Gene list
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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Bordetella pertussis, Tohama I
Number of genes found: 119
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| Bordetella pertussis, Tohama I | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | BP0837 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 866955 | 435 | - | 0.724138 |
| NA | BP0925 | putative fumarylacetoacetate-family hydrolase | SubName: Full=Putative fumarylacetoacetate-family hydrolase; | chromosome | CDS | 962411 | 861 | - | 0.681765 |
| NA | BP2853 | probable short chain dehydrogenase | SubName: Full=Probable short chain dehydrogenase; | chromosome | CDS | 3029999 | 783 | - | 0.736909 |
| NA | BP3605 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3821575 | 765 | + | 0.67451 |
| NA | BP2583 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2734679 | 759 | - | 0.654809 |
| NA | BP0813 | probable short-chain dehydrogenase | SubName: Full=Probable short-chain dehydrogenase; | chromosome | CDS | 837399 | 825 | - | 0.695758 |
| NA | BP0599 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 605639 | 924 | - | 0.735931 |
| NA | BP1923 | probable short chain dehydrogenase | SubName: Full=Probable short chain dehydrogenase; | chromosome | CDS | 2025137 | 768 | + | 0.723958 |
| NA | BP0329 | putative coenzyme A ligase | SubName: Full=Putative coenzyme A ligase; | chromosome | CDS | 331861 | 1680 | - | 0.700595 |
| NA | BP3506 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3717941 | 648 | + | 0.692901 |
| NA | BP2112 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; Flags: Fragment; | chromosome | CDS | 2235354 | 789 | - | 0.736375 |
| NA | BP0624 | putative substrate-CoA ligase | SubName: Full=Putative substrate-CoA ligase; | chromosome | CDS | 631264 | 1494 | - | 0.687416 |
| NA | BP1704 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 1788296 | 624 | - | 0.616987 |
| NA | BP1132 | probable short-chain dehydrogenase | SubName: Full=Probable short-chain dehydrogenase; | chromosome | CDS | 1195664 | 723 | - | 0.709544 |
| NA | BP2393 | probable D-aminopeptidase | SubName: Full=Probable D-aminopeptidase; | chromosome | CDS | 2532211 | 1149 | - | 0.704961 |
| NA | BP0132 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 130505 | 648 | - | 0.700617 |
| NA | BP0908 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 945424 | 411 | - | 0.683698 |
| NA | BP3010 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 3200634 | 813 | - | 0.685117 |
| NA | BP0778 | putative acetyl-CoA synthetase | SubName: Full=Putative acetyl-CoA synthetase; | chromosome | CDS | 799705 | 1533 | - | 0.711024 |
| NA | BP1207 | N-acyl-D-glutamate deacylase | SubName: Full=N-acyl-D-glutamate deacylase; EC=3.5.1.82; | chromosome | CDS | 1270972 | 1443 | + | 0.723493 |
| NA | BP0960 | histone deacetylase family protein | SubName: Full=Histone deacetylase family protein; | chromosome | CDS | 998406 | 924 | + | 0.666667 |
| NA | BP3757 | putative ABC transporter, ATP-binding protein | SubName: Full=Putative ABC transporter, ATP-binding protein; | chromosome | CDS | 3970585 | 837 | + | 0.691756 |
| NA | BP3498 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3709116 | 702 | - | 0.606838 |
| NA | BP1256 | putative carboxymethylenebutenolidase | SubName: Full=Putative carboxymethylenebutenolidase; EC=3.1.1.45; | chromosome | CDS | 1322778 | 789 | + | 0.695817 |
| NA | BP0597 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 602375 | 1659 | + | 0.657022 |
