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2024-05-05 13:35:39

Gene list

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COG category: Secondary metabolites biosynthesis, transport and catabolism
Organism: Ralstonia solanacearum GMI1000, GMI1000

Number of genes found: 158

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Ralstonia solanacearum GMI1000, GMI1000
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
RSc0026 CONSERVED HYPOTHETICAL PROTEINchromosome CDS30445 648 - 0.682099
RSc0055 HYPOTHETICAL SIGNAL PEPTIDE PROTEINchromosome CDS60624 978 - 0.753579
RSc0064 PUTATIVE LONG-CHAIN-FATTY-ACID--COA LIGASE PROTEINchromosome CDS70887 1806 - 0.699889
RSc0102 PUTATIVE CALCIUM BINDING HEMOLYSIN PROTEINchromosome CDS114282 3654 - 0.640394
RSc0104 PUTATIVE HEMOLYSIN-TYPE CALCIUM-BINDING PROTEINchromosome CDS119027 2883 - 0.621575
RSc0156 PUTATIVE OXIDOREDUCTASE PROTEINchromosome CDS176457 804 + 0.711443
RSc0171 PUTATIVE LIPOPROTEIN OXIDOREDUCTASE OXIDOREDUCTASEchromosome CDS192394 741 - 0.673414
RSc0215 PUTATIVE OXIDOREDUCTASE PROTEINchromosome CDS237412 828 - 0.684783
RSc0242 PUTATIVE HYDROLASE PROTEINchromosome CDS266542 687 - 0.652111
RSc0246 PUTATIVE CALCIUM BINDING HEMOLYSIN PROTEINchromosome CDS271736 3471 - 0.640161
RSc0268 HYPOTHETICAL SIGNAL PEPTIDE PROTEINchromosome CDS301149 927 - 0.709817
RSc0273 PUTATIVE 2-HYDROXYCHROMENE-2-CARBOXYLATE ISOMERASE PROTEINchromosome CDS305290 606 - 0.676568
RSc0275 HYPOTHETICAL OXIDOREDUCTASE PROTEINchromosome CDS307080 711 - 0.724332
RSc0284 PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEINchromosome CDS316671 801 - 0.725343
RSc0297 HYPOTHETICAL PROTEINchromosome CDS330235 258 - 0.589147
RSc0301 CONSERVED HYPOTHETICAL PROTEINchromosome CDS333720 993 + 0.685801
RSc0313 PROBABLE TRANSMEMBRANE PROTEINchromosome CDS344284 1125 + 0.689778
RSc0314 PROBABLE ATP-BINDING ABC TRANSPORTER PROTEINchromosome CDS345405 897 + 0.694537
RSc0315 PROBABLE SIGNAL PEPTIDE PROTEINchromosome CDS346301 993 + 0.707956
RSc0383 CONSERVED HYPOTHETICAL PROTEINchromosome CDS411937 702 + 0.703704
RSc0427 PROBABLE 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE (BETA-KETOACYL-ACP SYNTHASE)chromosome CDS453907 1218 - 0.719212
RSc0434 HYPOTHETICAL PROTEINchromosome CDS463077 336 + 0.589286
RSc0435 PROBABLE 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE OXIDOREDUCTASEchromosome CDS463514 717 + 0.701534
RSc0442 PUTATIVE FATTY-ACID--COA LIGASE TRANSMEMBRANE PROTEINchromosome CDS468951 1716 + 0.68007
RSc0462 CONSERVED HYPOTHETICAL PROTEINchromosome CDS493457 630 + 0.733333
RSc0536 PROBABLE SHORT-CHAIN DEHYDROGENASE TRANSMEMBRANE PROTEINchromosome CDS576660 1413 - 0.739561
RSc0919 CONSERVED HYPOTHETICAL PROTEINchromosome CDS970704 924 + 0.669913
RSc1029 PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEINchromosome CDS1081177 741 - 0.74359
