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2024-05-16 10:15:14

Gene list

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COG category: General function prediction only
Organism: Helicobacter pylori J99, J99

Number of genes found: 146

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Helicobacter pylori J99, J99
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA putativeSubName: Full=Putative; chromosome CDS1440365 1660 + 0.368072
NA putativeSubName: Full=Putative; SubName: Full=Type IIG R-M system; chromosome CDS1390189 3493 - 0.396794
amiE ALIPHATIC AMIDASERecName: Full=Aliphatic amidase; EC=3.5.1.4; AltName: Full=Acylamide amidohydrolase; chromosome CDS308210 1020 + 0.456863
cagF cag island proteinSubName: Full=Cag island protein; chromosome CDS538089 807 - 0.320942
cagP cag island proteinSubName: Full=Cag island protein; chromosome CDS531505 345 - 0.315942
comEC DNA transfer proteinSubName: Full=DNA transfer protein; chromosome CDS1398329 1230 - 0.373984
dcuA ANAEROBIC C4-DICARBOXYLATE MEMBRANE TRANSPORTERRecName: Full=Anaerobic C4-dicarboxylate transporter DcuA; chromosome CDS738830 1332 - 0.456456
era GTP-binding proteinRecName: Full=GTPase Era; chromosome CDS507322 906 + 0.375276
fabG ACETYL-COENZYME A CARBOXYLASE SUBUNIT ASubName: Full=ACETYL-COENZYME A CARBOXYLASE SUBUNIT A; chromosome CDS557662 744 - 0.426075
gpt XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASESubName: Full=XANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE; chromosome CDS752991 462 - 0.400433
hypA Hydrogenase expression/formation proteinRecName: Full=Hydrogenase/urease nickel incorporation protein HypA; chromosome CDS881366 354 - 0.403955
jhp0020 putativeSubName: Full=Putative; chromosome CDS21350 1572 - 0.40458
jhp0079 putativeRecName: Full=Malate:quinone oxidoreductase; EC=1.1.5.4; AltName: Full=MQO; AltName: Full=Malate dehydrogenase [quinone]; chromosome CDS86329 1353 - 0.4102
jhp0088 putative keto-acid dehydrogenaseSubName: Full=Putative keto-acid dehydrogenase; chromosome CDS96738 945 + 0.394709
jhp0140 putativeSubName: Full=Putative; chromosome CDS155440 864 - 0.403935
jhp0148 putativeRecName: Full=Putative beta-lactamase HcpD; EC=3.5.2.6; AltName: Full=Cysteine-rich protein D; AltName: Full=Penicillin-binding protein 4; Short=PBP 4; Flags: Precursor; chromosome CDS162372 918 + 0.411765
jhp0154 putativeSubName: Full=Putative; chromosome CDS168577 264 - 0.344697
jhp0169 putativeSubName: Full=Putative; chromosome CDS184026 711 + 0.393812
jhp0191 putativeSubName: Full=Putative; chromosome CDS205463 2751 - 0.31225
jhp0197 putativeRecName: Full=Beta-lactamase HcpA; EC=3.5.2.6; AltName: Full=Cysteine-rich 28 kDa protein; Flags: Precursor; chromosome CDS214621 753 - 0.40239
jhp0204 putativeSubName: Full=Putative; chromosome CDS223802 552 - 0.411232
jhp0211 putativeSubName: Full=Putative; chromosome CDS230748 834 - 0.42446
jhp0220 putativeRecName: Full=Putative beta-lactamase HcpE; EC=3.5.2.6; AltName: Full=Cysteine-rich protein E; Flags: Precursor; chromosome CDS241987 1068 - 0.409176
jhp0235 ABC transporter, ATP-binding proteinSubName: Full=ABC transporter, ATP-binding protein; chromosome CDS255701 1551 - 0.413282
