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2024-05-06 14:31:42

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Rhodopseudomonas palustris CGA009, CGA009

Number of genes found: 189

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Rhodopseudomonas palustris CGA009, CGA009
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RPA4595 conserved unknown proteinchromosome CDS5181226 1380 + 0.668841
NA RPA2665 possible acid-CoA ligasechromosome CDS3038042 1536 - 0.686198
NA RPA1368 conserved hypothetical proteinchromosome CDS1513015 591 + 0.646362
NA RPA0401 NAD binding site:Amine oxidasechromosome CDS440595 2136 - 0.682584
NA RPA0586 putative PAN2 protein ; short shain alcohol dehydrogenasechromosome CDS652210 894 - 0.659955
NA RPA2390 possible Rhizobactin siderophore biosynthesis protein rhbCchromosome CDS2709270 1782 - 0.62963
NA RPA0532 beta-ketothiolase, acetoacetyl-CoA reductasechromosome CDS592255 726 + 0.600551
NA RPA4425 2-hydroxyhepta-2,4-diene-1,7-dioate isomerasechromosome CDS4985030 843 + 0.644128
NA RPA2160 short chain dehydrogenasechromosome CDS2431465 750 - 0.656
NA RPA1775 putative dehydrogenasechromosome CDS1989978 915 - 0.660109
NA RPA3465 putative long-chain-fatty-acid CoA ligasechromosome CDS3908870 1527 - 0.666012
NA RPA1009 possible cytochrome P450chromosome CDS1110510 1188 + 0.661616
NA RPA3631 putative glucose dehydrogenasechromosome CDS4092518 774 - 0.68863
NA RPA4564 Phenylacetic acid degradation-related protein:Thioesterase superfamilychromosome CDS5143612 915 + 0.66776
NA RPA1853 putative short-chain dehydrogenasechromosome CDS2083126 741 - 0.677463
NA RPA2780 possible AMP-binding enzymechromosome CDS3151757 1650 - 0.643636
NA RPA1003 putative acyl-CoA synthasechromosome CDS1105201 1635 - 0.663609
NA RPA2038 putative oxidoreductasechromosome CDS2294633 855 + 0.661988
NA RPA3210 possible prolyl oligopeptidase family Dienelactone hydrolase familychromosome CDS3625694 969 - 0.666667
NA RPA1613 putative cytochrome P-450chromosome CDS1793582 1266 - 0.650079
NA RPA0459 possible fatty acid-CoA ligaseschromosome CDS505524 492 - 0.658537
NA RPA4237 ATP-binding component of ABC transporterchromosome CDS4778728 780 - 0.65
NA RPA2389 possible Rhizobactin siderophore biosynthesis protein RhsFchromosome CDS2707553 1689 - 0.645352
NA RPA3778 putative cytochrome p450-like enzymechromosome CDS4274767 1221 + 0.6724
NA RPA0458 possible fatty acid-CoA ligases.chromosome CDS504322 1554 - 0.643501
NA RPA1702 putative acyl-CoA ligasechromosome CDS1899531 1557 - 0.653821
NA RPA2344 conserved unknown proteinchromosome CDS2656394 621 - 0.713366
NA RPA0421 possible cytochrome P450 hydroxylase superfamily proteinschromosome CDS462674 1386 - 0.690476
NA RPA1757 possible oxoacyl carrier protein reductasechromosome CDS1967224 780 - 0.648718
NA RPA1207 PAS domain:sigma-54-dependent transcriptional regulator, Fis familychromosome CDS1318680 1890 + 0.695767
NA RPA1766 putative long-chain-fatty-acid-CoA ligasechromosome CDS1977106 1545 + 0.643366
NA RPA2183 DSBA oxidoreductasechromosome CDS2457284 621 + 0.605475
NA RPA0109 putative 3-oxoacyl-(acyl carrier ptn) reductasechromosome CDS125400 789 - 0.661597
NA RPA0865 homospermidine synthasechromosome CDS961340 1431 - 0.635919
NA RPA3340 peptide synthetase (fragment)chromosome CDS3774836 1914 - 0.620167
