechanisms
Organism: Nitrosomonas europaea ATCC 19718, ATCC 19718
Number of genes found: 111
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| Nitrosomonas europaea ATCC 19718, ATCC 19718 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | NE1314 | probable two-component sensor | SubName: Full=Probable two-component sensor; | chromosome | CDS | 1433412 | 1389 | - | 0.514039 |
| NA | NE0286 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 315293 | 489 | + | 0.523517 |
| NA | NE0440 | Domain of unknown function, DUF9 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 478104 | 1476 | - | 0.495935 |
| NA | NE1296 | Cyclic nucleotide-binding domain:cAMP-dependent protein kinase | SubName: Full=Cyclic nucleotide-binding domain:cAMP-dependent protein kinase; | chromosome | CDS | 1415582 | 750 | - | 0.52 |
| NA | NE0975 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1058239 | 246 | - | 0.53252 |
| NA | NE0728 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; | chromosome | CDS | 787849 | 1257 | - | 0.556086 |
| NA | NE1201 | Universal stress protein (Usp) | SubName: Full=Universal stress protein (Usp); | chromosome | CDS | 1302722 | 963 | - | 0.550363 |
| NA | NE1376 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1497929 | 423 | + | 0.468085 |
| NA | NE1250 | two-component hybrid sensor and regulator | SubName: Full=Two-component hybrid sensor and regulator; | chromosome | CDS | 1363930 | 5142 | - | 0.546869 |
| NA | NE0127 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 155926 | 1050 | - | 0.537143 |
| NA | NE0377 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; | chromosome | CDS | 425394 | 2052 | - | 0.511209 |
| NA | NE1738 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; | chromosome | CDS | 1873895 | 1497 | + | 0.547094 |
| NA | NE0974 | PemK-like protein | SubName: Full=PemK-like protein; | chromosome | CDS | 1057892 | 348 | - | 0.511494 |
| NA | NE1102 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 1194610 | 1059 | + | 0.580737 |
| NA | NE1860 | conserved hypothetical protein | RecName: Full=Probable chemoreceptor glutamine deamidase CheD; EC=3.5.1.44; | chromosome | CDS | 2010194 | 606 | - | 0.491749 |
| NA | NE2485 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 2712764 | 1053 | - | 0.5717 |
| NA | NE1374 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1497153 | 234 | - | 0.444444 |
| NA | NE2081 | sigma-54 dependent response regulator | SubName: Full=Sigma-54 dependent response regulator; | chromosome | CDS | 2262244 | 1314 | - | 0.555556 |
| NA | NE1635 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1766638 | 909 | - | 0.518152 |
| NA | NE1579 | PemK-like protein | RecName: Full=mRNA interferase; EC=3.1.-.-; | chromosome | CDS | 1712013 | 339 | - | 0.489676 |
| NA | NE0080 | Diguanylate cyclase/phosphodiesterase domain 2 (EAL) | SubName: Full=Diguanylate cyclase/phosphodiesterase domain 2 (EAL); | chromosome | CDS | 99423 | 1725 | - | 0.468406 |
| NA | NE2075 | Diguanylate cyclase/phosphodiesterase domain 2 (EAL) | SubName: Full=Diguanylate cyclase/phosphodiesterase domain 2 (EAL); | chromosome | CDS | 2254620 | 2886 | - | 0.531532 |
| NA | NE1078 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 1163597 | 1044 | - | 0.557471 |
| NA | NE1306 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1426777 | 327 | - | 0.513761 |
| NA | NE1858 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2007987 | 825 | + | 0.527273 |
| NA | NE2386 | Bacterial SH3 domain homologue | SubName: Full=Bacterial SH3 domain homologue; | chromosome | CDS | 2592392 | 687 | - | 0.496361 |
| NA | NE1909 | Diguanylate cyclase/phosphodiesterase domain 2 (EAL) | SubName: Full=Diguanylate cyclase/phosphodiesterase domain 2 (EAL); | chromosome | CDS | 2061632 | 1851 | - | 0.494327 |
| NA | NE0580 | Domain of unknown function 2 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 629387 | 870 | - | 0.450575 |
| NA | NE0787 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 855289 | 270 | - | 0.474074 |
| NA | NE2330 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2530694 | 606 | - | 0.433993 |
| NA | NE0848 | Phosphoglycerate mutase family | SubName: Full=Phosphoglycerate mutase family; | chromosome | CDS | 923421 | 453 | - | 0.520971 |
