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2024-04-29 18:39:15

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Rhodopseudomonas palustris BisB18, BisB18

Number of genes found: 216

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Rhodopseudomonas palustris BisB18, BisB18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RPC_4685 Secretion protein HlyDchromosome CDS5244374 939 + 0.684771
NA RPC_2353 Phenylacetic acid degradation-related proteinchromosome CDS2556468 399 + 0.679198
NA RPC_4693 cytochrome P450chromosome CDS5255202 1383 + 0.672451
NA RPC_1991 secretion protein HlyDchromosome CDS2165986 915 - 0.639344
NA RPC_3151 DSBA oxidoreductasechromosome CDS3494709 621 - 0.657005
NA RPC_4205 conserved hypothetical proteinchromosome CDS4676304 726 + 0.625344
NA RPC_0749 Tetratricopeptide TPR_2chromosome CDS826038 927 - 0.695793
NA RPC_4616 secretion protein HlyDchromosome CDS5154488 1245 + 0.684337
NA RPC_1135 short-chain dehydrogenase/reductase SDRchromosome CDS1235906 789 - 0.681876
NA RPC_2281 short-chain dehydrogenase/reductase SDRchromosome CDS2480721 774 - 0.717054
NA RPC_4209 short-chain dehydrogenase/reductase SDRchromosome CDS4681217 744 - 0.596774
NA RPC_2730 secretion protein HlyDchromosome CDS2966496 1167 - 0.655527
NA RPC_3042 ABC transporter relatedchromosome CDS3367091 1836 + 0.617102
NA RPC_3032 Amino acid adenylationchromosome CDS3331379 5655 - 0.632714
NA RPC_0430 ABC transporter relatedchromosome CDS464837 906 + 0.690949
NA RPC_2048 AMP-dependent synthetase and ligasechromosome CDS2227418 1551 + 0.654417
NA RPC_4615 acriflavin resistance proteinchromosome CDS5151313 3186 + 0.645637
NA RPC_3394 O-methyltransferase, family 3chromosome CDS3778194 666 + 0.681682
NA RPC_2301 acyl carrier proteinchromosome CDS2501056 240 + 0.566667
NA RPC_4664 ABC transporter relatedchromosome CDS5216824 2784 - 0.660201
NA RPC_2729 Hydrophobe/amphiphile efflux-1 HAE1chromosome CDS2963367 3111 - 0.64288
NA RPC_0682 Phenylacetic acid degradation protein PaaDchromosome CDS744482 477 + 0.696017
NA RPC_2052 Amino acid adenylationchromosome CDS2232947 3312 + 0.66093
NA RPC_3650 short-chain dehydrogenase/reductase SDRchromosome CDS4060635 798 + 0.636591
NA RPC_4714 isochorismatase hydrolasechromosome CDS5275265 576 + 0.699653
NA RPC_3222 Secretion protein HlyDchromosome CDS3570987 987 - 0.694022
NA RPC_0861 AMP-dependent synthetase and ligasechromosome CDS948880 1545 + 0.652427
NA RPC_3210 ABC transporter relatedchromosome CDS3555418 1764 + 0.662698
NA RPC_2037 Secretion protein HlyDchromosome CDS2219176 1341 + 0.668904
NA RPC_4216 short-chain dehydrogenase/reductase SDRchromosome CDS4690861 765 + 0.657516
NA RPC_4476 short-chain dehydrogenase/reductase SDRchromosome CDS4978699 921 - 0.667752
NA RPC_3221 acriflavin resistance proteinchromosome CDS3567784 3207 - 0.663548
NA RPC_4636 secretion protein HlyDchromosome CDS5182552 1212 - 0.667492
NA RPC_3247 short-chain dehydrogenase/reductase SDRchromosome CDS3596204 852 - 0.660798
NA RPC_2036 ABC transporter relatedchromosome CDS2217561 1635 + 0.677676
NA RPC_3595 secretion protein HlyDchromosome CDS3995954 1215 + 0.618107
NA RPC_2300 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS2500029 738 + 0.650406
NA RPC_1927 ABC transporter relatedchromosome CDS2098162 1848 + 0.65368
NA RPC_3283 ABC transporter relatedchromosome CDS3633574 921 + 0.631922
NA RPC_1719 amine oxidasechromosome CDS1865265 1257 + 0.693715