jhp0236 ABC transporter, permeaseSubName: Full=ABC transporter, permease; chromosome CDS257261 1017 - 0.437561
jhp0259 putativeRecName: Full=Uncharacterized protein jhp_0259; chromosome CDS279744 399 + 0.37594
jhp0260 putativeSubName: Full=Putative; chromosome CDS280179 1296 + 0.374228
jhp0288 putativeRecName: Full=GTPase Obg; AltName: Full=GTP-binding protein Obg; chromosome CDS318202 1083 + 0.43952
jhp0294 putativeSubName: Full=Putative; chromosome CDS323369 885 + 0.40791
jhp0297 putativeSubName: Full=Putative; chromosome CDS325561 966 + 0.415114
jhp0298 putativeSubName: Full=Putative; chromosome CDS326532 1146 - 0.404014
jhp0318 putativeSubName: Full=Putative; chromosome CDS344811 756 + 0.374339
jhp0319 putativeSubName: Full=Putative; chromosome CDS345751 339 + 0.321534
jhp0330 putativeSubName: Full=Putative; chromosome CDS359021 759 + 0.338603
jhp0346 putativeSubName: Full=Putative; chromosome CDS377523 1146 + 0.311518
jhp0380 putativeRecName: Full=Uncharacterized metallophosphoesterase jhp_0380; EC=3.1.-.-; chromosome CDS407417 1113 + 0.389039
jhp0382 putativeSubName: Full=Putative; chromosome CDS410346 1044 - 0.376437
jhp0408 putativeSubName: Full=Putative; chromosome CDS435472 609 - 0.3711
jhp0409 putative Short chain dehydrogenaseSubName: Full=Putative Short chain dehydrogenase; chromosome CDS436090 789 - 0.435995
jhp0411 putative ZINC PROTEASESubName: Full=Putative ZINC PROTEASE; chromosome CDS437791 1332 - 0.406907
jhp0448 putativeRecName: Full=Acyl-CoA thioesterase YbgC; EC=3.1.2.-; chromosome CDS484607 402 - 0.395522
jhp0449 putative transporterRecName: Full=Transporter; chromosome CDS485240 1329 + 0.382242
jhp0450 putative transporterRecName: Full=Transporter; chromosome CDS486579 1329 + 0.379985
jhp0457 putativeSubName: Full=Putative; chromosome CDS495720 639 + 0.363067
jhp0468 putativeSubName: Full=Putative; chromosome CDS509304 852 - 0.373239
jhp0499 putativeRecName: Full=Ribosomal RNA small subunit methyltransferase I; EC=2.1.1.198; AltName: Full=16S rRNA 2-O-ribose C1402 methyltransferase; AltName: Full=rRNA (cytidine-2-O-)-methyltransferase RsmI; chromosome CDS550542 870 + 0.422989
jhp0503 putativeSubName: Full=Putative; chromosome CDS553975 438 - 0.374429
jhp0514 putative Inner membrane proteinRecName: Full=UPF0118 membrane protein jhp_0514; chromosome CDS562146 1050 + 0.36
jhp0522 putativeSubName: Full=Putative; chromosome CDS569502 699 - 0.41774
jhp0535 putativeSubName: Full=Putative; chromosome CDS582756 990 + 0.384848
jhp0540 putativeSubName: Full=Putative; chromosome CDS586889 1776 + 0.316441
jhp0556 putative vacuolating cytotoxin (VacA) paralogSubName: Full=Putative vacuolating cytotoxin (VacA) paralog; chromosome CDS607948 9585 + 0.397809
jhp0571 putativeSubName: Full=Putative; chromosome CDS634833 1059 + 0.434372
jhp0573 putativeSubName: Full=Putative; chromosome CDS638201 585 - 0.441026
jhp0582 putativeRecName: Full=7-cyano-7-deazaguanine synthase; EC=6.3.4.20; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=PreQ(0) synthase; AltName: Full=Queuosine biosynthesis protein QueC; chromosome CDS646935 678 - 0.40413