| NA | NE0865 | PAS domain:Domain of unknown function 2 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 944546 | 1536 | + | 0.423177 |
| NA | NE1700 | Diguanylate cyclase/phosphodiesterase domain 2 (EAL) | SubName: Full=Diguanylate cyclase/phosphodiesterase domain 2 (EAL); | chromosome | CDS | 1830928 | 3387 | - | 0.532034 |
| NA | NE2139 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 2324120 | 963 | + | 0.531672 |
| NA | NE0729 | possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain | SubName: Full=Possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; | chromosome | CDS | 789105 | 693 | - | 0.548341 |
| NA | NE1070 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 1157077 | 969 | - | 0.579979 |
| NA | NE0049 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; EC=2.7.3.-; | chromosome | CDS | 60731 | 3690 | + | 0.518699 |
| NA | NE0837 | Domain of unknown function 2 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 915038 | 987 | - | 0.619048 |
| NA | NE1098 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 1192020 | 987 | - | 0.550152 |
| NA | NE1181 | PemK-like protein | RecName: Full=mRNA interferase; EC=3.1.-.-; | chromosome | CDS | 1279373 | 342 | - | 0.409357 |
| NA | NE1846 | HD domain | SubName: Full=HD domain; | chromosome | CDS | 1993750 | 852 | + | 0.481221 |
| NA | NE1863 | probable chemotaxis transducer | SubName: Full=Probable chemotaxis transducer; | chromosome | CDS | 2012073 | 2331 | - | 0.545689 |
| NA | NE1719 | putative anaerobic transcriptional regulatory protein | SubName: Full=Putative anaerobic transcriptional regulatory protein; | chromosome | CDS | 1854179 | 744 | - | 0.504032 |
| NA | NE0455 | Prokaryotic dksA/traR C4-type zinc finger | RecName: Full=RNA polymerase-binding transcription factor DksA; | chromosome | CDS | 496135 | 426 | - | 0.50939 |
| NA | NE0817 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 889244 | 1005 | - | 0.554229 |
| NA | NE1506 | Universal stress protein (Usp) | RecName: Full=Universal stress protein; | chromosome | CDS | 1639794 | 447 | - | 0.501119 |
| NA | NE1891 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2042272 | 195 | - | 0.492308 |
| NA | NE0548 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 592474 | 951 | + | 0.562566 |
| NA | NE1994 | TPR repeat | SubName: Full=TPR repeat; | chromosome | CDS | 2153359 | 1956 | - | 0.491309 |
| NA | NE1409 | possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain | SubName: Full=Possible phoP Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; | chromosome | CDS | 1538550 | 690 | - | 0.55942 |
| NA | NE1299 | Guanylate cyclase | SubName: Full=Guanylate cyclase; EC=4.6.1.1; | chromosome | CDS | 1420456 | 2280 | - | 0.545614 |
| NA | NE1847 | Guanylate cyclase | SubName: Full=Guanylate cyclase; | chromosome | CDS | 1994564 | 1719 | + | 0.493892 |
| NA | NE0059 | HPr(Ser) kinase | RecName: Full=HPr kinase/phosphorylase; Short=HPrK/P; EC=2.7.11.-; EC=2.7.4.-; AltName: Full=HPr(Ser) kinase/phosphorylase; | chromosome | CDS | 79491 | 972 | - | 0.503086 |
| NA | NE1085 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 1172382 | 1014 | - | 0.546351 |
| NA | NE0566 | Domain of unknown function 2:Response regulator receiver domain | SubName: Full=Uncharacterized protein; | chromosome | CDS | 615224 | 1248 | + | 0.520833 |
| NA | NE0514 | possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain | SubName: Full=Possible baeR Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; | chromosome | CDS | 552429 | 690 | - | 0.517391 |
| NA | NE1028 | Universal stress protein (Usp) | RecName: Full=Universal stress protein; | chromosome | CDS | 1115622 | 447 | + | 0.501119 |
| NA | NE0343 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; | chromosome | CDS | 382383 | 1386 | - | 0.564935 |
| NA | NE0512 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 550108 | 360 | - | 0.463889 |
| NA | NE0555 | possible transmembrane sensor | SubName: Full=Possible transmembrane sensor; | chromosome | CDS | 599368 | 930 | + | 0.504301 |
| NA | NE2434 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 2656460 | 1017 | - | 0.59882 |
| NA | NE0579 | Domain of unknown function 2 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 628508 | 789 | - | 0.465146 |
