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2024-05-18 06:28:10

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Genomic element: chromosome

Number of genes found: 207

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Pseudomonas fluorescens Pf-5, Pf-5
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PFL_2733 hydantoin utilization protein Bchromosome CDS3019837 1746 - 0.683849
NA PFL_4989 lysine N6-hydroxylase/L-ornithine N5-oxygenase family proteinchromosome CDS5749720 1344 - 0.635417
NA PFL_3371 2-hydroxyhepta-2,4-diene-1,7-dioate isomerasechromosome CDS3892299 801 + 0.646692
NA PFL_2145 non-ribosomal peptide synthetasechromosome CDS2367819 6366 + 0.700126
NA PFL_0462 3-oxoacyl-(acyl-carrier-protein) reductase, putativechromosome CDS532413 729 - 0.674897
NA PFL_2246 isochorismatase family proteinchromosome CDS2511110 645 - 0.666667
NA PFL_6227 phytanoyl-CoA dioxygenase, PhyH familychromosome CDS7067935 822 - 0.631387
NA PFL_4472 dienelactone hydrolase family proteinchromosome CDS5182440 792 + 0.645202
NA PFL_1658 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1858330 822 + 0.517032
NA PFL_1494 conserved hypothetical proteinchromosome CDS1680523 828 + 0.655797
NA PFL_2425 conserved hypothetical proteinchromosome CDS2688953 495 - 0.662626
NA PFL_4149 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4817878 741 + 0.604588
NA PFL_0775 N-acyl-D-amino acid deacylase family proteinchromosome CDS901778 1467 + 0.687117
NA PFL_2995 methyltransferase, homologchromosome CDS3436563 867 - 0.592849
NA PFL_4927 methyltransferase, putativechromosome CDS5677129 957 + 0.637409
NA PFL_5690 biotin synthesis protein BioCchromosome CDS6485476 813 - 0.629766
NA PFL_2992 cytochrome P450 family proteinchromosome CDS3414868 1410 + 0.643262
NA PFL_4093 non-ribosomal peptide synthasechromosome CDS4725296 13233 - 0.650495
NA PFL_1008 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1154527 825 - 0.672727
NA PFL_1290 short chain dehydrogenasechromosome CDS1461222 699 - 0.629471
NA PFL_1481 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS1668041 789 + 0.657795
NA PFL_0924 toluene-tolerance proteinchromosome CDS1066239 654 + 0.571865
NA PFL_2476 hydrolase, isochorismatase familychromosome CDS2739239 642 + 0.643302
NA PFL_5551 hypothetical proteinchromosome CDS6340430 1053 + 0.678063
NA PFL_4100 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS4760451 801 + 0.667915
NA PFL_4177 conserved hypothetical proteinchromosome CDS4849756 828 + 0.648551
NA PFL_3067 3-hydroxyacyl-CoA dehydrogenase FadB2xchromosome CDS3533797 762 - 0.681102
NA PFL_1471 thioesterase family proteinchromosome CDS1656177 426 - 0.683099
NA PFL_1736 beta-ketoacyl-ACP synthase Ichromosome CDS1942076 1221 - 0.619984
NA PFL_4095 non-ribosomal peptide synthasechromosome CDS4745122 11013 - 0.663398
NA PFL_2789 polyketide synthase type Ichromosome CDS3101781 5325 + 0.667042
NA PFL_0961 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1099570 912 + 0.654605
NA PFL_0099 ABC transporter, ATP-binding proteinchromosome CDS99944 804 - 0.674129
NA PFL_2932 alcohol dehydrogenasechromosome CDS3279985 900 - 0.674444
NA PFL_4135 sigma-54 dependent transcriptional regulatorchromosome CDS4800760 1905 - 0.678215
NA PFL_2079 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2306670 768 + 0.648438
NA PFL_1405 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1585038 909 + 0.655666
NA PFL_5209 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS5965830 774 + 0.640827
NA PFL_4352 isochorismatase family proteinchromosome CDS5059904 591 + 0.637902
