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2024-05-27 12:40:07

Gene list

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COG category: Posttranslational modification, protein turnover, chaperones
Genomic element: chromosome

Number of genes found: 136

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Yersinia pestis biovar Medievalis str. 91001, 91001
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YP3488 conserved hypothetical proteinchromosome CDS3967127 273 - 0.413919
NA YP2188 Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufBchromosome CDS2434134 1326 - 0.497738
NA YP0842 putative thioredoxinchromosome CDS914404 870 - 0.508046
NA YP1915 Inactive homologs of metal-dependent proteases, putative molecular chaperoneschromosome CDS2134239 753 + 0.544489
NA YP2947 Predicted protein-disulfide isomerasechromosome CDS3282752 603 - 0.487562
NA YP2189 putative ATP-dependent transporterchromosome CDS2435434 774 - 0.459948
NA YP2169 Glutaredoxin-related proteinschromosome CDS2414422 366 - 0.459016
NA YP2190 Predicted membrane components of an uncharacterized iron-regulated ABC-type transporter SufBchromosome CDS2436366 1512 - 0.494048
NA YP2158 conserved hypothetical proteinchromosome CDS2400906 1155 - 0.51342
NA YP0840 putative membrane proteinchromosome CDS912843 450 - 0.502222
NA YP0128 Thioredoxin-like proteins and domainschromosome CDS139634 576 - 0.46875
NA YP1958 Conserved domain frequently associated with peptide methionine sulfoxide reductasechromosome CDS2177561 471 + 0.443737
NA YP0131 putative exported proteinchromosome CDS141994 279 + 0.437276
NA YP0603 Collagenase and related proteaseschromosome CDS647026 900 - 0.506667
NA YP3146 putative magnesium chelatase family proteinchromosome CDS3513683 1524 - 0.534121
NA YP0175 Predicted redox protein, regulator of disulfide bond formationchromosome CDS194825 408 + 0.490196
NA YP0604 putative proteasechromosome CDS647916 996 - 0.5251
NA YP2856 Predicted protein-disulfide isomerasechromosome CDS3168761 636 - 0.47956
NA YP2721 putative proteasechromosome CDS3021913 1395 + 0.496057
NA YP3171 putative exported proteinchromosome CDS3539104 792 - 0.340909
aHP1 YP3132 putative peroxiredoxin/glutaredoxin family proteinchromosome CDS3491829 732 - 0.463115
aat1 YP1222 putative leucyl/phenylalanyl-tRNA-protein transferasechromosome CDS1336152 735 + 0.491156
ahpC YP0737 putative alkyl hydroperoxide reductase subunit cchromosome CDS798919 603 - 0.472637
bcp YP2686 bacterioferritin comigratory proteinchromosome CDS2976976 474 + 0.443038
btuE YP2211 putative vitamin B12 transport proteinchromosome CDS2461655 555 - 0.445045
ccmA3 YP2430 putative heme exporter protein Achromosome CDS2699366 657 - 0.494673
ccmB YP2429 heme exporter protein Bchromosome CDS2698737 687 - 0.519651
ccmC2 YP2428 putative heme exporter protein Cchromosome CDS2697937 738 - 0.501355
ccmE YP2426 putative cytochrome c-type biogenesis proteinchromosome CDS2697147 495 - 0.511111
ccmF YP2425 putative cytochrome c-type biogenesis proteinchromosome CDS2695180 1971 - 0.524099
ccmG YP2424 thiol:disulfide interchange protein DsbEchromosome CDS2694617 567 - 0.499118
ccmH YP2423 putative cytochrome c-type biogenesis proteinchromosome CDS2694108 513 - 0.465887
clpA1 YP1225 ATP-dependent Clp protease ATP-binding subunitchromosome CDS1338378 2283 - 0.494963
clpA2 YP1362 putative ATPase subunit of ATP-dependent proteasechromosome CDS1492058 2643 + 0.592508
clpA3 YP2573 putative Clp ATPasechromosome CDS2848518 2751 - 0.475463
clpB1 YP0656 Clp ATPasechromosome CDS701023 2595 + 0.478613
clpB2 YP3673 putative Clp ATPasechromosome CDS4183297 2604 - 0.534562
clpB3 YP3467 Clp ATPasechromosome CDS3939616 2649 + 0.585504
clpB4 YP3951 Clp ATPasechromosome CDS4496625 2604 - 0.53149
clpP YP0774 ATP-dependent Clp protease proteolytic subunit ClpPchromosome CDS834343 624 + 0.461538
