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2024-05-03 02:35:10

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Rhodoferax ferrireducens DSM 15236, DSM 15236

Number of genes found: 148

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Rhodoferax ferrireducens DSM 15236, DSM 15236
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Rfer_1463 conserved hypothetical proteinchromosome CDS1573453 702 + 0.615385
NA Rfer_0273 AMP-dependent synthetase and ligasechromosome CDS277417 1860 - 0.608065
NA Rfer_3382 hypothetical proteinchromosome CDS3758917 1263 + 0.467934
NA Rfer_3383 ABC transporter relatedchromosome CDS3760487 522 - 0.6341
NA Rfer_0646 short-chain dehydrogenase/reductase SDRchromosome CDS669543 771 - 0.658885
NA Rfer_3980 hypothetical proteinchromosome CDS4445194 288 + 0.541667
NA Rfer_3653 protein of unknown function DUF752chromosome CDS4071015 750 + 0.634667
NA Rfer_0320 short-chain dehydrogenase/reductase SDRchromosome CDS318867 804 - 0.628109
NA Rfer_0859 ABC transporter relatedchromosome CDS896701 960 - 0.647917
NA Rfer_3769 Type I secretion membrane fusion protein, HlyDchromosome CDS4207257 1416 - 0.612994
NA Rfer_3775 AMP-dependent synthetase and ligasechromosome CDS4217231 1695 - 0.621239
NA Rfer_0315 Phenylacetic acid degradation-related proteinchromosome CDS315154 564 + 0.544326
NA Rfer_2088 hypothetical proteinchromosome CDS2263003 597 - 0.564489
NA Rfer_1977 short-chain dehydrogenase/reductase SDRchromosome CDS2123776 756 + 0.613757
NA Rfer_4000 hypothetical proteinchromosome CDS4462776 438 + 0.472603
NA Rfer_2715 VCBSchromosome CDS2987111 9081 - 0.593987
NA Rfer_0442 short-chain dehydrogenase/reductase SDRchromosome CDS448413 855 + 0.631579
NA Rfer_3810 Carboxymethylenebutenolidasechromosome CDS4249926 693 - 0.666667
NA Rfer_3313 Twin-arginine translocation pathway signalchromosome CDS3677356 891 + 0.62514
NA Rfer_3416 conserved hypothetical protein, potential methyltransferasechromosome CDS3799808 750 - 0.586667
NA Rfer_3285 short-chain dehydrogenase/reductase SDRchromosome CDS3647360 783 + 0.676884
NA Rfer_2856 putative GAF sensor proteinchromosome CDS3155249 1143 + 0.645669
NA Rfer_1812 protein of unknown function DUF938chromosome CDS1948432 687 - 0.643377
NA Rfer_3623 secretion protein HlyDchromosome CDS4039538 1197 + 0.664996
NA Rfer_3201 ABC transporter relatedchromosome CDS3544221 912 + 0.631579
NA Rfer_3185 secretion protein HlyDchromosome CDS3523348 1341 + 0.663684
NA Rfer_2066 secretion protein HlyDchromosome CDS2239495 1287 - 0.64258
NA Rfer_3507 short-chain dehydrogenase/reductase SDRchromosome CDS3898836 885 - 0.628249
NA Rfer_2065 Hydrophobe/amphiphile efflux-1 HAE1chromosome CDS2236324 3159 - 0.594175
NA Rfer_0860 ABC transporter relatedchromosome CDS897660 948 - 0.652954
NA Rfer_0545 AMP-dependent synthetase and ligasechromosome CDS569083 1686 - 0.620996
NA Rfer_2323 isochorismatase hydrolasechromosome CDS2551396 603 - 0.616915
NA Rfer_2528 histone deacetylase superfamilychromosome CDS2787232 948 - 0.630802
NA Rfer_0115 DSBA oxidoreductasechromosome CDS116778 699 - 0.640916
