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2024-05-07 08:56:27

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Rhodopseudomonas palustris HaA2, HaA2

Number of genes found: 188

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Rhodopseudomonas palustris HaA2, HaA2
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RPB_1133 Amine oxidase (copper-containing)chromosome CDS1302035 1959 - 0.643696
NA RPB_3606 oxoacyl carrier protein reductasechromosome CDS4138137 780 + 0.679487
NA RPB_0995 AMP-dependent synthetase and ligasechromosome CDS1138773 1383 - 0.700651
NA RPB_0907 homogentisate 1,2-dioxygenasechromosome CDS1044169 1347 + 0.643653
NA RPB_0022 Short-chain dehydrogenase/reductase SDRchromosome CDS22420 882 - 0.664399
NA RPB_0711 Esterase, PHB depolymerasechromosome CDS796698 1179 + 0.670908
NA RPB_4458 Histone deacetylase superfamilychromosome CDS5047003 930 + 0.672043
NA RPB_1858 Dienelactone hydrolasechromosome CDS2122943 828 + 0.714976
NA RPB_1374 ABC transporter relatedchromosome CDS1567138 777 + 0.660232
NA RPB_0275 short-chain dehydrogenase/reductasechromosome CDS309947 747 - 0.68407
NA RPB_2262 Short-chain dehydrogenase/reductase SDRchromosome CDS2610656 786 - 0.69084
NA RPB_1165 AMP-dependent synthetase and ligasechromosome CDS1335132 1629 - 0.642112
NA RPB_0560 3-oxoacyl-acyl carrier protein reductasechromosome CDS630846 783 + 0.678161
NA RPB_4075 3-oxoacyl-acyl carrier protein reductasechromosome CDS4647546 828 - 0.661836
NA RPB_1344 AMP-dependent synthetase and ligasechromosome CDS1530047 1719 - 0.638743
NA RPB_4394 AMP-dependent synthetase and ligasechromosome CDS4978618 1272 + 0.676887
NA RPB_1375 Mammalian cell entry relatedchromosome CDS1567922 1173 + 0.647059
NA RPB_3214 Phenylacetic acid degradation-related proteinchromosome CDS3676577 459 - 0.668845
NA RPB_2321 Short-chain dehydrogenase/reductase SDRchromosome CDS2669174 795 + 0.674214
NA RPB_3934 Cytochrome P450chromosome CDS4488655 1266 + 0.64376
NA RPB_1686 AMP-dependent synthetase and ligasechromosome CDS1919334 1875 + 0.666133
NA RPB_4429 5-oxoprolinase (ATP-hydrolyzing)chromosome CDS5018602 1746 + 0.675258
NA RPB_3577 AMP-dependent synthetase and ligasechromosome CDS4100846 1893 - 0.673534
NA RPB_1708 2-oxo-hepta-3-ene-1,7-dioic acid hydratasechromosome CDS1943317 807 - 0.643123
NA RPB_0188 Isochorismatase hydrolasechromosome CDS207040 651 - 0.620584
NA RPB_2246 VCBSchromosome CDS2576041 17310 + 0.652513
NA RPB_3597 AMP-dependent synthetase and ligasechromosome CDS4126614 1632 - 0.657475
NA RPB_1000 AMP-dependent synthetase and ligasechromosome CDS1144232 1869 - 0.699839
NA RPB_1654 Histone deacetylase superfamilychromosome CDS1883709 1026 + 0.667641
NA RPB_1153 AMP-dependent synthetase and ligasechromosome CDS1324796 1608 + 0.687189
NA RPB_4569 DSBA oxidoreductasechromosome CDS5168161 624 - 0.669872
NA RPB_4080 AMP-dependent synthetase and ligasechromosome CDS4651251 1557 + 0.675658
NA RPB_4636 Cytochrome P450chromosome CDS5240150 1380 + 0.675362
NA RPB_2264 Short-chain dehydrogenase/reductase SDRchromosome CDS2612501 768 + 0.648438
