Gene list
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COG category: Inorganic ion transport and metabolism
Organism: Thiomicrospira denitrificans ATCC 33889, ATCC 33889
Number of genes found: 112
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| Thiomicrospira denitrificans ATCC 33889, ATCC 33889 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Tmden_0767 | C4-dicarboxylate transporter/malic acid transport protein | SubName: Full=C4-dicarboxylate transporter/malic acid transport protein; | chromosome | CDS | 793344 | 963 | - | 0.316719 |
| NA | Tmden_0772 | Heavy metal transport/detoxification protein | SubName: Full=Heavy metal transport/detoxification protein; | chromosome | CDS | 798450 | 285 | - | 0.329825 |
| NA | Tmden_0116 | ABC transporter-related protein | SubName: Full=ABC transporter-related protein; | chromosome | CDS | 121812 | 726 | - | 0.338843 |
| NA | Tmden_0115 | transport system permease protein | SubName: Full=Transport system permease protein; | chromosome | CDS | 120857 | 963 | - | 0.365524 |
| NA | Tmden_0794 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 823380 | 1236 | + | 0.345469 |
| NA | Tmden_0925 | Molybdate ABC transporter, permease protein | SubName: Full=Molybdate ABC transporter, permease protein; | chromosome | CDS | 960184 | 681 | + | 0.36417 |
| NA | Tmden_1521 | periplasmic nitrate reductase NapD | SubName: Full=Periplasmic nitrate reductase NapD; | chromosome | CDS | 1595532 | 390 | + | 0.341026 |
| NA | Tmden_1275 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1345167 | 543 | + | 0.325967 |
| NA | Tmden_1994 | Divalent cation transporter | SubName: Full=Divalent cation transporter; | chromosome | CDS | 2075767 | 1329 | - | 0.35064 |
| NA | Tmden_0661 | Ppx/GppA phosphatase | SubName: Full=Ppx/GppA phosphatase; | chromosome | CDS | 676068 | 1470 | - | 0.335374 |
| NA | Tmden_0159 | Ferredoxin--nitrite reductase | SubName: Full=Assimilatory sulfite reductase (Ferredoxin); EC=1.7.7.1; | chromosome | CDS | 159721 | 1560 | + | 0.357051 |
| NA | Tmden_1349 | NnrS | SubName: Full=NnrS; | chromosome | CDS | 1421467 | 1251 | + | 0.388489 |
| NA | Tmden_1749 | Binding-protein-dependent transport systems inner membrane component | SubName: Full=Binding-protein-dependent transport systems inner membrane component; | chromosome | CDS | 1833152 | 960 | - | 0.360417 |
| NA | Tmden_1072 | K+-dependent Na+/Ca+ exchanger related-protein | SubName: Full=K+-dependent Na+/Ca+ exchanger related-protein; | chromosome | CDS | 1134698 | 927 | + | 0.329018 |
| NA | Tmden_0923 | Molybdenum ABC transporter, periplasmic binding protein | SubName: Full=Molybdenum ABC transporter, periplasmic binding protein; | chromosome | CDS | 959017 | 747 | + | 0.365462 |
| NA | Tmden_0421 | transporter, putative | SubName: Full=Transporter, putative; | chromosome | CDS | 421082 | 1374 | + | 0.36754 |
| NA | Tmden_0431 | Sulphate transporter | SubName: Full=Sulphate transporter; | chromosome | CDS | 433865 | 1485 | - | 0.379798 |
| NA | Tmden_1331 | TrkA-N | SubName: Full=TrkA-N; | chromosome | CDS | 1403623 | 699 | - | 0.30186 |
| NA | Tmden_0101 | nitrate transporter | SubName: Full=Nitrate transporter; | chromosome | CDS | 107076 | 333 | + | 0.324324 |
| NA | Tmden_0646 | 3(2),5-bisphosphate nucleotidase | SubName: Full=3(2),5-bisphosphate nucleotidase; | chromosome | CDS | 658673 | 756 | + | 0.350529 |