jhp0599 putativeSubName: Full=Putative; chromosome CDS662016 1083 + 0.386888
jhp0601 putativeSubName: Full=Putative; chromosome CDS665903 1062 + 0.412429
jhp0602 putative PROCESSING PROTEASESubName: Full=Putative PROCESSING PROTEASE; chromosome CDS666970 1308 + 0.382263
jhp0605 putativeSubName: Full=Putative; chromosome CDS670952 1008 + 0.358135
jhp0612 putativeSubName: Full=Putative; chromosome CDS677518 1353 + 0.410939
jhp0613 putativeSubName: Full=Putative; chromosome CDS678872 3504 + 0.398116
jhp0619 putativeSubName: Full=Putative; chromosome CDS687381 768 - 0.375
jhp0620 putative LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEINSubName: Full=Putative LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN; chromosome CDS688273 948 - 0.398734
jhp0650 putativeSubName: Full=Putative; chromosome CDS728591 1221 + 0.385749
jhp0653 putative abc transporter, ATP-binding proteinSubName: Full=Putative abc transporter, ATP-binding protein; chromosome CDS731774 723 - 0.42462
jhp0654 putativeSubName: Full=Putative; chromosome CDS732509 402 - 0.395522
jhp0656 putativeSubName: Full=Putative; chromosome CDS734722 633 - 0.385466
jhp0670 putativeSubName: Full=Putative; chromosome CDS750989 579 - 0.37133
jhp0676 putativeSubName: Full=Putative; chromosome CDS756314 726 + 0.366391
jhp0678 HIT FAMILY PROTEINSubName: Full=HIT FAMILY PROTEIN; chromosome CDS758517 486 + 0.41358
jhp0683 putativeSubName: Full=Putative; chromosome CDS763522 1260 + 0.415873
jhp0684 putativeRecName: Full=tRNA (guanine-N(7)-)-methyltransferase; EC=2.1.1.33; AltName: Full=tRNA (guanine(46)-N(7))-methyltransferase; AltName: Full=tRNA(m7G46)-methyltransferase; chromosome CDS764792 1203 + 0.364921
jhp0694 putativeSubName: Full=Putative; chromosome CDS772682 879 + 0.426621
jhp0695 putativeSubName: Full=Putative; chromosome CDS773687 1314 + 0.429985
jhp0697 putativeRecName: Full=Ribonuclease Y; Short=RNase Y; EC=3.1.-.-; chromosome CDS776317 1590 - 0.430189
jhp0701 putativeSubName: Full=Putative; chromosome CDS780303 354 - 0.40678
jhp0710 putativeSubName: Full=Putative; chromosome CDS787918 1092 - 0.442308
jhp0715 putativeSubName: Full=Putative; chromosome CDS793650 684 - 0.375731
jhp0742 putativeSubName: Full=Putative; chromosome CDS822715 621 + 0.373591
jhp0749 putativeSubName: Full=Putative; chromosome CDS829352 618 + 0.411003
jhp0766 putativeSubName: Full=Putative; chromosome CDS844007 249 - 0.369478
jhp0773 putativeRecName: Full=GTPase Der; AltName: Full=GTP-binding protein EngA; chromosome CDS850700 1389 + 0.402448
jhp0789 putative abc transporter, ATP-binding proteinSubName: Full=Putative abc transporter, ATP-binding protein; chromosome CDS868894 1602 - 0.421348
jhp0797 putativeRecName: Full=Plasminogen-binding protein PgbB; chromosome CDS876571 1626 - 0.380689
jhp0817 putativeRecName: Full=Protein MurJ homolog; chromosome CDS896944 1383 + 0.38684
jhp0823 putativeRecName: Full=Probable short-chain type dehydrogenase/reductase VdlC; EC=1.-.-.-; chromosome CDS906919 816 - 0.431373
jhp0854 putativeRecName: Full=Uncharacterized protein jhp_0854; chromosome CDS943774 693 - 0.399711
