TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-26 01:52:36

Gene list

Applied filters:

COG category: Posttranslational modification, protein turnover, chaperones
Genomic element: chromosome

Number of genes found: 199

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
SO0012 glutathione S-transferase family proteinchromosome CDS13129 663 - 0.463047
SO0019 conserved hypothetical proteinchromosome CDS22815 246 - 0.463415
SO0109 conserved hypothetical proteinchromosome CDS119961 234 + 0.461538
SO0110 conserved hypothetical proteinchromosome CDS120287 1344 - 0.49628
SO0179 conserved hypothetical proteinchromosome CDS183749 579 + 0.464594
SO0187 serine protease, subtilase familychromosome CDS190156 1224 + 0.428105
SO0265 conserved hypothetical proteinchromosome CDS264025 1248 - 0.444712
SO0269 thioredoxin, putativechromosome CDS268689 585 + 0.449573
SO0349 magnesium chelatase family proteinchromosome CDS355703 1527 - 0.526523
SO0409 hypothetical proteinchromosome CDS426070 537 - 0.450652
SO0429 peptidase, M13 familychromosome CDS451966 2043 + 0.469897
SO0445 hflC protein, putativechromosome CDS473830 891 - 0.492705
SO0476 thioredoxin, putativechromosome CDS499024 585 - 0.441026
SO0481 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS505400 780 + 0.448718
SO0491 peptidase, M13 familychromosome CDS514492 2136 + 0.543071
SO0536 redox-active disulfide protein 2chromosome CDS556878 237 + 0.438819
SO0644 prophage MuSo1, DNA transposition protein, putativechromosome CDS672706 720 + 0.484722
SO0679 hypothetical proteinchromosome CDS695755 747 + 0.523427
SO0732 conserved hypothetical proteinchromosome CDS747682 243 - 0.502058
SO0746 glutathione S-transferase family proteinchromosome CDS763935 597 - 0.457286
SO0754 ABC transporter, ATP-binding proteinchromosome CDS769396 1791 - 0.458961
SO0797 hypothetical proteinchromosome CDS810026 462 - 0.491342
SO0835 conserved hypothetical proteinchromosome CDS852994 1158 - 0.506045
SO0923 conserved hypothetical proteinchromosome CDS953269 417 - 0.455635
SO0939 cytochrome c, putativechromosome CDS969959 825 - 0.48
SO0975 hypothetical proteinchromosome CDS1005492 1425 - 0.459649
SO1137 conserved hypothetical proteinchromosome CDS1178905 810 + 0.520988
SO1248 conserved hypothetical proteinchromosome CDS1298746 870 - 0.487356
SO1249 peptidase, U32 familychromosome CDS1299649 1002 - 0.516966
SO1252 peptidase, U32 familychromosome CDS1301678 1368 - 0.49269
SO1313 conserved hypothetical proteinchromosome CDS1368546 1110 - 0.499099
SO1381 conserved hypothetical proteinchromosome CDS1437461 648 - 0.438272
SO1390 peptidyl-prolyl cis-trans isomerase, FKBP-typechromosome CDS1447588 471 - 0.450106
SO1413 tetraheme cytochrome c, putativechromosome CDS1469820 372 - 0.5
SO1463 hypothetical proteinchromosome CDS1525439 4521 + 0.426454
SO1492 peptidyl-prolyl cis-trans isomerase, cyclophilin familychromosome CDS1556808 633 - 0.481833
SO1563 glutathione peroxidase, putativechromosome CDS1641586 489 - 0.431493
SO1576 glutathione S-transferase family proteinchromosome CDS1653520 669 - 0.455904
SO1577 glutathione S-transferase family proteinchromosome CDS1654251 627 - 0.443381
SO1612 hypothetical proteinchromosome CDS1695521 399 + 0.45614
SO1671 glutathione S-transferase family proteinchromosome CDS1757908 651 + 0.499232
SO1824 conserved hypothetical proteinchromosome CDS1917616 666 + 0.423423
SO1850 DnaJ domain proteinchromosome CDS1938826 285 - 0.42807
SO1852 conserved hypothetical proteinchromosome CDS1942994 246 + 0.47561
SO1857 conserved hypothetical proteinchromosome CDS1948086 1734 - 0.446943
SO1915 serine protease, subtilase familychromosome CDS2012448 3903 + 0.456572
SO1949 invasin domain proteinchromosome CDS2052016 3714 + 0.405762