RSc1144 HYPOTHETICAL PROTEINchromosome CDS1200072 573 + 0.713787
RSc1383 PROBABLE D-AMINOPEPTIDASE PROTEINchromosome CDS1474954 1026 + 0.734893
RSc1497 CONSERVED HYPOTHETICAL PROTEINchromosome CDS1602901 726 + 0.68595
RSc1514 HYPOTHETICAL PROTEINchromosome CDS1615365 774 - 0.700258
RSc1568 PROBABLE OXIDOREDUCTASE PROTEINchromosome CDS1684614 906 + 0.653422
RSc1572 PROBABLE D-BETA-HYDROXYBUTYRATE DEHYDROGENASE (BDH) OXIDOREDUCTASE PROTEINchromosome CDS1687608 780 + 0.685897
RSc1606 CONSERVED HYPOTHETICAL PROTEINchromosome CDS1726314 972 + 0.677984
RSc1718 PROBABLE ATP-BINDING ABC TRANSPORTER PROTEINchromosome CDS1837268 711 + 0.677918
RSc1730 PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEINchromosome CDS1851224 771 + 0.69131
RSc1763 PROBABLE DEHYDROGENASE OXIDOREDUCTASE PROTEINchromosome CDS1890411 783 + 0.675607
RSc1764 CONSERVED HYPOTHETICAL PROTEINchromosome CDS1891226 435 + 0.685057
RSc1769 PROBABLE OXIDOREDUCTASE DEHYDROGENASE SIGNAL PEPTIDE PROTEINchromosome CDS1896181 903 + 0.678848
RSc1777 PUTATIVE LIPOPROTEIN TRANSMEMBRANEchromosome CDS1912903 828 + 0.655797
RSc1804 HYPOTHETICAL PROTEINchromosome CDS1941939 2499 - 0.737895
RSc1805 PUTATIVE SIDEROPHORE-LIKE SYNTHASE PROTEINchromosome CDS1944434 1164 - 0.730241
RSc1806 PROBABLE POLYKETIDE SYNTHASE PROTEINchromosome CDS1945814 12807 - 0.737331
RSc1810 PROBABLE POLYKETIDE SYNTHASE PROTEINchromosome CDS1964976 7143 - 0.735685
RSc1811 PUTATIVE SIDEROPHORE SYNTHETASE PROTEINchromosome CDS1972550 6021 + 0.729779
RSc1817 PUTATIVE SIDEROPHORE BIOSYNTHESIS OXIDOREDUCTASE PROTEINchromosome CDS1985883 1389 + 0.62203
RSc1822 PROBABLE MALEATE CIS-TRANS ISOMERASE PROTEINchromosome CDS1990746 759 - 0.675889
RSc1824 CONSERVED HYPOTHETICAL PROTEINchromosome CDS1992677 960 - 0.6875
RSc1825 PUTATIVE DIOXYGENASE OXIDOREDUCTASE PROTEINchromosome CDS1993688 1140 - 0.680702
RSc1834 PUTATIVE TRANSMEMBRANE PROTEINchromosome CDS2005547 1608 - 0.725124
RSc1838 PROBABLE OXIDOREDUCTASE PROTEINchromosome CDS2009846 789 - 0.707224
RSc2019 PROBABLE SIGNAL PEPTIDE PROTEINchromosome CDS2197582 501 + 0.728543
RSc2091 PROBABLE TRANSMEMBRANE PROTEINchromosome CDS2261495 2532 - 0.719589
RSc2149 HYPOTHETICAL PROTEINchromosome CDS2332231 1032 + 0.722868
RSc2186 PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEINchromosome CDS2368185 792 - 0.731061
RSc2228 PUTATIVE CARBOXYMETHYLENEBUTENOLIDASE (DIENELACTONE HYDROLASE) PROTEINchromosome CDS2416101 882 - 0.680272
RSc2297 HYPOTHETICAL SIGNAL PEPTIDE PROTEINchromosome CDS2489798 8229 - 0.660955
RSc2298 PUTATIVE SIGNAL PEPTIDE PROTEINchromosome CDS2498047 1599 - 0.668543
RSc2299 PROBABLE SIGNAL PEPTIDE PROTEINchromosome CDS2499656 1506 - 0.641434
RSc2346 PUTATIVE METHYLTRANSFERASE PROTEINchromosome CDS2544170 627 - 0.69059
RSc2504 PUTATIVE OXIDOREDUCTASE PROTEINchromosome CDS2710733 747 - 0.737617
