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2024-05-04 08:15:26

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Pseudomonas putida KT2440, KT2440

Number of genes found: 156

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Pseudomonas putida KT2440, KT2440
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PP1183 siderophore biosynthesis protein, putativechromosome CDS1358429 702 - 0.669516
NA PP2563 antibiotic biosynthesis protein, putativechromosome CDS2922478 2772 - 0.630952
NA PP2058 porin, putativechromosome CDS2342146 1254 + 0.619617
NA PP3467 sigma-54 dependent transcriptional regulatorchromosome CDS3933499 1911 - 0.672423
NA PP1708 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1907760 759 - 0.657444
NA PP0738 conserved domain proteinchromosome CDS856684 699 - 0.589413
NA PP2503 3-oxoacyl-(acyl-carrier-protein) reductase, putativechromosome CDS2850206 732 + 0.648907
NA PP1946 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2201352 789 + 0.569075
NA PP3257 methyltransferase, putativechromosome CDS3691216 600 - 0.63
NA PP3782 hypothetical proteinchromosome CDS4310035 240 + 0.504167
NA PP3926 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS4431333 768 + 0.614583
NA PP4764 histone deacetylase family proteinchromosome CDS5424400 915 + 0.663388
NA PP2780 3-oxoacyl-(acyl-carrier-protein) synthase IIchromosome CDS3165566 1299 + 0.647421
NA PP2737 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3120688 753 - 0.678619
NA PP1852 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS2076406 750 - 0.636
NA PP3194 conserved hypothetical proteinchromosome CDS3622706 1344 - 0.654018
NA PP4243 pyoverdine synthetasechromosome CDS4818235 12954 - 0.664428
NA PP1441 methyltransferase, putativechromosome CDS1640943 744 - 0.610215
NA PP3188 hypothetical proteinchromosome CDS3616973 1170 + 0.649573
NA PP2562 conserved hypothetical proteinchromosome CDS2921966 486 + 0.631687
NA PP2540 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS2884533 777 + 0.644788
NA PP3205 fumarylacetoacetate hydrolase family proteinchromosome CDS3638002 993 + 0.672709
NA PP2002 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2270403 774 + 0.651163
NA PP3844 D-aminopeptidase putativechromosome CDS4366912 1134 - 0.604056
NA PP2784 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3171726 765 + 0.610458
NA PP4466 dioxygenase, TauD/TfdA familychromosome CDS5070012 873 - 0.532646
NA PP3788 non-ribosomal peptide synthetase, putativechromosome CDS4315916 1554 + 0.593308
NA PP3553 AMP-binding domain proteinchromosome CDS4028620 1623 + 0.64695
NA PP2927 conserved hypothetical proteinchromosome CDS3328447 1047 + 0.653295
NA PP0763 medium-chain-fatty-acid CoA ligasechromosome CDS878470 1683 + 0.629234
NA PP2317 ABC transporter, ATP-binding protein, putativechromosome CDS2647316 687 - 0.672489
NA PP2652 hydratase/decarboxylase, putativechromosome CDS3040395 786 + 0.627226
NA PP1826 hydrolase, isochorismatase familychromosome CDS2051085 591 - 0.612521
NA PP2794 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3183510 768 + 0.701823
NA PP2882 2-hydroxychromene-2-carboxylate isomerase, putativechromosome CDS3281476 615 + 0.63252
NA PP1794 hypothetical proteinchromosome CDS2014042 1443 - 0.590437
NA PP4620 fumarylacetoacetasechromosome CDS5241882 1293 - 0.662026
NA PP2259 sigma-54 dependent transcriptional regulatorchromosome CDS2576616 1776 - 0.660473
NA PP1274 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS1456168 813 - 0.671587
NA PP2711 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3101364 807 + 0.630731
NA PP4180 conserved hypothetical proteinchromosome CDS4723632 483 - 0.63147
NA PP3972 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4480131 1326 + 0.579186
NA PP2045 metallo-beta-lactamase family proteinchromosome CDS2325339 1962 - 0.640163
NA PP2561 secreted hemolysin-type calcium-binding bacteriocin, putativechromosome CDS2910945 10860 + 0.64558
NA PP2781 beta-ketoacyl synthasechromosome CDS3166735 1338 + 0.649477
NA PP4220 non-ribosomal peptide synthetase domain protein, putativechromosome CDS4779427 7887 - 0.654495
NA PP2723 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3109320 858 - 0.601399
NA PP1580 conserved hypothetical proteinchromosome CDS1772258 456 + 0.578947
NA PP4063 long-chain-fatty-acid-CoA ligase, putativechromosome CDS4586129 1683 - 0.639929
