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2024-05-05 14:16:39

Gene list

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COG category: Inorganic ion transport and metabolism
Organism: Silicibacter pomeroyi DSS-3, DSS-3

Number of genes found: 217

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPO0694 hypothetical proteinchromosome CDS724858 564 - 0.62234
NA SPO1551 flavin-containing monooxygenasechromosome CDS1636630 1353 - 0.594974
NA SPO2945 rhodanese-like domain proteinchromosome CDS3144147 384 - 0.671875
NA SPO0535 K+-dependent Na+/Ca+ exchanger related-proteinchromosome CDS531470 930 - 0.660215
NA SPO1544 peptide/opine/nickel uptake family ABC transporter, permease proteinchromosome CDS1628490 1059 + 0.621341
NA SPO0798 monooxygenase domain proteinchromosome CDS831772 1317 - 0.617312
NA SPO3173 cation transport protein ChaC, putativechromosome CDS3382690 534 - 0.642322
NA SPO2477 transcriptional regulator, Fur familychromosome CDS2627656 414 - 0.642512
NA SPO1076 trkA-C domain proteinchromosome CDS1131862 1776 + 0.676239
NA SPO0465 pyridoxamine 5'-phosphate oxidase family proteinchromosome CDS473414 483 - 0.687371
NA SPO0705 oligopeptide ABC transporter, permease proteinchromosome CDS733465 1005 - 0.624876
NA SPO1948 phosphate ABC transporter, periplasmic phosphate-binding proteinchromosome CDS2076961 1041 + 0.6244
NA SPO0443 conserved hypothetical proteinchromosome CDS455724 219 + 0.570776
NA SPO0661 peptide ABC transporter, permease proteinchromosome CDS687865 978 + 0.630879
NA SPO1788 ABC transporter, periplasmic substrate-binding proteinchromosome CDS1904267 1095 + 0.617352
NA SPO1117 phosphatase, Ppx/GppA familychromosome CDS1173336 1545 - 0.67055
NA SPO1430 antibiotic efflux proteinchromosome CDS1501651 1218 + 0.697044
NA SPO0100 peptide/opine/nickel uptake family ABC transporter, permease proteinchromosome CDS102166 948 - 0.648734
NA SPO1786 ABC transporter, permease proteinchromosome CDS1902369 993 + 0.638469
NA SPO3620 sulfonate ABC transporter, periplamic sulfonate-binding proteinchromosome CDS3824109 1017 - 0.632252
NA SPO0618 transcriptional regulator, AraC familychromosome CDS636308 1047 - 0.628462
NA SPOA0368 conserved hypothetical proteinmegaplasmid CDS412340 510 - 0.586275
NA SPOA0108 membrane protein, putativemegaplasmid CDS108335 1215 + 0.606584
NA SPOA0219 NnrS, putativemegaplasmid CDS240753 1173 - 0.697357
NA SPO0099 peptide/opine/nickel uptake family ABC transporter, permease proteinchromosome CDS101354 816 - 0.669118
NA SPO3694 conserved hypothetical proteinchromosome CDS3903497 585 + 0.598291
NA SPO2552 peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding proteinchromosome CDS2702098 1866 - 0.657556
NA SPO0967 phosphate transporter family proteinchromosome CDS1018497 1479 - 0.663286
NA SPO2894 pH adaption potassium efflux system proteinchromosome CDS3095806 360 + 0.638889
NA SPO0663 peptide ABC transporter, ATP-binding proteinchromosome CDS689663 1053 + 0.660969
NA SPO3682 conserved hypothetical proteinchromosome CDS3890849 1275 + 0.59451
NA SPOA0218 magnesium transporter, CorA familymegaplasmid CDS239774 969 + 0.691434
NA SPO2832 dipeptide ABC transporter, ATP-binding proteinchromosome CDS3028673 975 - 0.645128
