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2024-05-03 17:34:00

Gene list

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COG category: Inorganic ion transport and metabolism
Organism: Shigella flexneri 2a str. 2457T, 2457T

Number of genes found: 245

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Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA S1853 putative amino acid/amine transport proteinchromosome CDS1792442 1161 + 0.459087
NA S0691 putative bacteriophage proteinchromosome CDS698005 357 - 0.546219
NA S2711 putative sodium bile acid symporter family proteinchromosome CDS2604636 1068 + 0.628277
NA S1278 putative ferric enterobactin transport ATP-binding proteinchromosome CDS1237081 759 - 0.540184
NA S3755 hypothetical proteinchromosome CDS3651915 369 - 0.479675
NA S2894 hypothetical proteinchromosome CDS2776847 960 + 0.548958
NA S0825 putative transport system permease proteinchromosome CDS812211 912 + 0.528509
NA S0500 hypothetical proteinchromosome CDS507702 252 + 0.47619
NA S1753 possible chaperonechromosome CDS1687412 366 - 0.42623
NA S1563 putative transport proteinchromosome CDS1520895 1380 + 0.49058
NA S3040 putative transport proteinchromosome CDS2925463 714 + 0.495798
NA S1280 putative ATP-binding protein of ABC transporterchromosome CDS1238816 1023 - 0.540567
NA S1089 putative cytochromechromosome CDS1069073 708 + 0.556497
NA S3117 putative ATP-binding protein of ABC transport systemchromosome CDS3001973 678 + 0.542773
NA S3118 putative ATP-binding protein of ABC transport systemchromosome CDS3002644 678 + 0.529499
NA S0824 putative transport system permease proteinchromosome CDS811288 921 + 0.533116
NA S1446 hypothetical proteinchromosome CDS1409073 984 + 0.520325
NA S2533 putative transport proteinchromosome CDS2426511 1179 - 0.569126
NA S4821 resistance proteinchromosome CDS1988645 333 - 0.432432
NA S2996 putative transport proteinchromosome CDS2874438 1353 - 0.522542
NA S1279 putative iron compound ABC transporter permease proteinchromosome CDS1237836 981 - 0.541284
NA S2632 hypothetical proteinchromosome CDS2523715 900 - 0.558889
NA S1513 putative transport proteinchromosome CDS1474798 1485 - 0.513131
NA S1752 possible chaperonechromosome CDS1687096 330 - 0.518182
NA S1874 putative ATP-binding component of a transport systemchromosome CDS1816087 987 + 0.541033
NA S1745 putative chloride channel proteinchromosome CDS1679513 1317 + 0.538345
NA S2688 putative oxidoreductasechromosome CDS2583901 360 + 0.522222
NA S1852 putative transport system permease proteinchromosome CDS1791003 1146 + 0.446771
NA S0255 hypothetical proteinchromosome CDS259881 345 - 0.443478
NA S3116 hypothetical lipoproteinchromosome CDS3001587 399 + 0.546366
NA S0841 putative DEOR-type transcriptional regulatorchromosome CDS827704 1209 - 0.544251
NA S2594 hypothetical proteinchromosome CDS2490607 1257 + 0.538584
NA S1269 hypothetical proteinchromosome CDS1228731 1611 - 0.535692
NA S1873 putative transport proteinchromosome CDS1815194 897 + 0.535117
abc S0192 ATP-binding component of a transporterchromosome CDS211998 1032 - 0.523256
ampG S0384 beta-lactamase induction signal transducer AmpGchromosome CDS386970 1476 - 0.542683
amtB S0402 probable ammonium transporterchromosome CDS407860 1287 + 0.555556
apaG S0049 hypothetical proteinchromosome CDS50033 378 - 0.518519
