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2024-05-05 17:26:51

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 186

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Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPOA0160 TRAP dicarboxylate transporter, DctM subunitmegaplasmid CDS176064 1323 - 0.615268
NA SPOA0024 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, putativemegaplasmid CDS20444 801 - 0.657928
NA SPO2572 hypothetical proteinchromosome CDS2723893 696 - 0.587644
NA SPO0692 multicopper oxidasechromosome CDS721599 1386 + 0.671717
NA SPO2352 type I secretion target repeat proteinchromosome CDS2492612 1395 - 0.649462
NA SPO0250 histone deacetylase family proteinchromosome CDS270724 927 - 0.67206
NA SPOA0162 TRAP dicarboxylate family transporter, DctP subunitmegaplasmid CDS177943 1035 - 0.631884
NA SPOA0131 aromatic 1,2-dioxygenase, beta subunitmegaplasmid CDS141940 474 - 0.586498
NA SPO0490 calcium-binding domain proteinchromosome CDS493432 1002 + 0.59481
NA SPO0433 ABC transporter, permease proteinchromosome CDS448191 2517 - 0.692094
NA SPOA0282 long-chain-fatty-acid--CoA ligase, putativemegaplasmid CDS309822 1518 - 0.65415
NA SPO3378 benzoate transporterchromosome CDS3580575 1173 + 0.683717
NA SPO0372 autoinducer synthesis proteinchromosome CDS386685 639 + 0.607199
NA SPO1698 Asp/Glu/Hydantoin racemase family proteinchromosome CDS1809064 726 + 0.636364
NA SPO2042 methyltransferase, UbiE/COQ5 familychromosome CDS2172943 858 + 0.689977
NA SPO3036 metallo-beta-lactamase family proteinchromosome CDS3245171 2061 - 0.573508
NA SPO2650 methyltransferase, FkbM familychromosome CDS2804400 699 + 0.638054
NA SPO1390 thioredoxin domain protein, DsbA familychromosome CDS1457276 660 - 0.662121
NA SPO2220 conserved hypothetical proteinchromosome CDS2360983 651 - 0.623656
NA SPOA0264 TRAP transporter, DctQ familymegaplasmid CDS290411 534 - 0.559925
NA SPO2487 3-hydroxyacyl-CoA dehydrogenase, type IIchromosome CDS2637110 756 + 0.67328
NA SPO2571 TRAP transporter, DctM subunit, putativechromosome CDS2721521 2355 - 0.638217
NA SPO3671 muticopper oxidase domain proteinchromosome CDS3873719 1662 + 0.585439
NA SPOA0126 oxidoreductase, short chain dehydrogenase/reductase familymegaplasmid CDS136399 726 - 0.607438
NA SPO3021 phytanoyl-CoA dioxygenase family proteinchromosome CDS3223313 969 + 0.647059
NA SPO2450 Asp/Glu/Hydantoin racemase family proteinchromosome CDS2602907 753 + 0.706507
NA SPO3580 isochorismatase family proteinchromosome CDS3788719 645 + 0.64186
NA SPO1626 type I secretion target repeat proteinchromosome CDS1724415 3816 + 0.654088
NA SPO0620 conserved hypothetical proteinchromosome CDS638752 627 + 0.610845
NA SPO3441 conserved domain proteinchromosome CDS3643755 1527 + 0.62017
NA SPOA0265 TRAP transporter, DctP family, putativemegaplasmid CDS291001 1065 - 0.596244
NA SPO0434 ABC transporter, ATP-binding proteinchromosome CDS450704 696 - 0.681035
NA SPO2437 Asp/Glu/Hydantoin racemase family proteinchromosome CDS2590024 783 - 0.68327
NA SPO2401 type I secretion target repeat proteinchromosome CDS2548868 3270 - 0.547401
NA SPO3754 conserved hypothetical proteinchromosome CDS3964764 711 - 0.642757