NA SPO0441 hypothetical proteinchromosome CDS454811 342 + 0.687135
NA SPO3058 sulfate transporter family proteinchromosome CDS3268484 1635 - 0.650765
NA SPO1424 glutathione-regulated potassium-efflux system proteinchromosome CDS1494719 1881 - 0.651249
NA SPO3775 oligopeptide/dipeptide ABC transporter, permease proteinchromosome CDS3987626 981 + 0.588175
NA SPO2445 drug resistance transporter, Bcr/CflA subfamilychromosome CDS2597933 1266 - 0.628752
NA SPO0891 alkylphosphonate utilization protein PhnM, putativechromosome CDS947359 1149 + 0.684073
NA SPO3879 membrane protein, putativechromosome CDS4094178 1275 + 0.656471
NA SPO0050 ABC transporter, periplasmic substrate-binding proteinchromosome CDS50309 1041 + 0.619597
NA SPO1387 cation efflux system proteinchromosome CDS1453606 963 + 0.657321
NA SPO2986 tellurite resistance proteinchromosome CDS3183358 1191 + 0.65911
NA SPO3715 carbonic anhydrase, putativechromosome CDS3927921 651 - 0.611367
NA SPO1522 conserved hypothetical proteinchromosome CDS1599214 588 + 0.685374
NA SPO1578 ammonium transporter family proteinchromosome CDS1670731 1374 - 0.620087
NA SPO1198 conserved hypothetical proteinchromosome CDS1251431 246 + 0.678862
NA SPO1545 peptide/opine/nickel uptake family ABC transporter, permease proteinchromosome CDS1629545 915 + 0.66776
NA SPOA0121 sulfatase family proteinmegaplasmid CDS126010 1659 + 0.590115
NA SPO1859 phosphatase, Ppx/GppA familychromosome CDS1977989 1113 - 0.667565
NA SPO1421 cation channel family proteinchromosome CDS1492040 774 + 0.622739
NA SPO2553 peptide/opine/nickel uptake family ABC transporter, permease proteinchromosome CDS2703960 948 - 0.588608
NA SPO1055 membrane protein, putativechromosome CDS1106581 435 - 0.652874
NA SPO3711 membrane protein, putativechromosome CDS3922533 1173 + 0.647059
NA SPO3639 K+-dependent Na+/Ca+ exchanger related-proteinchromosome CDS3840842 960 - 0.640625
NA SPO3293 conserved domain proteinchromosome CDS3492498 258 - 0.612403
NA SPOA0445 transcriptional regulator, Fur familymegaplasmid CDS490204 420 + 0.659524
NA SPO0559 oligopeptide ABC transporter, permease proteinchromosome CDS557329 1029 - 0.619048
NA SPO2892 conserved domain proteinchromosome CDS3092192 483 - 0.724638
NA SPO1432 rhodanese domain proteinchromosome CDS1504401 399 - 0.619048
NA SPO3735 major facilitator family proteinchromosome CDS3946774 1221 + 0.673219
NA SPO2996 peptide/nickel/opine uptake family ABC transporter, permease proteinchromosome CDS3195010 957 + 0.598746
NA SPO2864 CobGchromosome CDS3063932 1128 + 0.678191
NA SPOA0431 tetracycline resistance proteinmegaplasmid CDS478537 1200 - 0.655
NA SPO2368 Na/Pi-cotransporter family proteinchromosome CDS2512088 1608 + 0.637438
NA SPO1208 voltage-gated chloride channel family proteinchromosome CDS1262479 1746 + 0.66953
NA SPO0053 ABC transporter, permease proteinchromosome CDS52706 777 + 0.670528
NA SPO3593 sulfatase family proteinchromosome CDS3799579 1659 + 0.622061
NA SPO3048 dipeptide ABC transporter, permease proteinchromosome CDS3260757 1140 - 0.592982
NA SPO3122 membrane protein, putativechromosome CDS3331021 1233 - 0.620438
