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2024-05-11 17:21:49

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Escherichia coli W3110, K-12

Number of genes found: 82

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Escherichia coli W3110, K-12
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
acpP acyl carrier proteinRecName: Full=Acyl carrier protein; Short=ACP; AltName: Full=Cytosolic-activating factor; Short=CAF; AltName: Full=Fatty acid synthase acyl carrier protein; chromosome CDS1153192 237 + 0.481013
bioC predicted methltransferase, enzyme of biotin synthesisRecName: Full=Malonyl-[acyl-carrier protein] O-methyltransferase; Short=Malonyl-ACP O-methyltransferase; EC=2.1.1.197; AltName: Full=Biotin synthesis protein BioC; chromosome CDS811944 756 + 0.564815
caiC predicted crotonobetaine CoA ligase:carnitine CoA ligaseRecName: Full=Probable crotonobetaine/carnitine-CoA ligase; EC=6.2.1.-; chromosome CDS36271 1569 - 0.509879
cchB predicted carboxysome structural protein, ethanolamine utilization proteinRecName: Full=Ethanolamine utilization protein EutN; chromosome CDS2570419 288 - 0.53125
ccmA heme exporter subunitRecName: Full=Cytochrome c biogenesis ATP-binding export protein CcmA; EC=3.6.3.41; AltName: Full=Heme exporter protein A; chromosome CDS2300355 624 - 0.559295
cueO multicopper oxidase (laccase)RecName: Full=Blue copper oxidase CueO; AltName: Full=Copper efflux oxidase; Flags: Precursor; chromosome CDS137083 1551 + 0.546744
dhaR predicted DNA-binding transcriptional regulator, dihydroxyacetoneRecName: Full=PTS-dependent dihydroxyacetone kinase operon regulatory protein; chromosome CDS1252643 1920 + 0.514583
elbB isoprenoid biosynthesis protein with amidotransferase-like domainRecName: Full=Enhancing lycopene biosynthesis protein 2; AltName: Full=Sigma cross-reacting protein 27A; Short=SCRP-27A; chromosome CDS3349661 654 - 0.527523
entA 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenaseRecName: Full=2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; EC=1.3.1.28; chromosome CDS627774 747 + 0.579652
entB isochorismataseRecName: Full=Isochorismatase; EC=3.3.2.1; AltName: Full=2,3 dihydro-2,3 dihydroxybenzoate synthase; AltName: Full=Enterobactin synthase component B; AltName: Full=Enterochelin synthase B; AltName: Full=Isochorismate lyase; chromosome CDS626917 858 + 0.553613
entC isochorismate synthase 1RecName: Full=Isochorismate synthase EntC; EC=5.4.4.2; AltName: Full=Isochorismate mutase; chromosome CDS624108 1176 + 0.564626
entD phosphopantetheinyltransferase component of enterobactin synthase multienzyme complexRecName: Full=4-phosphopantetheinyl transferase EntD; EC=2.7.8.-; AltName: Full=Enterobactin synthase component D; AltName: Full=Enterochelin synthase D; chromosome CDS608682 630 - 0.474603
entE 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complexRecName: Full=Enterobactin synthase component E; AltName: Full=Enterochelin synthase E; Includes: RecName: Full=2,3-dihydroxybenzoate-AMP ligase; EC=2.7.7.58; AltName: Full=Dihydroxybenzoic acid-activating enzyme; Includes: RecName: Full=S-dihydroxybenzoyltransferase; EC=2.3.1.-; chromosome CDS625293 1611 + 0.560521