| NA | BP2854 | probable short chain dehydrogenase | SubName: Full=Probable short chain dehydrogenase; | chromosome | CDS | 3030795 | 750 | - | 0.698667 |
| NA | BP0596 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 601743 | 630 | + | 0.636508 |
| NA | BP1671 | probable short chain dehydrogenase | SubName: Full=Probable short chain dehydrogenase; | chromosome | CDS | 1758077 | 690 | + | 0.708696 |
| NA | BP1222 | probable short-chain dehydrogenase | SubName: Full=Probable short-chain dehydrogenase; | chromosome | CDS | 1285209 | 717 | + | 0.670851 |
| NA | BP2865 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3043194 | 435 | + | 0.68046 |
| NA | BP0219 | probable short-chain dehydrogenase | SubName: Full=Probable short-chain dehydrogenase; | chromosome | CDS | 229282 | 726 | + | 0.701102 |
| NA | BP2770 | probable short-chain dehydrogenase | SubName: Full=Probable short-chain dehydrogenase; | chromosome | CDS | 2945886 | 759 | + | 0.683794 |
| NA | BP2532 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2683287 | 696 | - | 0.662356 |
| NA | BP2963 | putative exported solute binding protein | SubName: Full=Putative exported solute binding protein; | chromosome | CDS | 3150286 | 1098 | - | 0.649363 |
| NA | BP2949 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3137060 | 645 | + | 0.685271 |
| NA | BP3761 | putative exported protein | SubName: Full=Putative exported protein; | chromosome | CDS | 3973647 | 624 | + | 0.650641 |
| NA | BP1103 | probable short chain dehydrogenase | SubName: Full=Probable short chain dehydrogenase; | chromosome | CDS | 1152892 | 756 | - | 0.727513 |
| NA | BP1686 | probable short-chain dehydrogenase | SubName: Full=Probable short-chain dehydrogenase; | chromosome | CDS | 1771179 | 714 | + | 0.72409 |
| NA | BP3759 | mce related protein | SubName: Full=Mce related protein; | chromosome | CDS | 3972216 | 507 | + | 0.619329 |
| NA | BP3296 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3514979 | 906 | - | 0.704194 |
| NA | BP2092 | putative dioxygenase component | SubName: Full=Putative dioxygenase component; | chromosome | CDS | 2214763 | 528 | + | 0.632576 |
| NA | BP2971 | putative hydrolase | SubName: Full=Putative hydrolase; | chromosome | CDS | 3157307 | 693 | + | 0.704185 |
| NA | BP1163 | probable short-chain dehydrogenase | SubName: Full=Probable short-chain dehydrogenase; | chromosome | CDS | 1227984 | 780 | + | 0.738462 |
| NA | BP3063 | putative aminohydrolase | SubName: Full=Putative aminohydrolase; | chromosome | CDS | 3265191 | 1020 | + | 0.677451 |
| NA | BP2351 | putative inner membrane transport permease | SubName: Full=Putative inner membrane transport permease; | chromosome | CDS | 2489443 | 2544 | - | 0.731525 |
| NA | BP3856 | putative taurine catabolism dioxygenase | SubName: Full=Putative taurine catabolism dioxygenase; | chromosome | CDS | 4066206 | 924 | - | 0.662338 |
| NA | BP1448 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1522576 | 438 | + | 0.678082 |
| NA | BP3455 | putative taurine dioxygenase | SubName: Full=Putative taurine dioxygenase; | chromosome | CDS | 3664684 | 909 | - | 0.664466 |
| NA | BP0583 | probable ring hydroxylating beta subunit | SubName: Full=Probable ring hydroxylating beta subunit; | chromosome | CDS | 589662 | 516 | - | 0.647287 |
| NA | BP0099 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 96210 | 1131 | + | 0.687887 |
| NA | BP2870 | putative acid CoA ligase | SubName: Full=Putative acid CoA ligase; | chromosome | CDS | 3047535 | 1476 | + | 0.691057 |