NA RPC_1025 Benzoate-CoA ligase familychromosome CDS1123829 1575 - 0.63873
NA RPC_1536 Carotenoid oxygenasechromosome CDS1672584 1404 - 0.661681
NA RPC_3586 secretion protein HlyDchromosome CDS3989493 1110 - 0.667568
NA RPC_2559 acriflavin resistance proteinchromosome CDS2776376 3129 + 0.67178
NA RPC_4074 AMP-dependent synthetase and ligasechromosome CDS4527254 1686 + 0.618031
NA RPC_2612 putative acid-CoA ligasechromosome CDS2844987 1530 - 0.678431
NA RPC_2498 acriflavin resistance proteinchromosome CDS2709323 3126 + 0.653871
NA RPC_3024 secretion protein HlyDchromosome CDS3323123 1092 - 0.667582
NA RPC_2047 hypothetical proteinchromosome CDS2227138 270 + 0.555556
NA RPC_0988 Phosphatidylethanolamine N-methyltransferasechromosome CDS1081824 639 + 0.657277
NA RPC_2196 short-chain dehydrogenase/reductase SDRchromosome CDS2396116 759 + 0.679842
NA RPC_1444 Phosphatidylethanolamine N-methyltransferasechromosome CDS1571040 660 + 0.666667
NA RPC_1676 AMP-dependent synthetase and ligasechromosome CDS1809267 1581 - 0.681847
NA RPC_3037 secretion protein HlyDchromosome CDS3360391 1035 + 0.656039
NA RPC_4513 ABC transporter relatedchromosome CDS5031739 1689 - 0.623446
NA RPC_1963 sigma54 specific transcriptional regulator with GAF sensor, Fis familychromosome CDS2134431 1944 - 0.704218
NA RPC_1289 FAD dependent oxidoreductasechromosome CDS1402776 1551 - 0.696325
NA RPC_0245 AMP-dependent synthetase and ligasechromosome CDS258610 1515 + 0.654125
NA RPC_1231 short-chain dehydrogenase/reductase SDRchromosome CDS1347264 858 + 0.651515
NA RPC_1291 O-methyltransferase, family 2chromosome CDS1405332 1146 + 0.665794
NA RPC_3478 short-chain dehydrogenase/reductase SDRchromosome CDS3863740 768 - 0.644531
NA RPC_1651 acriflavin resistance proteinchromosome CDS1783800 3081 + 0.635833
NA RPC_3036 Amino acid adenylationchromosome CDS3347539 12498 - 0.641623
NA RPC_0959 Phenylacetic acid degradation-related proteinchromosome CDS1053297 510 - 0.688235
NA RPC_1650 secretion protein HlyDchromosome CDS1782449 1194 + 0.654104
NA RPC_2180 secretion protein HlyDchromosome CDS2373394 1227 + 0.690302
NA RPC_3369 Amino acid adenylationchromosome CDS3737026 6948 + 0.699626
NA RPC_0885 acriflavin resistance proteinchromosome CDS976352 3162 - 0.664453
NA RPC_0248 ABC transporter relatedchromosome CDS261906 810 + 0.688889
NA RPC_1677 short-chain dehydrogenase/reductase SDRchromosome CDS1811773 873 - 0.657503
NA RPC_4181 Methyltransferase type 11chromosome CDS4646162 720 - 0.640278
NA RPC_3368 Amino acid adenylationchromosome CDS3733827 3180 + 0.683962
NA RPC_0509 Methyltransferase type 11chromosome CDS548494 774 + 0.698966
NA RPC_0186 short-chain dehydrogenase/reductase SDRchromosome CDS202892 747 - 0.701473
NA RPC_2695 Phenylacetic acid degradation-related proteinchromosome CDS2923530 432 + 0.622685
NA RPC_2370 secretion protein HlyDchromosome CDS2570641 1035 - 0.681159
NA RPC_0246 short-chain dehydrogenase/reductase SDRchromosome CDS260219 807 + 0.685254
NA RPC_3365 Thioesterasechromosome CDS3730966 858 - 0.680653
NA RPC_3288 FAD dependent oxidoreductasechromosome CDS3639185 1614 + 0.679678
NA RPC_4783 Methyltransferase FkbMchromosome CDS5343706 798 + 0.649123
NA RPC_2302 beta-ketoacyl synthasechromosome CDS2501393 1266 + 0.665087
NA RPC_1356 secretion protein HlyDchromosome CDS1478419 1098 + 0.701275
NA RPC_1868 secretion protein HlyDchromosome CDS2033319 1218 - 0.647783
NA RPC_3649 short-chain dehydrogenase/reductase SDRchromosome CDS4059775 735 + 0.704762
