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2024-05-25 09:53:02

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 86

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Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
SO0151 conserved hypothetical proteinSubName: Full=SAM-dependent methyltransferase type 11; chromosome CDS159448 768 + 0.483073
SO0180 hypothetical proteinSubName: Full=Phytanoyl-CoA dioxygenase PhyH; EC=2.1.1.-; chromosome CDS184305 2010 + 0.479104
SO0357 metallo-beta-lactamase superfamily protein chromosome CDS365794 1854 + 0.454693
SO0438 oxidoreductase, short chain dehydrogenase/reductase familySubName: Full=Oxidoreductase short chain dehydrogenase/reductase family; chromosome CDS463857 804 + 0.506219
SO0762 isochorismatase family proteinSubName: Full=Isochorismate hydrolase family protein; chromosome CDS776916 543 + 0.475138
SO0772 oxidoreductase, short chain dehydrogenase/reductase familySubName: Full=Dihydrofolate reductase FolM; EC=1.5.1.3; chromosome CDS785081 720 + 0.481944
SO0784 hypothetical protein chromosome CDS799567 411 - 0.493917
SO0789 conserved hypothetical proteinSubName: Full=Short-chain dehydrogenase/reductase family protein; chromosome CDS803222 618 - 0.475728
SO0865 conserved hypothetical proteinSubName: Full=Major curlin subunit CsgA; chromosome CDS893523 1509 - 0.45063
SO0964 conserved hypothetical protein chromosome CDS998306 207 - 0.487923
SO0967 dienelactone hydrolase family protein chromosome CDS999715 519 - 0.499037
SO0972 conserved hypothetical proteinSubName: Full=SAM dependent methyltransferase; chromosome CDS1004232 534 + 0.451311
SO1006 dienelactone hydrolase family proteinSubName: Full=Dienelactone hydrolase family protein YghX; chromosome CDS1040789 963 + 0.521288
SO1068 conserved hypothetical proteinSubName: Full=4-hydroxybenzoyl-CoA thioesterase family protein; chromosome CDS1108836 438 + 0.484018
SO1100 extracellular solute-binding protein, family 7SubName: Full=TRAP transporter substrate-binding component; chromosome CDS1141864 1113 + 0.488769
SO1294 ribosomal RNA large subunit methyltransferase A, putativeSubName: Full=Ribosomal RNA large subunit methyltransferase A; EC=2.1.1.187; chromosome CDS1344013 828 + 0.451691
SO1409 conserved hypothetical proteinSubName: Full=SAM-dependent methyltransferase; chromosome CDS1465778 579 - 0.483592
SO1585 fumarylacetoacetate hydrolase family proteinSubName: Full=Fumarylacetoacetate hydrolase family protein; chromosome CDS1661674 627 + 0.467305
SO1599 multi-domain beta-ketoacyl synthaseSubName: Full=Multi-domain beta-ketoacyl synthase PfaC; chromosome CDS1670313 5892 - 0.520197
SO1602 multi-domain beta-ketoacyl synthaseSubName: Full=Omega-3 polyunsaturated fatty acid synthase subunit PfaA; chromosome CDS1678564 7596 - 0.519616
SO1606 metallo-beta-lactamase superfamily proteinSubName: Full=Alkyl sulfatase; chromosome CDS1689454 1992 - 0.460843
SO1670 fumarylacetoacetate hydrolase family proteinSubName: Full=Fumarylacetoacetate hydrolase FahA; EC=3.7.1.2; chromosome CDS1756837 987 + 0.487335
SO1683 3-oxoacyl-(acyl-carrier-protein) reductase, putativeSubName: Full=3-hydroxyacyl-CoA dehydrogenase IvdG; EC=1.1.1.35; chromosome CDS1770317 759 + 0.496706
SO1744 AMP-binding proteinSubName: Full=Polyolefin biosynthetic pathway AMP transfer protein OleC; chromosome CDS1823773 1845 + 0.496477
SO1815 histone deacetylase/AcuC/AphA family proteinSubName: Full=Histone deacetylase superfamily protein; chromosome CDS1904744 915 - 0.461202
SO1873 conserved hypothetical proteinSubName: Full=Short-chain dehydrogenases/reductases family protein; chromosome CDS1970320 606 - 0.405941
SO1911 oxidoreductase, short chain dehydrogenase/reductase family chromosome CDS2009613 864 + 0.46875
SO1963 conserved hypothetical proteinSubName: Full=Homogentisate 1,2-dioxygenase HmgA; EC=1.13.11.5; chromosome CDS2068671 1161 - 0.475452