| NA | BP2841 | putative short-chain dehydrogenase | SubName: Full=Putative short-chain dehydrogenase; | chromosome | CDS | 3017773 | 753 | + | 0.746348 |
| NA | BP1489 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 1566941 | 1668 | + | 0.648082 |
| NA | BP1670 | putative hydrolase | SubName: Full=Putative hydrolase; | chromosome | CDS | 1756905 | 951 | - | 0.695058 |
| NA | BP3469 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 3682582 | 1134 | - | 0.730159 |
| NA | BP0048 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 49392 | 615 | + | 0.676423 |
| NA | BP1886 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 1987910 | 501 | - | 0.664671 |
| NA | BP2094 | putative 3-oxoacyl-CoA or-ACP reductase | SubName: Full=Putative 3-oxoacyl-CoA or-ACP reductase; | chromosome | CDS | 2216113 | 723 | + | 0.738589 |
| NA | BP0466 | alcohol dehydrogenase | SubName: Full=Alcohol dehydrogenase; | chromosome | CDS | 476993 | 759 | + | 0.679842 |
| NA | BP3838 | ubiE/COQ5 methyltransferase family protein | SubName: Full=UbiE/COQ5 methyltransferase family protein; | chromosome | CDS | 4048263 | 774 | + | 0.709302 |
| NA | BP2158 | putative sigma-54-dependent transcriptional regulator | SubName: Full=Putative sigma-54-dependent transcriptional regulator; | chromosome | CDS | 2279199 | 1866 | + | 0.741158 |
| NA | BP0589 | putative exported protein | SubName: Full=Putative exported protein; | chromosome | CDS | 593563 | 1104 | + | 0.636775 |
| NA | BP3244 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 3462382 | 711 | - | 0.721519 |
| NA | BP2713 | putative hydrolase | SubName: Full=Putative hydrolase; | chromosome | CDS | 2879705 | 885 | + | 0.714124 |
| NA | BP1645 | probable short-chain dehydrogenase | SubName: Full=Probable short-chain dehydrogenase; | chromosome | CDS | 1732863 | 759 | + | 0.72332 |
| NA | BP2300 | putative acetylpolyamine aminohydrolase | SubName: Full=Putative acetylpolyamine aminohydrolase; | chromosome | CDS | 2423237 | 1035 | + | 0.698551 |
| NA | BP2661 | putative exported protein | SubName: Full=Putative exported protein; | chromosome | CDS | 2816657 | 1092 | - | 0.685897 |
| NA | BP1705 | putative exported protein | SubName: Full=Putative exported protein; | chromosome | CDS | 1789046 | 1125 | - | 0.632889 |
| NA | BP0100 | probable ATP-binding component of ABC transporter | SubName: Full=Probable ATP-binding component of ABC transporter; | chromosome | CDS | 97340 | 840 | + | 0.679762 |
| NA | BP0859 | short-chain dehydrogenase | SubName: Full=Short-chain dehydrogenase; | chromosome | CDS | 891226 | 777 | - | 0.697555 |
| NA | BP0772 | putative acetoacetyl-CoA reductase | SubName: Full=Putative acetoacetyl-CoA reductase; EC=1.1.1.36; | chromosome | CDS | 793122 | 753 | - | 0.717131 |
| NA | BP0532 | putative substrate-CoA ligase | SubName: Full=Putative substrate-CoA ligase; | chromosome | CDS | 540858 | 1554 | + | 0.675676 |
| NA | BP1703 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 1786398 | 1902 | - | 0.669821 |
| NA | BP0582 | putative isochorismatase | SubName: Full=Putative isochorismatase; | chromosome | CDS | 588974 | 618 | + | 0.699029 |
| NA | BP0930 | putative CoA ligase | SubName: Full=Putative CoA ligase; | chromosome | CDS | 967344 | 1659 | - | 0.673297 |
| NA | BP2991 | acyl carrier protein | SubName: Full=Acyl carrier protein; | chromosome | CDS | 3183474 | 240 | - | 0.608333 |
| NA | BP1581 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 1659774 | 771 | + | 0.687419 |