SO1995 peptidyl-prolyl cis-trans isomerase, FkbP familychromosome CDS2095496 489 + 0.492843
SO2017 conserved hypothetical proteinchromosome CDS2116457 864 + 0.482639
SO2100 thioredoxin family proteinchromosome CDS2198354 468 + 0.440171
SO2133 hypothetical proteinchromosome CDS2239134 1665 + 0.318318
SO2189 conserved hypothetical proteinchromosome CDS2300036 1455 + 0.504467
SO2288 glutathione-S-transferase domain proteinchromosome CDS2402806 519 - 0.466281
SO2408 radical activating enzymechromosome CDS2512625 861 + 0.469222
SO2501 radical activating enzymechromosome CDS2627105 669 - 0.470852
SO2586 conserved hypothetical proteinchromosome CDS2712730 711 - 0.485232
SO2588 protein-methionine-S-oxide reductase, PilB familychromosome CDS2715508 906 - 0.488962
SO2624 conserved hypothetical proteinchromosome CDS2760160 717 + 0.451883
SO2727 cytochrome c3chromosome CDS2843969 351 - 0.48433
SO2745 glutaredoxinchromosome CDS2865898 261 + 0.417625
SO2797 conserved hypothetical proteinchromosome CDS2920568 357 + 0.434174
SO2829 conserved domain proteinchromosome CDS2947497 450 + 0.444444
SO2860 thiol:disulfide interchange protein, DsbA familychromosome CDS2984462 624 - 0.453526
SO2868 conserved hypothetical proteinchromosome CDS2991272 234 - 0.423077
SO2880 glutaredoxin domain proteinchromosome CDS3000912 333 - 0.408408
SO2933 sohB protein, peptidase U7 familychromosome CDS3067935 1029 - 0.446064
SO2964 ClpP protease family proteinchromosome CDS3097955 855 - 0.494737
SO2979 hypothetical proteinchromosome CDS3107999 603 - 0.485904
SO2980 hypothetical proteinchromosome CDS3108598 567 - 0.495591
SO3051 conserved hypothetical proteinchromosome CDS3163234 1014 - 0.49211
SO3056 tetraheme cytochrome cchromosome CDS3168892 384 - 0.4375
SO3083 peptidase, M16 familychromosome CDS3201961 2790 + 0.426165
SO3117 thioredoxin, putativechromosome CDS3245211 555 + 0.482883
SO3253 flagellar basal-body P-ring formation protein FlgA, putativechromosome CDS3390904 708 + 0.408192
SO3258 conserved hypothetical proteinchromosome CDS3393912 1176 + 0.443878
SO3300 cytochrome cchromosome CDS3445506 381 - 0.362205
SO3302 serine protease, subtilase familychromosome CDS3448058 3864 - 0.429607
SO3325 nrfJ-related proteinchromosome CDS3476044 303 - 0.425743
SO3341 antioxidant, AhpC/TSA familychromosome CDS3488537 594 + 0.429293
SO3349 glutathione peroxidase, putativechromosome CDS3494165 534 - 0.419476
SO3369 conserved hypothetical proteinchromosome CDS3511763 279 + 0.379928
SO3391 ATP-dependent protease, putativechromosome CDS3530959 2421 + 0.451466
SO3409 OsmC/Ohr family proteinchromosome CDS3546820 438 + 0.442922
SO3475 conserved hypothetical proteinchromosome CDS3621402 666 + 0.498498
SO3495 conserved hypothetical proteinchromosome CDS3645442 429 - 0.475524
SO3563 SM-20 domain proteinchromosome CDS3723892 624 - 0.440705
SO3611 ATPase, AAA familychromosome CDS3772222 1488 - 0.491935
SO3623 tetraheme cytochrome cchromosome CDS3783261 351 - 0.42735
SO3633 DnaJ domain proteinchromosome CDS3791047 789 - 0.489227
SO3659 thiol:disulfide interchange protein, putativechromosome CDS3811849 546 + 0.474359
SO3686 curli production assembly/transport component CsgF, putativechromosome CDS3836301 396 - 0.464646
SO3716 DnaJ domain proteinchromosome CDS3863770 645 + 0.444961
SO3718 thiol:disulfide interchange protein, DsbA familychromosome CDS3864666 753 + 0.450199
SO3797 peptidase, U32 familychromosome CDS3948765 1917 - 0.467397
SO3844 peptidase, M13 familychromosome CDS3993100 2085 + 0.478177
SO3870 disulfide bond formation proteinchromosome CDS4016377 639 - 0.399061
SO3871 thiol:disulfide interchange protein, DsbA familychromosome CDS4017027 612 - 0.359477
SO3885 ATPase, AAA familychromosome CDS4031563 2043 + 0.496818
SO3918 conserved hypothetical proteinchromosome CDS4064970 2199 + 0.466576