NA RPC_3795 short-chain dehydrogenase/reductase SDRchromosome CDS4219877 783 + 0.67433
NA RPC_0348 beta-ketoacyl synthasechromosome CDS369560 1227 - 0.654442
NA RPC_2053 Amino acid adenylationchromosome CDS2236255 3213 + 0.661687
NA RPC_0891 Homogentisate 1,2-dioxygenasechromosome CDS985316 1347 + 0.657016
NA RPC_2405 Methyltransferase FkbMchromosome CDS2607504 966 + 0.635611
NA RPC_2108 beta-ketoacyl synthasechromosome CDS2309771 1281 - 0.677596
NA RPC_0892 fumarylacetoacetasechromosome CDS986662 1266 + 0.681675
NA RPC_2796 acriflavin resistance proteinchromosome CDS3035885 3180 - 0.656604
NA RPC_4280 Methionine biosynthesis MetWchromosome CDS4777699 669 - 0.64275
NA RPC_1350 AMP-dependent synthetase and ligasechromosome CDS1470289 1524 + 0.664042
NA RPC_3828 secretion protein HlyDchromosome CDS4258151 1293 - 0.685228
NA RPC_1826 hypothetical proteinchromosome CDS1980036 864 - 0.556713
NA RPC_1902 secretion protein HlyDchromosome CDS2072750 1230 + 0.688618
NA RPC_0739 O-methyltransferase, family 3chromosome CDS813910 696 - 0.622126
NA RPC_4602 AMP-dependent synthetase and ligasechromosome CDS5135687 1512 + 0.700397
NA RPC_1275 putative methyltransferasechromosome CDS1391033 705 + 0.692199
NA RPC_0205 heme exporter protein CcmAchromosome CDS225878 606 + 0.724422
NA RPC_3165 short-chain dehydrogenase/reductase SDRchromosome CDS3509495 771 + 0.675746
NA RPC_3421 short-chain dehydrogenase/reductase SDRchromosome CDS3808326 795 - 0.671698
NA RPC_3088 short-chain dehydrogenase/reductase SDRchromosome CDS3428656 915 - 0.654645
NA RPC_1939 conserved hypothetical proteinchromosome CDS2108368 627 + 0.626794
NA RPC_2045 4'-phosphopantetheinyl transferasechromosome CDS2225196 684 - 0.611111
NA RPC_0487 secretion protein HlyDchromosome CDS527107 1164 - 0.658076
NA RPC_1146 MATE efflux family proteinchromosome CDS1246328 1410 - 0.710638
NA RPC_3606 sigma54 specific transcriptional regulator with GAF sensor, Fis familychromosome CDS4009994 1944 - 0.673868
NA RPC_1357 acriflavin resistance proteinchromosome CDS1479531 3141 + 0.659663
NA RPC_2111 phosphopantetheine-bindingchromosome CDS2312763 285 - 0.603509
NA RPC_2390 Twin-arginine translocation pathway signalchromosome CDS2592337 1326 - 0.721719
NA RPC_2822 conserved hypothetical proteinchromosome CDS3064362 603 - 0.668325
NA RPC_3310 conserved hypothetical proteinchromosome CDS3668528 300 + 0.68
NA RPC_3499 O-methyltransferase, family 3chromosome CDS3888704 696 - 0.614943
NA RPC_3013 short-chain dehydrogenase/reductase SDRchromosome CDS3309436 762 - 0.628609
NA RPC_2497 secretion protein HlyDchromosome CDS2708189 1131 + 0.668435
NA RPC_0797 ABC transporter, ATP-binding/permease proteinchromosome CDS882109 1899 + 0.686677
NA RPC_0851 AMP-dependent synthetase and ligasechromosome CDS938749 1554 + 0.657014
NA RPC_3038 ABC transporter relatedchromosome CDS3361422 1767 + 0.612337
NA RPC_1261 amine oxidasechromosome CDS1377336 1536 + 0.628255
NA RPC_2094 ABC transporter relatedchromosome CDS2293393 1986 + 0.646526
NA RPC_1347 5-carboxymethyl-2-hydroxymuconatedelta-isomerasechromosome CDS1468558 843 - 0.653618
NA RPC_3480 short-chain dehydrogenase/reductase SDRchromosome CDS3865443 846 + 0.686761
NA RPC_3023 acriflavin resistance proteinchromosome CDS3320043 3084 - 0.652075
NA RPC_1542 DSBA oxidoreductasechromosome CDS1678989 675 + 0.685926
NA RPC_2966 short-chain dehydrogenase/reductase SDRchromosome CDS3246258 765 - 0.667974