| NA | Tmden_1342 | Divalent cation transporter | SubName: Full=Divalent cation transporter; | chromosome | CDS | 1413700 | 1344 | - | 0.357887 |
| NA | Tmden_0117 | Periplasmic binding protein | SubName: Full=Periplasmic binding protein; | chromosome | CDS | 122534 | 813 | - | 0.362854 |
| NA | Tmden_0308 | Rhodanese-like | SubName: Full=Rhodanese-like protein; | chromosome | CDS | 314103 | 738 | - | 0.289973 |
| NA | Tmden_0019 | PhnA protein | SubName: Full=PhnA protein; | chromosome | CDS | 24423 | 555 | + | 0.376577 |
| NA | Tmden_0643 | Rh-like protein/ammonium transporter | SubName: Full=Amt-family transporter; | chromosome | CDS | 654669 | 1176 | + | 0.370748 |
| NA | Tmden_1318 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1387968 | 480 | - | 0.320833 |
| NA | Tmden_0962 | Na+/Pi-cotransporter | SubName: Full=Na+/Pi-cotransporter; | chromosome | CDS | 1002921 | 1737 | + | 0.320092 |
| NA | Tmden_0158 | Sulfate adenylyltransferase, large subunit | RecName: Full=Sulfate adenylyltransferase subunit 1; EC=2.7.7.4; AltName: Full=ATP-sulfurylase large subunit; AltName: Full=Sulfate adenylate transferase; | chromosome | CDS | 158299 | 1413 | + | 0.363765 |
| NA | Tmden_0051 | Periplasmic solute binding protein | SubName: Full=Periplasmic solute binding protein; | chromosome | CDS | 57079 | 879 | - | 0.358362 |
| NA | Tmden_1538 | transport system permease protein | SubName: Full=Transport system permease protein; | chromosome | CDS | 1610468 | 1026 | + | 0.415205 |
| NA | Tmden_0036 | histidine kinase | SubName: Full=Histidine kinase; EC=2.7.3.-; | chromosome | CDS | 42449 | 2571 | + | 0.311552 |
| NA | Tmden_1784 | Na+/H+ antiporter NhaA | RecName: Full=Na(+)/H(+) antiporter NhaA; AltName: Full=Sodium/proton antiporter NhaA; | chromosome | CDS | 1867196 | 1335 | + | 0.379775 |
| NA | Tmden_0641 | Ammonium transporter | SubName: Full=Amt-family transporter; | chromosome | CDS | 652866 | 1251 | + | 0.39968 |
| NA | Tmden_1762 | FeoA | SubName: Full=FeoA; | chromosome | CDS | 1845893 | 231 | - | 0.320346 |
| NA | Tmden_0503 | Phosphate transporter | SubName: Full=Phosphate transporter; | chromosome | CDS | 506345 | 1650 | - | 0.350909 |
| NA | Tmden_1348 | ABC transporter-related protein | SubName: Full=ABC transporter-related protein; | chromosome | CDS | 1420730 | 741 | + | 0.385965 |
| NA | Tmden_2079 | Sodium/hydrogen exchanger | SubName: Full=Sodium/hydrogen exchanger; | chromosome | CDS | 2167803 | 1620 | - | 0.338889 |
| NA | Tmden_1541 | Periplasmic binding protein | SubName: Full=Periplasmic binding protein; | chromosome | CDS | 1613102 | 975 | + | 0.398974 |
| NA | Tmden_1691 | Mg2+ transporter protein, CorA-like | SubName: Full=Mg2+ transporter protein, CorA-like protein; | chromosome | CDS | 1770982 | 783 | + | 0.310345 |
| NA | Tmden_1489 | Sulfate adenylyltransferase | SubName: Full=Sulfate adenylyltransferase; EC=2.7.7.4; | chromosome | CDS | 1564827 | 1185 | + | 0.32827 |
| NA | Tmden_1223 | Heavy metal translocating P-type ATPase | SubName: Full=Heavy metal translocating P-type ATPase; | chromosome | CDS | 1289588 | 2166 | + | 0.372576 |
| NA | Tmden_1346 | putative sulfonate/nitrate transport system substrate-binding protein | SubName: Full=Putative sulfonate/nitrate transport system substrate-binding protein; | chromosome | CDS | 1418976 | 984 | + | 0.373984 |
| NA | Tmden_0499 | Polysulphide reductase, NrfD | SubName: Full=NrfD-related membrane anchor; | chromosome | CDS | 500910 | 900 | + | 0.366667 |