NA SPO3739 hydantoinase/oxoprolinase family proteinchromosome CDS3950451 2004 + 0.677645
NA SPO3211 conserved hypothetical proteinchromosome CDS3420624 618 + 0.677994
NA SPOA0117 Asp/Glu/hydantoin racemase family proteinmegaplasmid CDS121973 777 + 0.6139
NA SPO0129 peptidase, T4 familychromosome CDS135951 1008 + 0.693452
NA SPO1931 acyl carrier protein, putativechromosome CDS2059087 258 + 0.565891
NA SPO2431 TRAP dicarboxylate transporter, DctM subunitchromosome CDS2581865 1629 - 0.614487
NA SPO1014 AMP-binding enzymechromosome CDS1063619 1509 + 0.671968
NA SPO1143 Asp/Glu/Hydantoin racemase family proteinchromosome CDS1199124 765 - 0.647059
NA SPO1447 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1518063 1296 - 0.708333
NA SPO1361 multicopper oxidase domain proteinchromosome CDS1426278 1377 + 0.697168
NA SPO2535 histone deacetylase/AcuC/AphA family proteinchromosome CDS2684729 1116 - 0.612007
NA SPO2573 bacterial extracellular solute-binding protein, family 7chromosome CDS2724935 1086 - 0.638122
NA SPOA0096 histone deacetylase/AcuC/AphA family proteinmegaplasmid CDS96657 1035 - 0.64058
NA SPO2433 TRAP dicarboxylate transporter, DctP subunit, putativechromosome CDS2584432 1173 - 0.599318
NA SPO2528 AMP-binding enzymechromosome CDS2676621 1716 - 0.614219
NA SPO2061 indigoidine synthase A family proteinchromosome CDS2193204 915 + 0.702732
NA SPO0362 type I secretion target repeat proteinchromosome CDS374164 2160 + 0.55787
NA SPO3638 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3840036 780 - 0.657692
NA SPO2409 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2560699 768 - 0.640625
NA SPO1966 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2096909 819 - 0.643468
NA SPO0795 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS829201 756 - 0.674603
NA SPOA0128 oxidoreductase, short chain dehydrogenase/reductase familymegaplasmid CDS137909 1239 - 0.650525
NA SPO2606 bacterial extracellular solute-binding protein, family 7chromosome CDS2760702 1035 + 0.628986
NA SPO3135 peptidase, T4 familychromosome CDS3342717 963 - 0.69055
NA SPO1450 aromatic 1,2-dioxygenase, beta subunitchromosome CDS1522101 477 - 0.597484
NA SPO3384 methyltransferase, FkbM familychromosome CDS3586953 657 + 0.637747
NA SPO3603 thioesterase family proteinchromosome CDS3809680 465 - 0.623656
NA SPO3549 conserved domain proteinchromosome CDS3759230 618 - 0.595469
NA SPO2586 type I secretion target repeat proteinchromosome CDS2738544 1992 + 0.656627
NA SPO1696 hydantoinase/oxoprolinase family proteinchromosome CDS1806320 1650 + 0.643636
NA SPO3574 conserved hypothetical proteinchromosome CDS3784425 600 - 0.661667
NA SPO2910 thioesterase family proteinchromosome CDS3110657 519 - 0.647399
NA SPO2020 methyltransferase, FkbM familychromosome CDS2147683 930 - 0.650538
NA SPO3654 7-alpha-hydroxysteroid dehydrogenase, putativechromosome CDS3856655 801 - 0.649189
NA SPO1480 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS1553536 726 - 0.640496
NA SPO2438 phytanoyl-CoA dioxygenase family proteinchromosome CDS2590809 888 - 0.647523
NA SPOA0155 type I secretion target repeat proteinmegaplasmid CDS167176 4437 - 0.620014