entF enterobactin synthase multienzyme complex component, ATP-dependentRecName: Full=Enterobactin synthase component F; EC=2.7.7.-; AltName: Full=Enterochelin synthase F; AltName: Full=Serine-activating enzyme; AltName: Full=Seryl-AMP ligase; chromosome CDS613380 3882 + 0.56543
fabB 3-oxoacyl-[acyl-carrier-protein] synthase IRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 1; EC=2.3.1.41; AltName: Full=3-oxoacyl-[acyl-carrier-protein] synthase I; AltName: Full=Beta-ketoacyl-ACP synthase I; Short=KAS I; chromosome CDS2445831 1221 - 0.56593
fabF 3-oxoacyl-[acyl-carrier-protein] synthase IIRecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; AltName: Full=3-oxoacyl-[acyl-carrier-protein] synthase II; AltName: Full=Beta-ketoacyl-ACP synthase II; Short=KAS II; chromosome CDS1153516 1242 + 0.533011
fabG 3-oxoacyl-[acyl-carrier-protein] reductaseRecName: Full=3-oxoacyl-[acyl-carrier-protein] reductase FabG; EC=1.1.1.100; AltName: Full=3-ketoacyl-acyl carrier protein reductase; AltName: Full=Beta-Ketoacyl-acyl carrier protein reductase; AltName: Full=Beta-ketoacyl-ACP reductase; chromosome CDS1152247 735 + 0.515646
fadD acyl-CoA synthetaseRecName: Full=Long-chain-fatty-acid--CoA ligase; EC=6.2.1.3; AltName: Full=Long-chain acyl-CoA synthetase; Short=Acyl-CoA synthetase; chromosome CDS1889775 1686 - 0.511862
folM dihydrofolate reductase isozymeRecName: Full=Dihydrofolate reductase FolM; Short=DHFR; EC=1.5.1.3; chromosome CDS1682690 723 + 0.50899
hcaB 2,3-dihydroxy-2,3-dihydrophenylpropionatedehydro genaseRecName: Full=3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase; EC=1.3.1.87; AltName: Full=2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; AltName: Full=3-(cis-5,6-dihydroxycyclohexa-1,3-dien-1-yl)propanoate dehydrogenase; AltName: Full=CI-dihydrodiol dehydrogenase; AltName: Full=Cis-3-(2-carboxyethenyl)-3,5-cyclohexadiene-1,2-diol dehydrogenase; AltName: Full=Cis-3-(2-carboxyethyl)-3,5-cyclohexadiene-1,2-diol dehydrogenase; AltName: Full=PP-dihydrodiol dehydrogenase; chromosome CDS2669881 813 + 0.560886
hcaF 3-phenylpropionate dioxygenase, small (beta) subunitRecName: Full=3-phenylpropionate/cinnamic acid dioxygenase subunit beta; EC=1.14.12.19; AltName: Full=Digoxigenin subunit beta; chromosome CDS2669046 519 + 0.522158
hdhA 7alpha-hydroxysteroid dehydrogenase, NAD-dependentRecName: Full=7-alpha-hydroxysteroid dehydrogenase; Short=7-alpha-HSDH; EC=1.1.1.159; chromosome CDS1698987 768 - 0.472656
idnO 5-keto-D-gluconate-5-reductaseRecName: Full=Gluconate 5-dehydrogenase; EC=1.1.1.69; AltName: Full=5-keto-D-gluconate 5-reductase; chromosome CDS4497267 765 - 0.494118
kduD 2-deoxy-D-gluconate 3-dehydrogenaseRecName: Full=2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; EC=1.1.1.127; AltName: Full=2-keto-3-deoxygluconate 5-dehydrogenase; AltName: Full=2-keto-3-deoxygluconate oxidoreductase; Short=KDG oxidoreductase; chromosome CDS2981153 762 - 0.519685
macA macrolide transporter subunit, membrane fusion protein (MFP) componentRecName: Full=Macrolide export protein MacA; chromosome CDS919657 1116 + 0.530466