SO3942 serine protease, HtrA/DegQ/DegS familychromosome CDS4087110 1353 + 0.498152
SO4128 SPFH domain/Band 7 family proteinchromosome CDS4286103 936 - 0.458333
SO4129 SPFH domain/Band 7 family proteinchromosome CDS4287038 936 - 0.462607
SO4130 conserved hypothetical proteinchromosome CDS4287991 465 - 0.492473
SO4304 conserved hypothetical proteinchromosome CDS4482195 576 - 0.512153
SO4360 decaheme cytochrome cchromosome CDS4555605 915 - 0.398907
SO4399 hypothetical proteinchromosome CDS4591904 615 - 0.500813
SO4539 serine protease, subtilase familychromosome CDS4734044 4905 - 0.475433
SO4613 cytochrome oxidase assembly protein, putativechromosome CDS4807062 993 + 0.486405
SO4640 antioxidant, AhpC/Tsa familychromosome CDS4836897 477 - 0.48218
aat leucyl/phenylalanyl-tRNA--protein transferasechromosome CDS2759460 711 + 0.466948
ahpC alkyl hydroperoxide reductase, C subunitchromosome CDS993033 570 - 0.454386
ahpF alkyl hydroperoxide reductase, F subunitchromosome CDS991215 1584 - 0.496212
aprE cold-active serine alkaline proteasechromosome CDS3233538 2424 + 0.476898
bcp bacterioferritin comigratory proteinchromosome CDS1973442 471 - 0.464968
ccmA heme exporter protein CcmAchromosome CDS262669 651 - 0.40553
ccmB heme exporter protein CcmBchromosome CDS261971 687 - 0.47016
ccmC heme exporter protein CcmCchromosome CDS261223 747 - 0.455154
ccmE cytochrome c biogenesis protein CcmEchromosome CDS260541 486 - 0.465021
ccmF-1 cytochrome c-type biogenesis protein CcmFchromosome CDS265671 1980 + 0.471717
ccmF-2 cytochrome c-type biogenesis protein CcmFchromosome CDS500071 2058 - 0.483479
ccmH cytochrome c-type biogenesis protein CcmHchromosome CDS268213 480 + 0.4125
ccoN cytochrome c oxidase, cbb3-type, subunit Ichromosome CDS2470060 1437 - 0.46277
ccoQ cytochrome c oxidase, cbb3-type, CcoQ subunitchromosome CDS2469233 177 - 0.412429
clpA ATP-dependent Clp protease, ATP-binding subunit ClpAchromosome CDS2761285 2268 - 0.467813
clpB clpB proteinchromosome CDS3742470 2574 - 0.482906
clpP ATP-dependent Clp protease, proteolytic subunitchromosome CDS1882001 609 + 0.431855
clpX ATP-dependent Clp protease, ATP-binding subunit ClpXchromosome CDS1882709 1281 + 0.455894
coxG cytochrome c oxidase assembly protein coxGchromosome CDS4803866 582 + 0.479381
ctaB protoheme IX farnesyltransferasechromosome CDS4808057 903 + 0.493909
cydC ABC transporter, ATP-binding protein CydCchromosome CDS3929325 1752 - 0.494292
cydD ABC transporter, ATP-binding protein CydDchromosome CDS3931073 1941 - 0.487893
cysT-1 sulfate ABC transporter, permease proteinchromosome CDS3762243 846 + 0.484634
cysT-2 sulfate ABC transporter, permease proteinchromosome CDS4849037 882 + 0.453515
degS protease DegSchromosome CDS4088588 1083 + 0.483841
dnaJ chaperone protein DnaJchromosome CDS1170781 1137 + 0.525066
dnaK chaperone protein DnaKchromosome CDS1168751 1920 + 0.468229
dsbA thiol:disulfide interchange protein DsbAchromosome CDS335685 609 + 0.438424
dsbB disulfide bond formation protein bchromosome CDS3010180 528 + 0.445076
dsbC thiol:disulfide interchange protein DsbCchromosome CDS987534 726 + 0.465565
dsbD thiol:disulfide interchange protein DsbDchromosome CDS714174 1833 - 0.483361
dsbE thiol:disulfide interchange protein DsbEchromosome CDS267662 555 + 0.423423
fdhE fdhE proteinchromosome CDS113272 909 + 0.544554
fkbP-1 peptidyl-prolyl cis-trans isomerase FkbPchromosome CDS479507 336 + 0.467262
fkbP-2 peptidyl-prolyl cis-trans isomerase FkbPchromosome CDS3684867 420 - 0.466667
fklB peptidyl-prolyl cis-trans isomerase FklBchromosome CDS1180088 618 + 0.47411
fkpA FKBP-type peptidyl-prolyl cis-trans isomerase FkpAchromosome CDS1104192 768 + 0.416667
flgJ flagellar protein FlgJchromosome CDS3380959 1155 - 0.471861