NA SPO1546 peptide/opine/nickel uptake family ABC transporter, ATP-binding proteinchromosome CDS1630456 855 + 0.637427
NA SPO3288 ferric iron ABC transporter, permease proteinchromosome CDS3486032 1698 - 0.680801
NA SPO2946 monooxygenase domain proteinchromosome CDS3144632 1488 - 0.619624
NA SPO3776 oligopeptide/dipeptide ABC transporter, permease proteinchromosome CDS3988603 945 + 0.598942
NA SPO2952 trkA domain proteinchromosome CDS3150256 1779 - 0.654862
NA SPO2833 dipeptide ABC transporter, permease proteinchromosome CDS3029644 879 - 0.638225
NA SPO3210 membrane protein, putativechromosome CDS3420199 453 + 0.671082
NA SPO2225 membrane protein, putativechromosome CDS2366199 1263 - 0.627078
NA SPO1396 transporter, putativechromosome CDS1462852 1278 - 0.696401
NA SPO1658 oligopeptide/dipeptide ABC transporter, permease proteinchromosome CDS1765332 1047 - 0.599809
NA SPO2383 membrane protein, putativechromosome CDS2527016 489 + 0.611452
NA SPO2816 peptide/nickel/opine uptake family ABC transporter, permease proteinchromosome CDS3008040 930 + 0.65914
NA SPO1590 Rieske 2Fe-2S domain proteinchromosome CDS1683694 1092 - 0.627289
NA SPO2016 hypothetical proteinchromosome CDS2144312 486 - 0.652263
NA SPOA0152 di-haem cytochrome c peroxidase family proteinmegaplasmid CDS163457 1077 + 0.645311
NA SPO3678 Rieske 2Fe-2S domain proteinchromosome CDS3887290 1110 - 0.581081
NA SPO2128 transporter, putativechromosome CDS2260247 1218 + 0.665025
NA SPO0858 methylamine utilization protein MauG, putativechromosome CDS908621 1299 + 0.678984
NA SPO0703 oligopeptide ABC transporter, ATP-binding proteinchromosome CDS731344 996 - 0.649598
NA SPO0424 membrane proteinchromosome CDS437751 1188 + 0.649832
NA SPO2219 rhodanese-like domain proteinchromosome CDS2360617 360 + 0.713889
NA SPO0604 conserved hypothetical proteinchromosome CDS623376 378 - 0.579365
NA SPO1657 oligopeptide/dipeptide ABC transporter, permease proteinchromosome CDS1764115 1203 - 0.630091
NA SPO3481 membrane protein, putativechromosome CDS3686010 1203 - 0.66916
NA SPO3619 sulfonate ABC transporter, ATP-binding proteinchromosome CDS3823335 768 - 0.671875
NA SPO3618 sulfonate ABC transporter, permease protein, putativechromosome CDS3822554 789 - 0.653992
NA SPOA0132 aromatic 1,2-dioxygenase, alpha subunitmegaplasmid CDS142410 1341 - 0.586875
NA SPO2815 peptide/nickel/opine uptake family ABC transporter, permease proteinchromosome CDS3007058 1008 + 0.599206
NA SPO0800 choline sulfatase, putativechromosome CDS833887 1449 - 0.660455
NA SPO3364 zinc/manganese/iron ABC transporter, permease proteinchromosome CDS3564230 1206 - 0.686567
NA SPO1451 aromatic 1,2-dioxygenase, alpha subunitchromosome CDS1522595 1326 - 0.617647
NA SPOA0211 Na/Pi-cotransporter family proteinmegaplasmid CDS232257 1683 - 0.647653
NA SPOA0369 copper resistance protein B, putativemegaplasmid CDS412958 663 - 0.627451
NA SPO1134 NnrU family proteinchromosome CDS1189756 669 + 0.715994
NA SPO1645 oligopeptide/dipeptide ABC transporter, permease proteinchromosome CDS1749467 876 - 0.627854
NA SPO3719 thiosulfate sulfurtransferase, putativechromosome CDS3931367 855 + 0.639766
NA SPO2834 dipeptide ABC trasnporter, permease proteinchromosome CDS3030533 945 - 0.637037