| NA | Tmden_1332 | TrkA-N:Ion transport protein | SubName: Full=TrkA-N:Ion transport protein; | chromosome | CDS | 1404321 | 1554 | - | 0.299871 |
| NA | Tmden_0100 | nitrate transporter | SubName: Full=Nitrate transporter; | chromosome | CDS | 106659 | 324 | + | 0.382716 |
| NA | Tmden_0045 | putative MFS metabolite transporter | SubName: Full=Putative MFS metabolite transporter; | chromosome | CDS | 52872 | 1182 | + | 0.320643 |
| NA | Tmden_1943 | Na+/Pi-cotransporter | SubName: Full=Na+/Pi-cotransporter; | chromosome | CDS | 2025827 | 1755 | - | 0.338462 |
| NA | Tmden_1272 | ferric uptake regulator, FUR family | SubName: Full=Ferric uptake regulator, Fur family; | chromosome | CDS | 1341896 | 477 | + | 0.324948 |
| NA | Tmden_1539 | ABC transporter-related protein | SubName: Full=ABC transporter-related protein; | chromosome | CDS | 1611484 | 786 | + | 0.398219 |
| NA | Tmden_1287 | Rhodanese-like | SubName: Full=Rhodanese-like protein; | chromosome | CDS | 1359664 | 480 | - | 0.375 |
| NA | Tmden_1241 | Ferredoxin--nitrite reductase | SubName: Full=Ferredoxin--nitrite reductase; EC=1.7.7.1; | chromosome | CDS | 1308070 | 1704 | + | 0.3527 |
| NA | Tmden_0149 | Arsenate reductase | SubName: Full=Arsenate reductase; | chromosome | CDS | 153119 | 354 | - | 0.330508 |
| NA | Tmden_2064 | ABC transporter-related protein | SubName: Full=ABC transporter-related protein; | chromosome | CDS | 2154601 | 765 | - | 0.355556 |
| NA | Tmden_0567 | Binding-protein-dependent transport systems inner membrane component | SubName: Full=Binding-protein-dependent transport systems inner membrane component; | chromosome | CDS | 569537 | 795 | + | 0.338365 |
| NA | Tmden_1761 | Ferrous iron transport protein B | SubName: Full=Ferrous iron transport protein B; | chromosome | CDS | 1843761 | 2136 | - | 0.355805 |
| NA | Tmden_1601 | TrkA | SubName: Full=TrkA; | chromosome | CDS | 1681803 | 1137 | - | 0.347405 |
| NA | Tmden_1006 | probable TonB-dependent receptor | SubName: Full=Probable TonB-dependent receptor; | chromosome | CDS | 1056955 | 1281 | + | 0.366901 |
| NA | Tmden_1347 | Binding-protein-dependent transport systems inner membrane component | SubName: Full=Binding-protein-dependent transport systems inner membrane component; | chromosome | CDS | 1419960 | 783 | + | 0.399745 |
| NA | Tmden_0279 | TonB-dependent receptor | SubName: Full=TonB-dependent receptor; | chromosome | CDS | 295915 | 2193 | - | 0.344733 |
| NA | Tmden_0999 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1050690 | 1107 | + | 0.345077 |
| NA | Tmden_0377 | TonB-dependent receptor | SubName: Full=TonB-dependent receptor; | chromosome | CDS | 378139 | 1986 | - | 0.348439 |
| NA | Tmden_0529 | TrkA | SubName: Full=TrkA; | chromosome | CDS | 529772 | 654 | - | 0.356269 |
| NA | Tmden_0736 | Sulphate anion transporter | SubName: Full=Sulphate anion transporter; | chromosome | CDS | 757479 | 1638 | - | 0.367521 |
| NA | Tmden_1578 | Polyphosphate kinase | RecName: Full=Polyphosphate kinase; EC=2.7.4.1; AltName: Full=ATP-polyphosphate phosphotransferase; AltName: Full=Polyphosphoric acid kinase; | chromosome | CDS | 1653941 | 2103 | + | 0.35378 |
| NA | Tmden_1371 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1441627 | 1209 | - | 0.331679 |
| NA | Tmden_0883 | Heavy metal efflux pump CzcA | SubName: Full=Resistance-Nodulation-Cell Division Superfamily transporter; | chromosome | CDS | 913295 | 3048 | + | 0.345801 |