NA RPC_1862 Thioesterasechromosome CDS2026085 783 + 0.65645
NA RPC_1151 histone deacetylase superfamilychromosome CDS1252542 930 - 0.651613
NA RPC_0020 short-chain dehydrogenase/reductase SDRchromosome CDS23282 897 - 0.639911
NA RPC_1317 magnesium protoporphyrin O-methyltransferasechromosome CDS1434612 702 + 0.665242
NA RPC_3043 ABC transporter relatedchromosome CDS3368916 1797 + 0.641625
NA RPC_0644 short-chain dehydrogenase/reductase SDRchromosome CDS698504 759 + 0.620553
NA RPC_1870 secretion protein HlyDchromosome CDS2035492 1287 + 0.671329
NA RPC_2967 AMP-dependent synthetase and ligasechromosome CDS3247019 1509 - 0.646123
NA RPC_2940 Methyltransferase type 11chromosome CDS3215888 675 + 0.653333
NA RPC_4293 AMP-dependent synthetase and ligasechromosome CDS4791671 1629 + 0.642726
NA RPC_1426 ABC transporter relatedchromosome CDS1548753 1803 - 0.656129
NA RPC_4512 ABC transporter relatedchromosome CDS5029505 2238 - 0.633155
NA RPC_2558 secretion protein HlyDchromosome CDS2774825 1356 + 0.684366
NA RPC_3363 AMP-dependent synthetase and ligasechromosome CDS3726072 2106 - 0.689934
NA RPC_0051 cytochrome P450chromosome CDS59017 1389 + 0.686825
NA RPC_2054 Amino acid adenylationchromosome CDS2239451 9309 + 0.670534
NA RPC_2182 ABC transporter relatedchromosome CDS2376565 1803 + 0.677759
NA RPC_1425 fumarylacetoacetate (FAA) hydrolasechromosome CDS1547985 702 - 0.680912
NA RPC_0145 thiopurine S-methyltransferasechromosome CDS160619 633 - 0.526066
NA RPC_1849 fumarylacetoacetate (FAA) hydrolasechromosome CDS2012075 774 - 0.625323
NA RPC_0522 methyltransferasechromosome CDS562601 840 + 0.695238
NA RPC_1032 short-chain dehydrogenase/reductase SDRchromosome CDS1132207 768 + 0.653646
NA RPC_1995 hypothetical proteinchromosome CDS2171310 822 + 0.625304
NA RPC_1590 thioesterase superfamilychromosome CDS1724422 489 - 0.666667
NA RPC_2973 Phenylacetic acid degradation-related proteinchromosome CDS3254044 429 - 0.657343
NA RPC_4695 short-chain dehydrogenase/reductase SDRchromosome CDS5258238 843 - 0.682088
NA RPC_3184 short-chain dehydrogenase/reductase SDRchromosome CDS3526499 750 + 0.665333
NA RPC_4635 Hydrophobe/amphiphile efflux-1 HAE1chromosome CDS5179409 3144 - 0.645674
NA RPC_4264 cytochrome P450chromosome CDS4748046 1266 + 0.636651
NA RPC_4268 short-chain dehydrogenase/reductase SDRchromosome CDS4752962 810 - 0.665432
NA RPC_0956 Methyltransferase type 12chromosome CDS1051166 696 - 0.66954
NA RPC_2109 beta-ketoacyl synthasechromosome CDS2311074 1212 - 0.679043
NA RPC_1903 Hydrophobe/amphiphile efflux-1 HAE1chromosome CDS2074007 3201 + 0.653858
NA RPC_1016 Benzoate-CoA ligase familychromosome CDS1115760 1566 + 0.596424
NA RPC_2797 secretion protein HlyDchromosome CDS3039080 1104 - 0.700181
NA RPC_1918 Methyltransferase type 11chromosome CDS2090594 690 + 0.621739
NA RPC_3035 beta-ketoacyl synthasechromosome CDS3340748 6774 - 0.631089
NA RPC_3202 AMP-dependent synthetase and ligasechromosome CDS3545333 1602 - 0.646067
NA RPC_1616 peptidase S58, DmpAchromosome CDS1750691 999 - 0.724725
NA RPC_1827 hypothetical proteinchromosome CDS1981356 888 - 0.564189
NA RPC_0505 Acetoacetyl-CoA reductasechromosome CDS545293 726 + 0.625344
NA RPC_3362 Amino acid adenylationchromosome CDS3717254 8832 - 0.699615
NA RPC_3031 4'-phosphopantetheinyl transferasechromosome CDS3330650 693 - 0.619048
NA RPC_1035 AMP-dependent synthetase and ligasechromosome CDS1135055 1644 + 0.636253
NA RPC_0108 short-chain dehydrogenase/reductase SDRchromosome CDS124109 765 - 0.703268