NA PFL_5957 PhlDchromosome CDS6769411 1050 + 0.62
NA PFL_2301 thioesterase family proteinchromosome CDS2563979 420 + 0.692857
NA PFL_3447 conserved hypothetical proteinchromosome CDS3959447 687 + 0.557496
NA PFL_4656 pyoverdine synthetase, putativechromosome CDS5373886 2874 - 0.665971
NA PFL_3382 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3903805 732 - 0.687158
NA PFL_2618 conserved hypothetical proteinchromosome CDS2895275 990 + 0.713131
NA PFL_1243 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS1413477 771 - 0.639429
NA PFL_4914 benzoate transport proteinchromosome CDS5659374 1290 + 0.655039
NA PFL_2701 phytanoyl-CoA dioxygenase, PhyH familychromosome CDS2974913 708 - 0.653955
NA PFL_5539 hydrolase, isochorismatase familychromosome CDS6324215 615 + 0.637398
NA PFL_5468 sigma-54 dependent transcriptional regulatorchromosome CDS6236908 1923 - 0.660426
NA PFL_1850 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2054255 747 - 0.655957
NA PFL_0755 benzoate transport proteinchromosome CDS880166 1209 - 0.655914
NA PFL_4737 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS5475300 858 + 0.628205
NA PFL_4926 methyltransferase, putativechromosome CDS5676389 744 + 0.639785
NA PFL_4473 EntDchromosome CDS5183325 726 + 0.641873
NA PFL_2989 nonribosomal peptide synthasechromosome CDS3367745 20028 + 0.65748
NA PFL_5756 gamma-butyrobetaine hydroxylasechromosome CDS6556199 1161 + 0.664944
NA PFL_3370 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarb oxylasechromosome CDS3891630 660 + 0.669697
NA PFL_2295 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS2557102 858 + 0.691142
NA PFL_2147 Nonribosomal peptide synthetasechromosome CDS2387602 14706 + 0.701822
NA PFL_2038 N-hydroxyarylamine O-acetyltransferase, putativechromosome CDS2265000 807 + 0.634449
NA PFL_3857 ring-hydroxylating dioxygenase, beta subunitchromosome CDS4458638 489 - 0.607362
NA PFL_3528 long-chain fatty acid--CoA ligase, putativechromosome CDS4066999 1818 - 0.654015
NA PFL_0950 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1091202 711 - 0.64557
NA PFL_4650 non-ribosomal peptide synthetase, terminal component, putativechromosome CDS5365730 2943 - 0.655454
NA PFL_2483 protease PrtAchromosome CDS2746712 1548 + 0.633721
NA PFL_0210 taurine dioxygenase, TauD/TfdA familychromosome CDS247181 906 + 0.65894
NA PFL_2630 isochorismatase family proteinchromosome CDS2907567 540 - 0.644444
NA PFL_6196 conserved hypothetical proteinchromosome CDS7034618 1758 + 0.664391
NA PFL_4091 pyoverdine ABC export system, permease/ATP-binding proteinchromosome CDS4720675 1653 + 0.631579
NA PFL_1036 toxA proteinchromosome CDS1189978 741 - 0.597841
NA PFL_3001 conserved hypothetical proteinchromosome CDS3450263 1038 - 0.66185
NA PFL_1571 hypothetical proteinchromosome CDS1769620 261 - 0.601533
NA PFL_4834 conserved hypothetical proteinchromosome CDS5577287 684 - 0.583333
NA PFL_4150 2-hydroxychromene-2-carboxylate isomerase, putativechromosome CDS4818656 597 + 0.599665
NA PFL_1882 benzoate transport proteinchromosome CDS2095196 1293 - 0.649652
NA PFL_0921 toluene tolerance ABC efflux transporter, ATP-binding proteinchromosome CDS1064154 810 + 0.625926
NA PFL_1356 conserved hypothetical proteinchromosome CDS1534207 1218 + 0.624795
NA PFL_1756 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS1962723 762 + 0.656168
NA PFL_0286 hypothetical proteinchromosome CDS332561 354 - 0.584746
NA PFL_0466 conserved hypothetical proteinchromosome CDS535283 762 - 0.641732