NA Rfer_0169 secretion protein HlyDchromosome CDS169851 1071 + 0.621849
NA Rfer_2069 3-hydroxybutyrate dehydrogenasechromosome CDS2242843 771 - 0.61738
NA Rfer_2560 Acetoacetyl-CoA reductasechromosome CDS2821467 738 - 0.588076
NA Rfer_3309 MATE efflux family proteinchromosome CDS3673002 1440 + 0.6625
NA Rfer_4001 beta-ketoacyl synthasechromosome CDS4463224 1263 + 0.634204
NA Rfer_3141 short-chain dehydrogenase/reductase SDRchromosome CDS3480635 747 + 0.630522
NA Rfer_2518 conserved hypothetical proteinchromosome CDS2779637 747 - 0.607764
NA Rfer_2719 Hemolysin-type calcium-binding proteinchromosome CDS2999086 2391 - 0.599749
NA Rfer_0699 AMP-dependent synthetase and ligasechromosome CDS735024 1638 + 0.603175
NA Rfer_3977 beta-ketoacyl synthasechromosome CDS4442889 1062 - 0.605461
NA Rfer_3136 short-chain dehydrogenase/reductase SDRchromosome CDS3475546 777 + 0.620335
NA Rfer_2567 fumarylacetoacetate (FAA) hydrolasechromosome CDS2828617 696 + 0.636494
NA Rfer_0379 acriflavin resistance proteinchromosome CDS386337 3075 - 0.608781
NA Rfer_0475 putative oxidoreductase proteinchromosome CDS490720 894 + 0.555928
NA Rfer_2492 Phenylacetic acid degradation-related proteinchromosome CDS2753333 441 - 0.634921
NA Rfer_0613 fumarylacetoacetate (FAA) hydrolasechromosome CDS637332 1005 + 0.646766
NA Rfer_3505 Phenylacetic acid degradation-related proteinchromosome CDS3897121 489 - 0.568507
NA Rfer_2600 secretion protein HlyDchromosome CDS2862942 1131 + 0.625995
NA Rfer_0911 short-chain dehydrogenase/reductase SDRchromosome CDS955014 765 + 0.597386
NA Rfer_0045 heme exporter protein CcmAchromosome CDS47742 633 - 0.622433
NA Rfer_0974 Phenylacetic acid degradation-related proteinchromosome CDS1023985 423 + 0.55792
NA Rfer_3984 beta-ketoacyl synthasechromosome CDS4447723 1194 + 0.606365
NA Rfer_2204 short-chain dehydrogenase/reductase SDRchromosome CDS2410028 759 - 0.615283
NA Rfer_0412 Secretion protein HlyDchromosome CDS421066 1614 - 0.634449
NA Rfer_2632 DSBA oxidoreductasechromosome CDS2896583 612 + 0.588235
NA Rfer_4185 Methyltransferase type 11chromosome CDS4654650 798 + 0.600251
NA Rfer_3766 Hemolysin-type calcium-binding proteinchromosome CDS4202622 3501 - 0.613539
NA Rfer_2714 Type I secretion membrane fusion protein, HlyDchromosome CDS2985756 1356 - 0.616519
NA Rfer_0061 Phenylacetic acid degradation-related proteinchromosome CDS63721 423 - 0.664303
NA Rfer_3568 Methyltransferase type 12chromosome CDS3967524 609 - 0.658457
NA Rfer_3627 thioesterase superfamilychromosome CDS4045275 471 - 0.598726
NA Rfer_2845 AMP-dependent synthetase and ligasechromosome CDS3142616 1623 - 0.640789
NA Rfer_2520 isochorismatase hydrolasechromosome CDS2781191 567 + 0.619048
NA Rfer_2722 ABC transporter relatedchromosome CDS3003645 2193 - 0.590515
NA Rfer_0271 short-chain dehydrogenase/reductase SDRchromosome CDS275287 765 - 0.666667
NA Rfer_3284 AMP-dependent synthetase and ligasechromosome CDS3645834 1533 + 0.643836
NA Rfer_1006 AMP-dependent synthetase and ligasechromosome CDS1059922 1641 + 0.600244