araE S3049 low-affinity L-arabinose transport system proton symport proteinchromosome CDS2935806 1419 - 0.512333
arsB S4233 arsenical pump membrane proteinchromosome CDS4147018 1290 + 0.544961
arsC S4234 arsenate reductasechromosome CDS4148320 426 + 0.521127
bcr S2398 bicyclomycin resistance protein; transmembrane proteinchromosome CDS2281226 1191 - 0.530647
bfr S4407 bacterioferrinchromosome CDS4333732 477 + 0.417191
chaA S1303 sodium-calcium/proton antiporterchromosome CDS1266276 1101 - 0.485922
chaC S1305 cation transport regulatorchromosome CDS1268013 717 + 0.545328
cmr S0838 chloramphenicol resistance pump Cmrchromosome CDS825252 1227 + 0.521597
corA S3861 Mg2+ transport, system Ichromosome CDS3757791 951 - 0.526814
cutA S4558 divalent cation tolerance proteinchromosome CDS4460831 339 - 0.501475
cutC S2005 copper homeostasis proteinchromosome CDS1928680 441 - 0.498866
cutF S0185 copper homeostasis protein (lipoprotein)chromosome CDS205700 711 + 0.513361
cyaY S3876 hypothetical proteinchromosome CDS3770885 321 + 0.535826
cysA S2623 ATP-binding component of sulfate permease A proteinchromosome CDS2515154 1098 - 0.584699
cysC S2966 adenosine 5-phosphosulfate kinasechromosome CDS2840228 606 - 0.516502
cysI S2972 sulfite reductase, alpha subunitchromosome CDS2847114 1713 - 0.556918
cysJ S2973 sulfite reductase (NADPH), flavoprotein beta subunitchromosome CDS2848826 1800 - 0.561111
cysN S2967 ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1chromosome CDS2840833 1428 - 0.540616
cysP S2626 thiosulfate binding proteinchromosome CDS2517949 1017 - 0.530973
cysQ S4537 ammonium transport system structural proteinchromosome CDS4442679 741 - 0.554656
cysW S2624 sulfate transport system permease W proteinchromosome CDS2516241 450 - 0.573333
dgoT S3998 D-galactonate transport proteinchromosome CDS3892275 1338 - 0.530643
dppB S4192 dipeptide transport system permease protein 1chromosome CDS4098197 1020 + 0.561765
dppC S4193 dipeptide transport system permease protein 2chromosome CDS4099226 903 + 0.589147
dppD S4194 putative ATP-binding component of dipeptide transport systemchromosome CDS4100139 984 + 0.558943
dps S0805 global regulator protein Dpschromosome CDS788627 504 - 0.492063
emrB S2900 multidrug resistant protein emrBchromosome CDS2781149 1539 + 0.560754
emrD S3980 multidrug resistance protein Dchromosome CDS3875818 1152 + 0.574653
emrY S2571 multidrug resistance protein Ychromosome CDS2461840 1539 - 0.417804
exuT S3340 transport protein of hexuronateschromosome CDS3224314 1299 + 0.543495
feoA S4336 ferrous iron transport protein Achromosome CDS4263019 228 - 0.491228
feoB S4335 ferrous iron transport protein Bchromosome CDS4260681 2322 - 0.546942
fepA S0502 ferrienterobactin receptor precursorchromosome CDS508870 2241 - 0.541722
fepB S0512 ferric enterobactin (enterochelin) binding proteinchromosome CDS522892 957 - 0.560084
fepC S0508 ATP-binding component of ferric enterobactin transportchromosome CDS518740 816 - 0.53799
fepD S0510 ferric enterobactin (enterochelin) transport proteinchromosome CDS520541 1017 - 0.605703
fepG S0509 ferric enterobactin transport proteinchromosome CDS519552 993 - 0.584089
fes S0503 enterochelin esterasechromosome CDS511353 1203 + 0.54281
fhuA S0145 outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80chromosome CDS158753 2244 + 0.512923
