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2024-05-06 12:32:08

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Frankia sp. CcI3, CcI3

Number of genes found: 176

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Frankia sp. CcI3, CcI3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Francci3_3373 Methyltransferase type 11chromosome CDS4003293 801 - 0.72035
NA Francci3_1929 AMP-dependent synthetase and ligasechromosome CDS2266390 1947 - 0.735491
NA Francci3_2742 hypothetical proteinchromosome CDS3230989 405 - 0.644444
NA Francci3_1761 DNA topoisomerase IIchromosome CDS2092227 1977 - 0.657562
NA Francci3_1994 Phytanoyl-CoA dioxygenasechromosome CDS2343680 780 + 0.653846
NA Francci3_2982 AMP-dependent synthetase and ligasechromosome CDS3531549 1497 + 0.752171
NA Francci3_1507 hypothetical proteinchromosome CDS1799068 609 + 0.678161
NA Francci3_2849 short-chain dehydrogenase/reductase SDRchromosome CDS3359928 738 - 0.699187
NA Francci3_2091 acyl carrier proteinchromosome CDS2459357 240 + 0.666667
NA Francci3_3281 hypothetical proteinchromosome CDS3884923 240 - 0.620833
NA Francci3_1401 Methyltransferase type 11chromosome CDS1686863 813 + 0.751538
NA Francci3_1504 4'-phosphopantetheinyl transferasechromosome CDS1796616 891 - 0.728395
NA Francci3_1897 short-chain dehydrogenase/reductase SDRchromosome CDS2230731 738 + 0.710027
NA Francci3_0252 Taurine dioxygenasechromosome CDS290443 927 - 0.674218
NA Francci3_2163 short-chain dehydrogenase/reductase SDRchromosome CDS2532545 828 + 0.67029
NA Francci3_1930 cytochrome P450chromosome CDS2269043 1290 + 0.681395
NA Francci3_2596 beta-ketoacyl synthasechromosome CDS3063225 1215 + 0.731687
NA Francci3_1285 hypothetical proteinchromosome CDS1536711 750 + 0.697333
NA Francci3_1808 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-likechromosome CDS2143279 1227 - 0.729421
NA Francci3_2992 amidohydrolasechromosome CDS3542899 1470 - 0.743537
NA Francci3_0981 conserved hypothetical proteinchromosome CDS1159347 726 + 0.756198
NA Francci3_3484 beta-ketoacyl synthasechromosome CDS4152534 1227 + 0.740831
NA Francci3_1239 short-chain dehydrogenase/reductase SDRchromosome CDS1483623 780 + 0.719231
NA Francci3_4148 beta-ketoacyl synthasechromosome CDS4948292 915 - 0.725683
NA Francci3_2239 5-oxoprolinase (ATP-hydrolyzing)chromosome CDS2610405 2127 + 0.670428
NA Francci3_2048 hypothetical proteinchromosome CDS2410134 288 - 0.642361
NA Francci3_4103 short-chain dehydrogenase/reductase SDRchromosome CDS4910923 828 - 0.679952
NA Francci3_1392 FAD dependent oxidoreductasechromosome CDS1672787 1488 - 0.742608
NA Francci3_3275 L-lysine 6-monooxygenase (NADPH)chromosome CDS3877486 1293 - 0.663573
NA Francci3_4001 hypothetical proteinchromosome CDS4785901 297 - 0.606061
NA Francci3_1927 phosphopantetheine-bindingchromosome CDS2265383 261 - 0.662835
NA Francci3_4146 short-chain dehydrogenase/reductase SDRchromosome CDS4947321 561 - 0.673797
NA Francci3_2508 putative acetone carboxylase gamma subunitchromosome CDS2962002 417 - 0.659472
NA Francci3_4171 phosphopantetheine-bindingchromosome CDS4974647 258 - 0.635659
NA Francci3_2458 Chalcone and stilbene synthases-likechromosome CDS2865698 1101 - 0.702089
NA Francci3_2511 multicopper oxidase, type 3chromosome CDS2966913 882 + 0.60771
NA Francci3_0502 putative methyltransferasechromosome CDS586114 654 - 0.70948
NA Francci3_2165 AMP-dependent synthetase and ligasechromosome CDS2535260 1536 + 0.684896
NA Francci3_2218 Protein of unknown function Mtu_121chromosome CDS2593154 1056 + 0.722538
NA Francci3_2506 Hydantoinase B/oxoprolinasechromosome CDS2957493 2325 - 0.655484
NA Francci3_4135 Methyltransferase type 11chromosome CDS4937086 732 + 0.674863
