Gene list
Applied filters:
COG category: Function unknown
Organism: Thiomicrospira denitrificans ATCC 33889, ATCC 33889
Number of genes found: 127
 | ||||||
| Hide UniProt / TrEMBL protein name | |
View in Fasta format (DNA) | |
View in Fasta format (Protein) | |
|
| ||||||
| Thiomicrospira denitrificans ATCC 33889, ATCC 33889 | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Tmden_0261 | Twin-arginine translocation pathway signal | SubName: Full=Thiosulfate-binding protein SoxY; | chromosome | CDS | 275815 | 468 | + | 0.376068 |
| NA | Tmden_1860 | putative protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1943493 | 444 | + | 0.344595 |
| NA | Tmden_1838 | Hemerythrin HHE cation binding region | SubName: Full=Hemerythrin HHE cation binding region; | chromosome | CDS | 1920380 | 438 | - | 0.36758 |
| NA | Tmden_1933 | Protein of unknown function DUF752 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2018685 | 765 | - | 0.345098 |
| NA | Tmden_1793 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1875393 | 681 | + | 0.337739 |
| NA | Tmden_1781 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1863640 | 1113 | - | 0.356694 |
| NA | Tmden_0609 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 617250 | 492 | - | 0.335366 |
| NA | Tmden_1918 | RDD protein | SubName: Full=RDD protein; | chromosome | CDS | 2000251 | 465 | + | 0.298925 |
| NA | Tmden_0114 | Protein of unknown function DUF181 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 119250 | 1611 | - | 0.379888 |
| NA | Tmden_0174 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 176198 | 1989 | - | 0.295626 |
| NA | Tmden_0344 | Protein of unknown function DUF328 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 341641 | 726 | - | 0.287879 |
| NA | Tmden_1846 | Protein of unknown function DUF475 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1929384 | 1026 | - | 0.352827 |
| NA | Tmden_0917 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 953998 | 702 | + | 0.367521 |
| NA | Tmden_1172 | Protein of unknown function DUF163 | RecName: Full=Ribosomal RNA large subunit methyltransferase H; EC=2.1.1.177; AltName: Full=23S rRNA (pseudouridine1915-N3)-methyltransferase; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH; | chromosome | CDS | 1227070 | 459 | - | 0.30719 |
| NA | Tmden_0732 | GatB/Yqey | SubName: Full=GatB/Yqey; | chromosome | CDS | 753617 | 444 | - | 0.358108 |
| NA | Tmden_1580 | Protein of unknown function UPF0126 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1656573 | 612 | + | 0.372549 |
| NA | Tmden_1202 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1268189 | 981 | - | 0.334353 |
| NA | Tmden_1561 | Metallophosphoesterase | SubName: Full=Metallophosphoesterase; | chromosome | CDS | 1634436 | 810 | - | 0.371605 |
| NA | Tmden_2032 | YceI | SubName: Full=YceI; | chromosome | CDS | 2118452 | 579 | + | 0.343696 |
| NA | Tmden_1645 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1729990 | 993 | + | 0.303122 |
| NA | Tmden_1850 | AMMECR1 | SubName: Full=AMMECR1; | chromosome | CDS | 1932522 | 573 | - | 0.364747 |
| NA | Tmden_0430 | Protein of unknown function DUF808 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 432652 | 1101 | + | 0.320618 |
| NA | Tmden_0227 | Filamentation induced by cAMP protein Fic | SubName: Full=Filamentation induced by cAMP protein Fic; | chromosome | CDS | 236979 | 1131 | - | 0.381079 |
| NA | Tmden_1370 | Protein of unknown function DUF808 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1440756 | 849 | - | 0.351001 |
| NA | Tmden_2103 | sensory box protein | SubName: Full=Sensory box protein; | chromosome | CDS | 2199948 | 966 | - | 0.364389 |
| NA | Tmden_0444 | Protein of unknown function DUF34 | RecName: Full=Putative GTP cyclohydrolase 1 type 2; EC=3.5.4.16; AltName: Full=GTP cyclohydrolase I; | chromosome | CDS | 444572 | 723 | + | 0.316736 |
| NA | Tmden_0691 | Protein of unknown function DUF262 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 702140 | 1398 | - | 0.30329 |
| NA | Tmden_2028 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2108532 | 1047 | - | 0.393505 |
| NA | Tmden_1884 | Protein of unknown function DUF344 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1964338 | 855 | - | 0.340351 |
| NA | Tmden_0412 | Protein of unknown function DUF180 | RecName: Full=Flagellar assembly factor FliW; | chromosome | CDS | 409777 | 381 | - | 0.322835 |