| NA | BP3758 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 3971418 | 786 | + | 0.684478 |
| NA | BP0229 | beta-D-hydroxybutyrate dehydrogenase | SubName: Full=Beta-D-hydroxybutyrate dehydrogenase; EC=1.1.1.30; | chromosome | CDS | 236528 | 798 | - | 0.730576 |
| NA | BP2454 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 2594948 | 783 | - | 0.687101 |
| NA | BP1668 | probable short-chain dehydrogenase | SubName: Full=Probable short-chain dehydrogenase; | chromosome | CDS | 1754908 | 774 | - | 0.69509 |
| NA | BP1958 | putative isochorismatase | SubName: Full=Putative isochorismatase; | chromosome | CDS | 2062551 | 618 | + | 0.699029 |
| NA | BP1488 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 1566309 | 630 | + | 0.633333 |
| NA | BP3246 | putative fatty acid CoA ligase | SubName: Full=Putative fatty acid CoA ligase; | chromosome | CDS | 3464174 | 1632 | + | 0.727328 |
| NA | BP3212 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3423811 | 771 | - | 0.712062 |
| NA | BP2936 | putative exported protein | SubName: Full=Putative exported protein; | chromosome | CDS | 3124551 | 1008 | - | 0.698413 |
| NA | BP2726 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 2892790 | 705 | - | 0.693617 |
| NA | BP3542 | putative short chain dehydrogenase | SubName: Full=Putative short chain dehydrogenase; | chromosome | CDS | 3754262 | 726 | - | 0.69146 |
| acpP | BP2440 | acyl carrier protein | RecName: Full=Acyl carrier protein; Short=ACP; | chromosome | CDS | 2582664 | 240 | - | 0.533333 |
| alcA | BP2456 | alcaligin biosynthesis enzyme | RecName: Full=Alcaligin biosynthesis enzyme; EC=1.-.-.-; | chromosome | CDS | 2597771 | 1386 | + | 0.574315 |
| alcC | BP2458 | alcaligin biosynthesis protein | SubName: Full=Alcaligin biosynthesis protein; | chromosome | CDS | 2599777 | 1857 | + | 0.585891 |
| catC2 | BP0223 | methylmuconolactone isomerase | RecName: Full=Muconolactone Delta-isomerase; Short=MIase; EC=5.3.3.4; | chromosome | CDS | 232426 | 276 | + | 0.655797 |
| copA | BP3315 | copper resitance protein | SubName: Full=Copper resitance protein; | chromosome | CDS | 3534919 | 1776 | + | 0.670045 |
| cyaA | BP0760 | bifunctional hemolysin-adenylate cyclase precursor | RecName: Full=Bifunctional hemolysin/adenylate cyclase; AltName: Full=AC-HLY; AltName: Full=ACT; AltName: Full=Cyclolysin; Contains: RecName: Full=Calmodulin-sensitive adenylate cyclase; EC=4.6.1.1; AltName: Full=ATP pyrophosphate-lyase; AltName: Full=Adenylyl cyclase; Contains: RecName: Full=Hemolysin; Flags: Precursor; | chromosome | CDS | 776228 | 5121 | + | 0.666081 |
| dltA | BP2987 | putative D-alanine-D-alanyl carrier protein ligase | SubName: Full=Putative D-alanine-D-alanyl carrier protein ligase; | chromosome | CDS | 3179590 | 1464 | - | 0.687158 |
| fabF | BP2439 | 3-oxoacyl-[acyl-carrier-protein] synthase II | RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase 2; EC=2.3.1.179; | chromosome | CDS | 2581245 | 1230 | - | 0.64065 |
| fabG | BP1785 | 3-oxoacyl-[acyl-carrier protein] reductase | SubName: Full=3-oxoacyl-[acyl-carrier protein] reductase; EC=1.1.1.100; | chromosome | CDS | 1875776 | 777 | + | 0.673102 |
| fabG | BP1672 | 3-oxoacyl-[acyl-carrier protein] reductase | SubName: Full=3-oxoacyl-[acyl-carrier protein] reductase; EC=1.1.1.100; | chromosome | CDS | 1758831 | 756 | + | 0.698413 |
| fabG | BP1128 | 3-oxoacyl-[acyl-carrier protein] reductase | SubName: Full=3-oxoacyl-[acyl-carrier protein] reductase; EC=1.1.1.100; | chromosome | CDS | 1191801 | 759 | - | 0.703557 |