NA RPB_3896 Aromatic-ring-hydroxylating dioxygenase, beta subunitchromosome CDS4452184 510 + 0.652941
NA RPB_0991 conserved hypothetical proteinchromosome CDS1135055 270 - 0.622222
NA RPB_4321 UbiE/COQ5 methyltransferasechromosome CDS4904361 627 - 0.688995
NA RPB_4328 Short-chain dehydrogenase/reductase SDRchromosome CDS4911504 873 - 0.664376
NA RPB_4705 AMP-dependent synthetase and ligasechromosome CDS5324776 1587 + 0.695652
NA RPB_3640 Phenylacetic acid degradation Bchromosome CDS4177339 288 - 0.673611
NA RPB_2359 conserved hypothetical proteinchromosome CDS2713504 873 + 0.67354
NA RPB_4393 IucA/IucCchromosome CDS4976888 1734 + 0.670127
NA RPB_3803 Short-chain dehydrogenase/reductase SDRchromosome CDS4340759 807 - 0.653036
NA RPB_3939 Short-chain dehydrogenase/reductase SDRchromosome CDS4495440 801 - 0.659176
NA RPB_3715 Thioesterase superfamilychromosome CDS4254201 522 + 0.649425
NA RPB_0285 ABC transporter relatedchromosome CDS321674 741 + 0.692308
NA RPB_2073 hypothetical proteinchromosome CDS2355558 336 + 0.669643
NA RPB_4115 Phosphatidylethanolamine N-methyltransferasechromosome CDS4686412 639 - 0.665102
NA RPB_2467 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS2823414 738 + 0.663957
NA RPB_3848 Short-chain dehydrogenase/reductase SDRchromosome CDS4401078 762 - 0.664042
NA RPB_0096 FAD dependent oxidoreductasechromosome CDS103097 2169 - 0.684186
NA RPB_1149 Phenylacetic acid degradation-related proteinchromosome CDS1321476 411 + 0.671533
NA RPB_3222 Short-chain dehydrogenase/reductase SDRchromosome CDS3684446 762 + 0.690289
NA RPB_4700 AMP-dependent synthetase and ligasechromosome CDS5319225 1551 + 0.647324
NA RPB_4145 Beta-lactamase-likechromosome CDS4719462 1992 - 0.645582
NA RPB_4229 AMP-dependent synthetase and ligasechromosome CDS4805360 1539 - 0.666017
NA RPB_1834 FAD dependent oxidoreductasechromosome CDS2099051 1515 - 0.716172
NA RPB_4637 Short-chain dehydrogenase/reductasechromosome CDS5241547 843 - 0.671412
NA RPB_3076 Short-chain dehydrogenase/reductase SDRchromosome CDS3507064 765 - 0.648366
NA RPB_4251 Methionine biosynthesis MetWchromosome CDS4837102 696 - 0.66523
NA RPB_1204 Short-chain dehydrogenase/reductasechromosome CDS1378147 777 - 0.669241
NA RPB_1549 conserved hypothetical proteinchromosome CDS1746407 849 + 0.645465
NA RPB_3121 Short-chain dehydrogenase/reductase SDRchromosome CDS3555430 804 + 0.643035
NA RPB_2094 Short-chain dehydrogenase/reductasechromosome CDS2379551 735 - 0.687075
NA RPB_2069 AMP-dependent synthetase and ligasechromosome CDS2351180 1371 + 0.728665
NA RPB_1408 3-hydroxybutyrate dehydrogenasechromosome CDS1599501 846 + 0.646572
NA RPB_2451 Short-chain dehydrogenase/reductase SDRchromosome CDS2807391 744 - 0.680108
NA RPB_4387 Short-chain dehydrogenase/reductasechromosome CDS4970948 783 - 0.696041
NA RPB_4527 3-oxoacyl-acyl carrier protein reductasechromosome CDS5116506 735 - 0.668027
NA RPB_3353 Phosphopantetheine-bindingchromosome CDS3835464 282 + 0.606383
NA RPB_0580 AMP-dependent synthetase and ligasechromosome CDS652169 1731 + 0.658001
NA RPB_3027 Short-chain dehydrogenase/reductasechromosome CDS3450231 780 + 0.68718
