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2024-05-07 22:16:19

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Pseudomonas syringae pv. tomato str. DC3000, DC3000

Number of genes found: 142

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Pseudomonas syringae pv. tomato str. DC3000, DC3000
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSPTO1914 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2093986 723 + 0.605809
NA PSPTO1119 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1232891 789 - 0.61597
NA PSPTO3046 sigma-54 dependent transcriptional regulatorchromosome CDS3425886 2004 - 0.59481
NA PSPTO2147 pyoverdine sidechain peptide synthetase I, epsilon-Lys modulechromosome CDS2330649 3315 + 0.644646
NA PSPTO5110 3-oxoacyl-(acyl-carrier-protein) synthase II, putativechromosome CDS5809899 1227 + 0.620212
NA PSPTO2148 pyoverdine sidechain peptide synthetase II, D-Asp-L-Thr componentchromosome CDS2333960 7878 + 0.614369
NA PSPTO4082 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4592224 735 + 0.598639
NA PSPTO4286 conserved hypothetical proteinchromosome CDS4825598 1221 - 0.570025
NA PSPTO0743 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS789523 1356 - 0.643068
NA PSPTO2134 pyoverdine synthetase, thioesterase componentchromosome CDS2307009 747 + 0.630522
NA PSPTO2216 4-hydroxybenzoyl-CoA thioesterase domain proteinchromosome CDS2441051 444 + 0.623874
NA PSPTO2097 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2266931 750 - 0.630667
NA PSPTO3054 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3435263 732 + 0.607924
NA PSPTO2758 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3073084 747 + 0.605087
NA PSPTO4519 non-ribosomal peptide synthetase, terminal componentchromosome CDS5093815 10299 + 0.58996
NA PSPTO5105 conserved hypothetical proteinchromosome CDS5806331 720 + 0.604167
NA PSPTO4084 mannuronan C-5-epimerase, putativechromosome CDS4594116 4833 + 0.608525
NA PSPTO5107 3-oxoacyl-(acyl-carrier-protein) synthase II, putativechromosome CDS5807526 1197 + 0.643275
NA PSPTO4446 membrane protein, putativechromosome CDS5011780 798 - 0.578947
NA PSPTO4263 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4802393 774 - 0.542636
NA PSPTO3914 copper resistance protein Achromosome CDS4428608 1770 + 0.60678
NA PSPTO2830 non-ribosomal peptide synthetase, terminal componentchromosome CDS3162382 17790 + 0.64362
NA PSPTO4445 mce-related proteinchromosome CDS5011313 468 - 0.57265
NA PSPTO3741 sigma-54 dependent transcriptional regulatorchromosome CDS4225753 1854 + 0.593312
NA PSPTO0326 conserved hypothetical proteinchromosome CDS355873 384 - 0.625
NA PSPTO1183 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1295825 711 - 0.600563
NA PSPTO1627 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1783328 816 + 0.596814
NA PSPTO1056 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1152922 765 + 0.579085
NA PSPTO1354 isochorismatase family proteinchromosome CDS1491241 678 - 0.617994
NA PSPTO3073 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3455936 759 + 0.604743
NA PSPTO1726 hypothetical proteinchromosome CDS1895010 315 - 0.498413
NA PSPTO5198 dioxygenase, TauD/TfdA familychromosome CDS5916711 897 - 0.605351
NA PSPTO5190 conserved hypothetical proteinchromosome CDS5906379 624 + 0.633013
NA PSPTO1919 hypothetical proteinchromosome CDS2101530 726 - 0.601928
NA PSPTO1223 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1340384 819 - 0.622711
NA PSPTO1187 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1298852 921 + 0.614549
NA PSPTO2039 isochorismatase family proteinchromosome CDS2222263 591 - 0.620981
NA PSPTO1861 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2034565 813 - 0.601476
NA PSPTO3193 metalloprotease, putativechromosome CDS3584534 1608 - 0.576493
NA PSPTO5537 conserved hypothetical proteinchromosome CDS6305268 1758 + 0.62116
NA PSPTO1913 conserved hypothetical proteinchromosome CDS2093596 297 + 0.531987
NA PSPTO1009 isochorismatase family proteinchromosome CDS1102902 627 - 0.580542
NA PSPTO5109 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS5809171 729 + 0.625514
NA PSPTO2397 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2646227 765 - 0.640523
NA PSPTO5457 aliphatic amino acid carboxylate reductase, putativechromosome CDS6209553 3450 + 0.592174