NA SPO2911 thioesterase family proteinchromosome CDS3111177 471 - 0.651805
NA SPO1471 isochorismatase family proteinchromosome CDS1544039 621 - 0.671498
NA SPO3051 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3264047 639 - 0.674491
NA SPO1688 thioesterase family proteinchromosome CDS1795261 444 + 0.657658
NA SPO3673 type I secretion target repeat proteinchromosome CDS3876050 6495 - 0.552117
NA SPO0385 2-hydroxychromene-2-carboxylate isomerase, putativechromosome CDS398793 594 - 0.66835
NA SPOA0116 fumarylacetoacetate hydrolase family proteinmegaplasmid CDS121054 918 + 0.637255
NA SPO1898 cytochrome P450 family proteinchromosome CDS2023334 1353 + 0.665928
NA SPO3369 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS3570837 813 + 0.661747
NA SPO1932 beta-ketoacyl synthase family proteinchromosome CDS2059353 1209 + 0.643507
NA SPO0764 cytochrome P450 family proteinchromosome CDS795780 1260 + 0.633333
NA SPO3195 histone deacetylase family proteinchromosome CDS3408049 1095 + 0.619178
NA SPO1695 hydantoin utilization protein, putativechromosome CDS1804224 2100 + 0.647619
NA SPO1639 fadB domain proteinchromosome CDS1742777 462 + 0.616883
NA SPO2415 phytanoyl-CoA dioxygenase family proteinchromosome CDS2566607 915 - 0.650273
NA SPO2610 conserved domain proteinchromosome CDS2765921 789 + 0.64512
NA SPO0072 conserved hypothetical proteinchromosome CDS73483 834 + 0.690647
NA SPO2070 DSBA-like thioredoxin family proteinchromosome CDS2202070 657 + 0.634703
NA SPO0677 AMP-binding proteinchromosome CDS706831 1629 + 0.637201
NA SPOA0130 AMP-binding enzyme family proteinmegaplasmid CDS140319 1620 - 0.609259
NA SPO3664 conserved hypothetical proteinchromosome CDS3866172 534 - 0.627341
NA SPO1622 cytochrome P450 family proteinchromosome CDS1718611 1293 + 0.668213
NA SPO2287 autoinducer synthesis proteinchromosome CDS2424015 861 + 0.600465
NA SPO0849 non-ribosomal peptide synthasechromosome CDS891472 6426 - 0.681917
NA SPO2891 conserved hypothetical proteinchromosome CDS3091377 819 - 0.710623
NA SPO2605 TRAP dicarboxylate transporter, DctM subunitchromosome CDS2759322 1326 + 0.61991
NA SPO1015 3-hydroxybutyrate dehydrogenase, putativechromosome CDS1065124 804 + 0.687811
NA SPO1494 2-hydroxychromene-2-carboxylate isomerase, putativechromosome CDS1567665 1365 + 0.677656
NA SPO2679 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS2833090 645 + 0.691473
NA SPOA0406 D-beta-hydroxybutyrate dehydrogenase, putativemegaplasmid CDS451660 759 - 0.675889
NA SPO2427 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2577596 723 - 0.669433
NA SPOA0333 TRAP dicarboxylate transporter, DctM subunitmegaplasmid CDS374238 1266 - 0.57504
NA SPO1473 hydantoin utilization protein B, putativechromosome CDS1546719 1695 - 0.665487
NA SPO0778 long-chain-fatty-acid--CoA ligase, putativechromosome CDS810706 1491 + 0.672032
NA SPO3839 type I secretion target repeat proteinchromosome CDS4054352 1077 + 0.624884
NA SPO3491 methyltransferase, UbiE/COQ5 familychromosome CDS3696505 633 + 0.64455
NA SPO1130 thioesterase family proteinchromosome CDS1184936 408 - 0.688725
NA SPO1725 conserved hypothetical proteinchromosome CDS1845036 744 - 0.616935