NA RPB_0229 AMP-dependent synthetase and ligasechromosome CDS261224 1716 - 0.657925
NA RPB_0020 DSBA oxidoreductasechromosome CDS20675 603 - 0.648425
NA RPB_3356 Beta-ketoacyl synthasechromosome CDS3837465 1281 + 0.679157
NA RPB_1869 AMP-dependent synthetase and ligasechromosome CDS2132169 1563 - 0.667946
NA RPB_3338 Short-chain dehydrogenase/reductase SDRchromosome CDS3818845 852 - 0.672535
NA RPB_1029 Phenylacetic acid degradation-related proteinchromosome CDS1181161 888 - 0.692568
NA RPB_3600 AMP-dependent synthetase and ligasechromosome CDS4130524 1578 + 0.652725
NA RPB_3655 SAM binding proteinchromosome CDS4195855 666 + 0.599099
NA RPB_1684 Short-chain dehydrogenase/reductase SDRchromosome CDS1917524 759 + 0.673254
NA RPB_4163 Dienelactone hydrolasechromosome CDS4734851 741 + 0.669366
NA RPB_4257 Short-chain dehydrogenase/reductase SDRchromosome CDS4842961 789 + 0.717364
NA RPB_0019 Short-chain dehydrogenase/reductase SDRchromosome CDS19785 738 - 0.682927
NA RPB_0070 conserved hypothetical proteinchromosome CDS71962 765 + 0.700654
NA RPB_3390 Tripartite ATP-independent periplasmic transporter, DctQ componentchromosome CDS3874401 606 + 0.60396
NA RPB_2507 Phenylacetic acid degradation-related proteinchromosome CDS2868752 483 + 0.666667
NA RPB_1293 TRAP dicarboxylate transporter DctM subunitchromosome CDS1475132 1323 + 0.653061
NA RPB_0770 Short-chain dehydrogenase/reductase SDRchromosome CDS863164 807 - 0.682776
NA RPB_3613 Cytochrome P450chromosome CDS4148782 1233 + 0.660989
NA RPB_3589 Short-chain dehydrogenase/reductase SDRchromosome CDS4113768 915 + 0.665574
NA RPB_0286 Protein of unknown function DUF214chromosome CDS322418 2583 + 0.698026
NA RPB_0028 conserved hypothetical proteinchromosome CDS26356 834 + 0.711031
NA RPB_4005 FAD dependent oxidoreductasechromosome CDS4571884 1551 + 0.69568
NA RPB_3208 DSBA oxidoreductasechromosome CDS3669572 621 - 0.634461
NA RPB_1620 Phosphatidylethanolamine N-methyltransferasechromosome CDS1825900 657 + 0.669711
NA RPB_4003 Hydroxyneurosporene methyltransferase CrtFchromosome CDS4569695 1143 - 0.668416
NA RPB_1057 AMP-dependent synthetase and ligasechromosome CDS1212175 1638 - 0.678877
NA RPB_1285 Phenylacetic acid degradation-related proteinchromosome CDS1469057 510 - 0.670588
NA RPB_4011 Amine oxidasechromosome CDS4577188 1536 - 0.64388
NA RPB_0116 Cytochrome P450chromosome CDS126415 1389 - 0.695464
NA RPB_1751 Short-chain dehydrogenase/reductase SDRchromosome CDS2001762 774 + 0.679587
NA RPB_3188 Short-chain dehydrogenase/reductasechromosome CDS3645198 930 + 0.686022
NA RPB_3261 AMP-dependent synthetase and ligasechromosome CDS3730443 1605 - 0.653583
NA RPB_1704 5-carboxymethyl-2-hydroxymuconatedelta-isomerasechromosome CDS1939198 873 - 0.65063
NA RPB_3631 Cytochrome P450chromosome CDS4167329 1200 + 0.634167
NA RPB_3355 Beta-ketoacyl synthasechromosome CDS3836234 1203 + 0.676642
NA RPB_2014 FAD dependent oxidoreductasechromosome CDS2291381 1659 - 0.699216
NA RPB_3849 Short-chain dehydrogenase/reductase SDRchromosome CDS4401947 783 + 0.684547
