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2024-05-06 13:40:50

Gene list

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COG category: Inorganic ion transport and metabolism
Organism: Yersinia pestis KIM, KIM

Number of genes found: 261

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Yersinia pestis KIM, KIM
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
abc ATP-binding component of ATP transporterchromosome CDS3164448 987 - 0.535968
abc ATP-binding component of a transporterchromosome CDS3418525 1032 + 0.479651
ampG ampG proteinchromosome CDS1151521 1533 - 0.489889
amtB probable ammonium transporterchromosome CDS1175203 1296 + 0.513889
apaG hypothetical proteinchromosome CDS4095652 378 + 0.481481
arsB arsenical pump membrane proteinchromosome CDS944339 1290 - 0.504651
bcr bicyclomycin resistance protein; transmembrane proteinchromosome CDS3222179 1200 - 0.500833
bfr bacterioferrinchromosome CDS4441872 474 + 0.386076
chaA sodium-calcium/proton antiporterchromosome CDS2593102 1101 + 0.487738
cmr proton motive force efflux pump proteinchromosome CDS4512718 1230 + 0.517886
corA magnesium and cobalt permeasechromosome CDS439542 999 + 0.505506
corC putative magnesium and cobalt efflux proteinchromosome CDS1336054 879 - 0.460751
cutA divalent cation tolerance proteinchromosome CDS682709 360 - 0.497222
cutC putative copper homeostasis proteinchromosome CDS2492467 813 - 0.490775
cutF copper homeostasis protein (lipoprotein)chromosome CDS3424266 729 - 0.429355
cyaY hypothetical proteinchromosome CDS429315 327 - 0.477064
cysA ATP-binding component of sulfate permease A proteinchromosome CDS1627496 1119 + 0.521895
cysC adenosine 5'-phosphosulfate kinasechromosome CDS926545 705 + 0.507801
cysI sulfite reductase, alpha subunitchromosome CDS918669 1731 + 0.505488
cysJ sulfite reductase (NADPH), flavoprotein beta subunitchromosome CDS916789 1881 + 0.520999
cysN ATP-sulfurylase, subunit 1chromosome CDS925089 1518 + 0.503953
cysP thiosulfate binding periplasmic protein of sulfate/thiosulfate ABC transporterchromosome CDS1624788 1038 + 0.484586
cysQ sulfite synthesis pathway proteinchromosome CDS737236 744 + 0.53629
cysW sulfate/thiosulfate permeasechromosome CDS1626658 876 + 0.530822
dppB dipeptide transport system inner membrane permeasechromosome CDS4257574 948 + 0.535865
dppC dipeptide transport system permease protein 2chromosome CDS4258603 903 + 0.541528
dppC dipeptide transport system permease protein 2chromosome CDS819858 837 - 0.551971
dppD putative ATP-binding component of dipeptide ABC transport systemchromosome CDS4259474 1026 + 0.523392
dppD putative ATP-binding component of dipeptide transport systemchromosome CDS818987 909 - 0.512651
dps dps proteinchromosome CDS1851672 504 - 0.454365
emrB putative membrane translocasechromosome CDS1037490 1536 - 0.538411
emrE methylviologen resistancechromosome CDS2203701 339 + 0.457227
exuT putative hexuronate transporter transmembrane proteinchromosome CDS3558625 1308 + 0.495413
exuT transport of hexuronateschromosome CDS3998477 1305 + 0.51341
fcuA putative ferrichrome receptor, TonB dependentchromosome CDS2817540 2331 - 0.488631
fecE ATP-binding component of citrate-dependent iron(III) transport proteinchromosome CDS4487406 759 + 0.440053
feoA ferrous iron transport protein Achromosome CDS4367465 228 - 0.486842
feoB ferrous iron transport protein Bchromosome CDS4365058 2334 - 0.509854
fepB ferric enterobactin (enterochelin) binding proteinchromosome CDS3859173 1080 + 0.463889