| NA | Tmden_1379 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1448679 | 966 | + | 0.29089 |
| NA | Tmden_1160 | SEC-C motif domain protein | SubName: Full=SEC-C motif domain protein; | chromosome | CDS | 1215642 | 447 | + | 0.340045 |
| NA | Tmden_1217 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1284178 | 390 | + | 0.305128 |
| NA | Tmden_1135 | Protein of unknown function DUF490 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1188284 | 2580 | - | 0.309302 |
| NA | Tmden_1039 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1096506 | 393 | + | 0.282443 |
| NA | Tmden_0477 | Protein of unknown function DUF323 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 480946 | 2106 | + | 0.368471 |
| NA | Tmden_0140 | Protein of unknown function DUF195 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 144244 | 1224 | - | 0.375817 |
| NA | Tmden_1252 | Protein of unknown function DUF185 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1319975 | 972 | - | 0.316872 |
| NA | Tmden_1389 | Protein of unknown function DUF28 | RecName: Full=Probable transcriptional regulatory protein Suden_1389; | chromosome | CDS | 1459410 | 711 | - | 0.337553 |
| NA | Tmden_1340 | Pseudouridylate synthase | SubName: Full=Pseudouridylate synthase; EC=4.2.1.70; | chromosome | CDS | 1411771 | 876 | - | 0.348174 |
| NA | Tmden_1481 | Antibiotic biosynthesis monooxygenase | SubName: Full=Antibiotic biosynthesis monooxygenase; | chromosome | CDS | 1553371 | 288 | - | 0.375 |
| NA | Tmden_1248 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1316798 | 960 | - | 0.321875 |
| NA | Tmden_0912 | Protein of unknown function DUF167 | RecName: Full=UPF0235 protein Suden_0912; | chromosome | CDS | 947869 | 306 | + | 0.398693 |
| NA | Tmden_0635 | Uncharacterized protein UPF0114 | SubName: Full=Uncharacterized protein UPF0114; | chromosome | CDS | 646430 | 519 | - | 0.33526 |
| NA | Tmden_1077 | OstA-like protein | SubName: Full=OstA-like protein; | chromosome | CDS | 1138952 | 501 | - | 0.329341 |
| NA | Tmden_1060 | Protein of unknown function YGGT | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1124925 | 285 | + | 0.301754 |
| NA | Tmden_0931 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 971671 | 267 | + | 0.340824 |
| NA | Tmden_1157 | Endonuclease/exonuclease/phosphatase | SubName: Full=Endonuclease/exonuclease/phosphatase; | chromosome | CDS | 1213305 | 732 | + | 0.333333 |
| NA | Tmden_1659 | Protein of unknown function DUF610, YibQ | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1742766 | 1095 | - | 0.328767 |
| NA | Tmden_0612 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 619918 | 444 | + | 0.286036 |
| NA | Tmden_0771 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 797631 | 801 | + | 0.299625 |
| NA | Tmden_1878 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1958037 | 354 | - | 0.370057 |
| NA | Tmden_2021 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2103481 | 270 | + | 0.337037 |
| NA | Tmden_1745 | Protein of unknown function DUF374 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1829510 | 624 | - | 0.358974 |
| NA | Tmden_0391 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 391281 | 423 | + | 0.345154 |
| NA | Tmden_1612 | Protein of unknown function DUF523 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1691574 | 948 | - | 0.355485 |
| NA | Tmden_0373 | Ribonuclease BN | SubName: Full=tRNA-processing RNAse BN; EC=3.1.-.-; | chromosome | CDS | 373423 | 834 | + | 0.281775 |
| NA | Tmden_0185 | Protein of unknown function DUF354 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 187149 | 1053 | - | 0.331434 |
| NA | Tmden_0138 | FlhB domain protein | SubName: Full=FlhB domain protein; | chromosome | CDS | 143741 | 252 | + | 0.380952 |
| NA | Tmden_0769 | RDD protein | SubName: Full=RDD protein; | chromosome | CDS | 795514 | 492 | - | 0.321138 |
| NA | Tmden_1861 | Protein of unknown function DUF89 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1943941 | 858 | - | 0.331002 |
| NA | Tmden_0906 | Protein of unknown function DUF465 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 938980 | 237 | + | 0.278481 |
| NA | Tmden_1717 | Protein of unknown function DUF497 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1799640 | 309 | + | 0.291262 |