NA PFL_3298 conserved hypothetical proteinchromosome CDS3805419 759 - 0.694335
NA PFL_2626 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2903951 768 - 0.634115
NA PFL_1426 conserved hypothetical proteinchromosome CDS1606839 903 - 0.66113
NA PFL_0923 toluene tolerance ABC transporter, periplasmic substrate-binding proteinchromosome CDS1065760 468 + 0.549145
NA PFL_2993 nonribosomal peptide synthasechromosome CDS3416343 12492 + 0.650977
NA PFL_0034 conserved hypothetical proteinchromosome CDS36554 327 + 0.657492
NA PFL_4249 thiopurine s-methyltransferasechromosome CDS4945674 669 - 0.621824
NA PFL_2990 nonribosomal peptide synthasechromosome CDS3387942 14814 + 0.662144
NA PFL_3205 secreted hemolysin-type calcium-binding bacteriocin, putativechromosome CDS3694606 1692 - 0.634161
NA PFL_4319 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS5022220 738 + 0.643631
NA PFL_2027 conserved domain proteinchromosome CDS2252612 948 - 0.629747
NA PFL_5843 metW proteinchromosome CDS6650822 621 + 0.611916
NA PFL_2514 cytochrome P450 oxidoreductase, putativechromosome CDS2778080 1140 - 0.708772
NA PFL_0922 toluene tolerance ABC efflux transporter, permeasechromosome CDS1064963 798 + 0.591479
NA PFL_4280 permease, putativechromosome CDS4974634 2505 + 0.650299
NA PFL_0129 thioesterasechromosome CDS136014 765 - 0.665359
NA PFL_3210 protease PrtAchromosome CDS3701507 1449 - 0.609386
NA PFL_5633 membrane protein, putativechromosome CDS6414496 1446 - 0.64177
NA PFL_0100 ABC transporter, permease protein, putativechromosome CDS100744 1149 - 0.657963
NA PFL_2879 methyltransferase, putativechromosome CDS3219784 600 - 0.671667
NA PFL_0137 taurine dioxygenase, TauD/TfdA familychromosome CDS160625 888 + 0.648649
NA PFL_0274 thioesterase family proteinchromosome CDS319972 384 - 0.65625
NA PFL_4279 ABC transporter, ATP-binding proteinchromosome CDS4973951 684 + 0.643275
NA PFL_4195 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS4880770 867 + 0.662053
NA PFL_3026 methyltransferase, putativechromosome CDS3488070 624 - 0.658654
NA PFL_2162 AMP-binding domain proteinchromosome CDS2415779 1800 - 0.652778
NA PFL_5909 fumarylacetoacetate hydrolase family proteinchromosome CDS6719178 666 - 0.621622
NA PFL_3211 D-aminopeptidase putativechromosome CDS3703255 1101 - 0.669391
NA PFL_3576 3-hydroxybutyrate dehydrogenase, putativechromosome CDS4124527 774 + 0.662791
NA PFL_3361 histone deacetylase family proteinchromosome CDS3881336 1134 + 0.663139
NA PFL_0239 conserved hypothetical proteinchromosome CDS277979 660 - 0.672727
NA PFL_1155 conserved hypothetical proteinchromosome CDS1321236 783 + 0.675607
NA PFL_4103 conserved hypothetical proteinchromosome CDS4763511 462 + 0.662338
NA PFL_5988 enhancing lycopene biosynthesis protein 2chromosome CDS6808372 669 + 0.651719
NA PFL_1728 thioesterase family protein domain proteinchromosome CDS1933838 453 + 0.615894
NA PFL_1727 thioesterase family protein domain proteinchromosome CDS1933365 477 + 0.626834
NA PFL_3490 pyochelin biosynthetic protein PchC PA4229chromosome CDS4012899 780 - 0.711538
NA PFL_1270 isochorismatase family proteinchromosome CDS1441773 591 + 0.65313
NA PFL_0478 acyl carrier protein AcpCchromosome CDS547634 273 - 0.600733
NA PFL_0758 anthranilate 1,2-dioxygenase, beta subunit, putativechromosome CDS884069 492 - 0.615854
NA PFL_4711 conserved hypothetical proteinchromosome CDS5443111 1314 + 0.557078
NA PFL_5403 histone deacetylase family proteinchromosome CDS6172055 909 + 0.666667
NA PFL_2991 nonribosomal peptide synthasechromosome CDS3402752 12120 + 0.659406