fhuB inner membrane permease of ABC transporterchromosome CDS892284 2070 + 0.549275
fhuC ATP-binding component of hydroxymate-dependent iron ABC transporterchromosome CDS890477 795 + 0.543396
fhuD solute-binding periplasmic protein of hydroxamate-dependent iron ABC transporterchromosome CDS891271 1089 + 0.504132
focA probable formate transporterchromosome CDS3086489 858 + 0.452214
ftn cytoplasmic ferritinchromosome CDS2786245 621 - 0.371981
fur negative regulatorchromosome CDS1359874 447 - 0.427293
glpE protein of glp regulonchromosome CDS4353413 435 - 0.452874
hasR putative outer membrane receptorchromosome CDS337368 2493 + 0.443642
hcaT MFS (major facilitator superfamily) transporterchromosome CDS1473177 1158 + 0.501727
hmuR TonB-dependent outer membrane receptorchromosome CDS609822 2031 - 0.507632
hmuS hemin uptake system componentchromosome CDS608666 1038 - 0.504817
hmuT periplasmic binding proteinchromosome CDS607830 840 - 0.533333
hmuU ABC-type permeasechromosome CDS606829 1005 - 0.556219
hmuV ATP-binding protein of ABC transporterchromosome CDS606036 687 - 0.547307
hpaX hypothetical 4-hydroxyphenylacetate permeasechromosome CDS2802653 1368 - 0.491959
iutA aerobactin OM receptorchromosome CDS3731487 2181 + 0.50298
katE catalase; hydroperoxidase HPII(III)chromosome CDS3287118 1443 + 0.494109
katG catalase; hydroperoxidase HPI(I)chromosome CDS974635 2256 - 0.456117
kdpA ATPase of high-affinity potassium transport system, A chainchromosome CDS1414195 1689 - 0.537596
kdpB ATPase of high-affinity potassium transport system, B chainchromosome CDS1412035 2067 - 0.560716
kdpC ATPase of high-affinity potassium transport system, C-chainchromosome CDS1411221 603 - 0.517413
kefB K+ efflux; NEM-activable K+/H+ antiporterchromosome CDS4429888 1809 + 0.514096
kup low affinity potassium transport systemchromosome CDS5573 1869 + 0.457999
lacY galactoside permease (M protein)chromosome CDS2842618 1245 + 0.44498
mgtA Mg2+ transport ATPasechromosome CDS2003857 2700 + 0.467778
mntH putative manganese transport system permeasechromosome CDS1664038 1230 + 0.486179
modA molybdate-binding periplasmic protein of molybdate ABC transporterchromosome CDS3345238 792 - 0.507576
modA molybdate-binding periplasmic protein precursorchromosome CDS69830 819 + 0.482295
modB inner membrane permease protein of molybdate ABC transport systemchromosome CDS3344543 696 - 0.541667
modC ATP-binding component of molybdate transportchromosome CDS3343470 1080 - 0.542593
modF ATP-binding component of molybdate transport systemchromosome CDS3347522 1557 + 0.513166
nanT sialic acid transporterchromosome CDS1622941 1533 + 0.506197
napD hypothetical proteinchromosome CDS1600843 273 + 0.520147
nhaA Na+/H antiporter, pH dependentchromosome CDS4116676 1185 - 0.475105
nirC putative nitrite transporterchromosome CDS4396698 807 - 0.537794
nirD nitrite reductase (NAD(P)H) subunitchromosome CDS4397719 327 - 0.513761
nuoL NADH dehydrogenase I chain Lchromosome CDS1812199 1845 + 0.542005
oppB oligopeptide ABC transporter; permease proteinchromosome CDS2235528 921 + 0.438654
oppC oligopeptide ABC transporter; permease proteinchromosome CDS2236467 906 + 0.470199
oppD ATP-binding protein of oligopetide ABC transporterchromosome CDS2237384 1002 + 0.46507
phnA hypothetical proteinchromosome CDS1730211 342 - 0.459064
phnC ATP-binding component of phosphonate transportchromosome CDS3316200 873 - 0.412371
phnG phosphonate metabolism proteinchromosome CDS813541 477 - 0.538784