| fabG | BP2554 | probable 3-oxoacyl-[acyl-carrier protein] reductase | SubName: Full=Probable 3-oxoacyl-[acyl-carrier protein] reductase; EC=1.1.1.100; | chromosome | CDS | 2708541 | 747 | - | 0.676037 |
| fabG | BP2441 | 3-oxoacyl-[acyl-carrier protein] reductase | SubName: Full=3-oxoacyl-[acyl-carrier protein] reductase; EC=1.1.1.100; | chromosome | CDS | 2583086 | 753 | - | 0.697211 |
| fadD | BP2811 | long-chain-fatty-acid--CoA ligase | SubName: Full=Long-chain-fatty-acid--CoA ligase; EC=6.2.1.3; | chromosome | CDS | 2985477 | 1692 | + | 0.670804 |
| fahA | BP3135 | fumarylacetoacetase | SubName: Full=Fumarylacetoacetase; EC=3.7.1.2; | chromosome | CDS | 3340405 | 1314 | + | 0.702435 |
| hmgA | BP3134 | homogentisate 1,2-dioxygenase | RecName: Full=Homogentisate 1,2-dioxygenase; Short=HGDO; EC=1.13.11.5; AltName: Full=Homogentisate oxygenase; AltName: Full=Homogentisic acid oxidase; AltName: Full=Homogentisicase; | chromosome | CDS | 3338998 | 1299 | + | 0.678214 |
| hyuA | BP0753 | putative hydantoin utilization protein A | SubName: Full=Putative hydantoin utilization protein A; | chromosome | CDS | 766089 | 2049 | + | 0.677892 |
| hyuA | BP0822 | hydantoin utilization protein A | SubName: Full=Hydantoin utilization protein A; | chromosome | CDS | 849327 | 2073 | - | 0.691269 |
| hyuB | BP0754 | hydantoin utilization protein B | SubName: Full=Hydantoin utilization protein B; | chromosome | CDS | 768155 | 1998 | + | 0.674174 |
| hyuB | BP0821 | hydantoin utilization protein B | SubName: Full=Hydantoin utilization protein B; | chromosome | CDS | 847318 | 2013 | - | 0.698957 |
| idnO | BP0464 | gluconate 5-dehydrogenase | SubName: Full=Gluconate 5-dehydrogenase; EC=1.1.1.69; | chromosome | CDS | 474679 | 780 | + | 0.714103 |
| maiA | BP1955 | maleate cis-trans isomerase | RecName: Full=Maleate isomerase; EC=5.2.1.1; AltName: Full=Maleate cis-trans isomerase; | chromosome | CDS | 2059885 | 753 | + | 0.674635 |
| maiA | BP0579 | maleate cis-trans isomerase | RecName: Full=Maleate isomerase; EC=5.2.1.1; AltName: Full=Maleate cis-trans isomerase; | chromosome | CDS | 586308 | 753 | + | 0.673307 |
| oplaH | BP1895 | 5-oxoprolinase | SubName: Full=5-oxoprolinase; EC=3.5.2.9; | chromosome | CDS | 1994906 | 3624 | + | 0.699227 |
| paaB | BP2683 | phenylacetic acid degradation protein | SubName: Full=Phenylacetic acid degradation protein; | chromosome | CDS | 2848230 | 285 | - | 0.621053 |
| paaI | BP2676 | phenylacetic acid degradation protein | SubName: Full=Phenylacetic acid degradation protein; | chromosome | CDS | 2841826 | 471 | - | 0.687898 |
| phbB | BP1150 | acetoacetyl-CoA reductase | SubName: Full=Acetoacetyl-CoA reductase; EC=1.1.1.36; | chromosome | CDS | 1216623 | 738 | + | 0.636856 |
| smoM | BP1487 | putative periplasmic solute-binding protein | SubName: Full=Putative periplasmic solute-binding protein; | chromosome | CDS | 1565003 | 1095 | + | 0.645662 |
| tfdA | BP1665 | alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase | SubName: Full=Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase; EC=1.14.-.-; | chromosome | CDS | 1751992 | 870 | + | 0.656322 |
| tpm | BP0873 | thiopurine S-methyltransferase | RecName: Full=Thiopurine S-methyltransferase; EC=2.1.1.67; AltName: Full=Thiopurine methyltransferase; | chromosome | CDS | 910426 | 660 | + | 0.683333 |
| wcbP | BP1655 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 1741924 | 774 | - | 0.724806 |
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