NA Francci3_2935 hypothetical proteinchromosome CDS3465222 543 + 0.677716
NA Francci3_1445 thioesterase superfamilychromosome CDS1735887 615 + 0.694309
NA Francci3_3480 Regulator of polyketide synthase expression-likechromosome CDS4148285 1620 + 0.72284
NA Francci3_1387 amine oxidasechromosome CDS1666755 1512 - 0.730159
NA Francci3_0474 UbiE/COQ5 methyltransferasechromosome CDS554907 798 + 0.697995
NA Francci3_4138 short-chain dehydrogenase/reductase SDRchromosome CDS4939458 912 + 0.685307
NA Francci3_2412 Thioesterasechromosome CDS2800012 774 - 0.68863
NA Francci3_2754 Pyoverdine biosynthesischromosome CDS3245047 969 + 0.615067
NA Francci3_3282 AMP-dependent synthetase and ligasechromosome CDS3885159 1605 - 0.714642
NA Francci3_2507 5-oxoprolinase (ATP-hydrolyzing)chromosome CDS2959853 2127 - 0.672779
NA Francci3_2049 AMP-dependent synthetase and ligasechromosome CDS2410435 1644 - 0.677616
NA Francci3_3770 Methyltransferase type 11chromosome CDS4518585 789 + 0.708492
NA Francci3_2509 Hydantoinase/oxoprolinasechromosome CDS2962483 1914 - 0.685475
NA Francci3_1603 Thioesterasechromosome CDS1924445 801 - 0.705368
NA Francci3_4464 cytochrome P450chromosome CDS5335895 1470 + 0.719728
NA Francci3_0348 short-chain dehydrogenase/reductase SDRchromosome CDS403695 843 - 0.688019
NA Francci3_2450 Amino acid adenylationchromosome CDS2846101 12873 - 0.707217
NA Francci3_2614 Carboxymethylenebutenolidasechromosome CDS3085431 789 + 0.756654
NA Francci3_1115 acyl transferase regionchromosome CDS1328754 747 + 0.713521
NA Francci3_1769 cytochrome P450chromosome CDS2104160 1188 + 0.657407
NA Francci3_0011 Methyltransferase type 11chromosome CDS14536 732 + 0.70082
NA Francci3_2763 Methyltransferase type 11chromosome CDS3256472 921 + 0.716612
NA Francci3_1608 cytochrome P450chromosome CDS1928994 1251 - 0.713829
NA Francci3_0926 beta-ketoacyl synthasechromosome CDS1073531 7887 + 0.746545
NA Francci3_1606 phosphopantetheine-bindingchromosome CDS1927457 258 - 0.639535
NA Francci3_1111 cytochrome P450chromosome CDS1325632 1038 + 0.679191
NA Francci3_2931 beta-ketoacyl synthasechromosome CDS3454985 7683 - 0.734609
NA Francci3_3943 putative acyl carrier proteinchromosome CDS4720020 237 - 0.607595
NA Francci3_1602 AMP-dependent synthetase and ligasechromosome CDS1922655 1737 - 0.701785
NA Francci3_0732 Methyltransferase type 11chromosome CDS847461 714 + 0.721289
NA Francci3_2770 4-hydroxyphenylacetate 3-hydroxylasechromosome CDS3266082 1422 - 0.708158
NA Francci3_2460 Amino acid adenylationchromosome CDS2880335 7818 - 0.7099
NA Francci3_2851 beta-ketoacyl synthasechromosome CDS3362174 1299 - 0.705158
NA Francci3_1933 hypothetical proteinchromosome CDS2273686 237 + 0.725738
NA Francci3_1297 Methyltransferase FkbMchromosome CDS1551549 705 + 0.696454
NA Francci3_3503 histone deacetylase superfamilychromosome CDS4181496 1281 - 0.729899
NA Francci3_4007 hypothetical proteinchromosome CDS4790946 348 - 0.706897
NA Francci3_4144 short-chain dehydrogenase-likechromosome CDS4945360 420 - 0.647619
NA Francci3_4101 beta-ketoacyl synthasechromosome CDS4908450 1275 - 0.682353
NA Francci3_3246 FAD dependent oxidoreductasechromosome CDS3843204 1548 + 0.760336
NA Francci3_2755 pyoverdine biosynthesis proteinchromosome CDS3246012 813 + 0.639606
NA Francci3_3233 Methyltransferase type 11chromosome CDS3827470 927 + 0.674218
NA Francci3_1240 Poly(3-hydroxybutyrate) depolymerase-likechromosome CDS1484570 1113 + 0.689128
NA Francci3_2698 hypothetical proteinchromosome CDS3183091 1545 - 0.727508
NA Francci3_1565 Methyltransferase type 12chromosome CDS1877388 1191 + 0.660789
NA Francci3_2042 cytochrome P450chromosome CDS2402679 1263 - 0.683294