NA SPOA0360 multicopper oxidase, putativemegaplasmid CDS402425 1431 + 0.671558
NA SPO2413 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2564548 753 + 0.673307
NA SPOA0025 fumarylacetoacetate hydrolase family proteinmegaplasmid CDS21241 852 - 0.653756
NA SPO1445 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS1516571 723 - 0.661134
NA SPO3017 thioesterase family proteinchromosome CDS3217480 486 + 0.639918
NA SPO1957 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2087518 771 + 0.629053
NA SPO0846 phosphopantetheinyl transferase PptA, putativechromosome CDS885191 672 - 0.712798
NA SPO3691 fumarylacetoacetate hydrolase family proteinchromosome CDS3900396 699 + 0.65236
NA SPO3572 isochorismatase family proteinchromosome CDS3783221 546 + 0.666667
NA SPO2069 benzoate-coenzyme A ligase, putativechromosome CDS2200556 1518 + 0.698287
NA SPO3167 conserved hypothetical proteinchromosome CDS3374090 753 - 0.669323
NA SPO0128 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS135168 756 + 0.634921
NA SPO3132 conserved hypothetical proteinchromosome CDS3340978 624 - 0.701923
NA SPO1617 type I secretion target repeat proteinchromosome CDS1713363 3012 + 0.629814
NA SPO3380 gamma-butyrobetaine hydroxylase, putativechromosome CDS3582708 1137 + 0.655233
NA SPOA0334 TRAP dicarboxylate family transporter, DctQ subunitmegaplasmid CDS375570 561 - 0.55615
NA SPO2692 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2844179 780 - 0.689744
NA SPO0724 oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS751738 828 - 0.657005
NA SPO2604 conserved hypothetical proteinchromosome CDS2758784 537 + 0.60149
NA SPO2245 conserved domain proteinchromosome CDS2389149 1224 + 0.537582
NA SPO2828 type I secretion target repeat proteinchromosome CDS3022301 2079 + 0.648389
NA SPO2690 conserved hypothetical proteinchromosome CDS2841855 1056 - 0.641098
NA SPO3440 20-beta-hydroxysteroid dehydrogenase, putativechromosome CDS3642871 753 - 0.667995
NA SPO0776 conserved hypothetical protein TIGR00369chromosome CDS809491 426 + 0.664319
NA SPO1007 conserved hypothetical proteinchromosome CDS1058374 456 + 0.664474
NA SPO2539 AMP-binding enzymechromosome CDS2688666 1548 - 0.631783
NA SPO2002 acetylpolyamine aminohydrolasechromosome CDS2130936 1026 - 0.665692
NA SPO1600 fumarylacetoacetate hydrolase family proteinchromosome CDS1695747 846 - 0.671395
NA SPO1965 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS2095969 930 - 0.667742
NA SPO0527 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS522955 768 + 0.661458
NA SPO1463 TRAP dicarboxylate transporter, DctM subunitchromosome CDS1535349 1338 - 0.636771
NA SPO2672 ABC transporter, ATP-binding proteinchromosome CDS2826802 750 + 0.648
NA SPO0226 cytochrome P450 family proteinchromosome CDS244548 1239 + 0.657789
NA SPO1828 isochorismatase family proteinchromosome CDS1947185 642 + 0.629283
NA SPO2341 methyltransferase, FkbM familychromosome CDS2481555 753 + 0.664011
NA SPO3003 AMP-binding enzymechromosome CDS3202319 1926 - 0.629803
NA SPO2432 TRAP dicarboxylate transporter, DctQ subunitchromosome CDS2583495 609 - 0.582923
NA SPOA0449 phytanoyl-CoA dioxygenase family proteinmegaplasmid CDS1 798 + 0.662907