NA RPA0784 putative short-chain alcohol dehydrogenase-like proteinchromosome CDS869122 843 + 0.667853
NA RPA1297 Short-chain dehydrogenase/reductase SDR:Glucose/ribitol dehydrogenasechromosome CDS1416913 852 - 0.692488
NA RPA2388 possible acyl-CoA ligase for activation during siderophore synthesischromosome CDS2706288 1269 - 0.650118
NA RPA3963 putative permease of ABC transporterchromosome CDS4480407 1152 - 0.662326
NA RPA3338 possible Condensation domain, peptide synthetasechromosome CDS3764459 2310 - 0.628571
NA RPA1593 Thioesterase superfamilychromosome CDS1771122 489 - 0.660532
NA RPA1977 possible TrapT family, dctQ subunit, glutamate transportchromosome CDS2227645 597 - 0.589615
NA RPA0743 putative acid-CoA ligasechromosome CDS819739 1527 + 0.660118
NA RPA0896 putative 3-oxoacyl-acyl carrier protein reductasechromosome CDS997944 735 + 0.657143
NA RPA2964 Multicopper oxidase, type 1chromosome CDS3357277 1206 + 0.694859
NA RPA1194 putative carboxymethylenebutenolidasechromosome CDS1305267 675 + 0.647407
NA RPA1764 putative 2, 4-dienoyl-CoA reductase (NADPH)chromosome CDS1975165 873 - 0.656357
NA RPA0565 putative polyhydroxybutyrate depolymerasechromosome CDS627895 1188 + 0.653199
NA RPA1412 putative fatty-acid--CoA ligasechromosome CDS1562558 1560 + 0.641667
NA RPA3032 Phenylacetic acid degradation-related proteinchromosome CDS3432381 399 - 0.649123
NA RPA1138 Amine oxidasechromosome CDS1244827 1506 - 0.690571
NA RPA1732 possible cytochrome P450chromosome CDS1937353 1200 - 0.630833
NA RPA3928 unknown proteinchromosome CDS4432129 963 - 0.66459
NA RPA3970 putativephosphatidylethanolamine-N-methyltransferasechromosome CDS4488351 657 - 0.65449
NA RPA3813 Peptidase family T4chromosome CDS4309894 1050 + 0.690476
NA RPA1011 DSBA oxidoreductasechromosome CDS1113940 654 + 0.643731
NA RPA4421 putative 4-coumarate:CoA ligase 2chromosome CDS4980789 1551 - 0.646035
NA RPA2022 specialized acyl carrier proteinchromosome CDS2277156 282 - 0.588652
NA RPA3299 putative long-chain-fatty-acid CoA ligasechromosome CDS3720964 1557 - 0.671162
NA RPA2072 possible 3-oxoacyl-acyl carrier protein reductasechromosome CDS2332505 147 - 0.673469
NA RPA2172 putative oxidoreductasechromosome CDS2446500 759 - 0.6917
NA RPA0785 possible cytochrome P450 family proteinschromosome CDS870091 1380 - 0.662319
NA RPA3513 phytoene dehydrogenase-related proteinchromosome CDS3966889 1773 + 0.684151
NA RPA1763 putative long-chain-fatty-acid CoA ligasechromosome CDS1973251 1578 - 0.650824
NA RPA1942 putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerasechromosome CDS2185188 786 - 0.629771
NA RPA3552 putative short-chain dehydrogenase/reductasechromosome CDS4020574 819 + 0.716728
NA RPA2766 Phenylacetic acid degradation-related protein:Thioesterase superfamilychromosome CDS3138437 429 + 0.629371
NA RPA1110 putative 3-oxoacyl-acyl carrier protein reductasechromosome CDS1213766 789 - 0.674271
NA RPA3443 possible isomerase/decarboxylasechromosome CDS3884651 990 - 0.643434
NA RPA3551 putative oxidoreductase, short-chain dehydrogenase/reductase familychromosome CDS4019858 720 + 0.705556
NA RPA3224 putative short-chain dehydrogenasechromosome CDS3643705 795 - 0.650314
NA RPA3377 3-oxoacyl-acyl carrier protein reductasechromosome CDS3819486 705 - 0.692199
NA RPA0196 putative ABC transporter, ATP-binding proteinchromosome CDS218627 744 + 0.700269