| NA | NE1154 | Domain of unknown function, DUF9:HAMP domain | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1253429 | 1668 | + | 0.491607 |
| NA | NE1397 | CheW-like domain | SubName: Full=CheW-like domain; | chromosome | CDS | 1527334 | 1524 | + | 0.559711 |
| NA | NE0317 | possible response regulator | SubName: Full=Possible response regulator; | chromosome | CDS | 350349 | 744 | - | 0.482527 |
| NA | NE1124 | atoC; response regulatory protein | SubName: Full=AtoC response regulatory protein; | chromosome | CDS | 1218822 | 1359 | + | 0.507726 |
| NA | NE0979 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 1064834 | 1044 | - | 0.556513 |
| NA | NE0937 | possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding | SubName: Full=Possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding; | chromosome | CDS | 1023190 | 738 | + | 0.48103 |
| NA | NE1974 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; EC=2.7.3.-; | chromosome | CDS | 2130981 | 2130 | + | 0.537559 |
| NA | NE0613 | bis(5'-nucleosyl)-tetraphosphatase | RecName: Full=Bis(5-nucleosyl)-tetraphosphatase, symmetrical; EC=3.6.1.41; AltName: Full=Ap4A hydrolase; AltName: Full=Diadenosine 5,5-P1,P4-tetraphosphate pyrophosphohydrolase; AltName: Full=Diadenosine tetraphosphatase; | chromosome | CDS | 666630 | 807 | - | 0.552664 |
| NA | NE1975 | NtrX; nitrogen assimilation regulatory protein | SubName: Full=NtrX nitrogen assimilation regulatory protein; | chromosome | CDS | 2133352 | 1266 | + | 0.537915 |
| NA | NE1191 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 1292139 | 1227 | - | 0.653627 |
| NA | NE0090 | Guanylate cyclase:TPR repeat:SAM domain (Sterile alpha motif) | SubName: Full=Guanylate cyclase:TPR repeat:SAM domain (Sterile alpha motif); | chromosome | CDS | 108767 | 3396 | - | 0.522674 |
| NA | NE0913 | BolA-like protein | SubName: Full=BolA-like protein; | chromosome | CDS | 995548 | 342 | + | 0.520468 |
| NA | NE1095 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 1187647 | 1032 | - | 0.568798 |
| NA | NE2334 | PhoH-like protein | SubName: Full=PhoH-like protein; | chromosome | CDS | 2533500 | 1011 | - | 0.467854 |
| NA | NE1989 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 2150245 | 1011 | - | 0.53907 |
| NA | NE0666 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; | chromosome | CDS | 721379 | 1389 | - | 0.557235 |
| NA | NE1864 | HAMP domain:Bacterial chemotaxis sensory transducer | SubName: Full=HAMP domain:Bacterial chemotaxis sensory transducer; | chromosome | CDS | 2014626 | 2259 | - | 0.544046 |
| NA | NE0542 | possible transmembrane sensor | SubName: Full=Possible transmembrane sensor; | chromosome | CDS | 585315 | 984 | + | 0.528455 |
| NA | NE1313 | Response regulator receiver domain:Helix-turn-helix Fis-type | SubName: Full=Response regulator receiver domain:Helix-turn-helix Fis-type; | chromosome | CDS | 1432854 | 534 | - | 0.520599 |
| NA | NE1408 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; | chromosome | CDS | 1537213 | 1341 | - | 0.526473 |
| NA | NE0534 | putative transmembrane sensor | SubName: Full=Putative transmembrane sensor; | chromosome | CDS | 571758 | 927 | + | 0.579288 |
| NA | NE0558 | putative transcriptional regulator, putative | SubName: Full=Putative transcriptional regulator, putative; | chromosome | CDS | 603748 | 1032 | + | 0.515504 |
| NA | NE0667 | possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain | SubName: Full=Possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; | chromosome | CDS | 722764 | 687 | - | 0.557496 |
| baeS | NE0515 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; EC=2.7.3.-; | chromosome | CDS | 553115 | 1437 | - | 0.529576 |
| cheA | NE1866 | probable chemotaxis sensor histidine kinase transcription regulator protein | SubName: Full=Probable chemotaxis sensor histidine kinase transcription regulator protein; EC=2.7.3.-; | chromosome | CDS | 2017542 | 2214 | - | 0.542909 |
| cheB | NE1859 | CheB methylesterase:Response regulator receiver domain | RecName: Full=Chemotaxis response regulator protein-glutamate methylesterase; EC=3.1.1.61; | chromosome | CDS | 2009107 | 1077 | - | 0.530176 |
| cheR | NE1861 | CheR-type MCP methyl-transferase:Generic methyl-transferase | RecName: Full=Chemotaxis protein methyltransferase; EC=2.1.1.80; | chromosome | CDS | 2010875 | 849 | - | 0.506478 |