fliJ flagellar protein FliJchromosome CDS3362833 444 - 0.445946
fliS flagellar protein FliSchromosome CDS3373086 411 - 0.389294
ftsH cell division protein FtsHchromosome CDS1239865 1950 + 0.482051
gcp O-sialoglycoprotein endopeptidasechromosome CDS1340245 1017 + 0.492625
glnD protein-P-II uridylyltransferasechromosome CDS1707639 2586 - 0.487239
glnE glutamate-ammonia-ligase adenylyltransferasechromosome CDS3907349 2973 - 0.490414
groEL chaperonin GroELchromosome CDS721019 1638 + 0.490232
groES chaperonin GroESchromosome CDS720670 291 + 0.463918
grpE heat shock protein GrpEchromosome CDS1600445 621 + 0.458937
gst glutathione S-transferasechromosome CDS4898499 648 + 0.439815
hflC hflC proteinchromosome CDS632545 894 + 0.431767
hflK hflK proteinchromosome CDS631396 1146 + 0.475567
hscA chaperone protein HscAchromosome CDS2381532 1863 + 0.488996
hscB co-chaperone Hsc20chromosome CDS2380940 525 + 0.453333
hslO chaperonin HslOchromosome CDS169814 861 - 0.475029
hslU heat shock protein HslVU, ATPase subunit HslUchromosome CDS4335874 1323 + 0.495087
hslV ATP-dependent protease HslVchromosome CDS4335331 525 + 0.508571
htpG heat shock protein HtpGchromosome CDS2114424 1914 + 0.49582
htpX peptidase HtpXchromosome CDS2844648 864 - 0.478009
hypB hydrogenase accessory protein HypBchromosome CDS2188479 795 - 0.475472
hypC hydrogenase assembly chaperone hypC/hupFchromosome CDS2188234 246 - 0.463415
hypD hydrogenase expression/formation protein HypDchromosome CDS2187032 1140 - 0.509649
hypE hydrogenase expression/formation protein HypEchromosome CDS2186020 1020 - 0.492157
hypF hydrogenase maturation protein HypFchromosome CDS2189500 2427 - 0.503914
ibpA 16 kDa heat shock protein Achromosome CDS2388813 444 + 0.418919
lon ATP-dependent protease Lachromosome CDS1884122 2358 + 0.487277
msrA peptide methionine sulfoxide reductasechromosome CDS2444417 480 - 0.477083
mtrF decaheme cytochrome c MtrFchromosome CDS1864144 1920 - 0.483333
nrdG anaerobic ribonucleoside-triphosphate reductase activating proteinchromosome CDS2950352 462 - 0.474026
nrfF cytochrome c-type biogenesis protein NrfF precursorchromosome CDS499625 450 - 0.488889
nrfG formate-dependent nitrite reductase, nrfG proteinchromosome CDS506273 675 + 0.496296
ohr organic hydroperoxide resistance proteinchromosome CDS1007131 426 - 0.483568
pcm protein-L-isoaspartate O-methyltransferasechromosome CDS3579274 636 - 0.477987
pflA pyruvate formate-lyase 1 activating enzymechromosome CDS3044508 741 + 0.472335
pilD type 4 prepilin-like proteins leader peptide processing enzymechromosome CDS428993 927 - 0.466019
ppiA peptidyl-prolyl cis-trans isomerase Achromosome CDS3964412 588 + 0.472789
ppiB-1 peptidyl-prolyl cis-trans isomerase Bchromosome CDS1876618 495 - 0.434343
ppiB-2 peptidyl-prolyl cis-trans isomerase Bchromosome CDS2702786 495 + 0.430303
ppiC-1 peptidyl-prolyl cis-trans isomerase Cchromosome CDS663045 279 + 0.469534
ppiC-2 peptidyl-prolyl cis-trans isomerase Cchromosome CDS1925082 279 + 0.483871
ppiD peptidyl-prolyl cis-trans isomerase Dchromosome CDS1887238 1866 + 0.452304
radA DNA repair protein RadAchromosome CDS1274209 1365 + 0.517949
slyD peptidyl-prolyl cis-trans isomerase SlyDchromosome CDS3558317 669 + 0.503737
smpB SsrA-binding proteinchromosome CDS1538569 492 - 0.447154
sppA signal peptide peptidase SppA, 67K typechromosome CDS2528948 1845 + 0.457995
sspA stringent starvation protein achromosome CDS636395 630 + 0.439683
surA survival protein surAchromosome CDS3796338 1305 + 0.465134
tig trigger factorchromosome CDS1880607 1305 + 0.44751
trxA thioredoxin 1chromosome CDS423252 327 - 0.443425
trxB thioredoxin reductasechromosome CDS2413765 954 - 0.477987
trxC thioredoxin 2chromosome CDS478910 423 - 0.456265
yhgI yhgI proteinchromosome CDS4814210 579 - 0.457686