jhp0858 putativeRecName: Full=Probable tautomerase jhp_0858; EC=5.3.2.-; chromosome CDS954113 207 - 0.381643
jhp0869 putativeSubName: Full=Putative; chromosome CDS961971 486 + 0.430041
jhp0886 putativeSubName: Full=Putative; chromosome CDS980798 657 + 0.400304
jhp0892 putativeSubName: Full=Putative; chromosome CDS985508 804 - 0.378109
jhp0897 putativeSubName: Full=Putative; chromosome CDS990227 681 - 0.419971
jhp0899 putativeSubName: Full=Putative; chromosome CDS991704 1503 - 0.399202
jhp0901 putativeSubName: Full=Putative; chromosome CDS994288 501 - 0.417166
jhp0926 putativeSubName: Full=Putative; chromosome CDS1022556 1017 - 0.347099
jhp0965 putativeRecName: Full=tRNA (mo5U34)-methyltransferase; EC=2.1.1.-; chromosome CDS1069022 786 - 0.374046
jhp0977 HIT FAMILY PROTEINRecName: Full=Uncharacterized HIT-like protein jhp_0977; chromosome CDS1084817 315 - 0.361905
jhp0986 putativeRecName: Full=UPF0001 protein jhp_0986; chromosome CDS1096410 669 + 0.391629
jhp0993 putativeRecName: Full=tRNA (cmo5U34)-methyltransferase; EC=2.1.1.-; chromosome CDS1103453 732 + 0.381148
jhp1018 putativeSubName: Full=Putative; chromosome CDS1129490 1038 + 0.370906
jhp1023 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome CDS1134753 753 + 0.447543
jhp1024 putativeRecName: Full=Putative beta-lactamase HcpC; EC=3.5.2.6; AltName: Full=Cysteine-rich protein C; Flags: Precursor; chromosome CDS1135716 873 - 0.430699
jhp1030 ZINC-DEPENDENT ALCOHOL DEHYDROGENASESubName: Full=ZINC-DEPENDENT ALCOHOL DEHYDROGENASE; chromosome CDS1142333 1053 + 0.412156
jhp1045 putativeSubName: Full=Putative; chromosome CDS1161319 771 - 0.373541
jhp1077 putativeSubName: Full=Putative; chromosome CDS1193599 354 - 0.39548
jhp1087 putativeRecName: Full=Endoribonuclease YbeY; EC=3.1.-.-; chromosome CDS1207235 426 - 0.42723
jhp1092 putativeSubName: Full=Putative; chromosome CDS1210206 1161 - 0.385874
jhp1102 putativeSubName: Full=Putative; chromosome CDS1222775 1308 - 0.436544
jhp1107 putative transporterSubName: Full=Putative transporter; chromosome CDS1230455 1332 + 0.413664
jhp1130 putativeSubName: Full=Putative; chromosome CDS1262671 669 - 0.381166
jhp1137 putativeSubName: Full=Putative; chromosome CDS1268884 705 - 0.387234
jhp1155 putativeRecName: Full=Uncharacterized transporter jhp_1155; chromosome CDS1286335 897 + 0.42029
jhp1159 ALIPHATIC AMIDASERecName: Full=Formamidase; EC=3.5.1.49; AltName: Full=Formamide amidohydrolase; chromosome CDS1290408 1005 + 0.462687
jhp1172 putative Peptide ABC transporter, ATP-binding proteinSubName: Full=Putative Peptide ABC transporter, ATP-binding protein; chromosome CDS1305122 1047 - 0.405922
jhp1175 putativeSubName: Full=Putative; chromosome CDS1309005 738 - 0.376694
jhp1205 putativeSubName: Full=Putative; chromosome CDS1339167 738 - 0.388889
jhp1292 putativeSubName: Full=Putative; chromosome CDS1414826 663 + 0.378582
jhp1308 putativeRecName: Full=NADPH-dependent 7-cyano-7-deazaguanine reductase; EC=1.7.1.13; AltName: Full=7-cyano-7-carbaguanine reductase; AltName: Full=NADPH-dependent nitrile oxidoreductase; AltName: Full=PreQ(0) reductase; chromosome CDS1437494 447 - 0.393736