fhuB S0148 ferrichrome-iron transport protein FhuBchromosome CDS162731 1983 + 0.594554
fhuC S0146 ATP-binding component of hydroxymate-dependent iron transportchromosome CDS161047 798 + 0.561404
fhuD S0147 ferrichrome-iron transport protein FhuDchromosome CDS161844 891 + 0.542088
flhE S2012 flagellar proteinchromosome CDS1934087 339 - 0.557522
focA S0963 probable formate transporter (formate channel 1)chromosome CDS939996 858 - 0.486014
fsr S0431 fosmidomycin resistance proteinchromosome CDS439698 1221 - 0.523342
ftn S2044 cytoplasmic ferritinchromosome CDS1961656 498 + 0.429719
fur S0621 negative regulatorchromosome CDS637318 447 + 0.480984
galP S3138 galactose:proton symporter, MFS familychromosome CDS3018815 1356 + 0.533186
glpE S4317 protein of glp regulonchromosome CDS4239630 327 + 0.544343
gppA S3907 guanosine pentaphosphatase, exopolyphosphatasechromosome CDS3800498 1485 + 0.535354
hcaA1 S2757 large terminal subunit of phenylpropionate dioxygenasechromosome CDS2647472 1362 + 0.530837
hcaC S2759 ferredoxin subunit of phenylpropionate dioxygenasechromosome CDS2649348 321 + 0.554517
hcaT S2755 MFS (major facilitator superfamily) transporterchromosome CDS2645147 1140 - 0.564035
hpaX S4648 putative 4-hydroxyphenylacetate permeasechromosome CDS4542204 1356 - 0.463864
hycC S2932 membrane-spanning protein of hydrogenase 3 (part of FHL complex)chromosome CDS2810368 1794 - 0.58194
hyfD S2677 hydrogenase 4 membrane subunitchromosome CDS2571001 1440 + 0.555556
hyfF S2679 hydrogenase 4 membrane subunitchromosome CDS2573107 1587 + 0.541903
imm S4057 putative membrane transport proteinchromosome CDS3954544 1194 + 0.569514
iutA S4052 putative ferric siderophore receptorchromosome CDS3946459 2196 - 0.526412
katE S1613 catalase; hydroperoxidase HPII(III)chromosome CDS1568272 2262 - 0.515473
katG S3727 catalase; hydroperoxidase HPI(I)chromosome CDS3622125 2181 - 0.558001
kch S1337 putative potassium channel proteinchromosome CDS1303964 1254 - 0.42185
kdpA S0609 ATPase of high-affinity potassium transport system, A chainchromosome CDS620828 1674 + 0.545998
kdpC S0611 potassium-transporting ATPasechromosome CDS624580 573 + 0.546248
kefB S4394 K+ efflux; NEM-activable K+/H+ antiporterchromosome CDS4322963 1662 + 0.545126
kefC S0046 K+ efflux antiporterchromosome CDS46574 1863 + 0.552872
kgtP S2822 alpha-ketoglutarate permeasechromosome CDS2714933 1299 - 0.487298
kup S3940 low-affinity potassium transport proteinchromosome CDS3831405 1869 - 0.514714
mdoB S4660 phosphoglycerol transferase Ichromosome CDS4555600 2253 - 0.521083
mdoG S1118 periplasmic glucans biosynthesis proteinchromosome CDS1089531 1536 + 0.495443
mgtA S4510 Mg2+ transport ATPase, P-type 1chromosome CDS4408991 2697 - 0.525028
mntH S2597 putative transport system permeasechromosome CDS2492445 1239 - 0.530266
modA S0549 molybdate-binding periplasmic protein; permeasechromosome CDS558194 774 - 0.510336
modB S0548 molybdate transport permease proteinchromosome CDS557505 690 - 0.53913
modC S0547 ATP-binding component of molybdate transportchromosome CDS556444 1059 - 0.537299
modF S0552 ATP-binding component of molybdate transport systemchromosome CDS560268 1473 + 0.520027
nanT S3477 sialic acid transporterchromosome CDS3348262 1521 - 0.552268
napD S2421 hypothetical proteinchromosome CDS2304208 264 - 0.545455
narK S1310 nitrate transport protein narkchromosome CDS1273484 1392 + 0.531609