NA PP1951 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2207786 828 + 0.549517
NA PP2316 ABC transporter, permease protein, putativechromosome CDS2644812 2499 - 0.672669
NA PP2555 conserved hypothetical proteinchromosome CDS2902892 681 - 0.649046
NA PP5255 hydrolase, isochorismatase familychromosome CDS5998507 630 - 0.612698
NA PP5248 hydrolase, isochorismatase familychromosome CDS5990028 630 - 0.596825
NA PP1440 methyltransferase, putativechromosome CDS1639990 957 - 0.654127
NA PP4105 conserved hypothetical proteinchromosome CDS4639861 498 - 0.624498
NA PP3873 hypothetical proteinchromosome CDS4395801 516 - 0.583333
NA PP2777 acyl carrier protein, putativechromosome CDS3162630 570 + 0.603509
NA PP3942 maleate cis-trans isomerasechromosome CDS4444846 753 - 0.645418
NA PP1535 methyltransferase, putativechromosome CDS1739819 465 - 0.608602
NA PP1763 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1967246 741 - 0.65722
NA PP5340 acetylpolyamine aminohydrolasechromosome CDS6087769 1044 + 0.640805
NA PP2233 hydrolase, isochorismatase familychromosome CDS2540833 549 - 0.644809
NA PP1953 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2209753 810 + 0.579012
NA PP2795 AMP-binding domain proteinchromosome CDS3184361 1647 + 0.660595
NA PP1709 fumarylacetoacetate hydrolase family proteinchromosome CDS1908537 711 - 0.666667
NA PP3281 phenylacetic acid degradation protein PaaI, putativechromosome CDS3715845 441 - 0.664399
NA PP5153 fumarylacetoacetate hydrolase family proteinchromosome CDS5879170 666 - 0.630631
NA PP2783 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS3170992 738 + 0.617886
NA PP1817 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS2042730 762 + 0.664042
NA PP2507 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS2854231 717 + 0.616457
NA PP3807 thioesterasechromosome CDS4334829 720 - 0.666667
NA PP2815 conserved hypothetical proteinchromosome CDS3210961 1254 + 0.650718
NA PP2727 C-factor, putativechromosome CDS3112373 771 - 0.636835
NA PP0592 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS690720 687 - 0.609898
NA PP3277 phenylacetic acid degradation protein PaaB, putativechromosome CDS3711696 282 - 0.624114
NA PP5243 hydrolase, isochorismatase familychromosome CDS5984484 627 - 0.610845
NA PP4221 non-ribosomal peptide synthetasechromosome CDS4787315 6525 - 0.658697
NA PP0711 hydrolase, isochorismatase familychromosome CDS826808 621 + 0.590982
NA PP3927 conserved hypothetical proteinchromosome CDS4432101 822 - 0.627737
NA PP3303 3-oxoacyl-(acyl-carrier-protein) synthase II, putativechromosome CDS3738245 1314 + 0.627093
NA PP3796 L-ornithine N5-oxygenasechromosome CDS4325521 1335 + 0.630712
NA PP3458 long-chain-fatty-acid-CoA ligase, putativechromosome CDS3920074 1689 - 0.643576
NA PP2778 3-oxoacyl-(acyl-carrier-protein) synthase IIchromosome CDS3163208 1278 + 0.617371
NA PP1513 conserved hypothetical proteinchromosome CDS1717298 777 + 0.66538
NA PP2814 conserved hypothetical proteinchromosome CDS3209853 870 - 0.605747
NA PP2881 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3280716 732 + 0.625683
NA PP1184 dienelactone hydrolase family proteinchromosome CDS1359212 798 - 0.617795
NA PP4632 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS5255469 738 + 0.631436
NA PP3184 hypothetical proteinchromosome CDS3610285 3396 - 0.627208
NA PP1955 cytochrome P450 family proteinchromosome CDS2211866 1236 + 0.550971
NA PP1524 rRNA large subunit methyltransferase A, putativechromosome CDS1729120 813 - 0.690037
NA PP4178 dienelactone hydrolase family proteinchromosome CDS4720869 726 - 0.610193
NA PP3941 hydrolase, isochorismatase familychromosome CDS4444189 642 - 0.660436
NA PP3547 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS4021361 747 - 0.659973
NA PP1745 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1945117 810 + 0.649383
NA PP4181 conserved hypothetical proteinchromosome CDS4724111 477 - 0.628931
NA PP3015 medium-chain acyl-CoA ligase domain proteinchromosome CDS3404307 204 + 0.602941
NA PP2205 copper resistance protein, CopA familychromosome CDS2510003 1725 - 0.662609
NA PP3849 calcium-binding protein, hemolysin-typechromosome CDS4372649 2307 + 0.475943
NA PP4143 conserved hypothetical proteinchromosome CDS4679970 801 - 0.66417
NA PP0903 conserved hypothetical proteinchromosome CDS1043607 681 + 0.581498
NA PP1950 conserved hypothetical proteinchromosome CDS2206567 1179 + 0.508906