RSc2534 PROBABLE 3-HYDROXYACYL-COA DEHYDROGENASE TYPE II OXIDOREDUCTASE PROTEINchromosome CDS2741423 759 + 0.714097
RSc2589 CONSERVED HYPOTHETICAL PROTEINchromosome CDS2795654 393 - 0.569975
RSc2590 HYPOTHETICAL PROTEINchromosome CDS2796232 387 - 0.583979
RSc2596 CONSERVED HYPOTHETICAL PROTEINchromosome CDS2800779 591 - 0.612521
RSc2597 PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEINchromosome CDS2801443 759 - 0.617918
RSc2753 PROBABLE OXIDOREDUCTASE PROTEINchromosome CDS2964743 798 - 0.713033
RSc2958 PROBABLE SIGNAL PEPTIDE PROTEINchromosome CDS3186526 636 - 0.632075
RSc2960 PROBABLE SIGNAL PEPTIDE PROTEINchromosome CDS3188129 522 - 0.645594
RSc2961 PROBABLE TRANSMEMBRANE PROTEINchromosome CDS3188679 768 - 0.666667
RSc2962 PROBABLE ATP-BINDING ABC TRANSPORTER PROTEINchromosome CDS3189443 840 - 0.694048
RSc3026 HYPOTHETICAL PROTEINchromosome CDS3247560 591 - 0.730964
RSc3129 PROBABLE TRANSCRIPTION REGULATOR PROTEINchromosome CDS3374673 1914 + 0.73093
RSc3138 PROBABLE OXIDOREDUCTASE PROTEINchromosome CDS3387988 789 - 0.69455
RSc3157 CONSERVED HYPOTHETICAL PROTEINchromosome CDS3411565 837 - 0.616487
RSc3209 PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEINchromosome CDS3471334 807 + 0.605948
RSc3256 CONSERVED HYPOTHETICAL PROTEINchromosome CDS3511444 813 - 0.693727
RSc3331 CONSERVED HYPOTHETICAL PROTEINchromosome CDS3593959 606 - 0.681518
RSc3389 HYPOTHETICAL PROTEINchromosome CDS3654061 549 - 0.723133
RSp0033 PROBABLE OXIDOREDUCTASE PROTEINmegaplasmid CDS39172 774 + 0.742894
RSp0174 PROBABLE METHYLTRANSFERASE PROTEINmegaplasmid CDS215041 825 + 0.654545
RSp0209 PROBABLE HYDROXYLASE PROTEINmegaplasmid CDS258493 792 + 0.704545
RSp0212 PROBABLE DIOXYGENASE SIGNAL PEPTIDE PROTEINmegaplasmid CDS260325 1563 + 0.715291
RSp0230 PUTATIVE 3-ALPHA-HYDROXYSTEROID DEHYDROGENASE/CARBONYL REDUCTASE OXIDOREDUCTASE PROTEINmegaplasmid CDS288021 768 + 0.709635
RSp0294 PUTATIVE HEMOLYSIN-TYPE CALCIUM-BINDING PROTEINmegaplasmid CDS382319 1770 + 0.562147
RSp0295 PUTATIVE HEMOLYSIN-TYPE PROTEINmegaplasmid CDS384501 2079 + 0.664743
RSp0305 PROBABLE DEHYDROGENASE OXIDOREDUCTASE PROTEINmegaplasmid CDS400310 768 - 0.730469
RSp0355 HYPOTHETICAL PROTEINmegaplasmid CDS461118 741 + 0.623482
RSp0361 PUTATIVE 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASEmegaplasmid CDS466064 1188 - 0.673401
RSp0369 PUTATIVE ACYL-CARRIER-PROTEINmegaplasmid CDS476311 246 - 0.597561
RSp0370 PUTATIVE ACYL-CARRIER-PROTEINmegaplasmid CDS476595 258 - 0.554264
RSp0419 PUTATIVE SIDEROPHORE BIOSYNTHESIS PROTEINmegaplasmid CDS531328 1890 + 0.74709
RSp0421 PROBABLE SIDEROPHORE BIOSYNTHESIS PROTEINmegaplasmid CDS534437 1836 + 0.713508
RSp0422 PROBABLE SIDEROPHORE BIOSYNTHESIS PROTEINmegaplasmid CDS536269 1770 + 0.712429
RSp0438 PUTATIVE HYDROLASE PROTEINmegaplasmid CDS550772 594 + 0.63468
RSp0446 PROBABLE OXIDOREDUCTASE PROTEINmegaplasmid CDS558779 909 - 0.684268
RSp0498 HYPOTHETICAL PROTEINmegaplasmid CDS621010 882 - 0.571429