| NA | Tmden_0312 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 316108 | 849 | - | 0.347468 |
| NA | Tmden_1960 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2043371 | 195 | + | 0.379487 |
| NA | Tmden_1502 | RNA-binding S4 | SubName: Full=RNA-binding S4; | chromosome | CDS | 1577330 | 204 | - | 0.343137 |
| NA | Tmden_1897 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1978506 | 483 | - | 0.349896 |
| NA | Tmden_0256 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 271797 | 465 | + | 0.329032 |
| NA | Tmden_0268 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 281651 | 906 | + | 0.346578 |
| NA | Tmden_0267 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 281195 | 435 | + | 0.333333 |
| NA | Tmden_1847 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1930460 | 318 | - | 0.371069 |
| NA | Tmden_0275 | Polyferredoxin-like | SubName: Full=Polyferredoxin-like protein; | chromosome | CDS | 291635 | 2757 | - | 0.357272 |
| NA | Tmden_1368 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1439399 | 288 | + | 0.319444 |
| NA | Tmden_0449 | Protein of unknown function DUF188 | RecName: Full=UPF0178 protein Suden_0449; | chromosome | CDS | 448210 | 456 | + | 0.339912 |
| NA | Tmden_0678 | Protein of unknown function DUF150 | RecName: Full=Ribosome maturation factor RimP; | chromosome | CDS | 691919 | 450 | + | 0.344444 |
| NA | Tmden_1788 | Protein of unknown function DUF819 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1870755 | 1131 | - | 0.355438 |
| NA | Tmden_2058 | sulfur oxidation protein | SubName: Full=Thiosulfate-binding protein SoxY; | chromosome | CDS | 2149411 | 453 | - | 0.384106 |
| NA | Tmden_1032 | Pseudouridylate synthase | RecName: Full=tRNA pseudouridine synthase D; EC=5.4.99.27; AltName: Full=tRNA pseudouridine(13) synthase; AltName: Full=tRNA pseudouridylate synthase D; AltName: Full=tRNA-uridine isomerase D; | chromosome | CDS | 1087552 | 1074 | + | 0.327747 |
| NA | Tmden_0927 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 961873 | 3747 | + | 0.371764 |
| NA | Tmden_0246 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 261123 | 1281 | - | 0.434817 |
| NA | Tmden_0335 | conserved hypothetical protein | RecName: Full=Nucleoid-associated protein Suden_0335; | chromosome | CDS | 334303 | 309 | + | 0.378641 |
| NA | Tmden_0216 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 219964 | 1365 | + | 0.383883 |
| NA | Tmden_0039 | Protein of unknown function DUF520 | RecName: Full=UPF0234 protein Suden_0039; | chromosome | CDS | 47477 | 498 | + | 0.323293 |
| NA | Tmden_1013 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1066828 | 333 | - | 0.309309 |
| NA | Tmden_0811 | Protein of unknown function UPF0150 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 844796 | 303 | + | 0.313531 |
| NA | Tmden_1479 | Protein of unknown function DUF497 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1552319 | 318 | - | 0.327044 |
| NA | Tmden_0432 | Cupin region | SubName: Full=Cupin region; | chromosome | CDS | 435360 | 354 | - | 0.38983 |
| NA | Tmden_2061 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2152685 | 447 | + | 0.324385 |
| NA | Tmden_1695 | integral membrane protein | SubName: Full=Integral membrane protein; | chromosome | CDS | 1775770 | 573 | + | 0.319372 |
| NA | Tmden_0079 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 86546 | 552 | + | 0.318841 |
| NA | Tmden_1837 | TM2 | SubName: Full=TM2; | chromosome | CDS | 1919753 | 447 | + | 0.346756 |
| NA | Tmden_0089 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 95702 | 234 | + | 0.350427 |
| NA | Tmden_0775 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 800940 | 1683 | - | 0.240048 |
| NA | Tmden_2102 | Protein of unknown function DUF1255 | RecName: Full=UPF0345 protein Suden_2102; | chromosome | CDS | 2199610 | 312 | - | 0.355769 |
| NA | Tmden_0483 | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding | SubName: Full=Pyridoxamine 5-phosphate oxidase-related, FMN-binding; | chromosome | CDS | 488873 | 429 | + | 0.34965 |
| NA | Tmden_0035 | cytoplasmic membrane protein | SubName: Full=Cytoplasmic membrane protein; | chromosome | CDS | 42048 | 372 | + | 0.362903 |
| NA | Tmden_0237 | Protein of unknown function DUF195 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 243104 | 1881 | + | 0.356725 |