| cheW | NE1865 | CheW-like domain | SubName: Full=CheW-like domain; | chromosome | CDS | 2016958 | 510 | - | 0.521569 |
| cheY | NE1923 | Response regulator receiver domain | SubName: Full=Response regulator receiver domain; | chromosome | CDS | 2077607 | 396 | + | 0.449495 |
| cheZ1 | NE1924 | putative chemotaxis protein CheZ | RecName: Full=Protein phosphatase CheZ; EC=3.1.3.-; AltName: Full=Chemotaxis protein CheZ; | chromosome | CDS | 2078048 | 621 | + | 0.462158 |
| cstA | NE2410 | Carbon starvation protein CstA | SubName: Full=Carbon starvation protein CstA; | chromosome | CDS | 2621327 | 2073 | - | 0.498312 |
| epsP | NE2278 | Low molecular weight phosphotyrosine protein phosphatase | SubName: Full=Low molecular weight phosphotyrosine protein phosphatase; EC=3.1.3.48; | chromosome | CDS | 2467684 | 390 | + | 0.487179 |
| fecR | NE1218 | putative FecR protein | SubName: Full=Putative FecR protein; | chromosome | CDS | 1326587 | 966 | + | 0.587992 |
| fleS | NE2082 | putative two-component sensor | SubName: Full=Putative two-component sensor; | chromosome | CDS | 2263571 | 1236 | - | 0.563916 |
| glnE | NE1329 | putative glutamate-ammonia-ligase adenylyltransferase (glutamine-synthetase adenylyltransferase) protein | RecName: Full=Glutamate-ammonia-ligase adenylyltransferase; EC=2.7.7.42; AltName: Full=Glutamine-synthetase adenylyltransferase; Short=ATase; AltName: Full=[Glutamate--ammonia-ligase] adenylyltransferase; | chromosome | CDS | 1453367 | 2790 | + | 0.54086 |
| phoB | NE2131 | possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding | SubName: Full=Possible phoB Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding; | chromosome | CDS | 2313178 | 723 | - | 0.539419 |
| phoR | NE1288 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; EC=2.7.3.-; | chromosome | CDS | 1407718 | 1359 | - | 0.51582 |
| pilG | NE1836 | Response regulator receiver domain | SubName: Full=Response regulator receiver domain; | chromosome | CDS | 1983125 | 408 | + | 0.512255 |
| pilH | NE1007 | Response regulator receiver domain | SubName: Full=Response regulator receiver domain; | chromosome | CDS | 1095273 | 366 | - | 0.494536 |
| pilI | NE1006 | CheW-like domain | SubName: Full=CheW-like domain; | chromosome | CDS | 1094754 | 513 | - | 0.491228 |
| pilJ | NE1251 | Bacterial chemotaxis sensory transducer | SubName: Full=Bacterial chemotaxis sensory transducer; | chromosome | CDS | 1369145 | 2061 | - | 0.522077 |
| pt | NE1785 | Low molecular weight phosphotyrosine protein phosphatase | SubName: Full=Low molecular weight phosphotyrosine protein phosphatase; EC=3.1.3.48; | chromosome | CDS | 1930189 | 501 | + | 0.471058 |
| ptsN | NE0060 | Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) | SubName: Full=Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); EC=2.7.1.69; | chromosome | CDS | 80449 | 471 | - | 0.501062 |
| spoT | NE0368 | spoT; bifunctional enzyme (p)ppgpp synthetase II and guanosine-3',5'-bisdiphosphate 3'-pyro | SubName: Full=SpoT bifunctional enzyme (P)ppgpp synthetase II and guanosine-3,5-bisdiphosphate 3-pyro; EC=2.7.6.5; | chromosome | CDS | 411527 | 2166 | - | 0.487996 |
| tctD | NE0344 | possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding | SubName: Full=Possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding; | chromosome | CDS | 383765 | 672 | - | 0.575893 |
| typA | NE2554 | GTP-binding elongation factor:Elongation factor Tu domain 2 | SubName: Full=GTP-binding elongation factor:Elongation factor Tu domain 2; | chromosome | CDS | 2792248 | 1815 | - | 0.558678 |
| yfhA | NE0017 | putative transcriptional regulator of two-component regulator protein | SubName: Full=Putative transcriptional regulator of two-component regulator protein; | chromosome | CDS | 20166 | 1368 | + | 0.516813 |
| yfhK | NE0015 | Sensory transduction histidine kinases | SubName: Full=Sensory transduction histidine kinases; EC=2.7.3.-; | chromosome | CDS | 18115 | 1500 | + | 0.494 |
| yxiE,n17E | NE2292 | Universal stress protein (Usp) | SubName: Full=Universal stress protein (Usp); | chromosome | CDS | 2486574 | 426 | - | 0.518779 |
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