NA SPO3287 ferric iron ABC transporter, periplasmic ferric iron-binding proteinchromosome CDS3484905 1050 + 0.633333
NA SPO3520 copper-translocating P-type ATPasechromosome CDS3727668 2178 - 0.689624
NA SPO1308 conserved hypothetical proteinchromosome CDS1372597 753 - 0.695883
NA SPO0704 oligopeptide ABC transporter, permease proteinchromosome CDS732336 1125 - 0.611556
NA SPO1779 membrane protein, major facilitator transporter familychromosome CDS1895936 1281 + 0.651834
NA SPO1211 oligopeptide ABC transporter, permease proteinchromosome CDS1267642 942 + 0.623142
NA SPO0189 conserved hypothetical proteinchromosome CDS206225 1026 + 0.643275
NA SPO1276 ArsC family proteinchromosome CDS1342577 318 + 0.660377
NA SPO1093 drug resistance transporter, Bcr/CflA familychromosome CDS1147941 1206 - 0.661692
NA SPO0789 conserved hypothetical proteinchromosome CDS821481 168 + 0.642857
NA SPOA0148 membrane protein, major facilitator transporter familymegaplasmid CDS159056 1158 - 0.684801
NA SPO3681 Rieske 2Fe-2S domain proteinchromosome CDS3889522 1143 - 0.572178
NA SPO2971 membrane protein, putativechromosome CDS3167743 1152 - 0.666667
NA SPO1554 ammonium transporter family proteinchromosome CDS1640347 1716 - 0.610723
NA SPO3493 transporter, putativechromosome CDS3697729 1158 + 0.632988
NA SPO0086 lipoprotein, putativechromosome CDS84326 1263 + 0.65479
NA SPO1547 peptide/opine/nickel uptake family ABC transporter, ATP-binding proteinchromosome CDS1631307 765 + 0.654902
NA SPO2079 Na(+)/H(+) antiporter, homologchromosome CDS2214924 1185 + 0.700422
NA SPO0662 peptide ABC transporter, permease proteinchromosome CDS688839 888 + 0.646396
NA SPO2071 drug resistance transporter, Bcr/CflA subfamilychromosome CDS2202805 1209 + 0.656741
NA SPO0466 transporter, formate/nitrate familychromosome CDS473906 780 - 0.673077
NA SPOA0365 copper-translocating P-type ATPasemegaplasmid CDS407279 2358 + 0.680237
NA SPO3363 zinc/manganese/iron ABC transporter, permease proteinchromosome CDS3563304 930 - 0.666667
NA SPO0260 alkaline phosphatase, putativechromosome CDS277569 1569 + 0.634162
NA SPOA0181 transporter, FNT familymegaplasmid CDS194918 819 - 0.59707
NA SPO3820 transmembrane transporter, major facilitator familychromosome CDS4037027 1236 + 0.642395
NA SPO1630 membrane protein, putativechromosome CDS1732715 1632 - 0.65625
NA SPO1787 ABC transporter, permease proteinchromosome CDS1903423 879 + 0.646189
NA SPO2634 sulfite reductase, putativechromosome CDS2787532 1665 + 0.641441
NA SPOA0039 conserved hypothetical proteinmegaplasmid CDS34623 1920 + 0.645833
NA SPO1908 chromate transporterchromosome CDS2030354 1371 - 0.681984
NA SPO3505 membrane protein, putativechromosome CDS3709396 1209 - 0.680728
NA SPO0052 ABC transporter, ATP-binding proteinchromosome CDS51960 792 + 0.695707
NA SPO0209 Na/Pi-cotransporter family proteinchromosome CDS228804 1695 + 0.663127
NA SPO3047 dipeptide ABC transporter, permease proteinchromosome CDS3259539 1206 - 0.595357
NA SPO0030 voltage-gated sodium channelchromosome CDS30727 777 + 0.610039
NA SPO2997 peptide/nickel/opine uptake family ABC transporter, permease proteinchromosome CDS3195963 816 + 0.634804
NA SPO1792 DNA-binding protein, excisionase familychromosome CDS1907919 873 - 0.715922