NA Rfer_3586 short-chain dehydrogenase/reductase SDRchromosome CDS3991127 762 + 0.624672
NA Rfer_2437 short-chain dehydrogenase/reductase SDRchromosome CDS2683562 696 - 0.563218
NA Rfer_0433 short-chain dehydrogenase/reductase SDRchromosome CDS438300 765 + 0.594771
NA Rfer_0998 short-chain dehydrogenase/reductase SDRchromosome CDS1052197 783 + 0.641124
NA Rfer_0321 AMP-dependent synthetase and ligasechromosome CDS319673 1512 - 0.627645
NA Rfer_4193 isochorismatase hydrolasechromosome CDS4662716 681 - 0.587372
NA Rfer_1732 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS1868912 747 + 0.601071
NA Rfer_1552 acriflavin resistance proteinchromosome CDS1672046 3183 + 0.628966
NA Rfer_2098 conserved hypothetical proteinchromosome CDS2271941 585 - 0.579487
NA Rfer_4141 cytochrome P450chromosome CDS4613998 1185 - 0.620253
NA Rfer_2393 AMP-dependent synthetase and ligasechromosome CDS2636240 1629 - 0.58011
NA Rfer_3994 short-chain dehydrogenase/reductase SDRchromosome CDS4457103 741 + 0.616734
NA Rfer_1316 ABC transporter relatedchromosome CDS1410487 2355 + 0.620382
NA Rfer_0384 phosphopantetheine-bindingchromosome CDS392468 252 - 0.611111
NA Rfer_1551 secretion protein HlyDchromosome CDS1670842 1197 + 0.680033
NA Rfer_3996 putative methyltransferasechromosome CDS4458990 870 - 0.603448
NA Rfer_1734 beta-ketoacyl synthasechromosome CDS1870133 1248 + 0.588942
NA Rfer_3978 acyl carrier proteinchromosome CDS4443947 273 - 0.553114
NA Rfer_0978 N-acyl-D-amino-acid deacylasechromosome CDS1027160 1467 - 0.652352
NA Rfer_1515 secretion protein HlyDchromosome CDS1631762 1218 + 0.631363
NA Rfer_3526 Male sterility-likechromosome CDS3921900 1998 - 0.590591
NA Rfer_3760 acriflavin resistance proteinchromosome CDS4192474 3330 - 0.618919
NA Rfer_0927 N-acyl-D-amino-acid deacylasechromosome CDS975621 1500 - 0.619333
NA Rfer_1421 thiopurine S-methyltransferasechromosome CDS1528654 612 - 0.602941
NA Rfer_1702 Secretion protein HlyDchromosome CDS1833111 1197 + 0.690894
NA Rfer_0380 secretion protein HlyDchromosome CDS389408 1203 - 0.634248
NA Rfer_1940 Secretion protein HlyDchromosome CDS2082188 1188 - 0.622896
NA Rfer_0298 cytochrome P450chromosome CDS299379 1179 + 0.635284
NA Rfer_3139 beta-ketoacyl synthasechromosome CDS3478426 1299 - 0.633564
NA Rfer_0861 secretion protein HlyDchromosome CDS898607 993 - 0.590131
NA Rfer_3106 peptidase S58, DmpAchromosome CDS3445802 1095 + 0.626484
NA Rfer_3133 5-oxopent-3-ene-1,2,5-tricarboxylatedecarboxylas echromosome CDS3472500 855 + 0.616374
NA Rfer_2941 ABC transporter relatedchromosome CDS3253847 978 + 0.623722
NA Rfer_0405 Methionine biosynthesis MetWchromosome CDS411439 582 - 0.621993
NA Rfer_3761 secretion protein HlyDchromosome CDS4195805 1095 - 0.655708
NA Rfer_2576 Esterase, PHB depolymerasechromosome CDS2836508 1191 - 0.664148
NA Rfer_1925 AMP-dependent synthetase and ligasechromosome CDS2067139 1503 + 0.605456
NA Rfer_2601 acriflavin resistance proteinchromosome CDS2864076 3201 + 0.595439
NA Rfer_1246 short-chain dehydrogenase/reductase SDRchromosome CDS1340840 747 + 0.507363
NA Rfer_1696 Phenylacetic acid degradation-related proteinchromosome CDS1825902 582 - 0.594502