NA PFL_1656 acyl carrier protein-related proteinchromosome CDS1857063 222 + 0.454955
NA PFL_2994 nonribosomal peptide synthasechromosome CDS3428900 7626 + 0.655258
NA PFL_0098 mce related protein familychromosome CDS99004 939 - 0.648562
NA PFL_2788 probable polyketide synthase type Ichromosome CDS3094356 7377 + 0.66626
NA PFL_4094 non-ribosomal peptide synthetasechromosome CDS4738541 6582 - 0.653753
NA PFL_3647 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS4214398 759 - 0.658762
NA PFL_3202 secreted hemolysin-type calcium-binding bacteriocin, putativechromosome CDS3686285 1854 - 0.642395
NA PFL_0725 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS841031 684 - 0.650585
NA PFL_5149 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS5910420 771 + 0.674449
NA PFL_2354 conserved hypothetical proteinchromosome CDS2627037 1071 - 0.614379
NA PFL_2146 arthrofactin synthetase Bchromosome CDS2374442 13164 + 0.698876
NA PFL_4072 hydrolase, isochorismatase familychromosome CDS4697615 627 - 0.623604
NA PFL_0702 lipoprotein, putativechromosome CDS814741 1620 - 0.653704
NA PFL_1745 4-hydroxybenzoyl-CoA thioesterase domain proteinchromosome CDS1952925 444 + 0.630631
NA PFL_5487 conserved hypothetical proteinchromosome CDS6261609 792 - 0.537879
NA PFL_1662 methyltransferase, FkbM family domain proteinchromosome CDS1861658 1236 + 0.567961
NA PFL_2065 methlytransferase, UbiE/COQ5 familychromosome CDS2290546 765 + 0.653595
NA PFL_2732 hydantoin utilization protein Achromosome CDS3017730 2088 - 0.688218
NA PFL_1730 dienelactone hydrolase family proteinchromosome CDS1936357 729 + 0.657064
NA PFL_2997 yersiniabactin polyketide/non-ribosomal peptide synthetase, putativechromosome CDS3439548 7068 + 0.647284
NA PFL_2762 conserved hypothetical proteinchromosome CDS3067312 780 + 0.662821
NA PFL_4097 thioesterasechromosome CDS4757632 732 - 0.670765
NA PFL_4189 non-ribosomal peptide synthasechromosome CDS4862826 13029 - 0.670351
NA PFL_2786 conserved hypothetical proteinchromosome CDS3092544 417 + 0.46283
NA PFL_3781 hypothetical proteinchromosome CDS4380519 447 + 0.563758
acoR PFL_2168 acetoin catabolism regulatory proteinchromosome CDS2423024 1869 - 0.688604
acp-2 PFL_0477 acyl carrier proteinchromosome CDS547370 255 - 0.6
acpP PFL_1797 acyl carrier proteinchromosome CDS1999684 237 + 0.50211
alkK-5 PFL_5117 medium-chain-fatty-acid--CoA ligasechromosome CDS5881643 1680 - 0.635119
aphA PFL_6145 acetylpolyamine aminohydrolasechromosome CDS6978942 1032 + 0.650194
aphA PFL_3640 acetylpolyamine aminohydrolasechromosome CDS4206279 1029 + 0.662779
aphA PFL_4136 acetylpolyamine aminohydrolasechromosome CDS4803120 1026 - 0.672515
catA PFL_3860 catechol 1,2-dioxygenasechromosome CDS4461802 930 - 0.662366
catC PFL_3861 muconolactone delta-isomerasechromosome CDS4462783 291 - 0.604811
copA PFL_2893 copper resistance protein Achromosome CDS3237717 1740 - 0.68046
cumA PFL_4929 multicopper oxidasechromosome CDS5678715 1377 - 0.641975
fabF PFL_3434 3-oxoacyl-(acyl-carrier-protein) synthase IIchromosome CDS3950291 1269 + 0.683215
fabF-1 PFL_1798 3-oxoacyl-(acyl-carrier-protein) synthase IIchromosome CDS2000031 1245 + 0.630522
fabF-2 PFL_0464 3-oxoacyl-(acyl-carrier-protein) synthase IIchromosome CDS533608 1197 - 0.6934
fabF-2 PFL_0461 3-oxoacyl-(acyl-carrier-protein) synthase IIchromosome CDS531187 1227 - 0.674817
fabG PFL_4338 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS5045650 942 - 0.629512
fabG PFL_2864 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3200344 747 + 0.651941