NA SPO2204 conserved hypothetical proteinchromosome CDS2343235 501 - 0.636727
NA SPO1646 oligopeptide/dipeptide ABC transporter, permease proteinchromosome CDS1750339 948 - 0.631857
NA SPO0794 copper-translocating P-type ATPasechromosome CDS826633 2487 - 0.705669
NA SPO3777 oligopeptide/dipeptide ABC transporter, ATP-binding proteinchromosome CDS3989516 1029 + 0.630709
NA SPO0558 oligopeptide ABC transporter, permease proteinchromosome CDS556181 1152 - 0.637153
NA SPO2030 multidrug resistance efflux protein, SMR familychromosome CDS2156239 336 + 0.630952
NA SPO1785 ABC transporter, ATP-binding proteinchromosome CDS1901532 804 + 0.626866
NA SPO1212 oligopeptide ABC transporter, permease proteinchromosome CDS1268583 903 + 0.647841
NA SPO1631 CBS domain proteinchromosome CDS1734343 1308 - 0.649083
NA SPO0055 OmpA domain proteinchromosome CDS54337 1557 - 0.664098
NA SPOA0271 methylamine utilization protein MauG, putativemegaplasmid CDS297379 1215 + 0.674897
NA SPO2179 conserved hypothetical proteinchromosome CDS2315271 435 - 0.627586
NA SPO1404 membrane protein, putativechromosome CDS1474041 1227 - 0.669927
NA SPO3345 hypothetical proteinchromosome CDS3545997 426 - 0.65493
NA SPO3365 zinc/manganese/iron ABC transporter, ATP-binding proteinchromosome CDS3565440 804 - 0.661692
NA SPO3366 zinc/manganese/iron ABC transporter, periplasmic zinc/manganese/iron-binding proteinchromosome CDS3566247 954 - 0.65304
amt-1 SPO2093 ammonium transporterchromosome CDS2230811 1296 + 0.643519
amt-2 SPO3723 ammonium transporterchromosome CDS3934721 1329 - 0.619263
arsC-1 SPO2908 arsenate reductasechromosome CDS3108996 345 + 0.678261
atsA SPO3286 arylsulfatasechromosome CDS3483233 1608 + 0.644279
betC-1 SPO1083 choline sulfatasechromosome CDS1138107 1509 + 0.632869
betC-2 SPO2214 choline sulfatasechromosome CDS2353972 1497 - 0.640615
boxA SPO3703 benzoyl-CoA oxygenase, A subunitchromosome CDS3914075 1119 + 0.645219
ccoS SPO3519 cytochrome oxidase maturation protein, cbb3-typechromosome CDS3727505 159 - 0.616352
ccpA SPO0330 cytochrome c peroxidasechromosome CDS340918 1050 + 0.644762
cysQ SPO0039 3'(2'),5'-bisphosphate nucleotidasechromosome CDS39567 798 - 0.635338
katG SPOA0061 catalase/peroxidase HPImegaplasmid CDS57490 2196 - 0.656648
mdoG SPO2889 periplasmic glucan biosynthesis protein MdoGchromosome CDS3088002 1500 + 0.672667
mgtE SPO2955 magnesium transporterchromosome CDS3153702 1392 - 0.643678
modA SPO0699 molybdate ABC transporter, periplasmic molybdate-binding proteinchromosome CDS727917 765 - 0.691503
modB SPO0698 molybdate ABC transporter, permease proteinchromosome CDS727221 693 - 0.705628
modC SPO0697 molybdate ABC transporter, ATP-binding proteinchromosome CDS726145 1080 - 0.709259
norB SPOA0216 nitric oxide reductase, large subunitmegaplasmid CDS237713 1368 - 0.602339
norD SPOA0214 nitric oxide reductase D proteinmegaplasmid CDS234967 1923 - 0.682787
nosD SPOA0051 nitrous oxide maturation protein NosDmegaplasmid CDS47002 1257 + 0.62848
nuoL SPO2765 NADH dehydrogenase I, L subunitchromosome CDS2956206 2145 - 0.629371
phaA SPO2893 pH adaption potassium efflux system protein PhaAchromosome CDS3092895 2910 + 0.632302