mdtA multidrug efflux system, subunit ARecName: Full=Multidrug resistance protein MdtA; AltName: Full=Multidrug transporter MdtA; Flags: Precursor; chromosome CDS2156153 1248 + 0.552885
menE o-succinylbenzoate-CoA ligaseRecName: Full=2-succinylbenzoate--CoA ligase; EC=6.2.1.26; AltName: Full=o-succinylbenzoyl-CoA synthetase; Short=OSB-CoA synthetase; chromosome CDS2378318 1356 - 0.560472
menF isochorismate synthase 2RecName: Full=Menaquinone-specific isochorismate synthase; EC=5.4.4.2; AltName: Full=Isochorismate mutase; chromosome CDS2384018 1296 - 0.533951
mhpD 2-keto-4-pentenoate hydrataseRecName: Full=2-keto-4-pentenoate hydratase; EC=4.2.1.80; AltName: Full=2-hydroxypentadienoic acid hydratase; chromosome CDS371339 810 + 0.551852
mhpF acetaldehyde-CoA dehydrogenase II, NAD-bindingRecName: Full=Acetaldehyde dehydrogenase; EC=1.2.1.10; AltName: Full=Acetaldehyde dehydrogenase [acetylating]; chromosome CDS372145 951 + 0.54469
nhoA N-hydroxyarylamine O-acetyltransferaseRecName: Full=N-hydroxyarylamine O-acetyltransferase; EC=2.3.1.118; AltName: Full=Arylamine N-acetyltransferase; AltName: Full=Arylhydroxamate N,O-acetyltransferase; AltName: Full=NAT102; chromosome CDS1535738 846 + 0.514184
paaB predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradationRecName: Full=1,2-phenylacetyl-CoA epoxidase, subunit B; AltName: Full=1,2-phenylacetyl-CoA monooxygenase, subunit B; chromosome CDS1456582 288 + 0.496528
paaI predicted thioesteraseRecName: Full=Acyl-coenzyme A thioesterase PaaI; EC=3.1.2.-; AltName: Full=Phenylacetic acid degradation protein PaaI; chromosome CDS1462185 423 + 0.515366
pncA nicotinamidase/pyrazinamidaseRecName: Full=Pyrazinamidase/nicotinamidase; Short=PZAase; EC=3.5.1.-; EC=3.5.1.19; AltName: Full=Nicotine deamidase; Short=NAMase; chromosome CDS1853601 642 + 0.531153
rrmA 23S rRNA m1G745 methyltransferaseRecName: Full=23S rRNA (guanine(745)-N(1))-methyltransferase; EC=2.1.1.187; AltName: Full=23S rRNA m1G745 methyltransferase; AltName: Full=Ribosomal RNA large subunit methyltransferase A; chromosome CDS1907965 810 - 0.51358
smtA S-adenosylmethionine-dependentmethyltransferaseRecName: Full=Protein SmtA; chromosome CDS973959 786 + 0.515267
srlD sorbitol-6-phosphate dehydrogenaseRecName: Full=Sorbitol-6-phosphate 2-dehydrogenase; EC=1.1.1.140; AltName: Full=Glucitol-6-phosphate dehydrogenase; AltName: Full=Ketosephosphate reductase; chromosome CDS2826393 780 + 0.533333
sufI repressor protein for FtsIRecName: Full=Cell division protein FtsP; Flags: Precursor; chromosome CDS3159913 1413 - 0.564048
tauD taurine dioxygenase, 2-oxoglutarate-dependentRecName: Full=Alpha-ketoglutarate-dependent taurine dioxygenase; EC=1.14.11.17; AltName: Full=2-aminoethanesulfonate dioxygenase; AltName: Full=Sulfate starvation-induced protein 3; Short=SSI3; chromosome CDS387019 852 + 0.544601
tehB predicted S-adenosyl-L-methionine-dependent methyltransferaseRecName: Full=Tellurite methyltransferase; EC=2.1.1.265; AltName: Full=Chalcogen-detoxifying protein TehB; AltName: Full=Selenite methyltransferase; AltName: Full=Tellurite resistance protein TehB; chromosome CDS1503276 594 + 0.459596