clpX YP0775 ATP-dependent Clp protease ATP-binding subunit ClpXchromosome CDS835172 1272 + 0.481132
cydC YP1221 transport ATP-binding proteinchromosome CDS1334233 1725 + 0.516522
cydD YP1220 transport ATP-binding proteinchromosome CDS1332446 1785 + 0.505882
cyoE YP0763 protoheme IX farnesyltransferasechromosome CDS823099 909 - 0.464246
cysT YP2638 sulfate transport system permease protein CysTchromosome CDS2926515 834 - 0.53717
degQ YP3821 proteasechromosome CDS4350316 1374 + 0.487627
degS YP3823 proteasechromosome CDS4352490 1089 + 0.481175
djlA YP3683 DnaJ-like proteinchromosome CDS4196263 834 - 0.5
dnaJ2 YP3711 chaperone protein DnaJchromosome CDS4224539 1140 - 0.499123
dnaK1 YP2707 putative heat shock proteinchromosome CDS3000286 1356 + 0.54351
dnaK2 YP3712 chaperone protein DnaKchromosome CDS4225790 1911 - 0.480377
dsbA YP0017 secreted thiol:disulfide interchange protein DsbAchromosome CDS21601 624 + 0.421474
dsbB YP1944 disulfide bond formation protein Bchromosome CDS2158921 579 - 0.455959
dsbC YP3587 thiol:disulfide interchange protein (DsbC)chromosome CDS4081229 717 - 0.456067
dsbD YP0499 thiol:disulfide interchange proteinchromosome CDS535824 1788 - 0.521812
fdhE YP3967 putative formate dehydrogenase formation proteinchromosome CDS4514163 930 - 0.495699
fklB YP0551 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS588252 621 + 0.520129
fkpA YP0194 peptidyl-prolyl cis-trans isomerasechromosome CDS210938 840 + 0.458333
flgA YP1595 flagella basal body P-ring formation protein FlgAchromosome CDS1744830 765 + 0.517647
flgJ1 YP1586 flagellar protein FlgJchromosome CDS1737423 945 - 0.540741
flgJ2 YP3042 flagellar protein FlgJchromosome CDS3379919 294 + 0.503401
flgN1 YP1597 flagella synthesis protein FlgNchromosome CDS1746063 444 + 0.488739
fliJ YP1566 flagellar protein FliJchromosome CDS1717259 447 + 0.478747
fliS1 YP1553 flagellar protein FliSchromosome CDS1704347 399 + 0.466165
fliS2 YP3050 flagellar protein FliSchromosome CDS3388666 381 + 0.388451
fliT YP1554 repressor of class 3a and 3b operons (RflA activity)chromosome CDS1704705 414 + 0.425121
ftsH YP0581 cell division proteinchromosome CDS619575 1944 + 0.46965
gcp YP2961 putative glycoproteasechromosome CDS3295907 1014 + 0.518738
glnD YP2809 [protein-PII] uridylyltransferasechromosome CDS3118948 2739 + 0.49215
glnE YP2968 adenylylating enzyme for glutamine synthetasechromosome CDS3303258 2883 + 0.527229
groEL YP0506 60 kDa chaperoninchromosome CDS542609 1647 + 0.504554
groES YP0505 10 kDa chaperoninchromosome CDS542269 294 + 0.489796
grpE YP1049 heat shock protein GrpEchromosome CDS1131639 579 - 0.474957
grxA YP1265 glutaredoxin 1chromosome CDS1379730 264 + 0.439394
grxC YP0066 glutaredoxinchromosome CDS77202 249 + 0.514056
gsrA YP0303 global stress requirement protein GsrAchromosome CDS315425 1446 + 0.498617
gst1 YP1278 putative glutathione S-transferase-family proteinchromosome CDS1395138 675 + 0.484444
gst2 YP2153 glutathione S-transferasechromosome CDS2396651 609 + 0.456486
gst3 YP3908 putative glutathione S-transferasechromosome CDS4443633 855 + 0.495906
hflC1 YP0532 putative membrane proteinchromosome CDS571454 1005 + 0.502488
hflC2 YP0841 Membrane protease subunits, stomatin/prohibitin homologschromosome CDS913295 915 - 0.469945
hflC3 YP1254 putative SPFH domain proteinchromosome CDS1369115 927 - 0.399137
hflK YP0531 putative membrane proteinchromosome CDS570191 1260 + 0.503175
hmwC YP0686 putative accessory processing proteinchromosome CDS743601 1854 + 0.452535
hscA YP2563 chaperone protein HscAchromosome CDS2835801 1938 + 0.546956
hscB YP2562 chaperone protein HscBchromosome CDS2835058 501 + 0.51497
hslJ YP2116 putative heat shock proteinchromosome CDS2359574 453 + 0.437086
hslO YP0140 heat-shock chaperoninchromosome CDS153440 882 - 0.492063