narU S1892 nitrite extrusion protein 2chromosome CDS1833285 1389 + 0.491001
nhaA S0018 Na+/H+ antiporterchromosome CDS16139 1167 + 0.512425
nhaB S1263 Na+/H+ antiporterchromosome CDS1219768 1542 - 0.525292
nikB S4268 transport of nickel, membrane proteinchromosome CDS4187294 945 - 0.579894
nikC S4267 transport of nickel, membrane proteinchromosome CDS4186464 834 - 0.603118
nikD S4266 ATP-binding protein of nickel transport systemchromosome CDS4185700 765 - 0.589543
nikE S4265 ATP-binding protein of nickel transport systemchromosome CDS4184897 807 - 0.557621
nirC S4377 nitrite reductase, NirC proteinchromosome CDS4305676 555 - 0.547748
nirD S4378 nitrite reductase (NAD(P)H) subunitchromosome CDS4306608 327 - 0.538226
nrfA S3597 periplasmic cytochrome c(552)chromosome CDS3470539 1437 + 0.5254
nrfD S3600 formate-dependent nitrate reductase, transmembrane proteinchromosome CDS3473251 957 + 0.583072
nuoL S2489 NADH dehydrogenase I chain Lchromosome CDS2380775 1842 - 0.570033
nupG S3164 permease protein for nucleosideschromosome CDS3039941 1305 + 0.495785
oppB S1331 oligopeptide transport permease proteinchromosome CDS1297847 921 + 0.465798
oppC S1332 oligopeptide transport permease proteinchromosome CDS1298782 909 + 0.529153
oppD S1333 ATP-binding protein of oligopeptide ABC transport systemchromosome CDS1299702 1014 + 0.514793
phnA S3615 hypothetical proteinchromosome CDS3490011 336 - 0.46131
phnC S3613 ATP-binding component of phosphonate transporterchromosome CDS3488489 789 - 0.583016
phnD S3612 periplasmic binding protein component of phosphonate transporterchromosome CDS3487448 1017 - 0.548673
phnE S3611 membrane channel protein component of phosphonate transporterchromosome CDS3487169 225 - 0.586667
phoA S0252 alkaline phosphatasechromosome CDS256524 1485 - 0.521886
phoU S4041 negative regulator for pho regulon and putative enzyme in phosphate metabolismchromosome CDS3934224 726 - 0.522039
pitA S4244 low-affinity phosphate transport proteinchromosome CDS4158852 1500 - 0.54
pitB S3235 low-affinity phosphate transport proteinchromosome CDS3118852 1500 - 0.518667
ppk S2694 polyphosphate kinasechromosome CDS2589361 2067 + 0.486696
ppx S2695 exopolyphosphatasechromosome CDS2591432 1542 + 0.510376
proP S3618 low-affinity transport protein; proline permease IIchromosome CDS3494116 1503 + 0.499002
pspE S1395 phage shock proteinchromosome CDS1363669 348 + 0.505747
pstA S4043 high-affinity phosphate-specific transport proteinchromosome CDS3935829 891 - 0.569024
pstB S4042 ATP-binding component of high-affinity phosphate-specific transport systemchromosome CDS3934964 774 - 0.528424
pstC S4044 high-affinity phosphate-specific transport protein, cytoplasmic membrane componentchromosome CDS3936767 912 - 0.550439
pstS S4045 high-affinity phosphate-specific transport protein; periplasmic phosphate-binding proteinchromosome CDS3937765 1041 - 0.51585
sapD S1378 putative ATP-binding protein of peptide transport systemchromosome CDS1346774 993 - 0.50856
sbp S3752 periplasmic sulfate-binding proteinchromosome CDS3648413 990 - 0.511111
sitA S1964 Iron transport proteinchromosome CDS1902098 891 + 0.484848
sitB S1965 Iron transport protein, ATP-binding componentchromosome CDS1902988 828 + 0.513285
sitC S1966 Iron transport proteinchromosome CDS1903812 858 + 0.518648
sitD S1967 Iron transport protein, inner membrane componentchromosome CDS1904666 858 + 0.494172