NA RPB_3432 Fumarylacetoacetate (FAA) hydrolasechromosome CDS3930758 786 + 0.660305
NA RPB_3751 Thioesterase superfamilychromosome CDS4287937 465 + 0.698925
NA RPB_0729 Putative methyltransferasechromosome CDS819584 741 + 0.672065
NA RPB_4234 5-oxopent-3-ene-1,2,5-tricarboxylatedecarboxylas echromosome CDS4810205 843 + 0.659549
NA RPB_0966 NifT/FixUchromosome CDS1113072 207 + 0.589372
NA RPB_2657 Short-chain dehydrogenase/reductase SDRchromosome CDS3038244 969 + 0.676987
NA RPB_1244 AMP-dependent synthetase and ligasechromosome CDS1422634 1509 - 0.678595
NA RPB_4340 Thioesterase superfamilychromosome CDS4925357 420 + 0.67619
NA RPB_3599 Short-chain dehydrogenase/reductase SDRchromosome CDS4129228 873 + 0.657503
NA RPB_3809 SAM binding proteinchromosome CDS4347207 660 - 0.636364
NA RPB_0526 short-chain dehydrogenase/reductasechromosome CDS587348 840 - 0.670238
NA RPB_0485 SAM binding proteinchromosome CDS543341 630 + 0.692064
NA RPB_1681 AMP-dependent synthetase and ligasechromosome CDS1913283 1545 - 0.647896
NA RPB_2468 acyl carrier proteinchromosome CDS2824465 240 + 0.5875
NA RPB_3083 Phenylacetic acid degradation-related proteinchromosome CDS3514902 438 - 0.643836
NA RPB_3635 phenylacetic acid degradation protein PaaDchromosome CDS4171980 474 - 0.668776
NA RPB_1627 Protein of unknown function DUF140chromosome CDS1833628 1152 + 0.672743
NA RPB_4528 Short-chain dehydrogenase/reductase SDRchromosome CDS5117385 777 + 0.70399
NA RPB_3584 Phenylacetic acid degradation-related proteinchromosome CDS4108976 438 + 0.703196
NA RPB_1938 putative Cytochrome P450chromosome CDS2206614 1182 - 0.664975
NA RPB_2684 AMP-dependent synthetase and ligasechromosome CDS3066330 1650 - 0.660606
NA RPB_1968 UbiE/COQ5 methyltransferasechromosome CDS2235797 831 - 0.689531
NA RPB_0956 Short-chain dehydrogenase/reductase SDRchromosome CDS1105469 873 + 0.646048
NA RPB_2625 AMP-dependent synthetase and ligasechromosome CDS3007401 1566 + 0.674968
NA RPB_3294 hypothetical proteinchromosome CDS3764336 1098 - 0.638434
NA RPB_3392 Twin-arginine translocation pathway signalchromosome CDS3877125 1089 - 0.633609
NA RPB_1062 Cytochrome P450chromosome CDS1216446 1236 + 0.674757
NA RPB_3255 Intradiol ring-cleavage dioxygenasechromosome CDS3721785 906 - 0.644592
NA RPB_4395 conserved hypothetical proteinchromosome CDS4979886 1311 + 0.649886
NA RPB_1373 Protein of unknown function DUF140chromosome CDS1565999 1137 + 0.650836
NA RPB_4496 hypothetical proteinchromosome CDS5085273 630 - 0.525397
NA RPB_3813 Methyltransferase FkbMchromosome CDS4350968 933 - 0.685959
NA RPB_0329 AMP-dependent synthetase and ligasechromosome CDS373834 1536 - 0.646484
NA RPB_3205 Short-chain dehydrogenase/reductase SDRchromosome CDS3667108 918 - 0.673203
NA RPB_3116 Isochorismatase hydrolasechromosome CDS3550901 675 - 0.678519
NA RPB_4428 5-oxoprolinase (ATP-hydrolyzing)chromosome CDS5016527 2073 + 0.686445
NA RPB_1629 Mammalian cell entry relatedchromosome CDS1835667 876 + 0.676941
NA RPB_1637 VCBSchromosome CDS1845713 6384 + 0.638001
NA RPB_3242 Short-chain dehydrogenase/reductase SDRchromosome CDS3704867 753 + 0.685259