RSp0589 PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEINmegaplasmid CDS723622 831 + 0.611312
RSp0638 PROBABLE COMPOSITE ATP-BINDING TRANSMEMBRANE ABC TRANSPORTER PROTEINmegaplasmid CDS777576 1668 - 0.688249
RSp0642 PROBABLE PEPTIDE SYNTHETASE PROTEINmegaplasmid CDS802916 17862 + 0.67792
RSp0661 CONSERVED HYPOTHETICAL PROTEINmegaplasmid CDS839795 639 - 0.597809
RSp0690 PROBABLE FUMARYLACETOACETASE (FUMARYLACETOACETATE HYDROLASE) PROTEINmegaplasmid CDS876710 1272 - 0.696541
RSp0697 PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEINmegaplasmid CDS885616 792 + 0.662879
RSp0709 PUTATIVE CYTOCHROME P-450-LIKE MONOOXYGENASE OXIDOREDUCTASE PROTEINmegaplasmid CDS898388 1197 + 0.647452
RSp0779 PROBABLE AUTOINDUCER SYNTHASE (ACYL HOMOSERINE LACTONE SYNTHASE) PROTEINmegaplasmid CDS979962 549 + 0.617486
RSp0783 HYPOTHETICAL PROTEINmegaplasmid CDS986363 270 + 0.651852
RSp0787 PUTATIVE TRANSMEMBRANE PROTEINmegaplasmid CDS989841 1680 + 0.697024
RSp0791 HYPOTHETICAL PROTEINmegaplasmid CDS996393 312 + 0.644231
RSp0891 PUTATIVE HYDRATASE PROTEINmegaplasmid CDS1128574 798 + 0.704261
RSp0892 PROBABLE 4-OXALOCROTONATE DECARBOXYLASE PROTEINmegaplasmid CDS1129368 792 + 0.712121
RSp0894 PROBABLE ACETALDEHYDE DEHYDROGENASE OXIDOREDUCTASE PROTEINmegaplasmid CDS1130346 921 + 0.700326
RSp0899 PROBABLE HYDRATASE PROTEINmegaplasmid CDS1135071 855 - 0.659649
RSp0909 CONSERVED HYPOTHETICAL PROTEINmegaplasmid CDS1147051 669 - 0.683109
RSp1059 PROBABLE DEHYDROGENASE/REDUCTASE OXIDOREDUCTASE PROTEINmegaplasmid CDS1341353 786 + 0.670483
RSp1123 PUTATIVE OXIDOREDUCTASE PROTEINmegaplasmid CDS1419992 921 + 0.700326
RSp1308 PUTATIVE TRANSMEMBRANE PROTEINmegaplasmid CDS1660557 717 - 0.695955
RSp1339 PUTATIVE TRANSMEMBRANE PROTEINmegaplasmid CDS1690747 717 - 0.695955
RSp1419 PUTATIVE PEPTIDE SYNTHASE PROTEINmegaplasmid CDS1783454 2814 - 0.594172
RSp1422 PUTATIVE PEPTIDE SYNTHETASE PROTEINmegaplasmid CDS1788933 4257 - 0.715997
RSp1433 HYPOTHETICAL PROTEINmegaplasmid CDS1802430 279 - 0.637993
RSp1434 CONSERVED HYPOTHETICAL PROTEINmegaplasmid CDS1802705 1656 - 0.693841
RSp1503 PROBABLE MAJOR ANAEROBICALLY INDUCED OUTER MEMBRANE TRANSMEMBRANE PROTEINmegaplasmid CDS1884433 1533 - 0.654925
RSp1530 PUTATIVE L-ASCORBATE OXIDASE (ASCORBASE) OXIDOREDUCTASE PROTEINmegaplasmid CDS1917246 2154 - 0.674095
RSp1659 PROBABLE ACYL-CARRIER-PROTEINmegaplasmid CDS2073766 264 + 0.643939
acpP PROBABLE ACYL CARRIER PROTEINchromosome CDS1106629 240 + 0.545833
adc PROBABLE ACETOACETATE DECARBOXYLASE PROTEINmegaplasmid CDS1340565 744 + 0.669355
alkK PROBABLE ACYL-COA SYNTHETASE PROTEINchromosome CDS1870828 1629 + 0.673419
bioC PUTATIVE BIOTIN SYNTHESIS PROTEIN (METHYLTRANSFERASE)chromosome CDS389941 1104 + 0.699275
copA PROBABLE COPPER RESISTANCE TRANSMEMBRANE PROTEINmegaplasmid CDS834396 1818 + 0.70407