phaD SPO2895 pH adaption potassium efflux system protein PhaDchromosome CDS3096162 1548 + 0.650517
phaE SPO2896 pH adaption potassium efflux system protein PhaEchromosome CDS3097706 498 + 0.630522
phaF SPO2897 pH adaptation potassium efflux system protein PhaFchromosome CDS3098200 273 + 0.575092
phaG SPO2898 pH adaption potassium efflux system protein PhaGchromosome CDS3098480 387 + 0.622739
phnA SPO2122 alkylphosphonate utilization operon protein PhnAchromosome CDS2256609 336 + 0.616071
phnE SPO0783 phosphonate ABC transporter, permease proteinchromosome CDS816045 1371 + 0.652808
phnG SPO0468 alkylphosphonate utilization protein PhnGchromosome CDS475557 456 + 0.708333
phnH SPO0469 alkylphosphonate utilization protein PhnHchromosome CDS476009 579 + 0.671848
phnI SPO0470 alkylphosphonate utilization protein PhnIchromosome CDS476591 1092 + 0.656593
phnJ SPO0471 alkylphosphonate utilization protein PhnJchromosome CDS477762 837 + 0.633214
phnK SPO0472 alkylphosphonate utilization protein PhnKchromosome CDS478684 771 + 0.645914
phnL SPO0473 alkylphosphonate utilization protein PhnLchromosome CDS479522 684 + 0.673977
phnM SPO0476 alkylphosphonate utilization protein PhnMchromosome CDS481469 1143 + 0.664042
phnN SPO0474 alkylphosphonate utilization protein PhnNchromosome CDS480202 549 + 0.695811
phoC SPO0780 phosphonate ABC transporter, ATP-binding proteinchromosome CDS813316 822 + 0.666667
phoD SPO0781 phosphonate ABC transporter, periplasmic phosphonate-binding proteinchromosome CDS814166 936 + 0.623932
phoE SPO0782 phosphonate ABC transporter, permease proteinchromosome CDS815167 882 + 0.6678
phoU SPO1952 phosphate transport system regulatory protein PhoUchromosome CDS2081732 702 + 0.648148
pstA SPO1950 phosphate ABC transporter, permease proteinchromosome CDS2079551 1353 + 0.645233
pstB SPO1951 phosphate ABC transporter, ATP-binding proteinchromosome CDS2080887 828 + 0.630435
pstC SPO1949 phosphate ABC transporter, permease proteinchromosome CDS2078079 1476 + 0.668022
sat SPO0900 sulfate adenylyltransferasechromosome CDS954455 1710 - 0.630994
sodB SPO2340 superoxide dismutase, Fechromosome CDS2480854 600 - 0.578333
sulP SPO1956 sulfate permeasechromosome CDS2085537 1749 + 0.639222
tauA SPO0674 taurine ABC transporter, periplasmic taurine-binding proteinchromosome CDS703493 1011 + 0.647873
tauB SPO0675 taurine ABC transporter, ATP-binding proteinchromosome CDS704612 807 + 0.604709
tauC SPO0676 taurine ABC transporter, permease proteinchromosome CDS705817 873 + 0.636884
trgA SPO1919 tellurite resistance proteinchromosome CDS2040718 441 + 0.630385
trkA SPO2083 Trk system potassium uptake protein TrkAchromosome CDS2219276 1377 - 0.642702
trkH-1 SPO1353 Trk system potassium uptake protein TrkHchromosome CDS1413474 1449 + 0.628709
trkH-2 SPO2082 Trk system potassium uptake protein TrkHchromosome CDS2217741 1536 - 0.669271
znuA SPO0987 zinc ABC transporter, periplasmic zinc-binding proteinchromosome CDS1041090 969 + 0.668731
znuB SPO0984 zinc ABC transporter, permease proteinchromosome CDS1038962 798 - 0.720551
znuC SPO0985 zinc ABC transporter, ATP-binding proteinchromosome CDS1039756 771 - 0.696498
zur SPO0986 zinc uptake regulation proteinchromosome CDS1040523 480 - 0.672917