fabG PFL_1796 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS1998747 741 + 0.605938
fabG PFL_1364 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1542622 762 + 0.698163
fabG PFL_4842 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS5586092 759 + 0.621871
fabG PFL_0252 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS293055 741 - 0.661269
fabG-2 PFL_3223 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS3716921 762 + 0.669291
fabG-2 PFL_1365 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1543480 750 + 0.686667
fabG4 PFL_2940 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS3290975 1371 + 0.690007
fabG4 PFL_0705 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS818090 1353 - 0.692535
fadD-2 PFL_2943 long-chain-fatty-acid--CoA ligasechromosome CDS3294557 1704 + 0.633803
fadD-2 PFL_3028 long-chain fatty acid--CoA ligasechromosome CDS3489845 1692 + 0.677305
fadD-2 PFL_4599 long-chain-fatty-acid--CoA ligasechromosome CDS5307807 1689 - 0.618117
fadD-2 PFL_4598 long-chain-fatty-acid-CoA ligasechromosome CDS5305775 1692 - 0.60461
fadD-6 PFL_1472 long-chain-fatty-acid--CoA ligasechromosome CDS1656949 1704 + 0.669601
fadD24 PFL_0261 pyoverdine synthetasechromosome CDS305433 1863 + 0.651637
fadD35 PFL_3935 AMP-binding family proteinchromosome CDS4546646 1704 - 0.638498
fadD6 PFL_4344 fadD6chromosome CDS5051027 2214 - 0.62963
fahA PFL_0968 fumarylacetoacetasechromosome CDS1109802 1305 + 0.668966
hmgA PFL_0967 homogentisate 1,2-dioxygenasechromosome CDS1108494 1305 + 0.649808
hpaB PFL_3356 4-hydroxyphenylacetate 3-monooxygenase, oxygenase componentchromosome CDS3875665 1563 + 0.644274
hpaH PFL_3376 2-oxo-hepta-3-ene-1,7-dioate hydratasechromosome CDS3897373 804 + 0.649254
hutI PFL_0409 imidazolonepropionasechromosome CDS471957 1206 + 0.655058
nirK PFL_5501 copper-containing nitrite reductasechromosome CDS6280447 1089 - 0.651974
paaD PFL_3131 phenylacetic acid degradation protein PaaDchromosome CDS3602963 450 + 0.68
paaH PFL_3134 phenylacetate-CoA oxygenase, PaaH subunitchromosome CDS3606192 282 + 0.656028
pcaG PFL_1321 protocatechuate 3,4-dioxygenase, alpha subunitchromosome CDS1495123 567 + 0.654321
pcaG PFL_5395 protocatechuate 3,4-dioxygenase, alpha subunitchromosome CDS6165388 606 - 0.630363
pcaH PFL_1320 protocatechuate 3,4-dioxygenase, beta subunitchromosome CDS1494417 705 + 0.649645
pcaH PFL_5396 protocatechuate 3,4-dioxygenase, beta subunitchromosome CDS6166004 720 - 0.640278
pchA PFL_3488 isochorismate synthasechromosome CDS4011135 1425 - 0.709474
pchD PFL_3496 2,3-dihydroxybenzoate-AMP ligasechromosome CDS4027168 1668 - 0.68765
pchE PFL_3493 pyochelin synthetase Echromosome CDS4020207 3471 - 0.706137
pchF PFL_3492 pyochelin synthetase Fchromosome CDS4014787 5424 - 0.692662
pksP PFL_0264 polyketide synthasechromosome CDS309241 321 + 0.551402
pltF PFL_2792 non-ribosomal peptide synthetase, terminal component, putativechromosome CDS3109931 1497 + 0.659319
pltG PFL_2793 CFA synthetase, thioesterase componentchromosome CDS3111431 783 + 0.659004
pncA PFL_2466 pyrazinamidase/nicotinamidasechromosome CDS2728922 648 + 0.634259
pvdA PFL_4079 L-ornithine 5-monooxygenasechromosome CDS4706381 1338 - 0.629297
rrmA PFL_1164 ribosomal RNA large subunit methyltransferase Achromosome CDS1331813 810 - 0.685185
smtA PFL_0683 SmtA proteinchromosome CDS795398 750 + 0.66
tauD PFL_0269 alpha-ketoglutarate-dependent taurine dioxygenasechromosome CDS314267 840 - 0.647619
xylL PFL_3855 cis-1,2-dihydroxycyclohexa-3, 5-diene-1-carboxylate dehydrogenasechromosome CDS4456588 774 - 0.684755