fabB PROBABLE 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE Imegaplasmid CDS462366 1215 - 0.683951
fabF1 PROBABLE 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE IIchromosome CDS1106980 1233 + 0.648013
fabF2 PUTATIVE 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE IImegaplasmid CDS463634 1227 - 0.670742
fabG1 PROBABLE 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE OXIDOREDUCTASEchromosome CDS1105682 750 + 0.649333
fabG2 PROBABLE 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE OXIDOREDUCTASEmegaplasmid CDS464860 729 - 0.66941
fadD1 PROBABLE LONG-CHAIN-FATTY-ACID--COA LIGASE PROTEINchromosome CDS3075262 1710 - 0.665497
fadD2 PROBABLE LONG-CHAIN-FATTY-ACID--COA LIGASE PROTEINchromosome CDS824518 1707 + 0.682484
fcs PROBABLE FERULOYL-COA SYNTHETASE PROTEINmegaplasmid CDS282389 1875 + 0.717333
hmgA PROBABLE HOMOGENTISATE 1,2-DIOXYGENASE DIOXYGENASE OXIDOREDUCTASE PROTEINmegaplasmid CDS878028 1347 - 0.685226
hutI PROBABLE IMIDAZOLONE-5-PROPIONATE HYDROLASE TRANSMEMBRANE PROTEINchromosome CDS2844130 1227 - 0.731051
idnO PROBABLE GLUCONATE 5-DEHYDROGENASE OXIDOREDUCTASE PROTEINmegaplasmid CDS1192732 777 + 0.670528
nagH PUTATIVE SALICYLATE-5-HYDROXYLASE SMALL OXYGENASE COMPONENT OXIDOREDUCTASE PROTEINchromosome CDS1146412 474 - 0.616034
nagI PROBABLE GENTISATE 1,2-DIOXYGENASE OXIDOREDUCTASE PROTEINchromosome CDS1145035 1047 - 0.702961
nagK PUTATIVE ISOMERASE-DECARBOXYLASE HOMOLOG PROTEINchromosome CDS1144215 699 - 0.701001
ndeD PROBABLE N-ACYL-D-GLUTAMATE DEACYLASE PROTEINmegaplasmid CDS1508867 1485 + 0.726599
paaB PROBABLE PHENYLACETIC ACID DEGRADATION PROTEINmegaplasmid CDS738690 288 + 0.65625
paaI PROBABLE PHENYLACETIC ACID DEGRADATION PROTEINchromosome CDS3103277 468 + 0.700855
pcaG PROBABLE PROTOCATECHUATE 3,4-DIOXYGENASE (ALPHA CHAIN) OXIDOREDUCTASE PROTEINchromosome CDS1544934 651 + 0.675883
pcaH PROBABLE PROTOCATECHUATE 3,4-DIOXYGENASE (BETA CHAIN) OXIDOREDUCTASE PROTEINchromosome CDS1544149 741 + 0.651822
phbB PROBABLE ACETOACETYL-COA REDUCTASE OXIDOREDUCTASE PROTEINchromosome CDS1754514 741 + 0.639676
phcB REGULATORY PROTEINchromosome CDS2943414 1404 + 0.650285
pncA PROBABLE BIFUNCTIONAL PROTEIN: PYRAZINAMIDASE AND NICOTINAMIDASE HYDROLASE (NICOTINE DEAMIDASE)chromosome CDS1886495 633 + 0.704581
polS PUTATIVE SORBITOL DEHYDROGENASE (L-IDITOL 2-DEHYDROGENASE) OXIDOREDUCTASE PROTEINchromosome CDS2330228 771 - 0.658885
pvdA PROBABLE L-ORNITHINE 5-MONOOXYGENASE OXIDOREDUCTASE PROTEINmegaplasmid CDS1795896 1338 - 0.680867
solI AUTOINDUCER SYNTHESIS PROTEIN SOLIchromosome CDS3537741 615 - 0.728455
tauD PUTATIVE ALPHA-KETOGLUTARATE-DEPENDENT TAURINE DIOXYGENASE OXIDOREDUCTASE PROTEINchromosome CDS791697 906 + 0.700883
tek TEK SIGNAL PEPTIDE PROTEINmegaplasmid CDS1262422 1710 - 0.652047
tsaC PROBABLE TOLUENESULFONATE ZINC-INDEPENDENT ALCOHOL DEHYDROGENASE OXIDOREDUCTASE PROTEINchromosome CDS2550438 759 + 0.69697