tynA tyramine oxidase, copper-requiringRecName: Full=Primary amine oxidase; EC=1.4.3.21; AltName: Full=2-phenylethylamine oxidase; AltName: Full=Copper amine oxidase; AltName: Full=Tyramine oxidase; Flags: Precursor; chromosome CDS1450790 2274 - 0.506157
ucpA predicted oxidoredutase, sulfate metabolism proteinRecName: Full=Oxidoreductase UcpA; EC=1.-.-.-; chromosome CDS2549278 792 - 0.55303
yafE predicted S-adenosyl-L-methionine-dependent methyltransferaseRecName: Full=Uncharacterized protein YafE; chromosome CDS231926 624 + 0.490385
yafS predicted S-adenosyl-L-methionine-dependent methyltransferaseRecName: Full=Uncharacterized protein YafS; chromosome CDS234816 723 + 0.493776
ybbA predicted transporter subunitRecName: Full=Uncharacterized ABC transporter ATP-binding protein YbbA; chromosome CDS518957 687 + 0.56623
ybbO predicted oxidoreductase with NAD(P)-binding Rossmann-fold domainRecName: Full=Uncharacterized oxidoreductase YbbO; EC=1.-.-.-; chromosome CDS517564 810 - 0.54321
ybbP predicted inner membrane proteinRecName: Full=Uncharacterized ABC transporter permease YbbP; chromosome CDS519640 2415 + 0.575983
ybcY predicted SAM-dependent methyltransferaseRecName: Full=Putative uncharacterized protein YbcY; chromosome CDS581375 585 - 0.415385
ybdB conserved hypothetical proteinRecName: Full=Proofreading thioesterase EntH; EC=3.1.2.-; AltName: Full=Enterobactin synthase component H; AltName: Full=p15; chromosome CDS628523 414 + 0.567633
ybhF fused predicted transporter subunits and ATP-binding components of ABC superfamilyRecName: Full=Uncharacterized ABC transporter ATP-binding protein YbhF; chromosome CDS827667 1737 - 0.555556
ycaC predicted hydrolaseRecName: Full=Uncharacterized protein YcaC; chromosome CDS945353 627 - 0.46252
ycdL hypothetical protein chromosome CDS1072593 693 - 0.554113
ycgM predicted isomerase/hydrolaseRecName: Full=Uncharacterized protein YcgM; chromosome CDS1229656 660 + 0.519697
yciK predicted oxoacyl-(acyl carrier protein) reductase, EmrKY-TolC systemRecName: Full=Uncharacterized oxidoreductase YciK; EC=1.-.-.-; chromosome CDS1330068 759 - 0.524374
ydcO predicted benzoate transporterRecName: Full=Inner membrane protein YdcO; chromosome CDS1506619 1176 - 0.529762
ydhJ undecaprenyl pyrophosphate phosphataseRecName: Full=Uncharacterized protein YdhJ; chromosome CDS1722978 858 + 0.502331
ydiD short chain acyl-CoA synthetase, anaerobicRecName: Full=Short-chain-fatty-acid--CoA ligase; EC=6.2.1.-; AltName: Full=Acyl-CoA synthetase; chromosome CDS1784691 1701 + 0.49853
ydiI conserved hypothetical proteinRecName: Full=Esterase YdiI; EC=3.1.-.-; chromosome CDS1766936 411 - 0.515815
yecD predicted hydrolaseRecName: Full=Isochorismatase family protein YecD; EC=3.-.-.-; chromosome CDS1952546 567 + 0.530864
yecO predicted methyltransferaseRecName: Full=tRNA (cmo5U34)-methyltransferase; EC=2.1.1.-; chromosome CDS1954416 744 + 0.50672
yecP predicted methyltransferaseRecName: Full=tRNA (mo5U34)-methyltransferase; EC=2.1.1.-; chromosome CDS1955156 972 + 0.520576
yeiN conserved hypothetical proteinRecName: Full=Pseudouridine-5-phosphate glycosidase; Short=PsiMP glycosidase; EC=3.2.-.-; chromosome CDS2260763 939 - 0.497338