phnH phosphonate metabolism proteinchromosome CDS812915 630 - 0.549206
phnI phosphonate metabolism proteinchromosome CDS811737 1185 - 0.555274
phnJ phosphonate metabolism proteinchromosome CDS810863 882 - 0.529478
phnK ATP-binding component of phosphonate ABC transporterchromosome CDS810072 858 - 0.553613
phnL ATP-binding component of phosphonate ABC transporterchromosome CDS808964 720 - 0.545833
phnM phosphonate metabolism proteinchromosome CDS807831 1137 - 0.549692
phnN ATP-binding proteinchromosome CDS807250 582 - 0.530928
phoA alkaline phosphatasechromosome CDS2352615 1476 - 0.49729
phoU negative regulator for pho regulonchromosome CDS4580709 723 - 0.437068
pitA low-affinity inorganic phosphate transport proteinchromosome CDS4300821 1596 - 0.50188
ppk polyphosphate kinasechromosome CDS1553984 2151 - 0.437936
ppx exopolyphosphatasechromosome CDS1552414 1560 - 0.510256
psn pesticin/yersiniabactin outer membrane receptorchromosome CDS2673937 2022 + 0.564787
pstA inner membrane permeasechromosome CDS4582376 888 - 0.486486
pstB ATP-binding component of high-affinity phosphate-specific ABC transport systemchromosome CDS4581519 780 - 0.458974
pstB phosphate-specific transport componentchromosome CDS1560289 813 + 0.499385
pstC inner membrane permeasechromosome CDS4583265 972 - 0.465021
pstS periplasmic phosphate-binding proteinchromosome CDS4584450 1041 - 0.460134
rosA putative drug efflux proteinchromosome CDS1225486 1215 - 0.452675
rosB putative potassium efflux proteinchromosome CDS1223560 1692 - 0.513593
sbp periplasmic sulfate-binding protein of sulfate/thiosulfate ABC transporterchromosome CDS70898 1023 - 0.455523
setA putative efflux proteinchromosome CDS4047170 1182 - 0.494924
sodA superoxide dismutase, manganesechromosome CDS4526953 624 + 0.517628
sodB superoxide dismutase, ironchromosome CDS2153751 621 - 0.458937
sodC superoxide dismutase precursor (Cu-Zn)chromosome CDS914483 588 + 0.506803
sseA putative thiosulfate sulfurtransferasechromosome CDS3302986 855 + 0.511111
ssuA solute-binding periplasmic protein of aliphatic sulfonates, ABC transporterchromosome CDS260746 1137 - 0.508355
ssuB putative ATP-binding component of a transport system of aliphatic sulfonates ABC transporterchromosome CDS257961 855 - 0.553216
ssuC putative transport system permease protein of aliphatic sulfonates ABC transporterchromosome CDS258773 798 - 0.528822
sugE suppresses groEL, may be chaperonechromosome CDS692414 462 + 0.515152
tauA taurine-binding periplasmic protein of taurine ABC transport systemchromosome CDS4421424 1062 + 0.519774
tauB taurine ATP-binding component of ABC transport systemchromosome CDS4422494 768 + 0.536458
tauB taurine ATP-binding component of a transport systemchromosome CDS2335294 819 + 0.450549
tauC taurine ABC transport system inner membrane permease proteinchromosome CDS4423258 855 + 0.546199
terB putative tellurium resistance proteinchromosome CDS624278 456 + 0.467105
terC putative tellurium resistance proteinchromosome CDS624842 951 + 0.486856
thiP putative ABC transport system thiamine permease proteinchromosome CDS4052572 1620 + 0.543827
trkA potassium uptake proteinchromosome CDS4458260 1377 - 0.436456
trkH potassium uptake proteinchromosome CDS519911 1452 + 0.465565
y0010 putative permeasechromosome CDS9262 1425 - 0.464561
y0056 putative membrane pump proteinchromosome CDS68327 1428 + 0.446078
y0060 putative efflux permease proteinchromosome CDS73309 903 - 0.48505