NA PSPTO5292 fumarylacetoacetate hydrolase family proteinchromosome CDS6017891 666 - 0.606607
NA PSPTO2396 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2645396 801 - 0.614232
NA PSPTO2209 dienelactone hydrolase family proteinchromosome CDS2433990 729 + 0.59808
NA PSPTO4707 coronafacic acid synthetase, acyl carrier protein component, putativechromosome CDS5333913 231 + 0.506494
NA PSPTO2677 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2972883 861 + 0.598142
NA PSPTO0812 hypothetical proteinchromosome CDS876364 516 + 0.604651
NA PSPTO_B0013 conserved hypothetical proteinpDC3000B CDS14664 783 - 0.606641
NA PSPTO5094 acyl carrier protein, putativechromosome CDS5794849 261 + 0.551724
NA PSPTO3133 methyltransferase, putativechromosome CDS3523298 627 + 0.617225
NA PSPTO2031 benzoate transport C-terminal domain proteinchromosome CDS2218103 492 - 0.605691
NA PSPTO2149 pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser componentchromosome CDS2341852 6456 + 0.619114
NA PSPTO0667 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS720816 771 - 0.566796
NA PSPTO1677 dienelactone hydrolase family proteinchromosome CDS1848378 789 - 0.604563
NA PSPTO4200 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4731544 750 - 0.637333
NA PSPTO2150 pyoverdine sidechain peptide synthetase IV, D-Asp-L-Ser componentchromosome CDS2348309 8628 + 0.62216
NA PSPTO1522 rRNA large subunit methyltransferase A, putativechromosome CDS1678151 810 - 0.645679
NA PSPTO2723 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3022420 768 - 0.574219
NA PSPTO1859 isochorismatase family proteinchromosome CDS2033359 546 + 0.558608
NA PSPTO5117 N-acyl-D-amino acid deacylase family proteinchromosome CDS5817929 1515 + 0.631023
NA PSPTO2961 L-lysine 6-monooxygenase, putativechromosome CDS3329849 1323 - 0.625094
NA PSPTO0766 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS814913 726 - 0.596419
NA PSPTO3809 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4316872 726 - 0.643251
NA PSPTO4212 methyltransferase, putativechromosome CDS4746148 744 + 0.594086
NA PSPTO1740 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1908427 741 - 0.620783
NA PSPTO4518 non-ribosomal peptide synthetase, initiating componentchromosome CDS5088445 5262 + 0.580198
NA PSPTO3428 conserved domain proteinchromosome CDS3864581 459 + 0.555556
NA PSPTO4699 non-ribosomal peptide synthetase, terminal componentchromosome CDS5313602 13596 - 0.593116
NA PSPTO4662 histone deacetylase family proteinchromosome CDS5265421 918 + 0.624183
NA PSPTO4444 toluene tolerance protein, putativechromosome CDS5010633 651 - 0.56682
NA PSPTO4372 conserved hypothetical proteinchromosome CDS4934495 681 - 0.544787
NA PSPTO1356 isochorismatase family proteinchromosome CDS1493453 687 - 0.63901
NA PSPTO5093 acyl carrier protein, putativechromosome CDS5794585 261 + 0.586207
NA PSPTO4201 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4732325 762 - 0.656168
NA PSPTO1156 isochorismatase family proteinchromosome CDS1269514 741 - 0.614035
NA PSPTO4177 2-hydroxychromene-2-carboxylate isomerase family proteinchromosome CDS4706341 648 - 0.584877
NA PSPTO0163 conserved hypothetical proteinchromosome CDS182751 333 - 0.600601
NA PSPTO2492 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS2755531 801 + 0.617977
NA PSPTO5578 conserved hypothetical proteinchromosome CDS6356934 681 + 0.512482
NA PSPTO4380 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4941398 759 + 0.57444
NA PSPTO2266 permease, putativechromosome CDS2509214 2517 - 0.643623
NA PSPTO2267 ABC transporter, ATP-binding proteinchromosome CDS2511730 684 - 0.630117
NA PSPTO2949 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3313545 768 - 0.617188
NA PSPTO2098 isochorismatase family proteinchromosome CDS2267792 567 + 0.608466
NA PSPTO1515 conserved hypothetical proteinchromosome CDS1672410 864 + 0.622685
NA PSPTO4261 isomerase, putativechromosome CDS4801007 699 - 0.503577
NA PSPTO2829 non-ribosomal peptide synthetasechromosome CDS3152879 9507 + 0.63469
NA PSPTO4067 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS4573831 897 - 0.492754
NA PSPTO2602 yersiniabactin non-ribosomal peptide synthetasechromosome CDS2884461 6174 - 0.634111