NA RPA4236 Mce4/Rv3499c/MTV023.06c proteinchromosome CDS4777519 1197 - 0.656642
NA RPA3992 Fumarylacetoacetate (FAA) hydrolasechromosome CDS4515148 702 + 0.675214
NA RPA0954 possible histone deacetylase or acetylpolyamine aminohydrolase or acetoin utilization proteinchromosome CDS1054877 930 - 0.654839
NA RPA3868 putatively similar to frnE proteinchromosome CDS4368610 666 - 0.638138
NA RPA1010 Beta-lactamase-like:ATP/GTP-binding site motif A (P-loop)chromosome CDS1111734 1947 - 0.655367
NA RPA2303 putative 3-hydroxyacyl-CoA dehydrogenasechromosome CDS2610729 768 + 0.671875
NA RPA4599 conserved hypothetical proteinchromosome CDS5186123 273 + 0.630037
NA RPA1871 putative cytochrome P450chromosome CDS2099919 1239 + 0.669895
NA RPA3762 putative 2-oxo-3-ene-1,7-dioic acid hydratasechromosome CDS4257949 873 + 0.660939
NA RPA1975 periplasmic mannitol-binding protein, SmoM; possible Trap-T transport system, dctP subunitchromosome CDS2224485 1092 + 0.629121
NA RPA3918 conserved hypothetical proteinchromosome CDS4422103 807 - 0.633209
NA RPA3865 Thioesterase superfamilychromosome CDS4365165 549 + 0.679417
NA RPA2149 putative hydroxyquinol 1,2-dioxygenasechromosome CDS2418328 993 + 0.652568
NA RPA4287 conserved hypothetical proteinchromosome CDS4835541 633 - 0.657188
NA RPA4521 Thioesterase superfamilychromosome CDS5102565 378 + 0.685185
NA RPA2640 Isochorismatase hydrolase familychromosome CDS3003809 723 - 0.651452
NA RPA3092 putative oxidoreductasechromosome CDS3498265 744 + 0.674731
NA RPA0464 putative long-chain fatty-acid-CoA ligasechromosome CDS511411 1626 + 0.662977
NA RPA3961 putative periplasmic binding protein for ABC transporterchromosome CDS4478600 894 - 0.666667
NA RPA4267 long-chain-fatty-acid-CoA-ligasechromosome CDS4814933 1692 + 0.638298
NA RPA0398 putative 2, 4-dienoyl-CoA reductase (NADPH) precursorchromosome CDS437159 837 - 0.685783
NA RPA0021 possible short chain dehydrogenasechromosome CDS23779 738 - 0.651762
NA RPA1586 putative short-chain dehydrogenase/reductasechromosome CDS1765532 801 + 0.662921
NA RPA3562 UbiE/COQ5 methyltransferasechromosome CDS4027158 852 + 0.692488
NA RPA3191 putative short-chain dehydrogenaseschromosome CDS3603496 879 - 0.664391
NA RPA3452 Phenylacetic acid degradation-related proteinchromosome CDS3894626 576 - 0.696181
NA RPA1449 putative long-chain fatty acid--CoA ligasechromosome CDS1606418 1716 + 0.643939
NA RPA0024 Short-chain dehydrogenase/reductase SDRchromosome CDS26235 876 - 0.649543
NA RPA0186 putative short-chain dehydrogenase/reductasechromosome CDS206908 747 - 0.662651
NA RPA0320 autoinducer (acylhomoserine lactone) synthasechromosome CDS348608 657 - 0.652968
NA RPA0895 putative 3-oxoacyl-[ACP] reductasechromosome CDS997027 777 - 0.674389
NA RPA0441 conserved hypothetical proteinchromosome CDS487808 849 + 0.630153
NA RPA4443 acyl-CoA synthetasechromosome CDS5016593 1629 + 0.641498
NA RPA2019 3-oxoacyl-acyl carrier protein synthase IIchromosome CDS2274168 1281 - 0.669789
NA RPA4592 putative fatty acid metabolism AMP-binding proteinchromosome CDS5177281 1824 + 0.657895
NA RPA1737 possible dehydrogenasechromosome CDS1943207 780 - 0.682051
NA RPA2788 possible methyltransferasechromosome CDS3161963 747 - 0.651941
NA RPA2186 possible 3-oxo-(acyl) acyl carrier protein reductasechromosome CDS2459456 918 + 0.671024