sodA S3763 superoxide dismutase, manganesechromosome CDS3658141 621 - 0.536232
sodB S1816 superoxide dismutasechromosome CDS1754673 582 + 0.498282
sodC S1805 superoxide dismutase precursor (Cu-Zn)chromosome CDS1741826 537 - 0.530726
spy S1600 periplasmic proteinchromosome CDS1558202 486 + 0.50823
sugE S4571 suppresser of groELchromosome CDS4473305 468 + 0.527778
tauA S0274 taurine transport system periplasmic proteinchromosome CDS274458 897 - 0.565217
tauB S0273 taurine ATP-binding component of a transport systemchromosome CDS273678 768 - 0.559896
tauC S0272 taurine transport system permease proteinchromosome CDS272854 828 - 0.583333
tehA S1493 Tellurite resistance protein TehAchromosome CDS1454983 993 + 0.530715
trkA S3546 transport protein for potassiumchromosome CDS3409518 1377 + 0.498911
trkH S3827 potassium uptake proteinchromosome CDS3725765 1452 - 0.526171
xylE S3557 xylose-proton symportorchromosome CDS3422719 1476 - 0.485772
yaaU S0044 putative transport proteinchromosome CDS44609 1395 + 0.522581
yabK S0064 putative transport system permease proteinchromosome CDS70239 1611 - 0.585351
yabM S0067 putative transport proteinchromosome CDS74949 1179 + 0.480916
yadF S0125 putative carbonic anhdrasechromosome CDS139590 663 - 0.508296
yadQ S0150 putative channel transporterchromosome CDS166253 1422 + 0.537975
yadT S0153 hypothetical proteinchromosome CDS168808 801 - 0.526841
yaeC S0190 putative lipoproteinchromosome CDS210497 816 - 0.485294
yaeE S0191 putative transport system permease proteinchromosome CDS211352 654 - 0.51682
yajK S0368 putative oxidoreductasechromosome CDS370056 1449 + 0.516218
ybaL S0430 putative transport proteinchromosome CDS437784 1677 - 0.550984
ybaR S0436 putative ATPasechromosome CDS444996 2505 - 0.578443
ybdA S0511 hypothetical membrane protein P43chromosome CDS521656 1233 + 0.570965
ybdE S0490 putative inner membrane component for iron transportchromosome CDS496745 3144 + 0.554389
ybeX S0646 putative transport proteinchromosome CDS656168 879 + 0.516496
ybgR S0560 putative transport system permease proteinchromosome CDS569243 942 + 0.528662
ybhI S0938 putative membrane pump proteinchromosome CDS919720 1371 + 0.503282
ybiR S0811 hypothetical proteinchromosome CDS793865 1119 + 0.520107
ybjM S0844 hypothetical proteinchromosome CDS831662 378 + 0.489418
ycaD S0898 putative transport proteinchromosome CDS892021 1149 + 0.517842
ycbE S0994 putative ATP-binding component of a transport systemchromosome CDS982635 768 - 0.550781
ycbO S1000 hypothetical proteinchromosome CDS986680 1002 - 0.52495
yccK S1037 putative sulfite reductasechromosome CDS1022223 387 - 0.459948
ycdB S1091 hypothetical proteinchromosome CDS1070971 1266 + 0.538705
ycdO S1090 hypothetical proteinchromosome CDS1069838 1128 + 0.515071
yceL S1149 hypothetical proteinchromosome CDS1114771 1209 - 0.55335
ychM S1293 hypothetical proteinchromosome CDS1255720 1653 - 0.546884
ychN S1306 hypothetical proteinchromosome CDS1268773 354 - 0.516949
ydcG S1488 putative glycoproteinchromosome CDS1451266 1656 + 0.50785
yddB S1861 hypothetical proteinchromosome CDS1800872 2361 + 0.456586
ydeF S1687 putative transport proteinchromosome CDS1632862 1119 - 0.495085
ydhC S1820 putative transport proteinchromosome CDS1759190 1212 + 0.535479
ydiE S1643 hypothetical proteinchromosome CDS1595580 192 - 0.505208