SO1971 AMP-binding family proteinSubName: Full=AMP-dependent synthetase and ligase family protein; EC=6.2.1.2; chromosome CDS2075392 1737 + 0.466897
SO1988 conserved hypothetical proteinSubName: Full=SAM-dependent methyltransferase type 11; chromosome CDS2090538 615 + 0.461789
SO2397 oxidoreductase, short-chain dehydrogenase/reductase familySubName: Full=2,4-dienoyl-CoA reductase; EC=1.3.1.34; chromosome CDS2501539 828 - 0.493961
SO2435 methyltransferase, putativeRecName: Full=tRNA (cmo5U34)-methyltransferase; EC=2.1.1.-; chromosome CDS2546487 732 + 0.459016
SO2436 methyltransferase, putativeRecName: Full=tRNA (mo5U34)-methyltransferase; EC=2.1.1.-; chromosome CDS2547215 993 + 0.455186
SO2460 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2578794 1185 + 0.424473
SO2562 conserved hypothetical proteinSubName: Full=SAM-dependent methyltransferase type 11; chromosome CDS2691603 735 - 0.472109
SO2721 conserved hypothetical proteinSubName: Full=4-hydroxybenzoyl-CoA thioesterase family protein; chromosome CDS2838879 480 - 0.458333
SO2722 conserved hypothetical proteinSubName: Full=4-hydroxybenzoyl-CoA thioesterase family protein; chromosome CDS2839345 528 - 0.469697
SO2813 oxidoreductase, short chain dehydrogenase/reductase family chromosome CDS2934468 765 - 0.494118
SO2876 hypothetical proteinSubName: Full=Predicted lipoprotein; chromosome CDS2995390 1953 + 0.491551
SO2905 O-methyltransferase, putativeSubName: Full=O-methyltransferase; chromosome CDS3031935 1074 + 0.463687
SO2926 ABC transporter, permease, putativeSubName: Full=Putative ABC-type fatty acid export system permease component YbbP; chromosome CDS3057041 2508 - 0.504785
SO2927 ABC transporter, ATP-binding proteinSubName: Full=Putative ABC-type fatty acid export system ATPase component YbbA; chromosome CDS3059552 762 - 0.494751
SO2935 oxidoreductase, short-chain dehydrogenase/reductase familySubName: Full=Oxidoreductase short-chain dehydrogenase/reductase family; chromosome CDS3071808 738 + 0.482385
SO3032 siderophore biosynthesis protein, putative chromosome CDS3142234 1806 + 0.482835
SO3085 conserved domain proteinSubName: Full=Predicted periplasmic protein; chromosome CDS3209410 579 + 0.43696
SO3148 conserved hypothetical protein chromosome CDS3285131 1275 + 0.509804
SO3149 conserved hypothetical proteinSubName: Full=Periplasmic amidohydrolase family protein; chromosome CDS3286405 1287 + 0.487179
SO3263 3-oxoacyl-(acyl-carrier-protein) reductase, putative chromosome CDS3399505 768 + 0.445312
SO3264 hypothetical proteinSubName: Full=SAM-dependent methyltransferase in polysaccharide biosynthesis locus; chromosome CDS3400292 1188 + 0.43771
SO3266 conserved domain proteinSubName: Full=SAM-dependent methyltransferase in polysaccharide biosynthesis locus; chromosome CDS3402738 1203 - 0.373234
SO3267 conserved domain proteinSubName: Full=SAM-dependent methyltransferase; chromosome CDS3403961 912 - 0.41557
SO3382 oxidoreductase, short-chain dehydrogenase/reductase familySubName: Full=Oxidoreductase short-chain dehydrogenase/reductase family; chromosome CDS3520699 801 - 0.454432
SO3402 hypothetical protein chromosome CDS3541225 129 - 0.449612
SO3951 conserved hypothetical proteinSubName: Full=ABC-type phospholipid uptake (Salvage) system periplasmic chaperone MlaC; chromosome CDS4095270 654 - 0.446483
SO3952 mce-related proteinSubName: Full=ABC-type phospholipid uptake (Salvage) system substrate-binding component MlaD; chromosome CDS4095935 474 - 0.434599
SO3953 conserved hypothetical protein TIGR00056SubName: Full=ABC-type phospholipid uptake (Salvage) system permease component MlaE; chromosome CDS4096465 786 - 0.506361
SO3954 ABC transporter, ATP-binding protein, putativeSubName: Full=ABC-type phospholipid uptake (Salvage) system ATPase component MlaF; chromosome CDS4097247 819 - 0.499389