NA RPB_1063 Beta-lactamase-likechromosome CDS1217803 1947 - 0.67283
NA RPB_3320 Autoinducer synthesis proteinchromosome CDS3798800 633 - 0.590837
NA RPB_0508 Acetoacetyl-CoA reductasechromosome CDS569514 726 - 0.634986
NA RPB_1546 NodSchromosome CDS1742414 852 + 0.59507
NA RPB_4100 NodSchromosome CDS4669249 579 + 0.633851
NA RPB_1292 Tripartite ATP-independent periplasmic transporter, DctQ componentchromosome CDS1474577 543 + 0.627993
NA RPB_3212 conserved hypothetical proteinchromosome CDS3675143 669 - 0.696562
NA RPB_2102 AMP-dependent synthetase and ligasechromosome CDS2390044 1527 + 0.683039
NA RPB_0994 3-oxoacyl-acyl carrier protein reductasechromosome CDS1138049 732 - 0.688525
NA RPB_2561 Multicopper oxidasechromosome CDS2937958 1329 - 0.715576
NA RPB_1202 Carboxymethylenebutenolidasechromosome CDS1377095 675 + 0.634074
NA RPB_2576 Methyltransferase FkbMchromosome CDS2957359 972 + 0.633745
NA RPB_2469 Beta-ketoacyl synthasechromosome CDS2824800 1266 + 0.64376
NA RPB_3756 DSBA oxidoreductasechromosome CDS4292149 666 - 0.662162
NA RPB_1628 ABC transporter relatedchromosome CDS1834782 771 + 0.675746
NA RPB_1505 Short-chain dehydrogenase/reductase SDRchromosome CDS1700257 861 + 0.636469
NA RPB_1150 Short-chain dehydrogenase/reductase SDRchromosome CDS1321914 762 + 0.699475
NA RPB_2042 Protein of unknown function DUF548chromosome CDS2321839 657 + 0.713851
NA RPB_1337 hypothetical proteinchromosome CDS1521822 678 + 0.713864
NA RPB_2093 3-oxoacyl-acyl carrier protein reductasechromosome CDS2378657 750 - 0.636
NA RPB_1291 Twin-arginine translocation pathway signalchromosome CDS1473383 1041 + 0.636888
NA RPB_1216 Carotenoid oxygenasechromosome CDS1390031 1404 - 0.675926
NA RPB_3897 Short-chain dehydrogenase/reductase SDRchromosome CDS4452690 765 + 0.69281
NA RPB_2848 acid-CoA ligasechromosome CDS3242394 1518 + 0.709486
NA RPB_1017 Isochorismatase hydrolasechromosome CDS1165747 702 + 0.682336
NA RPB_0909 fumarylacetoacetasechromosome CDS1046404 1269 + 0.659574
NA RPB_2971 Generic methyltransferasechromosome CDS3383110 603 - 0.678275
NA RPB_1053 Tellurite resistance protein TehBchromosome CDS1209115 654 + 0.646789
NA RPB_4552 Homospermidine synthasechromosome CDS5146119 1434 + 0.649233
NA RPB_4072 AMP-dependent synthetase and ligasechromosome CDS4644034 1527 + 0.667976
NA RPB_1747 AMP-dependent synthetase and ligasechromosome CDS1995904 1686 + 0.662515
NA RPB_1595 Fumarylacetoacetate (FAA) hydrolasechromosome CDS1797960 702 - 0.666667
NA RPB_1282 conserved hypothetical proteinchromosome CDS1466681 696 - 0.66092
NA RPB_3077 AMP-dependent synthetase and ligasechromosome CDS3507825 1539 - 0.647823
NA RPB_2670 Phenylacetic acid degradation-related proteinchromosome CDS3052952 429 + 0.629371
NA RPB_4392 IucA/IucCchromosome CDS4975114 1791 + 0.667783
NA RPB_3687 Peptidase S58, DmpAchromosome CDS4227083 996 + 0.706827
NA RPB_0612 Beta-ketoacyl synthasechromosome CDS690512 1227 - 0.678077
NA RPB_3652 Cytochrome P450chromosome CDS4192015 1221 + 0.659296
NA RPB_0417 Autoinducer synthesis proteinchromosome CDS460756 657 - 0.651446