| NA | Tmden_1883 | Periplasmic phosphate binding protein | RecName: Full=Phosphate-binding protein PstS; | chromosome | CDS | 1963269 | 1005 | - | 0.369154 |
| NA | Tmden_0716 | Formate/nitrite transporter | SubName: Full=Formate/nitrite transporter; | chromosome | CDS | 737557 | 813 | + | 0.384994 |
| NA | Tmden_1887 | Phosphate transport system permease protein 1 | RecName: Full=Phosphate import ATP-binding protein PstB; EC=3.6.3.27; AltName: Full=ABC phosphate transporter; AltName: Full=Phosphate-transporting ATPase; | chromosome | CDS | 1967002 | 786 | + | 0.354962 |
| NA | Tmden_0064 | ABC transporter-related protein | SubName: Full=ABC transporter-related protein; | chromosome | CDS | 67901 | 783 | + | 0.374202 |
| NA | Tmden_0050 | putative manganese transport system permease protein | SubName: Full=Putative manganese transport system permease protein; | chromosome | CDS | 56333 | 750 | - | 0.350667 |
| NA | Tmden_0007 | TonB-dependent receptor | SubName: Full=TonB-dependent receptor; | chromosome | CDS | 8748 | 1926 | + | 0.341121 |
| NA | Tmden_1585 | Cytochrome-c peroxidase | SubName: Full=Cytochrome-c peroxidase; EC=1.11.1.5; | chromosome | CDS | 1660826 | 1194 | - | 0.358459 |
| NA | Tmden_0922 | Cation efflux protein | SubName: Full=Cation efflux protein; | chromosome | CDS | 958014 | 912 | + | 0.337719 |
| NA | Tmden_1549 | TonB-dependent receptor | SubName: Full=TonB-dependent receptor; | chromosome | CDS | 1620112 | 1971 | + | 0.369356 |
| NA | Tmden_2065 | Periplasmic solute binding protein | SubName: Full=Periplasmic solute binding protein; | chromosome | CDS | 2155362 | 915 | - | 0.344262 |
| NA | Tmden_0847 | Cation efflux protein | SubName: Full=Cation efflux protein; | chromosome | CDS | 876533 | 894 | - | 0.338926 |
| NA | Tmden_1944 | Sodium/hydrogen exchanger | SubName: Full=Sodium/hydrogen exchanger; | chromosome | CDS | 2027596 | 1149 | - | 0.327241 |
| NA | Tmden_1885 | Phosphate ABC transporter, permease protein PstC | SubName: Full=Phosphate ABC transporter, permease protein PstC; | chromosome | CDS | 1965300 | 858 | + | 0.36014 |
| NA | Tmden_1300 | Periplasmic copper-binding | SubName: Full=Periplasmic copper-binding; | chromosome | CDS | 1372814 | 1218 | + | 0.32266 |
| NA | Tmden_1984 | nitric-oxide reductase, B subunit, putative | SubName: Full=Nitric-oxide reductase B subunit NorB; | chromosome | CDS | 2064733 | 1425 | + | 0.392281 |
| NA | Tmden_1498 | rhodanese-like domain protein | SubName: Full=Rhodanese-like domain protein; | chromosome | CDS | 1572569 | 414 | + | 0.316425 |
| NA | Tmden_1639 | Outer membrane cobalamin receptor protein-like | SubName: Full=Outer membrane cobalamin receptor protein-like protein; | chromosome | CDS | 1720943 | 1863 | + | 0.330649 |
| NA | Tmden_0214 | Cytochrome-c peroxidase | SubName: Full=Cytochrome c peroxidase; EC=1.11.1.5; | chromosome | CDS | 218027 | 1017 | - | 0.382498 |
| NA | Tmden_1916 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1997855 | 642 | - | 0.347352 |
| NA | Tmden_0313 | Arsenical pump membrane protein | RecName: Full=Arsenical pump membrane protein; | chromosome | CDS | 317024 | 1254 | - | 0.338915 |
| NA | Tmden_0062 | Cobalamin (vitamin B12) biosynthesis CbiM protein | SubName: Full=Cobalamin (Vitamin B12) biosynthesis CbiM protein; | chromosome | CDS | 66729 | 642 | + | 0.397196 |
| NA | Tmden_1981 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2062765 | 405 | - | 0.340741 |
| NA | Tmden_0569 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 570981 | 1194 | + | 0.277219 |