NA RPC_4193 short-chain dehydrogenase/reductase SDRchromosome CDS4658260 753 - 0.614874
NA RPC_0371 Esterase, PHB depolymerasechromosome CDS397551 1185 + 0.678481
NA RPC_0553 short-chain dehydrogenase/reductase SDRchromosome CDS600735 786 + 0.69084
NA RPC_1997 3-hydroxybutyrate dehydrogenasechromosome CDS2172794 780 + 0.651282
NA RPC_3577 ABC transporter relatedchromosome CDS3977503 2793 - 0.616899
NA RPC_4072 ABC transporter relatedchromosome CDS4523426 1815 + 0.653995
NA RPC_0137 Methyltransferase type 11chromosome CDS150504 747 + 0.562249
NA RPC_0926 Carboxymethylenebutenolidasechromosome CDS1024130 741 + 0.668016
NA RPC_3585 Hydrophobe/amphiphile efflux-1 HAE1chromosome CDS3986336 3153 - 0.635585
NA RPC_2227 AMP-dependent synthetase and ligasechromosome CDS2427731 1695 + 0.651917
NA RPC_4658 Secretion protein HlyDchromosome CDS5211182 1437 - 0.681976
NA RPC_2983 short-chain dehydrogenase/reductase SDRchromosome CDS3264025 876 + 0.6621
NA RPC_3371 secretion protein HlyDchromosome CDS3745634 1113 + 0.65319
NA RPC_1189 secretion protein HlyDchromosome CDS1298912 1146 + 0.683246
NA RPC_3372 acriflavin resistance proteinchromosome CDS3746759 3066 + 0.650359
NA RPC_3526 hypothetical proteinchromosome CDS3920532 270 - 0.596296
NA RPC_2560 acriflavin resistance proteinchromosome CDS2779505 3105 + 0.657649
NA RPC_0886 Secretion protein HlyDchromosome CDS979513 921 - 0.724213
NA RPC_2000 3-hydroxybutyrate dehydrogenasechromosome CDS2175929 780 + 0.65
NA RPC_0017 short-chain dehydrogenase/reductase SDRchromosome CDS20585 738 - 0.653117
NA RPC_4002 3-hydroxybutyrate dehydrogenasechromosome CDS4450931 789 - 0.643853
NA RPC_2709 AMP-dependent synthetase and ligasechromosome CDS2937857 1650 - 0.647879
NA RPC_1049 AMP-dependent synthetase and ligasechromosome CDS1151770 1488 + 0.641801
NA RPC_1190 Hydrophobe/amphiphile efflux-1 HAE1chromosome CDS1300062 3174 + 0.663831
NA RPC_3033 Thioesterasechromosome CDS3337145 2490 - 0.646185
NA RPC_0753 MATE efflux family proteinchromosome CDS830214 1326 + 0.683258
NA RPC_3578 secretion protein HlyDchromosome CDS3980292 1077 - 0.630455
NA RPC_4511 secretion protein HlyDchromosome CDS5028159 1350 - 0.622222
NA RPC_4665 secretion protein HlyDchromosome CDS5219604 1071 - 0.680672
NA RPC_2193 AMP-dependent synthetase and ligasechromosome CDS2391504 1542 - 0.650454
NA RPC_2369 ABC transporter relatedchromosome CDS2568911 1728 - 0.67419
NA RPC_4483 Methyltransferase type 12chromosome CDS4991257 873 + 0.655212
NA RPC_0358 ABC transporter relatedchromosome CDS378575 813 - 0.661747
NA RPC_1926 short-chain dehydrogenase/reductase SDRchromosome CDS2097395 738 + 0.678862
NA RPC_1871 Hydrophobe/amphiphile efflux-1 HAE1chromosome CDS2036778 3141 + 0.656479
NA RPC_0004 hypothetical proteinchromosome CDS5106 1245 + 0.657028
NA RPC_3793 short-chain dehydrogenase/reductase SDRchromosome CDS4218369 762 - 0.683727
NA RPC_2627 UbiE/COQ5 methyltransferasechromosome CDS2860066 816 - 0.661765
NA RPC_3364 cyclic nucleotide-binding domain (cNMP-BD) proteinchromosome CDS3728174 2319 - 0.663217
NA RPC_3407 conserved hypothetical proteinchromosome CDS3792840 657 - 0.659056
NA RPC_2136 Trans-aconitate 2-methyltransferasechromosome CDS2333350 771 + 0.679637
NA RPC_3455 ABC transporter relatedchromosome CDS3831377 2118 - 0.65203
NA RPC_4352 methyltransferase smallchromosome CDS4853177 762 - 0.717848
NA RPC_0773 Methyltransferase type 12chromosome CDS858238 846 + 0.470449