y0066 putative solute-binding periplasmic protein of ABC transpoterchromosome CDS76410 489 - 0.466258
y0076 hypothetical proteinchromosome CDS84093 435 - 0.450575
y0147 hypothetical proteinchromosome CDS157461 975 + 0.498462
y0217 putative metabolite transport protein, permeasechromosome CDS232190 1365 - 0.49011
y0238 hypothetical proteinchromosome CDS253332 1671 - 0.524237
y0546 orfX protein in hemin uptake locuschromosome CDS612951 546 - 0.490842
y0564 hypotheticalchromosome CDS631996 258 + 0.437984
y0573 putative regulatorchromosome CDS648451 519 - 0.479769
y0734 dipeptide ABC transporter, ATP binding proteinchromosome CDS818284 717 - 0.524407
y0737 putative transport system permease proteinchromosome CDS820713 1050 - 0.529524
y0779 putative carbonic anhdrasechromosome CDS872565 933 - 0.439443
y0800 putative channel transporterchromosome CDS896388 1443 + 0.50104
y0804 hypothetical proteinchromosome CDS899221 843 - 0.53618
y0826 putative cytochrome oxidase subunitchromosome CDS927422 336 + 0.505952
y0848 putative cytochrome C peroxidasechromosome CDS948237 1380 - 0.465942
y0850 putative outer membrane receptorchromosome CDS950178 2196 + 0.464936
y0879 permease of major facilitator superfamilychromosome CDS988067 1341 - 0.499627
y0890 conserved hypothetical proteinchromosome CDS1000669 1284 - 0.464174
y0926 putative permease, major facilitator superfamilychromosome CDS1042575 1200 - 0.529167
y0980 putative solute-binding periplasmic protein for ABC transport systemchromosome CDS1109273 1065 + 0.489202
y1012 putative oxidoreductasechromosome CDS1139625 1452 + 0.471074
y1017 putative transport proteinchromosome CDS1143455 1371 - 0.48213
y1047 hypothetical proteinchromosome CDS1180062 369 - 0.406504
y1052 hypothetical proteinchromosome CDS1187591 354 + 0.483051
y1093 cation-translocating ATPasechromosome CDS1231390 2886 - 0.530146
y1137 hypotheticalchromosome CDS1278040 402 - 0.330846
y1232 putative permease of ABC transporterchromosome CDS1381883 984 + 0.512195
y1233 putative permease of ABC transporterchromosome CDS1382863 807 + 0.484511
y1235 putative ATP-binding protein of ABC transport systemchromosome CDS1384429 705 + 0.489362
y1245 putative nickel transport proteinchromosome CDS1393688 1083 + 0.410896
y1247 putative potassium channelchromosome CDS1395886 1176 + 0.414116
y1366 hypotheticalchromosome CDS1518062 399 - 0.263158
y1368 hypotheticalchromosome CDS1518981 396 - 0.260101
y1370 hypotheticalchromosome CDS1519832 723 - 0.412172
y1383 putative permease, major facilitator superfamilychromosome CDS1531695 1398 - 0.537911
y1395 putative divalent cation transporterchromosome CDS1550563 1476 - 0.509485
y1400 putative inner membrane permease of high-affinity phosphate-specific ABC transporterchromosome CDS1558546 1716 + 0.51049
y1411 putative oxidoreductasechromosome CDS1567946 459 - 0.46841
y1428 hypothetical proteinchromosome CDS1583910 399 - 0.521303
y1430 putative solute-binding periplasmic protein of ABC transporterchromosome CDS1585231 1110 + 0.473874
y1431 putative inner membrane permease of ABC transporterchromosome CDS1586435 1770 + 0.522599
y1434 putative sulfatasechromosome CDS1589745 1674 + 0.42055
y1457 hypothetical proteinchromosome CDS1615575 915 + 0.481967
y1479 putative NADH oxidasechromosome CDS1640419 1647 + 0.423801
y1556 hypotheticalchromosome CDS1726636 540 - 0.62037
y1626 putative ion transport proteinchromosome CDS1795160 1893 + 0.502377
y1652 putative sugar transporterchromosome CDS1826176 1356 + 0.4941