NA Rfer_3017 short-chain dehydrogenase/reductase SDRchromosome CDS3327007 783 - 0.600255
NA Rfer_4104 acriflavin resistance proteinchromosome CDS4578848 3096 - 0.656331
NA Rfer_1011 putative transcriptional regulator, TetR familychromosome CDS1065637 2313 + 0.590575
NA Rfer_2493 short-chain dehydrogenase/reductase SDRchromosome CDS2753776 825 - 0.62303
NA Rfer_2488 short-chain dehydrogenase/reductase SDRchromosome CDS2749759 915 - 0.637158
NA Rfer_3752 AMP-dependent synthetase and ligasechromosome CDS4183652 1674 - 0.576464
NA Rfer_2090 Lipid A export ATP-binding/permease protein MsbAchromosome CDS2263771 1746 - 0.556128
NA Rfer_0698 conserved hypothetical proteinchromosome CDS734666 252 - 0.547619
NA Rfer_1512 ABC transporter relatedchromosome CDS1627836 1836 - 0.62963
NA Rfer_4114 Phenylacetic acid degradation-related proteinchromosome CDS4592058 486 - 0.641975
NA Rfer_4105 secretion protein HlyDchromosome CDS4581957 1152 - 0.699653
NA Rfer_1679 hypothetical proteinchromosome CDS1809209 888 + 0.615991
NA Rfer_3971 ABC transporter relatedchromosome CDS4437838 921 - 0.596091
NA Rfer_1733 acyl carrier proteinchromosome CDS1869756 240 + 0.466667
NA Rfer_3493 ABC transporter relatedchromosome CDS3885018 1827 - 0.628352
NA Rfer_3195 short-chain dehydrogenase/reductase SDRchromosome CDS3535439 795 - 0.615094
NA Rfer_0305 short-chain dehydrogenase/reductase SDRchromosome CDS305681 705 + 0.625532
NA Rfer_4047 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS4511758 750 - 0.626667
NA Rfer_2229 Methyltransferase type 11chromosome CDS2445751 831 + 0.625752
NA Rfer_4204 AMP-dependent synthetase and ligasechromosome CDS4674891 1602 - 0.56367
NA Rfer_0216 Benzoate-CoA ligase familychromosome CDS213331 1599 - 0.631019
NA Rfer_3833 AMP-dependent synthetase and ligasechromosome CDS4278237 1806 - 0.620709
NA Rfer_3999 beta-ketoacyl synthasechromosome CDS4461431 1260 - 0.620635
NA Rfer_0813 short-chain dehydrogenase/reductase SDRchromosome CDS848974 795 + 0.633962
NA Rfer_3128 short-chain dehydrogenase/reductase SDRchromosome CDS3466725 762 + 0.611549
NA Rfer_1638 short-chain dehydrogenase/reductase SDRchromosome CDS1769068 810 - 0.588889
NA Rfer_3898 AMP-dependent synthetase and ligasechromosome CDS4351729 1662 + 0.649218
NA Rfer_2717 hypothetical proteinchromosome CDS2996979 1497 - 0.573146
NA Rfer_0828 isochorismatase hydrolasechromosome CDS864844 609 - 0.612479
NA Rfer_2283 AMP-dependent synthetase and ligasechromosome CDS2505745 1650 - 0.583636
NA Rfer_3770 ABC transporter relatedchromosome CDS4208672 2160 - 0.614352
NA Rfer_3558 ABC transporter relatedchromosome CDS3957870 924 - 0.637446
NA Rfer_1017 O-succinylbenzoate--CoA ligasechromosome CDS1072745 1659 + 0.613623
NA Rfer_2145 AMP-dependent synthetase and ligasechromosome CDS2326892 2877 - 0.704901
NA Rfer_0170 response regulator receiver domain proteinchromosome CDS170918 2793 + 0.632653
NA Rfer_3515 UbiE/COQ5 methyltransferasechromosome CDS3909210 864 + 0.622685
NA Rfer_1612 UbiE/COQ5 methyltransferasechromosome CDS1743166 1071 + 0.635854