NA Francci3_4064 Methyltransferase FkbMchromosome CDS4863718 753 - 0.670651
NA Francci3_4100 beta-ketoacyl synthasechromosome CDS4907251 1203 - 0.733167
NA Francci3_1599 cytochrome P450chromosome CDS1918974 1200 + 0.699167
NA Francci3_4204 AMP-dependent synthetase and ligasechromosome CDS5019607 1626 + 0.667897
NA Francci3_2162 Methylase involved in ubiquinone/menaquinone biosynthesis-likechromosome CDS2530499 978 + 0.641104
NA Francci3_3576 Poly(3-hydroxybutyrate) depolymerase-likechromosome CDS4274771 1356 - 0.723451
NA Francci3_4460 polyhydroxybutyrate depolymerasechromosome CDS5332594 969 - 0.688339
NA Francci3_3355 Benzoate membrane transport proteinchromosome CDS3978391 1551 - 0.761444
NA Francci3_1299 Methyltransferase FkbMchromosome CDS1553238 858 - 0.726107
NA Francci3_4194 Methyltransferase type 12chromosome CDS5004858 636 - 0.694969
NA Francci3_2406 AMP-dependent synthetase and ligasechromosome CDS2787547 2694 + 0.714922
NA Francci3_1593 AMP-dependent synthetase and ligasechromosome CDS1910030 2670 - 0.716479
NA Francci3_3729 conserved hypothetical proteinchromosome CDS4464250 819 - 0.695971
NA Francci3_4057 L-lysine 6-monooxygenase (NADPH)chromosome CDS4851103 1518 + 0.706192
NA Francci3_0367 short-chain dehydrogenase/reductase SDRchromosome CDS427896 762 - 0.703412
NA Francci3_1934 beta-ketoacyl synthasechromosome CDS2273919 1293 + 0.75174
NA Francci3_0710 conserved hypothetical proteinchromosome CDS812707 906 - 0.747241
NA Francci3_2812 hypothetical proteinchromosome CDS3312429 342 + 0.669591
NA Francci3_0536 Carboxymethylenebutenolidasechromosome CDS622279 720 - 0.716667
NA Francci3_2981 beta-ketoacyl synthasechromosome CDS3525223 6246 + 0.740314
NA Francci3_2046 AMP-dependent synthetase and ligasechromosome CDS2407411 1488 - 0.665323
NA Francci3_1566 putative sugar nucleotide processing enzymechromosome CDS1878579 1245 + 0.677912
NA Francci3_1540 Methyltransferase type 12chromosome CDS1850775 690 - 0.726087
NA Francci3_2461 Amino acid adenylationchromosome CDS2888149 13821 - 0.68953
NA Francci3_3801 short-chain dehydrogenase/reductase SDRchromosome CDS4559328 834 + 0.720623
NA Francci3_2459 Amino acid adenylationchromosome CDS2866869 13470 - 0.695174
NA Francci3_4099 phosphopantetheine-bindingchromosome CDS4906912 264 - 0.659091
NA Francci3_4147 phosphopantetheine-bindingchromosome CDS4947971 297 - 0.656566
NA Francci3_1978 beta-ketoacyl synthasechromosome CDS2322036 2781 + 0.691837
NA Francci3_2044 thioesterase superfamilychromosome CDS2405393 414 - 0.664251
NA Francci3_2802 putative transcriptional regulator, Fis familychromosome CDS3300026 1155 + 0.700433
NA Francci3_1773 UbiE/COQ5 methyltransferasechromosome CDS2109523 798 - 0.640351
NA Francci3_3483 acyl carrier proteinchromosome CDS4152289 249 + 0.646586
NA Francci3_4058 IucA/IucCchromosome CDS4852617 2151 + 0.725709
NA Francci3_1585 Methyltransferase type 11chromosome CDS1901269 771 - 0.642023
NA Francci3_2850 beta-ketoacyl synthasechromosome CDS3360876 1302 - 0.731183
NA Francci3_2221 Phenylacetic acid degradation-related proteinchromosome CDS2595698 411 - 0.725061
NA Francci3_3934 short-chain dehydrogenase/reductase SDRchromosome CDS4707998 786 + 0.73028
NA Francci3_1094 hypothetical proteinchromosome CDS1305378 444 + 0.655405
NA Francci3_3944 FkbH domainchromosome CDS4720256 2064 - 0.735465
NA Francci3_3797 hypothetical proteinchromosome CDS4550253 1488 + 0.747984
NA Francci3_2624 short-chain dehydrogenase/reductase SDRchromosome CDS3098334 720 + 0.690278
NA Francci3_1604 cytochrome P450chromosome CDS1925242 1311 - 0.707857
NA Francci3_0358 Methyltransferase type 11chromosome CDS417342 1089 - 0.705234