NA PP2038 long-chain-fatty-acid--CoA ligase, putativechromosome CDS2316044 1698 + 0.630153
NA PP2175 3-oxoacyl-(acyl-carrier-protein) reductase, putativechromosome CDS2480639 705 - 0.619858
NA PP3166 catechol 1,2-dioxygenasechromosome CDS3587162 915 + 0.654645
NA PP1820 benzoate transport proteinchromosome CDS2046821 1197 - 0.656642
NA PP1987 methlytransferase, UbiE/COQ5 familychromosome CDS2252860 765 + 0.666667
NA PP0578 methyltransferase, putativechromosome CDS675659 750 - 0.652
NA PP3976 hydrolase, isochorismatase familychromosome CDS4483669 687 + 0.588064
NA PP0581 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS677642 1374 - 0.66885
NA PP3806 hydrolase, isochorismatase familychromosome CDS4334221 552 - 0.639493
NA PP0546 sigma-54 dependent transcriptional regulatorchromosome CDS633531 2178 + 0.650597
NA PP2807 conserved hypothetical proteinchromosome CDS3199762 888 + 0.622748
PP0081 conserved hypothetical proteinchromosome CDS91077 372 + 0.612903
PP0140 conserved hypothetical proteinchromosome CDS148085 939 - 0.620873
PP0141 ABC transporter, ATP-binding protein, putativechromosome CDS149027 792 - 0.650253
PP0142 ABC transporter, permease protein, putativechromosome CDS149815 1134 - 0.63933
PP0169 dioxygenase, TauD/TfdA familychromosome CDS221228 900 + 0.61
PP0244 conserved hypothetical proteinchromosome CDS298156 384 - 0.648438
PP0279 conserved hypothetical proteinchromosome CDS336543 1206 - 0.664179
acoR PP0557 acetoin catabolism regulatory proteinchromosome CDS646376 1854 + 0.667745
acpP PP1915 acyl carrier proteinchromosome CDS2158592 237 + 0.527426
bdhA PP3073 3-hydroxybutyrate dehydrogenasechromosome CDS3456515 771 - 0.635538
benB PP3162 benzoate dioxygenase, beta subunitchromosome CDS3583282 486 + 0.606996
benD PP3164 cis-diol dehydrogenasechromosome CDS3584985 762 + 0.671916
benE-1 PP2035 benzoate transport proteinchromosome CDS2312870 1215 - 0.662551
benE-2 PP3167 benzoate transport proteinchromosome CDS3588151 1272 + 0.667453
bioC biotin biosynthesis protein BioCchromosome CDS443008 819 + 0.663004
catA PP3713 catechol 1,2-dioxygenasechromosome CDS4235833 936 - 0.65812
catC PP3714 muconolactone isomerasechromosome CDS4236812 291 - 0.611684
copA PP5380 copper resistance protein Achromosome CDS6131833 2010 - 0.579104
cumA PP1034 multicopper oxidasechromosome CDS1180946 1407 + 0.631841
elbB PP5220 enhancing lycopene biosynthesis protein 2chromosome CDS5955100 666 + 0.612613
fabB PP4175 3-oxoacyl-(acyl-carrier-protein) synthase Ichromosome CDS4717435 1221 + 0.625717
fabF PP1916 3-oxoacyl-(acyl-carrier-protein) synthase IIchromosome CDS2159016 1245 + 0.644177
fabG PP1914 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS2157648 741 + 0.634278
fadB2x PP2214 3-hydroxyacyl-CoA dehydrogenase FadB2xchromosome CDS2524975 768 + 0.644531
fadD PP4549 long-chain-fatty-acid-CoA ligasechromosome CDS5171260 1698 - 0.606007
fadD2 PP4550 long-chain-fatty-acid--CoA ligasechromosome CDS5173289 1689 - 0.626998
fcs PP3356 feruloyl-CoA-synthetasechromosome CDS3794567 1770 - 0.660452
hmgA PP4621 homogentisate 1,2-dioxygenasechromosome CDS5243178 1302 - 0.638249
hutI PP5030 imidazolonepropionasechromosome CDS5731341 1206 - 0.662521
hyuA PP3515 hydantoin utilization protein Achromosome CDS3987480 2085 + 0.670504
hyuB PP3514 hydantoin utilization protein Bchromosome CDS3985721 1746 + 0.639175
metW PP5098 methionine biosynthesis proteinchromosome CDS5821371 639 + 0.616588
pcaG PP4655 protocatechuate 3,4-dioxygenase, alpha subunitchromosome CDS5281003 606 - 0.613861
pcaH PP4656 protocatechuate 3,4-dioxygenase, beta subunitchromosome CDS5281619 720 - 0.625
ppsD PP4219 non-ribosomal siderophore peptide synthetasechromosome CDS4768854 10413 - 0.656967
pvdE PP4216 pyoverdine ABC export system, permease/ATP-binding proteinchromosome CDS4763603 1659 + 0.628089
tauD alpha-ketoglutarate-dependent taurine dioxygenasechromosome CDS284615 834 - 0.635492
tpm PP1870 thiopurine s-methyltransferasechromosome CDS2093311 651 + 0.626728
ttg2A PP0958 toluene tolerance ABC efflux transporter, ATP-binding proteinchromosome CDS1099812 810 + 0.633333
ttg2B PP0959 toluene tolerance ABC efflux transporter, permeasechromosome CDS1100618 801 + 0.612984
ttg2C PP0960 toluene tolerance ABC transporter, periplasmic substrate-binding proteinchromosome CDS1101418 486 + 0.572016
ttg2D PP0961 toluene-tolerance proteinchromosome CDS1101913 648 + 0.595679