hslU YP0107 ATP-binding heat shock proteinchromosome CDS113946 1332 - 0.487988
hslV YP0108 heat shock proteinchromosome CDS115348 525 - 0.487619
htpG YP0811 heat shock protein HtpGchromosome CDS875833 1875 + 0.463467
htpX1 YP1731 putative heat shock proteinchromosome CDS1915338 882 + 0.470522
htpX3 YP3515 Zn-dependent protease with chaperone functionchromosome CDS4001021 780 - 0.489744
htpX4 YP3783 M48 peptidase family proteinchromosome CDS4309165 1047 + 0.526266
ibpA YP3994 heat shock proteinchromosome CDS4547741 414 - 0.425121
ibpB YP3993 heat shock proteinchromosome CDS4546996 507 - 0.481262
lfgA YP3033 putative flagellar proteinchromosome CDS3372701 918 - 0.486928
lon YP0776 ATP-dependent protease Lachromosome CDS836584 2409 + 0.479867
lonB YP0876 putative Lon proteasechromosome CDS940148 1752 - 0.514269
mdlB2 YP1127 putative ABC transport proteinchromosome CDS1206298 1896 - 0.464135
msrA YP0558 peptide methionine sulfoxide reductasechromosome CDS595765 639 - 0.532081
mutL2 YP3789 DNA mismatch repair enzyme (predicted ATPase)chromosome CDS4315336 723 - 0.305671
nrdG1 YP0312 Organic radical activating enzymeschromosome CDS327822 672 + 0.491071
nrdG2 YP0630 anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS670022 435 - 0.51954
nrdH YP2453 putative glutaredoxinchromosome CDS2727165 237 - 0.447257
nrfG2 YP2422 putative cytochrome c-type biogenesis proteinchromosome CDS2692882 1227 - 0.495518
pcm YP0330 protein-L-isoaspartate O-methyltransferasechromosome CDS344188 627 + 0.496013
pcp1 YP2507 putative pyrrolidone-carboxylate peptidasechromosome CDS2778370 648 + 0.498457
pflA YP1212 pyruvate formate lyase activating enzyme 1chromosome CDS1319707 798 + 0.463659
ppiA YP0169 peptidyl-prolyl cis-trans isomerase Achromosome CDS186791 600 + 0.453333
ppiB YP0851 peptidyl-prolyl cis-trans isomerase Bchromosome CDS922889 495 - 0.466667
ppiC YP3172 peptidyl-prolyl cis-trans isomerase Cchromosome CDS3540134 297 - 0.447811
ppiD YP0778 peptidyl-prolyl cis-trans isomerase Dchromosome CDS839783 1887 + 0.45469
pppA1 YP2850 putative type IV prepilin peptidasechromosome CDS3162945 915 + 0.357377
pppA2 YP3009 putative membrane proteinchromosome CDS3348229 423 - 0.385343
ptrA YP2882 protease III precursorchromosome CDS3197098 2889 + 0.467636
radA YP3739 DNA repair protein RadAchromosome CDS4259856 1383 - 0.544469
sirA1 YP0430 Predicted redox protein, regulator of disulfide bond formationchromosome CDS454785 270 + 0.548148
sirA2 YP3227 Predicted redox protein, regulator of disulfide bond formationchromosome CDS3601560 396 + 0.467172
slpA2 YP3703 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerasechromosome CDS4216453 534 - 0.47191
slyD YP0191 peptidyl-prolyl cis-trans isomerasechromosome CDS209609 615 + 0.521951
smc3 YP3906 Chromosome segregation ATPaseschromosome CDS4440754 1176 + 0.460884
smpB YP1055 small protein Bchromosome CDS1136435 495 + 0.458586
sohB YP2013 peptidase family U7 proteinchromosome CDS2235047 1047 + 0.483286
sppA YP1962 protease IVchromosome CDS2180303 1851 - 0.480821
sspA YP3815 putative stringent starvation protein Achromosome CDS4346126 642 - 0.487539
surA YP3685 survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase)chromosome CDS4199691 1305 + 0.485824
tig YP0773 Trigger factorchromosome CDS832577 1305 + 0.47433
tpx YP2129 thiol peroxidasechromosome CDS2374886 576 + 0.473958
trxA1 YP1691 putative thioredoxin-family proteinchromosome CDS1866240 531 + 0.468927
trxA2 YP3177 thioredoxin 1chromosome CDS3545676 327 + 0.461774
trxB YP1219 thioredoxin reductasechromosome CDS1331043 963 + 0.515057
trxC YP0661 thioredoxin 2chromosome CDS715258 438 - 0.502283
ureE YP2469 urease accessory proteinchromosome CDS2741883 705 + 0.49078
ureF YP2470 urease accessory proteinchromosome CDS2742609 687 + 0.490539
ureG YP2471 urease accessory proteinchromosome CDS2743422 663 + 0.484163