NA PSPTO3713 conserved hypothetical proteinchromosome CDS4189956 762 - 0.643045
NA PSPTO3332 protease PrtAchromosome CDS3768937 1428 - 0.577731
NA PSPTO1675 siderophore biosynthesis protein, putativechromosome CDS1846677 645 - 0.635659
NA PSPTO2614 dioxygenase, TauD/TfdA familychromosome CDS2904461 840 + 0.577381
NA PSPTO4213 methyltransferase, putativechromosome CDS4746888 960 + 0.602083
NA PSPTO2801 prolidase, putativechromosome CDS3122263 1260 - 0.625397
NA PSPTO2981 isochorismatase family proteinchromosome CDS3350706 684 - 0.55848
NA PSPTO2806 dienelactone hydrolase family proteinchromosome CDS3130139 888 - 0.609234
NA PSPTO4447 toluene tolerance ABC transporter, ATP-binding protein, putativechromosome CDS5012577 810 - 0.6
acpP PSPTO3831 acyl carrier proteinchromosome CDS4339190 237 - 0.510549
alkK PSPTO1148 medium-chain-fatty-acid--CoA ligasechromosome CDS1257917 1683 + 0.585859
bioC PSPTO0497 biotin synthesis protein BioCchromosome CDS544061 810 + 0.633333
cfa1 PSPTO4681 coronafacic acid synthetase, acyl carrier protein componentchromosome CDS5284213 252 + 0.587302
cfa3 PSPTO4683 coronafacic acid beta-ketoacyl synthetase componentchromosome CDS5284967 1146 + 0.670157
cfa5 PSPTO4685 coronafacic acid synthetase, ligase componentchromosome CDS5286639 1419 + 0.649049
cfa6 PSPTO4686 coronafacic acid polyketide synthase Ichromosome CDS5287945 8160 + 0.67598
cfa7 PSPTO4687 coronafacic acid polyketide synthetase IIchromosome CDS5296110 6201 + 0.680374
cfa9 PSPTO4690 CFA synthetase, thioesterase componentchromosome CDS5304061 744 + 0.592742
cfl PSPTO4680 coronafacic acid synthetase, ligase componentchromosome CDS5282597 1530 + 0.624183
cmaA PSPTO4709 coronamic acid synthetase, alloisoleucine ligase componentchromosome CDS5334999 1788 + 0.568792
cmaT PSPTO4712 coronamic acid synthetase, thioesterase componentchromosome CDS5338144 762 + 0.581365
cumA PSPTO1456 multicopper oxidasechromosome CDS1600668 1374 + 0.611354
elbB PSPTO5253 enhancing lycopene biosynthesis protein 2chromosome CDS5973609 669 + 0.596413
fabB PSPTO2210 3-oxoacyl-(acyl-carrier-protein) synthase Ichromosome CDS2434906 1224 - 0.602941
fabF PSPTO3830 3-oxoacyl-(acyl-carrier-protein) synthase IIchromosome CDS4337832 1245 - 0.613655
fabG PSPTO3832 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS4339619 744 - 0.567204
fadD-1 PSPTO4097 long-chain-fatty-acid--CoA ligasechromosome CDS4616449 1692 - 0.576832
fadD-2 PSPTO4098 long-chain-fatty-acid--CoA ligasechromosome CDS4618496 1689 - 0.587922
fahA PSPTO3550 fumarylacetoacetasechromosome CDS4005909 1296 - 0.634259
fcs PSPTO2941 feruloyl-CoA-synthetasechromosome CDS3303977 1770 - 0.621469
hmgA PSPTO3551 homogentisate 1,2-dioxygenasechromosome CDS4007204 1305 - 0.602299
hss PSPTO1868 homospermidine synthasechromosome CDS2041244 1413 - 0.547771
hutI PSPTO5277 imidazolonepropionasechromosome CDS6001372 1206 + 0.629353
irp1 PSPTO2600 yersiniabactin polyketide/non-ribosomal peptide synthetasechromosome CDS2873730 9522 - 0.643247
irp3 PSPTO2599 yersiniabactin synthetase, thiazolinyl reductase componentchromosome CDS2872651 1083 - 0.65651
irp4 PSPTO2598 yersiniabactin synthetase, thioesterase componentchromosome CDS2871864 816 - 0.63848
irp5 PSPTO2597 yersiniabactin synthetase, salycilate ligase componentchromosome CDS2870283 1569 - 0.657106
iucD PSPTO0211 L-lysine 6-monooxygenasechromosome CDS236402 1284 - 0.592679
metW PSPTO5050 metW proteinchromosome CDS5749494 621 + 0.602254
pcaG PSPTO2339 protocatechuate 3,4-dioxygenase, alpha subunitchromosome CDS2592428 603 + 0.595357
pcaH PSPTO2338 protocatechuate 3,4-dioxygenase, beta subunitchromosome CDS2591697 720 + 0.6
pchA PSPTO2595 isochorismate synthasechromosome CDS2868541 1410 - 0.631915
pncA PSPTO3295 pyrazinamidase/nicotinamidasechromosome CDS3726505 651 + 0.628264
polS PSPTO0363 sorbitol dehydrogenasechromosome CDS397298 774 - 0.603359
psyI PSPTO3864 autoinducer synthesis protein PsyIchromosome CDS4377652 735 - 0.553742
pvdE PSPTO2153 pyoverdine ABC transporter, ATP-binding/permease proteinchromosome CDS2362311 1665 - 0.61982
pvsA PSPTO2135 pyoverdine chromophore precursor synthetasechromosome CDS2307860 13011 + 0.633541
smtA PSPTO0740 smtA proteinchromosome CDS787469 666 - 0.624625
tpm PSPTO1777 thiopurine s-methyltransferasechromosome CDS1946642 663 + 0.604827