| NA | Tmden_1323 | Catalase | RecName: Full=Catalase; EC=1.11.1.6; | chromosome | CDS | 1391814 | 1437 | + | 0.393876 |
| NA | Tmden_0168 | Sodium/hydrogen exchanger | SubName: Full=Sodium/hydrogen exchanger; | chromosome | CDS | 168612 | 1164 | - | 0.348797 |
| NA | Tmden_1888 | Phosphate uptake regulator-like | SubName: Full=Phosphate uptake regulator-like protein; | chromosome | CDS | 1967833 | 672 | + | 0.313988 |
| NA | Tmden_0276 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 294404 | 597 | - | 0.355109 |
| NA | Tmden_1325 | Sodium/sulphate symporter | SubName: Full=Sodium/sulphate symporter; | chromosome | CDS | 1393874 | 1344 | - | 0.369048 |
| NA | Tmden_1129 | Superoxide dismutase | RecName: Full=Superoxide dismutase; EC=1.15.1.1; | chromosome | CDS | 1180759 | 678 | - | 0.377581 |
| NA | Tmden_0807 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 842513 | 486 | - | 0.255144 |
| NA | Tmden_1108 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1164692 | 324 | - | 0.339506 |
| NA | Tmden_0576 | Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase | SubName: Full=Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase; | chromosome | CDS | 583783 | 2454 | + | 0.335778 |
| NA | Tmden_2063 | ABC-3 | SubName: Full=ABC-3; | chromosome | CDS | 2153802 | 798 | - | 0.365915 |
| NA | Tmden_1369 | K+-dependent Na+/Ca+ exchanger related-protein | SubName: Full=K+-dependent Na+/Ca+ exchanger related-protein; | chromosome | CDS | 1439699 | 981 | + | 0.359837 |
| NA | Tmden_0118 | TonB-dependent receptor | SubName: Full=TonB-dependent receptor; | chromosome | CDS | 123356 | 1902 | - | 0.355415 |
| NA | Tmden_0926 | ABC transporter-related protein | SubName: Full=ABC transporter-related protein; | chromosome | CDS | 960861 | 873 | + | 0.333333 |
| NA | Tmden_0162 | Carbonate dehydratase | RecName: Full=Carbonic anhydrase; EC=4.2.1.1; | chromosome | CDS | 163617 | 678 | + | 0.365782 |
| NA | Tmden_1005 | TonB-dependent receptor | SubName: Full=TonB-dependent receptor; | chromosome | CDS | 1054732 | 2100 | + | 0.388095 |
| NA | Tmden_1547 | TonB-dependent receptor, plug | SubName: Full=TonB-dependent receptor, plug; | chromosome | CDS | 1617586 | 2001 | + | 0.381309 |
| NA | Tmden_1886 | Phosphate transport system permease protein 2 | SubName: Full=Phosphate transport system permease protein 2; | chromosome | CDS | 1966157 | 846 | + | 0.37234 |
| NA | Tmden_2011 | Heavy metal efflux pump CzcA | SubName: Full=Resistance-Nodulation-Cell Division Superfamily transporter; | chromosome | CDS | 2092511 | 3066 | - | 0.3803 |
| NA | Tmden_0070 | Major facilitator superfamily MFS_1 | SubName: Full=Major facilitator superfamily MFS_1; | chromosome | CDS | 77263 | 1317 | - | 0.367502 |
| NA | Tmden_1026 | Periplasmic copper-binding | SubName: Full=Periplasmic copper-binding; | chromosome | CDS | 1080529 | 1221 | - | 0.326781 |
| NA | Tmden_1817 | NADH-plastoquinone oxidoreductase, chain 5 | SubName: Full=NADH-plastoquinone oxidoreductase, chain 5; EC=1.6.99.5; | chromosome | CDS | 1899007 | 1923 | - | 0.375975 |
| NA | Tmden_1236 | Carbonate dehydratase | SubName: Full=Carbonate dehydratase; EC=4.2.1.1; | chromosome | CDS | 1302249 | 759 | - | 0.362319 |
| NA | Tmden_1145 | Sodium/sulphate symporter | SubName: Full=Sodium/sulphate symporter; | chromosome | CDS | 1200883 | 1449 | - | 0.363009 |
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