NA RPA1615 putative methyltransferasechromosome CDS1796463 795 + 0.656604
NA RPA1307 putativephosphatidylethanolamine-N-methyltransferasechromosome CDS1427120 639 + 0.657277
NA RPA2146 putative long-chain-fatty-acid--CoA ligasechromosome CDS2413733 1539 + 0.663418
NA RPA1683 3-oxoacyl-acyl carrier protein reductasechromosome CDS1874213 783 - 0.688378
NA RPA2748 possible short-chain dehydrogenasechromosome CDS3118557 969 + 0.670795
NA RPA3287 putative 3-oxoacyl-acyl carrier protein reductasechromosome CDS3706645 786 + 0.670483
NA RPA4823 putative long-chain-fatty-acid-CoA ligasechromosome CDS5446767 1551 + 0.639587
NA RPA0595 conserved hypothetical proteinchromosome CDS664109 825 - 0.705455
NA RPA4051 possible oxo-acyl acyl carrier protein dehydrogenasechromosome CDS4582978 717 + 0.566248
NA RPA4436 conserved hypothetical proteinchromosome CDS5007582 696 - 0.639368
NA RPA3487 conserved hypothetical proteinchromosome CDS3937437 615 - 0.713821
NA RPA3924 conserved hypothetical proteinchromosome CDS4428556 660 - 0.613636
NA RPA1208 putative dioxygenasechromosome CDS1320610 1404 - 0.663105
NA RPA0197 possible ABC transporter permeaseschromosome CDS219374 2571 + 0.690004
NA RPA1780 Phenylacetic acid degradation-related proteinchromosome CDS1995247 591 - 0.656514
NA RPA2142 putative fatty-acid--CoA ligasechromosome CDS2407213 1605 + 0.648598
NA RPA1705 possible 3-hydroxyacyl-CoA dehydrogenase type IIchromosome CDS1903489 1077 + 0.649954
NA RPA2402 hypothetical proteinchromosome CDS2726837 354 + 0.587571
NA RPA2020 3-oxoacyl-acyl carrier protein synthasechromosome CDS2275459 1209 - 0.679074
NA RPA1684 putative 3-ketoacyl-acyl carrier protein reductasechromosome CDS1875104 762 + 0.660105
NA RPA2417 putative 3-ketoacyl-CoA reductasechromosome CDS2742298 762 + 0.664042
NA RPA0022 DSBA oxidoreductasechromosome CDS24637 603 - 0.621891
NA RPA2100 possible hydrolasechromosome CDS2359573 651 + 0.614439
NA RPA3259 conserved hypothetical proteinchromosome CDS3667935 534 - 0.610487
NA RPA3962 ATP-binding component of ABC transporterchromosome CDS4479631 774 - 0.643411
NA RPA4341 Beta-lactamase-likechromosome CDS4891911 1986 - 0.653072
NA RPA2714 putative long-chain-fatty-acid--CoA ligasechromosome CDS3086173 1566 + 0.667305
NA RPA4238 putative permease of ABC transporterchromosome CDS4779510 1137 - 0.627968
NA RPA2073 putative oxidoreductasechromosome CDS2332713 651 - 0.634409
NA RPA0763 possible methyltransferaseschromosome CDS845640 795 + 0.689308
NA RPA4802 conserved unknown proteinchromosome CDS5421680 732 - 0.70082
NA RPA3285 putative dehydrogenasechromosome CDS3704783 768 - 0.641927
NA RPA0848 conserved unknown proteinchromosome CDS940266 624 + 0.655449
NA RPA4206 D-beta-hydroxybutyrate dehydrogenasechromosome CDS4749468 789 - 0.648923
NA RPA4506 putative short-chain alcohol dehydrogenasechromosome CDS5084870 804 - 0.656716
NA RPA0609 conserved hypothetical proteinchromosome CDS677617 780 - 0.68718
NA RPA2824 Thioesterase superfamilychromosome CDS3197599 408 + 0.651961
NA RPA2492 Conserved hypothetical proteinchromosome CDS2833129 612 + 0.660131
BenE RPA2798 probable Benzoate membrane transport proteinchromosome CDS3173005 1284 + 0.63162
PA5115 RPA0999 conserved hypothetical proteinchromosome CDS1102360 615 + 0.64065