| NA | Tmden_1461 | Protein of unknown function DUF208 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1532584 | 1083 | + | 0.34349 |
| NA | Tmden_0155 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 156433 | 231 | + | 0.341991 |
| NA | Tmden_1765 | DoxX | SubName: Full=DoxX; | chromosome | CDS | 1848244 | 384 | - | 0.369792 |
| NA | Tmden_1806 | DedA | SubName: Full=DedA; | chromosome | CDS | 1886066 | 612 | - | 0.361111 |
| NA | Tmden_0548 | MOSC | SubName: Full=MOSC; | chromosome | CDS | 551976 | 693 | - | 0.363636 |
| NA | Tmden_1832 | Cobalamin (vitamin B12) biosynthesis CbiX protein | SubName: Full=Cobalamin (Vitamin B12) biosynthesis CbiX protein; | chromosome | CDS | 1914913 | 351 | - | 0.336182 |
| NA | Tmden_1448 | Protein of unknown function DUF488 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1518159 | 363 | + | 0.369146 |
| NA | Tmden_1911 | conserved hypothetical protein | RecName: Full=Ribosomal RNA small subunit methyltransferase E; EC=2.1.1.193; | chromosome | CDS | 1993040 | 678 | - | 0.349558 |
| NA | Tmden_1545 | putative PAS/PAC sensor protein | SubName: Full=Putative PAS/PAC sensor protein; | chromosome | CDS | 1615684 | 1176 | + | 0.365646 |
| NA | Tmden_0077 | PDP protein | SubName: Full=PDP protein; | chromosome | CDS | 84037 | 513 | + | 0.333333 |
| NA | Tmden_0774 | Filamentation induced by cAMP protein Fic | SubName: Full=Filamentation induced by cAMP protein Fic; | chromosome | CDS | 800252 | 687 | - | 0.311499 |
| NA | Tmden_1068 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1131459 | 1233 | + | 0.330089 |
| NA | Tmden_0425 | RDD protein | SubName: Full=RDD protein; | chromosome | CDS | 426346 | 450 | + | 0.32 |
| NA | Tmden_1019 | TrkA-C | SubName: Full=TrkA-C; | chromosome | CDS | 1072367 | 1407 | + | 0.308458 |
| NA | Tmden_1000 | Zinc finger, CDGSH-type | SubName: Full=Zinc finger, CDGSH-type; | chromosome | CDS | 1051804 | 291 | - | 0.378007 |
| NA | Tmden_1805 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1885606 | 468 | - | 0.337607 |
| NA | Tmden_0458 | ATP-dependent Clp protease adaptor protein ClpS | RecName: Full=ATP-dependent Clp protease adapter protein ClpS; | chromosome | CDS | 461343 | 300 | - | 0.316667 |
| NA | Tmden_0476 | Protein of unknown function DUF152 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 480195 | 723 | - | 0.340249 |
| NA | Tmden_0539 | Protein of unknown function DUF1016 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 541922 | 1080 | + | 0.319444 |
| NA | Tmden_0666 | Protein of unknown function DUF205 | RecName: Full=Glycerol-3-phosphate acyltransferase; AltName: Full=Acyl-PO4 G3P acyltransferase; AltName: Full=Acyl-phosphate--glycerol-3-phosphate acyltransferase; AltName: Full=G3P acyltransferase; Short=GPAT; EC=2.3.1.n3; AltName: Full=Lysophosphatidic acid synthase; Short=LPA synthase; | chromosome | CDS | 680492 | 615 | - | 0.390244 |
| NA | Tmden_0493 | Hemerythrin HHE cation binding region | SubName: Full=Hemerythrin HHE cation binding region; | chromosome | CDS | 496106 | 441 | + | 0.369615 |
| NA | Tmden_1588 | Protein of unknown function DUF262 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1664737 | 1398 | - | 0.30329 |
| NA | Tmden_1859 | Alkylhydroperoxidase AhpD core | SubName: Full=Alkylhydroperoxidase AhpD core; | chromosome | CDS | 1942960 | 531 | + | 0.355932 |
| NA | Tmden_1245 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1314464 | 687 | - | 0.362445 |
| NA | Tmden_0523 | Protein of unknown function DUF37 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 522905 | 345 | + | 0.304348 |
| NA | Tmden_1309 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1379412 | 471 | + | 0.322718 |
| NA | Tmden_1756 | Iojap-related protein | RecName: Full=Ribosomal silencing factor RsfS; | chromosome | CDS | 1839316 | 336 | + | 0.330357 |
| NA | Tmden_1532 | Metallophosphoesterase | SubName: Full=Metallophosphoesterase; | chromosome | CDS | 1605281 | 738 | - | 0.296748 |
| NA | Tmden_1455 | Protein of unknown function DUF485 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1527264 | 315 | - | 0.31746 |
| NA | Tmden_1353 | Protein of unknown function DUF497 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1425777 | 294 | + | 0.289116 |
|
Beutenbergstraße 11 D-07745 Jena • Germany |
Phone: +49 3641 65-6000 Fax: +49 3641 65-6351 |
E-mail: info@leibniz-fli.de www.leibniz-fli.de |
Data Privacy Imprint |
|