NA SPOA0263 TRAP transporter, DctM subunitmegaplasmid CDS289097 1311 - 0.592677
NA SPO1356 methyltransferase, FkbM familychromosome CDS1417947 687 + 0.624454
NA SPO2842 oxidoreductase, short chain dehydrogenase/reductase familychromosome CDS3041580 741 + 0.697706
NA SPO0586 acyl-carrier domain proteinchromosome CDS601912 1038 + 0.682081
NA SPO1449 AMP-binding proteinchromosome CDS1520491 1650 - 0.679394
NA SPO2671 membrane proteinchromosome CDS2826023 783 + 0.664112
NA SPO2435 fumarylacetoacetate hydrolase family proteinchromosome CDS2586391 846 + 0.646572
NA SPO3726 toluene tolerance family proteinchromosome CDS3938846 609 - 0.622332
acoR SPO3788 acetoin catabolism regulatory proteinchromosome CDS4001094 1734 - 0.593426
acpP SPO2274 acyl carrier proteinchromosome CDS2413533 234 - 0.58547
acuC SPO2177 acetoin utilization protein AcuCchromosome CDS2312693 1107 + 0.71364
alkK SPO2045 medium-chain-fatty-acid--CoA ligasechromosome CDS2174589 1620 - 0.641975
bdh-1 SPO2065 D-beta-hydroxybutyrate dehydrogenasechromosome CDS2196494 774 - 0.648579
bdh-2 SPO2823 D-beta-hydroxybutyrate dehydrogenasechromosome CDS3016510 753 + 0.665339
copA SPOA0370 copper resistance protein Amegaplasmid CDS413692 1944 - 0.626543
fabB SPOA0440 3-oxoacyl-(acyl-carrier-protein) synthasemegaplasmid CDS486694 1230 - 0.646341
fabF SPO2271 3-oxoacyl-(acyl carrier protein) synthase IIchromosome CDS2410614 1266 - 0.64613
fabG SPO2275 3-oxoacyl-(acyl-carrier-protein) reductasechromosome CDS2413979 738 - 0.642276
fadD SPO0801 4-coumarate:CoA ligasechromosome CDS835353 1608 - 0.652985
fcs SPO3696 feruloyl-CoA synthetasechromosome CDS3905730 1707 + 0.659051
gno SPO0595 gluconate 5-dehydrogenasechromosome CDS614292 762 + 0.688976
gtdA-1 SPO3690 gentisate 1,2-dioxygenasechromosome CDS3899365 1035 + 0.658937
gtdA-2 SPOA0115 gentisate 1,2-dioxygenasemegaplasmid CDS119912 1125 + 0.631111
hmgA SPO0686 homogentisate 1,2-dioxygenasechromosome CDS715657 1356 - 0.621681
hmgB SPO0685 fumarylacetoacetasechromosome CDS714330 1254 - 0.647528
hutI SPO2191 imidazolonepropionasechromosome CDS2327900 1308 + 0.657492
hyuA SPO1472 hydantoin utilization protein Achromosome CDS1544656 2067 - 0.671988
idnO SPO2417 gluconate 5-dehydrogenasechromosome CDS2568543 762 - 0.654856
linC-1 SPO1437 2,5-dichloro-2,5-cyclohexadiene-1,4-dioldehydrog enasechromosome CDS1509633 762 + 0.671916
linC-2 SPO3609 2,5-dichloro-2,5-cyclohexadiene-1,4-dioldehydrog enasechromosome CDS3815439 783 - 0.62963
nahD SPO3158 2-hydroxychromene-2-carboxylate isomerasechromosome CDS3365582 603 - 0.648425
paaD SPO0741 phenylacetic acid degradation protein PaaDchromosome CDS771657 429 + 0.636364
paaH SPO0756 phenylacetic acid degradation protein PaaHchromosome CDS789653 285 - 0.607018
pcaG SPOA0043 protocatechuate 3,4-dioxygenase alpha subunitmegaplasmid CDS38404 621 - 0.661836
pcaH SPOA0044 protocatechuate 3,4-dioxygenase beta subunitmegaplasmid CDS39088 729 - 0.62963
phbB SPO0325 acetoacetyl-CoA reductasechromosome CDS335827 723 - 0.637621
pmtA SPOA0294 phosphatidylethanolamine N-methyltransferasemegaplasmid CDS323640 621 + 0.565217
pncA SPO0093 pyrazinamidase/nicotinamidasechromosome CDS92595 591 + 0.664975