acpP RPA3073 constitutive acyl carrier proteinchromosome CDS3478718 240 - 0.558333
aliA RPA0651 cyclohexanecarboxylate-CoA ligasechromosome CDS718652 1644 - 0.661801
badA RPA0661 benzoate-CoA ligasechromosome CDS729921 1575 + 0.663492
badH RPA0654 2-hydroxycyclohexanecarboxyl-CoA dehydrogenasechromosome CDS722381 768 - 0.682292
btaB RPA0726 putative BtaB protein, S-adenosylmethionine:diacylgycerolhomoserine-N- methyltransf erasechromosome CDS799104 738 - 0.665312
caiC RPA4829 putative crotonobetaine/carnitine-CoA ligasechromosome CDS5451971 1587 + 0.669817
clcD RPA4832 putative dienelactone hydrolasechromosome CDS5455410 672 + 0.659226
crtD RPA1518 methoxyneurosporene dehydrogenasechromosome CDS1685462 1560 - 0.680128
crtF RPA1520 hydroxyneurosporene methyltransferase CrtFchromosome CDS1688059 1122 + 0.681818
crtI RPA1512 phytoene dehydrogenase CrtIchromosome CDS1679157 1536 + 0.617839
fabB RPA0426 beta-ketoacyl-ACP synthase Ichromosome CDS467387 1227 + 0.649552
fabF RPA3072 3-oxoacyl-acyl carrier protein synthase IIchromosome CDS3477356 1266 - 0.654818
fabG1 RPA0479 possible 3-oxoacyl-acyl carrier protein reductasechromosome CDS529346 783 - 0.657727
fabG2 RPA3074 3-oxoacyl-acyl carrier protein reductase fabGchromosome CDS3479262 738 - 0.654472
fabG3 RPA3304 putative 3-oxoacyl-acyl carrier protein reductasechromosome CDS3725434 828 + 0.661836
fabG4 RPA3474 putative 3-oxoacyl-acyl carrier protein reductasechromosome CDS3920586 750 + 0.665333
fabG5 RPA4596 putative 3-oxoacyl-acyl carrier protein reductasechromosome CDS5182598 732 + 0.669399
fadD1 RPA1242 putative long-chain-fatty-acid CoA ligasechromosome CDS1359791 1512 - 0.660053
fadD2 RPA3657 putative long-chain fatty acid-CoA ligasechromosome CDS4129813 1563 + 0.665387
fahA RPA4670 fumarylacetoacetate hydrolasechromosome CDS5267227 1266 - 0.659558
fcs1 RPA1707 putative feruloyl-CoA synthetasechromosome CDS1905646 1875 + 0.653867
fcs2 RPA1787 putative feruloyl-CoA synthetasechromosome CDS2002181 1899 + 0.654555
fixR1 RPA1195 short-chain dehydrogenasechromosome CDS1306424 777 - 0.674389
fixR2 RPA4633 short-chain dehydrogenasechromosome CDS5214468 897 - 0.662207
fixU, nifT RPA4623 conserved hypothetical proteinchromosome CDS5207522 201 - 0.631841
fkbM RPA2948 possible methyltransferase, FkbM familychromosome CDS3333512 972 - 0.656379
hmgA RPA4672 homogentisate 1,2-dioxygenasechromosome CDS5269437 1347 - 0.647364
hpcG RPA3758 2-oxo-hepta-3-ene-1,7-dioate hydratasechromosome CDS4253885 807 + 0.653036
kduD RPA4657 putative 2-keto-3-deoxygluconate dehydrogenasechromosome CDS5243582 747 + 0.650602
matB RPA0221 malonyl CoA synthetasechromosome CDS246248 1512 - 0.652778
nirK1 RPA3306 nitrite reductase, major outer membrane copper-containing proteinchromosome CDS3727317 1107 + 0.604336
nirK2 RPA4145 dissimilatory nitrite reductasechromosome CDS4686505 1113 + 0.634322
paaB RPA3767 phenylacetic acid degradation protein paaBchromosome CDS4263153 288 - 0.666667
paaI RPA1724 putative phenylacetic acid degredation proteinchromosome CDS1923939 474 - 0.694093
pimA RPA3716 pimeloyl-CoA ligasechromosome CDS4196498 1659 - 0.652803
rhlG RPA4786 putative beta-ketoacyl reductasechromosome CDS5401842 807 + 0.670384
tcmP RPA1061 possible polyketide synthesis proteinchromosome CDS1171079 855 + 0.670175
ucpA RPA3473 putative oxidoreductasechromosome CDS3919768 735 + 0.681633