ydjE S1569 putative transport proteinchromosome CDS1527148 1359 + 0.452539
yeaN S1548 putative amino acid/amine transport proteinchromosome CDS1507405 1062 - 0.533898
yebI S1935 hypothetical proteinchromosome CDS1876483 786 + 0.510178
yebL S1933 putative adhesinchromosome CDS1874720 948 - 0.490506
yebM S1934 putative ATP-binding component of a transport systemchromosome CDS1875731 756 + 0.488095
yecI S2041 ferritin-like proteinchromosome CDS1959864 504 + 0.482143
yegB S2267 putative transport proteinchromosome CDS2151108 1416 + 0.554379
yeiO S2384 putative transportchromosome CDS2265743 1179 + 0.53011
yfbS S2503 putative transport proteinchromosome CDS2397089 1833 - 0.524277
yfdC S2560 putative transport proteinchromosome CDS2453831 822 + 0.487835
yffB S2664 hypothetical proteinchromosome CDS2557438 357 + 0.470588
yfjD S2850 putative transport proteinchromosome CDS2742550 684 + 0.513158
ygaP S2882 hypothetical proteinchromosome CDS2766051 525 + 0.462857
ygcS S2980 putative transport proteinchromosome CDS2855260 1410 - 0.529078
ygeD S3043 putative resistance proteinschromosome CDS2927713 1191 - 0.558354
ygiE S3285 hypothetical proteinchromosome CDS3164349 774 + 0.533592
ygjE S3309 hypothetical proteinchromosome CDS3185725 1464 + 0.555328
ygjT S3335 putative transport proteinchromosome CDS3217482 966 + 0.541408
ygjV S3337 hypothetical proteinchromosome CDS3220281 552 - 0.5
yhaU S3379 putative transport proteinchromosome CDS3256185 1335 - 0.506367
yheA S4406 hypothetical proteinchromosome CDS4333465 195 + 0.451282
yheL S4401 hypothetical proteinchromosome CDS4328461 288 + 0.5
yheM S4400 hypothetical proteinchromosome CDS4328094 360 + 0.494444
yheN S4399 hypothetical proteinchromosome CDS4327708 387 + 0.55814
yhfC S4380 putative transport proteinchromosome CDS4309736 1182 - 0.51269
yhhS S4272 putative transportchromosome CDS4191706 1260 + 0.55873
yhjA S4174 putative cytochrome C peroxidasechromosome CDS4079901 1398 - 0.484979
yhjE S4212 putative transport proteinchromosome CDS4127224 1323 - 0.560091
yhjX S4188 putative resistance proteinchromosome CDS4092147 1209 + 0.515302
yibN S4118 hypothetical proteinchromosome CDS4017606 432 + 0.5
yidG S3982 hypothetical proteinchromosome CDS3877471 363 - 0.506887
yidY S4019 putative transport proteinchromosome CDS3914226 1176 + 0.529762
yieL S4034 putative xylanasechromosome CDS3926012 1176 - 0.503401
yieO S3930 putative transport proteinchromosome CDS3823225 1404 + 0.49359
yihN S3802 putative resistance proteinchromosome CDS3697339 1059 - 0.448536
yiiP S3754 putative transport system permease proteinchromosome CDS3650865 903 - 0.522702
yjaI S3661 hypothetical proteinchromosome CDS3552409 567 + 0.516755
yjbB S3644 putative alpha helix proteinchromosome CDS3525305 1632 - 0.558824
yjbK S3572 putative regulatorchromosome CDS3441336 576 - 0.522569
yjcB S3587 hypothetical proteinchromosome CDS3457386 351 - 0.535613
yjcE S3592 hypothetical proteinchromosome CDS3462755 1650 + 0.556364
yjiZ S4657 putative transport proteinchromosome CDS4551811 1362 - 0.517621
yojI S2425 putative ATP-binding component of a transport systemchromosome CDS2307815 1644 - 0.532847
yrbG S3454 hypothetical proteinchromosome CDS3323573 966 + 0.518634
ytfK S4534 hypothetical proteinchromosome CDS4440381 246 - 0.443089
zntA S4276 zinc-transporting ATPasechromosome CDS4194832 2199 - 0.579354