y1683 hypotheticalchromosome CDS1855876 939 + 0.462194
y1730 putative permease, major facilitator superfamilychromosome CDS1913107 1359 - 0.479029
y1829 putative resistance protein, transportchromosome CDS2014178 1236 - 0.435275
y1874 putative transport proteinchromosome CDS2069850 1368 - 0.512427
y1948 putative transport proteinchromosome CDS2149686 1203 - 0.506234
y1994 hypothetical proteinchromosome CDS2194666 1014 + 0.461538
y2078 putative transport proteinchromosome CDS2289459 1311 + 0.474447
y2108 putative transport proteinchromosome CDS2324410 1119 - 0.470063
y2112 putative chloride channelchromosome CDS2329065 1296 - 0.520062
y2116 putative solute-binding periplasmic protein of ABC transporterchromosome CDS2333428 1032 + 0.427326
y2117 putative inner membrane permease for ABC transporterchromosome CDS2334463 822 + 0.457421
y2173 hypotheticalchromosome CDS2402354 1203 + 0.500416
y2183 hypotheticalchromosome CDS2414223 1173 + 0.544757
y2241 possible chaperonechromosome CDS2469658 348 - 0.477012
y2242 possible chaperonechromosome CDS2469974 465 - 0.455914
y2272 putative permeasechromosome CDS2507857 1206 + 0.524046
y2281 putative ABC transporter periplasmic binding proteinchromosome CDS2518106 1083 + 0.510619
y2285 sulfate transporterchromosome CDS2521432 1698 + 0.519435
y2300 hypotheticalchromosome CDS2535896 453 - 0.408389
y2368 periplasmic proteinchromosome CDS2612152 414 - 0.468599
y2370 putative integral membrane proteinchromosome CDS2612883 1920 - 0.477083
y2371 putative transport proteinchromosome CDS2615383 1641 - 0.521024
y2379 putative major facilitator superfamily (MFS) transport protein (permease)chromosome CDS2626946 1278 + 0.50313
y2450 hypothetical proteinchromosome CDS2712481 1305 - 0.490421
y2451 hypothetical proteinchromosome CDS2713796 1155 - 0.467532
y2452 putative cytochromechromosome CDS2714956 858 - 0.491841
y2522 putative resistance protein, exporterchromosome CDS2784575 885 - 0.491525
y2550 hypotheticalchromosome CDS2812099 180 - 0.472222
y2592 putative inner membrane permeasechromosome CDS2855195 1341 + 0.521253
y2602 putative transport proteinchromosome CDS2865080 1401 - 0.48394
y2723 putative sulfite reductasechromosome CDS3008203 330 + 0.481818
y2837 putative ABC transport proteinchromosome CDS3139448 786 - 0.521628
y2838 hypotheticalchromosome CDS3140667 393 - 0.529262
y2839 putative inner membrane permease of iron ABC transporterchromosome CDS3140230 843 - 0.523132
y2840 hypotheticalchromosome CDS3141050 252 - 0.507937
y2842 hypotheticalchromosome CDS3141286 1137 - 0.491645
y2865 putative transport system permease proteinchromosome CDS3163780 672 - 0.508929
y2867 putative lipoproteinchromosome CDS3165431 825 - 0.476364
y2967 hypotheticalchromosome CDS3266683 1155 + 0.502164
y3004 putative inner membrane permease of ABC transporterchromosome CDS3313387 888 - 0.416667
y3005 putative inner membrane permease of ABC transporterchromosome CDS3314271 861 - 0.439024
y3006 putative solute-binding protein of ABC transporterchromosome CDS3315234 930 - 0.413978
y3050 putative transport system permease proteinchromosome CDS3358172 939 + 0.473908
y3105 putative transport system permease proteinchromosome CDS3419549 654 + 0.457187
y3106 putative lipoproteinchromosome CDS3420266 816 + 0.446078
y3180 putative resistance proteinchromosome CDS3497971 1221 - 0.528256
y3207 putative carbonic anhydrasechromosome CDS3527441 756 - 0.421958
y3215 hypotheticalchromosome CDS3539006 1554 - 0.483912