jhp1323 putativeRecName: Full=Ribonuclease J; Short=RNase J; EC=3.1.-.-; chromosome CDS1451180 2079 + 0.435786
jhp1325 putativeRecName: Full=Dual-specificity RNA methyltransferase RlmN; EC=2.1.1.-; EC=2.1.1.192; AltName: Full=23S rRNA (adenine(2503)-C(2))-methyltransferase; AltName: Full=23S rRNA m2A2503 methyltransferase; AltName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA m2A37 methyltransferase; chromosome CDS1454228 1074 + 0.394786
jhp1344 putativeSubName: Full=Putative; chromosome CDS1471469 777 + 0.379665
jhp1366 putativeSubName: Full=Putative; chromosome CDS1498518 576 - 0.430556
jhp1372 putativeSubName: Full=Putative; chromosome CDS1503404 2526 - 0.393508
jhp1374 putativeSubName: Full=Putative; chromosome CDS1507187 798 - 0.429825
jhp1383 putativeSubName: Full=Putative; chromosome CDS1514788 1326 - 0.427602
jhp1391 putativeSubName: Full=Putative; chromosome CDS1522349 1068 + 0.367978
jhp1397 putativeSubName: Full=Putative; chromosome CDS1528923 717 - 0.3947
jhp1425 putativeSubName: Full=Putative; chromosome CDS1570280 708 + 0.368644
jhp1429 ZINC-DEPENDENT ALCOHOL DEHYDROGENASESubName: Full=ZINC-DEPENDENT ALCOHOL DEHYDROGENASE; chromosome CDS1576698 1098 + 0.440801
jhp1437 putativeSubName: Full=Putative; chromosome CDS1584853 771 + 0.355383
jhp1451 putativeSubName: Full=Putative; chromosome CDS1599459 339 + 0.427729
jhp1463 putativeSubName: Full=Putative; chromosome CDS1612696 1104 - 0.342391
jhp1474 putativeSubName: Full=Putative; chromosome CDS1625102 444 - 0.333333
jhp1475 putativeRecName: Full=Probable GTP-binding protein EngB; chromosome CDS1625555 627 - 0.382775
jhp1478 putativeSubName: Full=Putative; chromosome CDS1627303 495 - 0.416162
kgtP ALPHA-KETOGLUTARATE PERMEASESubName: Full=ALPHA-KETOGLUTARATE PERMEASE; chromosome CDS361203 1314 - 0.407154
mutT putative DGTP PYROPHOSPHOHYDROLASERecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS1281413 474 + 0.417722
orf1 putativeSubName: Full=Putative; chromosome CDS273964 1230 + 0.40813
orf16 cag island proteinSubName: Full=Cag island protein; chromosome CDS525169 1608 - 0.363806
pflA FLAGELLAR FUNCTIONAL PROTEINSubName: Full=FLAGELLAR FUNCTIONAL PROTEIN; chromosome CDS1326885 2412 + 0.385572
pheT PHENYLALANYL-TRNA SYNTHETASE BETA CHAINRecName: Full=Phenylalanine--tRNA ligase beta subunit; EC=6.1.1.20; AltName: Full=Phenylalanyl-tRNA synthetase beta subunit; Short=PheRS; chromosome CDS1086199 2295 + 0.391721
proP proline/betaine transporterSubName: Full=Proline/betaine transporter; chromosome CDS965126 1359 - 0.398087
pta PHOSPHOTRANSACETYLASERecName: Full=Phosphate acetyltransferase; EC=2.3.1.8; AltName: Full=Phosphotransacetylase; chromosome CDS920263 1560 - 0.428205
putP sodium/proline symporterSubName: Full=Sodium/proline symporter; chromosome CDS53403 1491 - 0.423206
surE STATIONARY PHASE PROTEINRecName: Full=5-nucleotidase SurE; EC=3.1.3.5; AltName: Full=Nucleoside 5-monophosphate phosphohydrolase; chromosome CDS959064 804 + 0.421642
thdF putative thiophene/furan oxidation proteinRecName: Full=tRNA modification GTPase MnmE; EC=3.6.-.-; chromosome CDS1472205 1386 + 0.396825