NA Francci3_2510 putative transcriptional regulator, Fis familychromosome CDS2964579 1848 + 0.6829
NA Francci3_1984 short-chain dehydrogenase/reductase SDRchromosome CDS2331352 1041 + 0.725264
NA Francci3_1557 short-chain dehydrogenase/reductase SDRchromosome CDS1866971 762 - 0.69685
NA Francci3_0818 short-chain dehydrogenase/reductase SDRchromosome CDS953690 837 + 0.710872
NA Francci3_2242 Hydantoinase B/oxoprolinasechromosome CDS2614652 2232 + 0.660842
NA Francci3_4172 hypothetical proteinchromosome CDS4974958 681 - 0.688693
NA Francci3_0509 Methyltransferase type 12chromosome CDS594168 981 + 0.745158
NA Francci3_1113 Methyltransferase type 11chromosome CDS1327136 960 + 0.646875
NA Francci3_1976 Amino acid adenylationchromosome CDS2316691 4122 + 0.662785
NA Francci3_0284 Poly(3-hydroxybutyrate) depolymerase-likechromosome CDS329213 648 + 0.705247
NA Francci3_3229 Male sterility-likechromosome CDS3823239 1056 + 0.633523
NA Francci3_1178 AMP-dependent synthetase and ligasechromosome CDS1406876 2853 - 0.713284
NA Francci3_2238 putative acetone carboxylase gamma subunitchromosome CDS2610041 360 + 0.638889
NA Francci3_1355 isochorismatase hydrolasechromosome CDS1627983 588 - 0.714286
NA Francci3_4106 DSBA oxidoreductasechromosome CDS4913339 690 + 0.705797
NA Francci3_2664 cytochrome P450chromosome CDS3144476 1326 + 0.686275
NA Francci3_1910 Urate oxidasechromosome CDS2242800 894 - 0.653244
NA Francci3_0944 short-chain dehydrogenase/reductase SDRchromosome CDS1111448 807 + 0.74969
NA Francci3_0365 Thioesterasechromosome CDS426526 1086 + 0.730203
NA Francci3_0072 Poly(3-hydroxybutyrate) depolymerase-likechromosome CDS90921 1179 - 0.717557
NA Francci3_0991 acyl transferase regionchromosome CDS1174730 3231 - 0.634169
NA Francci3_4334 putative cytochrome P450chromosome CDS5175226 1455 + 0.708591
NA Francci3_2092 beta-ketoacyl synthasechromosome CDS2459593 1239 + 0.74092
NA Francci3_4111 putative cytochrome P450chromosome CDS4916317 528 + 0.668561
NA Francci3_2854 phosphopantetheine-bindingchromosome CDS3364494 258 - 0.697674
NA Francci3_2113 isochorismatase hydrolasechromosome CDS2479189 543 - 0.734807
NA Francci3_0108 Twin-arginine translocation pathway signalchromosome CDS130057 984 - 0.711382
NA Francci3_2710 hypothetical proteinchromosome CDS3194966 951 - 0.658254
NA Francci3_1806 AMP-dependent synthetase and ligasechromosome CDS2141065 1581 - 0.719165
NA Francci3_3743 Methyltransferase type 11chromosome CDS4480678 996 + 0.708835
NA Francci3_2237 Hydantoinase/oxoprolinasechromosome CDS2608128 1917 + 0.682838
NA Francci3_1114 polyketide synthase-likechromosome CDS1328129 672 + 0.6875
NA Francci3_0928 hypothetical proteinchromosome CDS1086632 381 + 0.682415
NA Francci3_2119 short-chain dehydrogenase/reductase SDRchromosome CDS2486175 705 - 0.707801
NA Francci3_3626 5-carboxymethyl-2-hydroxymuconatedelta-isomerasechromosome CDS4331109 843 - 0.697509
NA Francci3_1965 cytochrome P450chromosome CDS2306248 1203 - 0.684954
NA Francci3_2245 AMP-dependent synthetase and ligasechromosome CDS2618950 1560 + 0.683974
NA Francci3_0927 beta-ketoacyl synthasechromosome CDS1081410 5223 + 0.741145
NA Francci3_0146 short-chain dehydrogenase/reductase SDRchromosome CDS174885 735 - 0.689796
NA Francci3_3938 Methyltransferase type 12chromosome CDS4715392 1335 - 0.704869
NA Francci3_4056 IucA/IucCchromosome CDS4849088 2019 + 0.72313
NA Francci3_0826 Phenylacetic acid degradation-related proteinchromosome CDS964330 576 + 0.703125
NA Francci3_3462 Amidohydrolase 3chromosome CDS4127184 1098 - 0.748634
NA Francci3_0973 Methyltransferase type 11chromosome CDS1150114 801 - 0.692884
NA Francci3_1614 protein of unknown function DUF574chromosome CDS1936953 843 + 0.68446