yfiC predicted methyltransferaseRecName: Full=tRNA1(Val) (adenine(37)-N6)-methyltransferase; EC=2.1.1.223; AltName: Full=tRNA m6A37 methyltransferase; chromosome CDS2710683 738 - 0.52439
ygcW predicted deoxygluconate dehydrogenaseRecName: Full=Uncharacterized oxidoreductase YgcW; EC=1.-.-.-; chromosome CDS2898144 786 - 0.456743
ygfF predicted NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domainRecName: Full=Uncharacterized oxidoreductase YgfF; EC=1.-.-.-; chromosome CDS3043814 744 - 0.549731
yghA predicted glutathionylspermidine synthase, with NAD(P)-binding Rossmann-fold domainRecName: Full=Uncharacterized oxidoreductase YghA; EC=1.-.-.-; chromosome CDS3148318 885 + 0.543503
yghX chromosome pseudo3145512 411 - 0.520681
yhiQ predicted SAM-dependent methyltransferaseRecName: Full=Ribosomal RNA small subunit methyltransferase J; EC=2.1.1.242; AltName: Full=16S rRNA m2G1516 methyltransferase; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase; chromosome CDS3997283 753 + 0.581673
yigI conserved hypothetical proteinRecName: Full=Uncharacterized protein YigI; chromosome CDS3631984 468 + 0.532051
yjcS predicted alkyl sulfataseRecName: Full=Putative alkyl/aryl-sulfatase YjcS; EC=3.1.6.-; Flags: Precursor; chromosome CDS4308091 1986 - 0.529204
yjgI predicted oxidoreductase with NAD(P)-binding Rossmann-fold domainRecName: Full=Cyclic-di-GMP-binding biofilm dispersal mediator protein; chromosome CDS4478020 714 - 0.543417
yjhP predicted methyltransferaseRecName: Full=Uncharacterized protein YjhP; chromosome CDS4537117 747 - 0.595716
ymfD predicted SAM-dependent methyltransferaseRecName: Full=Uncharacterized protein YmfD; chromosome CDS1198444 666 - 0.348348
ynbC predicted hydrolaseRecName: Full=Uncharacterized protein YnbC; chromosome CDS1480852 1758 + 0.509101
yohF predicted oxidoreductase with NAD(P)-binding Rossmann-fold domainRecName: Full=Uncharacterized oxidoreductase YohF; EC=1.-.-.-; chromosome CDS2229843 762 - 0.551181
yojI fused predicted multidrug transport subunits and membrane component and ATP-binding component of ABC superfamilyRecName: Full=ABC transporter ATP-binding protein YojI; chromosome CDS2310306 1644 - 0.534063
ypjA adhesin-like autotransporterRecName: Full=Uncharacterized outer membrane protein YpjA; Flags: Precursor; chromosome CDS2776802 4581 - 0.492032
yrbC predicted ABC-type organic solvent transporterRecName: Full=Probable phospholipid-binding protein MlaC; Flags: Precursor; chromosome CDS3337111 636 - 0.523585
yrbD predicted ABC-type organic solvent transporterRecName: Full=Probable phospholipid ABC transporter-binding protein MlaD; chromosome CDS3337765 552 - 0.498188
yrbE predicted toluene transporter subunitRecName: Full=Probable phospholipid ABC transporter permease protein MlaE; chromosome CDS3338321 783 - 0.551724
yrbF predicted toluene transporter subunitRecName: Full=Probable phospholipid import ATP-binding protein MlaF; EC=3.6.3.-; chromosome CDS3339111 810 - 0.545679
ysgA predicted hydrolaseRecName: Full=Putative carboxymethylenebutenolidase; EC=3.1.1.45; AltName: Full=Dienelactone hydrolase; Short=DLH; chromosome CDS3620512 816 + 0.545343