y3227 putative sulfatasechromosome CDS3552126 1608 + 0.486318
y3312 hypotheticalchromosome CDS3647926 321 - 0.47352
y3342 putative solute-binding periplasmic protein of ABC transporterchromosome CDS3681768 1110 + 0.540541
y3343 putative TonB-dependent outer membrane receptorchromosome CDS3682777 2238 + 0.527703
y3378 hypotheticalchromosome CDS3724277 1113 - 0.554358
y3404 putative OM receptorchromosome CDS3768440 2073 + 0.363724
y3421 hypotheticalchromosome CDS3792955 1347 + 0.466964
y3435 conserved hypothetical proteinchromosome CDS3821819 1380 - 0.508696
y3709 putative proline/betaine transporterchromosome CDS4125055 1389 - 0.466523
y3728 putative cation transport proteinchromosome CDS4143174 2727 + 0.49835
y3761 hypotheticalchromosome CDS4182493 234 - 0.367521
y3827 hypotheticalchromosome CDS4258500 93 + 0.419355
y3947 permease (major facilitator superfamily)chromosome CDS4402293 1185 - 0.476793
y3948 hypotheticalchromosome CDS4403963 2061 + 0.505095
y3979 hypothetical proteinchromosome CDS4435145 396 + 0.525253
y3980 hypothetical proteinchromosome CDS4435540 366 + 0.453552
y3981 hypothetical proteinchromosome CDS4435925 288 + 0.430556
y4043 putative solute-binding iron ABC transport proteinchromosome CDS4484454 990 + 0.474747
y4044 putative iron permease, ABC transporterchromosome CDS4485453 960 + 0.498958
y4045 ferric anguibactin transport system permease proteinchromosome CDS4486465 945 + 0.46455
ybtX hypotheticalchromosome CDS2648461 1404 - 0.597578
ydeF putative transport proteinchromosome CDS2925308 1182 + 0.461929
yfeA periplasmic-binding protein for iron and manganese ABC transporterchromosome CDS2094548 972 - 0.440329
yfeB ATP-binding protein for iron and manganese ABC transporterchromosome CDS2093661 891 - 0.465769
yfeC permease for iron and manganese ABC transporterchromosome CDS2092777 885 - 0.468927
yfeD permease for iron and manganese ABC transporterchromosome CDS2091887 894 - 0.467562
yfuA solute-binding periplasmic protein for iron ABC transporterchromosome CDS1687978 1020 - 0.488235
yfuB inner membrane permease of iron ABC transporterchromosome CDS1686336 1602 - 0.524969
yiuA solute-binding periplasmic protein of iron/siderophore ABC transporterchromosome CDS3174050 1170 - 0.476068
yiuB inner membrane permease of iron/siderophore ABC transporterchromosome CDS3172773 1083 - 0.515235
yiuC ATP-binding protein of iron/siderophore ABC transporterchromosome CDS3171988 789 - 0.504436
yiuR putative outer membrane iron/siderophore receptorchromosome CDS3169731 1998 - 0.460961
yjiJ putative transport proteinchromosome CDS2939144 1152 - 0.538194
ysuA putative solute-binding periplasmic protein of ABC transporterchromosome CDS2900843 1119 + 0.523682
ysuB putative permease for iron transport systemchromosome CDS2901958 1041 + 0.542747
ysuC putative inner membrane permease of ABC transporterchromosome CDS2902985 1041 + 0.545629
ysuD putative ATP-binding component for iron transport systemchromosome CDS2904022 849 + 0.485277
ysuR putative outer membrane iron/siderophore receptorchromosome CDS2898531 2262 + 0.496021
zntA zinc, lead, cadmium, and mercury transporting ATPasechromosome CDS458172 2367 - 0.526827
znuA solute-binding periplasmic protein for zinc ABC transporterchromosome CDS2479404 957 - 0.447231
znuB inner membrane permease of zinc ABC transporterchromosome CDS2481191 786 + 0.516539
znuC ATP-binding component of zinc ABC transport systemchromosome CDS2480433 762 + 0.490814