SO4042 hydratase/decarboxylase family proteinSubName: Full=Hydratase/decarboxylase family protein; chromosome CDS4195819 825 + 0.489697
SO4069 conserved hypothetical proteinSubName: Full=SAM-dependent methyltransferase type 11; chromosome CDS4224037 786 - 0.438931
SO4143 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4299367 1725 + 0.482899
SO4170 C-factor, putativeSubName: Full=Cell-cell signaling protein C-factor; chromosome CDS4343403 711 + 0.464135
SO4242 conserved hypothetical proteinSubName: Full=4-hydroxybenzoyl-CoA thioesterase family protein YigI; chromosome CDS4420864 465 + 0.490323
SO4368 acyl carrier protein, putativeSubName: Full=Acyl carrier protein; chromosome CDS4563328 255 + 0.427451
SO4369 acyl carrier protein, putativeRecName: Full=Acyl carrier protein; Short=ACP; chromosome CDS4563592 249 + 0.441767
SO4380 3-oxoacyl-(acyl-carrier-protein) synthase II, putativeSubName: Full=Beta-ketoacyl synthase; chromosome CDS4575430 1218 + 0.536946
SO4462 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4650037 396 - 0.45202
SO4479 sigma-54 dependent transcriptional regulatorSubName: Full=Sigma54 dependent transcriptional regulator with GAF sensory domain Fis family; chromosome CDS4667254 1851 - 0.507293
SO4576 O-succinylbenzoic acid--CoA ligase, putative chromosome CDS4770745 1395 + 0.488889
SO4590 isochorismatase family proteinSubName: Full=Isochorismatase family protein; chromosome CDS4784767 534 + 0.468165
SO4658 conserved hypothetical protein chromosome CDS4857581 588 - 0.539116
SO4713 menaquinone-specific isochorismate synthase, putativeSubName: Full=Menaquinone-specific isochorismate synthase MenF; EC=5.4.4.2; chromosome CDS4916550 1359 + 0.476085
acpP acyl carrier proteinRecName: Full=Acyl carrier protein; Short=ACP; chromosome CDS2897778 234 - 0.42735
alcA siderophore biosynthesis proteinSubName: Full=Putrescine monooxygenase PubA; chromosome CDS3140006 1497 + 0.460922
bioC biotin synthesis protein BioCRecName: Full=Malonyl-[acyl-carrier protein] O-methyltransferase; Short=Malonyl-ACP O-methyltransferase; EC=2.1.1.197; AltName: Full=Biotin synthesis protein BioC; chromosome CDS2853336 828 - 0.4843
elbB enhancing lycopene biosynthesis proteinSubName: Full=Isoprenoid biosynthesis protein ElbB; chromosome CDS4868974 657 + 0.455099
fabB 3-oxoacyl-(acyl-carrier-protein) synthase I chromosome CDS3191404 1212 - 0.475248
fabF-1 3-oxoacyl-(acyl-carrier-protein) synthase IIRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; chromosome CDS2896330 1239 - 0.497982
fabF-2 3-oxoacyl-(acyl-carrier-protein) synthase IISubName: Full=3-oxoacyl-(Acyl-carrier-protein) synthase II FabF; EC=2.3.1.179; EC=2.3.1.41; chromosome CDS4578026 1263 + 0.534442
fabG-1 3-oxoacyl-(acyl-carrier-protein) reductaseSubName: Full=3-oxoacyl-(Acyl-carrier-protein) reductase FabG; EC=1.1.1.100; chromosome CDS2898175 747 - 0.45917
fabG-2 3-oxoacyl-(acyl-carrier-protein) reductaseSubName: Full=3-oxoacyl-(Acyl-carrier-protein) reductase FabG; EC=1.1.1.100; chromosome CDS4577300 726 + 0.526171
fadD-1 long-chain-fatty-acid--CoA ligaseSubName: Full=Long chain fatty acid CoA ligase FadD; EC=6.2.1.3; chromosome CDS2707886 1674 - 0.454002
fadD-2 long-chain-fatty-acid--CoA ligaseSubName: Full=Long chain fatty acid CoA ligase FadD; EC=6.2.1.3; chromosome CDS3816560 1599 + 0.459037
hutI imidazolonepropionaseRecName: Full=Imidazolonepropionase; EC=3.5.2.7; AltName: Full=Imidazolone-5-propionate hydrolase; chromosome CDS102534 1227 - 0.507742
rrmA ribosomal RNA large subunit methyltransferase ASubName: Full=23S rRNA (Guanine745-N1)-methyltransferase RlmA; EC=2.1.1.187; chromosome CDS2910366 816 - 0.435049
smtA smtA proteinSubName: Full=SAM-dependent methyltransferase SmtA; chromosome CDS578052 783 - 0.476373
tpm thiopurine S-methyltransferaseRecName: Full=Thiopurine S-methyltransferase; EC=2.1.1.67; AltName: Full=Thiopurine methyltransferase; chromosome CDS608019 657 + 0.468798